Citrus Sinensis ID: 012712

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK
Secondary Structure (PSIPRED)
ccEEEEcccccEEEEEcccccEEEEEccccccccccccEEEEEccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccEEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEcccccccccEEEcEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEEEEEcccccEEEEccccccEEEcccEEEEEccccEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccEEEEEEccccccccccccccEEccHHHHccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccccEEccccccEEEEEEEccccccEEEEEccccEEEEEEcccccEEEcccccccccccccccccccccccEEEEEEcccccEEEEccccEEEEEEcccccccEEEEcccccccEEEEEEcccccEEEEEcccccccccEEEEEccccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEEEEc
Coil and Loop (DISEMBL)
mddasnnnnnkrarTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKldkhrgcvntvsfntdgdilisgsddrrvILWDWKTERVKLSfhsghndnvfqakimpftddrsivtcaadgqVRHAQILERGgvetkllgkhqgrahklaiepgsphvfytcgedglvqhfdlrtgaatelftcrpiddrrnyMTVVNLNAiaidprnanlfavagsdeytrlydirkykwdgstdfgqpadyfcppnligdeqvgitglafsdqsELLVSYNDEFIYLFTqdmglgpnpppsspvstrseasemgsdhtsaaspstantdvriapqvykghrncvtvkgvnffgpkceyvvsgsdcgriFIWKKKGGELIRVIEADRhvvnciephphstvlassgiesdikiltpnaadratlptniEQVCFSIYSADywwsksqnfscSILLFEWLVK
Flexible Loop (DISEMBL)
mddasnnnnnkrartsvdkalvDVWLRElgqlstrnfalrrraseDLVLRLGIyakldkhrgcvntvsfntdgdilisgsddRRVILWDWKTERVKlsfhsghndnvFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATElftcrpiddrrNYMTVVNLNaiaidprnaNLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDhtsaaspstantdVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK
Low Complexity Region (SEG)
MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK
Disordered region (IsUnstruct)
******************KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD**************************************VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLV*
Disordered Region (DISOPRED)
MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK
Disordered Region (DISEMBL)
************ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN*****************************NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK
Disordered Region (DISPRO)
****SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q8N7N5	591	DDB1- and CUL4-associated	yes	no	0.794	0.615	0.403	5e-73
Q5TAQ9	597	DDB1- and CUL4-associated	yes	no	0.768	0.589	0.406	2e-72
Q5U2M6	591	DDB1- and CUL4-associated	yes	no	0.768	0.595	0.406	2e-72
Q6NRH1	601	DDB1- and CUL4-associated	N/A	no	0.781	0.595	0.396	4e-72
Q5R448	597	DDB1- and CUL4-associated	yes	no	0.768	0.589	0.404	2e-71
Q28I90	604	DDB1- and CUL4-associated	yes	no	0.781	0.592	0.393	3e-70
P0C7V8	602	DDB1- and CUL4-associated	no	no	0.777	0.591	0.401	5e-69
A6NGE4	600	DDB1- and CUL4-associated	no	no	0.781	0.596	0.376	2e-64
Q8N5D0	677	WD and tetratricopeptide	no	no	0.465	0.314	0.336	6e-32
Q9DC22	876	DDB1- and CUL4-associated	no	no	0.561	0.293	0.325	7e-32

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score =  275 bits (703), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 168/416 (40%), Positives = 232/416 (55%), Gaps = 52/416 (12%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           +AL  +  RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L S
Sbjct: 147 QALPALRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLAS 204

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD +V++WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++   
Sbjct: 205 GSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSAT 264

Query: 139 GGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDD 196
              + TK + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + 
Sbjct: 265 QCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEK 324

Query: 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256
           +      V L  I ++P N + FAV G D+Y R+YD RK   + +    +    FCP +L
Sbjct: 325 K------VGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKIDENENNGVLKK---FCPHHL 375

Query: 257 IGDE-QVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314
           +  E +  IT L +S D +ELL SYNDE IYLF                          S
Sbjct: 376 VNSESKANITCLVYSHDGTELLASYNDEDIYLFN-------------------------S 410

Query: 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374
            H+  A             + YKGHRN  TVKGVNF+GPK E+VVSGSDCG IF+W+K  
Sbjct: 411 SHSDGAQ----------YIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSS 460

Query: 375 GELIRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQV 429
            ++I+ +E D+  VVNC+EPHPH  VLA+SG++ D+KI  P  A+ +T  T +++V
Sbjct: 461 CQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAP-TAEASTELTGLKEV 515

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Mus musculus (taxid: 10090)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score =  273 bits (699), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 164/403 (40%), Positives = 224/403 (55%), Gaps = 51/403 (12%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           +AL  +  RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L S
Sbjct: 153 QALPALRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLAS 210

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD +V++WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++   
Sbjct: 211 GSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSAT 270

Query: 139 GGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDD 196
              + TK + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + 
Sbjct: 271 QCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEK 330

Query: 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256
           +      V L  I ++P N + FAV G D++ R+YD RK   + +    +    FCP +L
Sbjct: 331 K------VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKK---FCPHHL 381

Query: 257 IGDE-QVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314
           +  E +  IT L +S D +ELL SYNDE IYLF                          S
Sbjct: 382 VNSESKANITCLVYSHDGTELLASYNDEDIYLFN-------------------------S 416

Query: 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374
            H+  A             + YKGHRN  TVKGVNF+GPK E+VVSGSDCG IF+W+K  
Sbjct: 417 SHSDGAQ----------YVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSS 466

Query: 375 GELIRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNA 416
            ++I+ +E D+  VVNC+EPHPH  VLA+SG++ D+KI  P A
Sbjct: 467 CQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA 509

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score =  273 bits (697), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 164/403 (40%), Positives = 224/403 (55%), Gaps = 51/403 (12%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           +AL  +  RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L S
Sbjct: 147 QALPALRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLAS 204

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD +V++WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++   
Sbjct: 205 GSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSAT 264

Query: 139 GGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDD 196
              + TK + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + 
Sbjct: 265 QCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEK 324

Query: 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256
           +      V L  I ++P N + FAV G D++ R+YD RK   + +    +    FCP +L
Sbjct: 325 K------VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKK---FCPHHL 375

Query: 257 IGDE-QVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314
           +  E +  IT L +S D +ELL SYNDE IYLF                          S
Sbjct: 376 VNSESKANITCLVYSHDGTELLASYNDEDIYLFN-------------------------S 410

Query: 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374
            H+  A             + YKGHRN  TVKGVNF+GPK E+VVSGSDCG IF+W+K  
Sbjct: 411 SHSDGAQ----------YIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSS 460

Query: 375 GELIRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNA 416
            ++I+ +E D+  VVNC+EPHPH  VLA+SG++ D+KI  P A
Sbjct: 461 CQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA 503

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q6NRH1|DCAF8_XENLA DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1

 Score =  272 bits (695), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 226/409 (55%), Gaps = 51/409 (12%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           +AL  +  R++G  S+  F      +   V R  +   LD H GCVNT+ FN  G  L S
Sbjct: 156 RALSALRQRQMG--SSTRFIYEACGARGFVQRFHLLHGLDGHSGCVNTLHFNQRGTCLAS 213

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD +V++WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++   
Sbjct: 214 GSDDLKVVVWDWVRRKPVLEFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSAT 273

Query: 139 GGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDD 196
              + TK + +H+G +HKLA+EP SP  F + GED +V   DLR    A+ L   +  + 
Sbjct: 274 HCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASRLVVTKEKES 333

Query: 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256
           +      V L  I ++P N   FAV G D++ R+YD RK   + +    +    FCP +L
Sbjct: 334 K------VGLYTIYVNPANTYQFAVGGRDQFVRIYDQRKINENVNNGVLKK---FCPHHL 384

Query: 257 IGDE-QVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314
           +  E +  IT L +S D SELL SYNDE IYLF                S+ S+ +E   
Sbjct: 385 VTSEAKANITCLVYSHDGSELLASYNDEDIYLFN---------------SSHSDGAEY-- 427

Query: 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374
                              + YKGHRN  TVKGVNF+GP+ E+VVSGSDCG IF+W+K  
Sbjct: 428 ------------------IKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEKSS 469

Query: 375 GELIRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422
            ++++ ++ D+  VVNC+EPHPH  VLA+SG++ D+KI  P A +   L
Sbjct: 470 CQIVQFMDGDKGGVVNCLEPHPHLPVLATSGLDYDVKIWLPTAKEPTEL 518

Xenopus laevis (taxid: 8355)

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/403 (40%), Positives = 224/403 (55%), Gaps = 51/403 (12%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           +AL  +  RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L S
Sbjct: 153 QALPALRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLAS 210

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD +V++WDW   +  L F SGH  NVFQAK +P + D ++   A DGQVR A++   
Sbjct: 211 GSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMRARDGQVRVAELSAT 270

Query: 139 GGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDD 196
              + TK + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + 
Sbjct: 271 QCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEK 330

Query: 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256
           +      V L  I ++P N + FAV G D++ R+YD RK   + +    +    FCP +L
Sbjct: 331 K------VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKK---FCPHHL 381

Query: 257 I-GDEQVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314
           + G+ +  IT L +S D +ELL SYNDE IYLF                          S
Sbjct: 382 VNGESKANITCLVYSHDGTELLASYNDEDIYLFN-------------------------S 416

Query: 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374
            H+  A             + YKGHRN  TVKGVNF+GPK E+VVSGSDCG IF+W+K  
Sbjct: 417 SHSDGAQ----------YVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSS 466

Query: 375 GELIRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNA 416
            ++I+ +E D+  VVNC+EPHPH  VLA+SG++ D+KI  P A
Sbjct: 467 CQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTA 509

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q28I90|DCAF8_XENTR DDB1- and CUL4-associated factor 8 OS=Xenopus tropicalis GN=dcaf8 PE=2 SV=1

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 161/409 (39%), Positives = 225/409 (55%), Gaps = 51/409 (12%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           +AL  +  R++G  S+  F      +   V R  +   LD H GCVNT+ FN  G  L S
Sbjct: 159 RALRALRQRQMG--SSTRFIYDACGARGFVQRFRLLHGLDGHSGCVNTLHFNQRGTWLAS 216

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD +V++WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++   
Sbjct: 217 GSDDLKVVVWDWVRRKPVLEFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSAT 276

Query: 139 GGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDD 196
              + TK + +H+G +HKLA+E  SP  F + GED +V   DLR    A+ L   +  + 
Sbjct: 277 HCCKNTKRVAQHKGASHKLALERDSPCTFLSAGEDAVVFTIDLRQDRPASRLVVTKEKEK 336

Query: 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256
           +      V L  I ++P N   FAV G D++ R+YD RK   + +    +    FCP +L
Sbjct: 337 K------VGLYTIYVNPANTYQFAVGGRDQFVRIYDQRKINENVNNGVLKK---FCPHHL 387

Query: 257 IGDE-QVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314
           +  E +  IT L +S D SELL SYNDE IYLF                S+ S+ +E   
Sbjct: 388 VTSEAKANITCLVYSHDGSELLASYNDEDIYLFN---------------SSHSDGAEY-- 430

Query: 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374
                              + YKGHRN  TVKGVNF+GP+ E+VVSGSDCG IF+W+K  
Sbjct: 431 ------------------IKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEKSS 472

Query: 375 GELIRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422
            ++++ ++ D+  VVNC+EPHPH  VLA+SG++ D+KI  P A +   L
Sbjct: 473 CQIVQFMDGDKGGVVNCLEPHPHLPVLATSGLDYDVKIWLPTAKEPTEL 521

Xenopus tropicalis (taxid: 8364)

>sp|P0C7V8|DC8L2_HUMAN DDB1- and CUL4-associated factor 8-like protein 2 OS=Homo sapiens GN=DCAF8L2 PE=2 SV=1

 Score =  261 bits (668), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 164/408 (40%), Positives = 222/408 (54%), Gaps = 52/408 (12%)

Query: 27  RELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86
           R+LG  S   F      +   V R  +  +L  H GCVNTV FN  G  L S  DD +VI
Sbjct: 167 RQLG--SRPRFVYEACGARAFVQRFRLQYRLADHVGCVNTVHFNQRGTRLASSGDDLKVI 224

Query: 87  LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKL 145
           +WDW  +R  L+F SGH +NVFQAK +P   D ++  CA DGQVR A+++       TK 
Sbjct: 225 VWDWVRQRPVLNFESGHTNNVFQAKFLPNCGDSTLAMCARDGQVRVAELINASYFNNTKC 284

Query: 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVV 204
           + +H+G AHKLA+EP SP+ F T GED +V   DLR    A+++   R  D +      V
Sbjct: 285 VAQHRGPAHKLALEPDSPYKFLTSGEDAVVFTIDLRQDRPASKVVVTRENDKK------V 338

Query: 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVG 263
            L  I ++P N   FAV G D++ R+YD RK   D   + G     F P +L+  D    
Sbjct: 339 GLYTITVNPANTYQFAVGGQDQFVRIYDQRKI--DKKENNG-VLKKFTPHHLVNCDFPTN 395

Query: 264 ITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322
           IT + +S D +ELL SYND+ IYLF                          S H+  A  
Sbjct: 396 ITCVVYSHDGTELLASYNDDDIYLFN-------------------------SSHSDGAQY 430

Query: 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382
           S          + +KGHRN  TVKGVNF+GP+ E+VVSGSDCG IF W+K   ++I+ ++
Sbjct: 431 S----------KRFKGHRNNTTVKGVNFYGPRSEFVVSGSDCGHIFFWEKSSCQIIQFLK 480

Query: 383 ADRH-VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQV 429
             R   +NC+EPHP+  VLA SG++ D+KI TP A   AT  T +++V
Sbjct: 481 GSREGTINCLEPHPYLPVLACSGLDHDVKIWTPTAK-AATELTGLKKV 527

Homo sapiens (taxid: 9606)

>sp|A6NGE4|DC8L1_HUMAN DDB1- and CUL4-associated factor 8-like protein 1 OS=Homo sapiens GN=DCAF8L1 PE=2 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 215/409 (52%), Gaps = 51/409 (12%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           + L  +  R+LG  S+  F      +   V R  +   L  H G V+T+ FN  G  L S
Sbjct: 156 QVLTALRQRQLG--SSARFVYEACGARTFVQRFRLQYLLGSHAGSVSTIHFNQRGTRLAS 213

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
             DD RVI+WDW  ++  L+F SGH+ NV QAK  P   D ++  C  DGQVR A+++  
Sbjct: 214 SGDDLRVIVWDWVRQKPVLNFESGHDINVIQAKFFPNCGDSTLAMCGHDGQVRVAELINA 273

Query: 139 GGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDD 196
              E TK + KH+G AH+LA+EP SP+ F T GED +V   DLR    A+++   R  D 
Sbjct: 274 SYCENTKRVAKHRGPAHELALEPDSPYKFLTSGEDAVVFTIDLRQDRPASKVVVTRENDK 333

Query: 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256
           +      V L  I+++P N   FAV G D++ R+YD R+   D   + G     F P +L
Sbjct: 334 K------VGLYTISMNPANIYQFAVGGHDQFVRIYDQRRI--DKKENNG-VLKKFTPHHL 384

Query: 257 I-GDEQVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314
           +  D    IT + +S D +ELL SYNDE IYLF   +  G                    
Sbjct: 385 VYCDFPTNITCVVYSHDGTELLASYNDEDIYLFNSSLSDGAQ------------------ 426

Query: 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374
                              + YKGHRN  T+K VNF+GP+ E+VVSGSDCG +F W+K  
Sbjct: 427 -----------------YVKRYKGHRNNDTIKCVNFYGPRSEFVVSGSDCGHVFFWEKSS 469

Query: 375 GELIRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL 422
            ++I+ +E DR  +VNC+EPHP+  VLA+SG++  ++I TP A     L
Sbjct: 470 SQIIQFMEGDRGDIVNCLEPHPYLPVLATSGLDQHVRIWTPTAKTATEL 518

Homo sapiens (taxid: 9606)

>sp|Q8N5D0|WDTC1_HUMAN WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2

 Score =  139 bits (349), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 10/223 (4%)

Query: 13  ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD 72
           A+ ++ + L+   ++E G LS   F  R   ++  + RLG+ A+L  H GCVN + +N  
Sbjct: 2   AKVNITRDLIRRQIKERGALS---FERRYHVTDPFIRRLGLEAELQGHSGCVNCLEWNEK 58

Query: 73  GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132
           GD+L SGSDD+  I+WD    +  LS H+GH  N+F  K +P   DR ++T AAD +V  
Sbjct: 59  GDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKFLPHAGDRILITGAADSKVHV 118

Query: 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTC 191
             +  +  +   + G H  R  ++A  P  P+ F++  EDGL++ +DLR  +  +E+   
Sbjct: 119 HDLTVKETIH--MFGDHTNRVKRIATAPMWPNTFWSAAEDGLIRQYDLRENSKHSEVL-- 174

Query: 192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234
             ID       +V    + ++P++ N  AV  S  + RLYDIR
Sbjct: 175 --IDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIR 215

Homo sapiens (taxid: 9606)

>sp|Q9DC22|DCAF6_MOUSE DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1

 Score =  139 bits (349), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 23/280 (8%)

Query: 21  LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80
           L DV  R LG         R     + + RL + A L+ H GCVNT+ +N  G+ ++SGS
Sbjct: 11  LWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGS 70

Query: 81  DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140
           DD ++++ +  + +V  +  SGH  N+F AK +P TDD+ IV+C+ DG + +  I +   
Sbjct: 71  DDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQDAE 130

Query: 141 VETKL-LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP---IDD 196
              +     H G  +++   P  P+ F +CGEDG V+ FD R   +     C+    I+ 
Sbjct: 131 TNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINC 190

Query: 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR--------KYKWDGSTDFGQPA 248
           RR   +V      AI P      AV  SD   R+YD R         Y   G+T  G  A
Sbjct: 191 RRAATSV------AICPPVPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTT--GMVA 242

Query: 249 DYFCPPNLIGDEQVGITGLAFS-DQSELLVSYNDEFIYLF 287
            +   P+ + ++   +T L +S D  E+LVSY+ ++IYLF
Sbjct: 243 RFI--PSHLSNKSCRVTSLCYSEDGQEILVSYSSDYIYLF 280

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
255560451	482	WD-repeat protein, putative [Ricinus com	0.895	0.850	0.780	0.0
356536404	497	PREDICTED: DDB1- and CUL4-associated fac	0.914	0.843	0.776	0.0
356575450	490	PREDICTED: DDB1- and CUL4-associated fac	0.897	0.838	0.769	0.0
356575448	489	PREDICTED: DDB1- and CUL4-associated fac	0.895	0.838	0.771	0.0
255638382	489	unknown [Glycine max]	0.895	0.838	0.768	0.0
449454241	480	PREDICTED: DDB1- and CUL4-associated fac	0.890	0.85	0.75	0.0
449523932	480	PREDICTED: DDB1- and CUL4-associated fac	0.890	0.85	0.75	0.0
225428115	493	PREDICTED: DDB1- and CUL4-associated fac	0.899	0.835	0.731	1e-179
224103139	496	predicted protein [Populus trichocarpa]	0.910	0.840	0.729	1e-178
297744559	486	unnamed protein product [Vitis vinifera]	0.853	0.804	0.705	1e-171

>gi|255560451|ref|XP_002521240.1| WD-repeat protein, putative [Ricinus communis] gi|223539508|gb|EEF41096.1| WD-repeat protein, putative [Ricinus communis]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/420 (78%), Positives = 367/420 (87%), Gaps = 10/420 (2%)

Query: 10  NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF 69
            KRART+ DKA+++VW RE+G+LSTRNFA R  ASEDLVLRL +Y KLDKHRGCVNTVSF
Sbjct: 2   KKRARTNPDKAVLNVWQREVGELSTRNFAHRLAASEDLVLRLDLYKKLDKHRGCVNTVSF 61

Query: 70  NTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129
           N +GDIL+SGSDDRRVILWDW++ R+KLSFHSGH  NVFQAKIMP+TDDRSIVTCAADGQ
Sbjct: 62  NANGDILVSGSDDRRVILWDWESGRIKLSFHSGHTKNVFQAKIMPYTDDRSIVTCAADGQ 121

Query: 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELF 189
           VR AQILE G VET LL KHQGRAHKLAIEPGSP++ YTCGEDGLVQHFDLRT  ATELF
Sbjct: 122 VRFAQILECGAVETTLLAKHQGRAHKLAIEPGSPYILYTCGEDGLVQHFDLRTRRATELF 181

Query: 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249
           +CRPIDDRR YM VV+LNAI IDPRN NLFAVAGSDEYTRLYDIR YKWDGST+FGQP D
Sbjct: 182 SCRPIDDRREYMPVVHLNAITIDPRNPNLFAVAGSDEYTRLYDIRMYKWDGSTEFGQPTD 241

Query: 250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309
           YFCPP+LIGDE+VGITGL+FSDQSELLVSYNDE IYLFT+DMGLGPNP PSSPVS  S A
Sbjct: 242 YFCPPHLIGDERVGITGLSFSDQSELLVSYNDELIYLFTRDMGLGPNPDPSSPVSIGSSA 301

Query: 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369
            E+          +  + D +++PQVY+GH+NC TVKGV+FFGP CEYVVSGSDCGRIFI
Sbjct: 302 GEL----------ACMDVDGKVSPQVYEGHQNCETVKGVSFFGPGCEYVVSGSDCGRIFI 351

Query: 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQV 429
           WKKKGGELIR +EAD+HVVNCIEPHPH+TVLASSGIE+DIK+ TP A +RATLPTNI ++
Sbjct: 352 WKKKGGELIRAMEADKHVVNCIEPHPHATVLASSGIENDIKMWTPKAIERATLPTNIGRL 411

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536404|ref|XP_003536728.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/421 (77%), Positives = 363/421 (86%), Gaps = 2/421 (0%)

Query: 10  NKRARTSV-DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS 68
           NKR  T+V +KA+ D+  RELG L  RNFALR  ASEDLVLRL +   L KHRGCVNTVS
Sbjct: 3   NKRPLTAVYNKAIPDLCNRELGHLPPRNFALRLGASEDLVLRLELLRNLQKHRGCVNTVS 62

Query: 69  FNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128
           FN DGD L+SGSDD  VILWDW+T R+KLSFHSGH++NVFQAK MP + DR+IVTCAADG
Sbjct: 63  FNADGDTLVSGSDDWGVILWDWETGRIKLSFHSGHSNNVFQAKFMPHSHDRTIVTCAADG 122

Query: 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188
           QVRHAQILE G VETK L KHQGRAHKLA+EPGSPH+FYTCGEDGLVQHFDLRTGAATEL
Sbjct: 123 QVRHAQILENGRVETKCLAKHQGRAHKLAVEPGSPHIFYTCGEDGLVQHFDLRTGAATEL 182

Query: 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248
           FTC+PI DR +YM V++LNAIAIDPRN NLFAVAGSDEY RLYDIR+YKWDGSTDFGQP 
Sbjct: 183 FTCQPIKDRWSYMPVIHLNAIAIDPRNPNLFAVAGSDEYARLYDIRRYKWDGSTDFGQPT 242

Query: 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP-PSSPVSTRS 307
           D+FCPP+LIGD+QVGITGLAFS+Q ELLVSYNDE IYLFTQDMGLGPNPP P SP S  S
Sbjct: 243 DFFCPPHLIGDQQVGITGLAFSEQRELLVSYNDELIYLFTQDMGLGPNPPDPGSPKSMNS 302

Query: 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367
           +ASE+G  H S +S S  + D +I PQV+KGHRNC TVKGVNFFGPKCEYVVSGSDCGRI
Sbjct: 303 DASEIGFSHGSVSSQSNMDADDKITPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRI 362

Query: 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIE 427
           FIWKKKGG+LIRV+EAD+HVVNCIE HPH+ VLASSGIE+DIKI TP A ++ATLP NIE
Sbjct: 363 FIWKKKGGQLIRVMEADKHVVNCIESHPHTMVLASSGIENDIKIWTPKALEKATLPKNIE 422

Query: 428 Q 428
           Q
Sbjct: 423 Q 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575450|ref|XP_003555854.1| PREDICTED: DDB1- and CUL4-associated factor 8-like isoform 2 [Glycine max]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/412 (76%), Positives = 356/412 (86%), Gaps = 1/412 (0%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           KAL D+  RE+G LS RNFALR  +SEDLVLRL +   L KHRGCVN VSFN DGDIL+S
Sbjct: 5   KALPDLCNREVGHLSPRNFALRLGSSEDLVLRLQLLRNLQKHRGCVNAVSFNADGDILVS 64

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD  +ILWDW+T R++LSFHSGH++NVFQAKIMP +DDR+IVTCAADGQVRHAQ+LE 
Sbjct: 65  GSDDCGIILWDWETGRIRLSFHSGHSNNVFQAKIMPHSDDRTIVTCAADGQVRHAQLLEN 124

Query: 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR 198
           G VETK L KHQGRAHKLAIEPGSPH+FYTCGEDGLVQ FDLRTGAATELFTC+PI DR 
Sbjct: 125 GRVETKCLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQRFDLRTGAATELFTCQPIKDRW 184

Query: 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258
           +YM V++LNAIAIDPRN NLFAVAGSDEY RLYDIRKYKWDGSTDFGQP ++FCPP+LIG
Sbjct: 185 SYMPVIHLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSTDFGQPTNFFCPPHLIG 244

Query: 259 DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP-PSSPVSTRSEASEMGSDHT 317
           D+QVGITGLAFS+  ELLVSYNDE IYLFTQDMGLGPNPP P SP S  S+ASE+G  H 
Sbjct: 245 DQQVGITGLAFSELRELLVSYNDELIYLFTQDMGLGPNPPDPVSPKSMNSDASEIGFSHG 304

Query: 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377
           S +S S  + D ++ PQV+KGHRNC TVKGVNFFGPKCEYVVSGSDCGRIFIWKKK G+L
Sbjct: 305 SVSSQSKMDADEKVTPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKSGQL 364

Query: 378 IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQV 429
           IRV+EAD++VVNCIE HPH+ VLASSGIE DIKI TP A ++ATLP NIEQ+
Sbjct: 365 IRVMEADKYVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQL 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575448|ref|XP_003555853.1| PREDICTED: DDB1- and CUL4-associated factor 8-like isoform 1 [Glycine max]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/411 (77%), Positives = 355/411 (86%), Gaps = 1/411 (0%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           KAL D+  RE+G LS RNFALR  +SEDLVLRL +   L KHRGCVN VSFN DGDIL+S
Sbjct: 5   KALPDLCNREVGHLSPRNFALRLGSSEDLVLRLQLLRNLQKHRGCVNAVSFNADGDILVS 64

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD  +ILWDW+T R++LSFHSGH++NVFQAKIMP +DDR+IVTCAADGQVRHAQ+LE 
Sbjct: 65  GSDDCGIILWDWETGRIRLSFHSGHSNNVFQAKIMPHSDDRTIVTCAADGQVRHAQLLEN 124

Query: 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR 198
           G VETK L KHQGRAHKLAIEPGSPH+FYTCGEDGLVQ FDLRTGAATELFTC+PI DR 
Sbjct: 125 GRVETKCLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQRFDLRTGAATELFTCQPIKDRW 184

Query: 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258
           +YM V++LNAIAIDPRN NLFAVAGSDEY RLYDIRKYKWDGSTDFGQP ++FCPP+LIG
Sbjct: 185 SYMPVIHLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSTDFGQPTNFFCPPHLIG 244

Query: 259 DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP-PSSPVSTRSEASEMGSDHT 317
           D+QVGITGLAFS+  ELLVSYNDE IYLFTQDMGLGPNPP P SP S  S+ASE+G  H 
Sbjct: 245 DQQVGITGLAFSELRELLVSYNDELIYLFTQDMGLGPNPPDPVSPKSMNSDASEIGFSHG 304

Query: 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377
           S +S S  + D ++ PQV+KGHRNC TVKGVNFFGPKCEYVVSGSDCGRIFIWKKK G+L
Sbjct: 305 SVSSQSKMDADEKVTPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKSGQL 364

Query: 378 IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQ 428
           IRV+EAD++VVNCIE HPH+ VLASSGIE DIKI TP A ++ATLP NIEQ
Sbjct: 365 IRVMEADKYVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQ 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638382|gb|ACU19502.1| unknown [Glycine max]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/411 (76%), Positives = 354/411 (86%), Gaps = 1/411 (0%)

Query: 19  KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS 78
           KAL D+  RE+G LS RNFALR  +SEDLVLRL +   L KHRGCVN VSFN DGDIL+S
Sbjct: 5   KALPDLCNREVGHLSPRNFALRLDSSEDLVLRLQLLRNLQKHRGCVNAVSFNADGDILVS 64

Query: 79  GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138
           GSDD  +ILWDW+T R++LSFHSGH++NVFQAKIMP +DDR+IVTCAADGQVRHAQ+LE 
Sbjct: 65  GSDDCGIILWDWETGRIRLSFHSGHSNNVFQAKIMPHSDDRTIVTCAADGQVRHAQLLEN 124

Query: 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR 198
           G VETK L KHQGRAHKLAIEPGSPH+FYTCGEDGLVQ FDLRTGAATELFTC+PI DR 
Sbjct: 125 GRVETKCLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQRFDLRTGAATELFTCQPIKDRW 184

Query: 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258
           +YM V++LNAIAIDPRN NLFAVAGSDEY RLYDIRKYKWDGST FGQP ++FCPP+LIG
Sbjct: 185 SYMPVIHLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSTGFGQPTNFFCPPHLIG 244

Query: 259 DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP-PSSPVSTRSEASEMGSDHT 317
           D+QVGITGLAFS+  ELLVSYNDE IYLFTQDMGLGPNPP P SP S  S+ASE+G  H 
Sbjct: 245 DQQVGITGLAFSELRELLVSYNDELIYLFTQDMGLGPNPPDPVSPKSMNSDASEIGFSHG 304

Query: 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL 377
           S +S S  + D ++ PQV+KGHRNC TVKGVNFFGPKCEYVVSGSDCGRIFIWKKK G+L
Sbjct: 305 SVSSQSKMDADEKVTPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKSGQL 364

Query: 378 IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQ 428
           IRV+EAD++VVNCIE HPH+ VLASSGIE DIKI TP A ++ATLP NIEQ
Sbjct: 365 IRVMEADKYVVNCIEFHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQ 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454241|ref|XP_004144864.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Cucumis sativus]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/420 (75%), Positives = 351/420 (83%), Gaps = 12/420 (2%)

Query: 10  NKRARTS-VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS 68
           NKRAR    +KA+V+VW RE+G+LSTRNFA R  A EDLVLRL +Y KL++H+GCVNTVS
Sbjct: 2   NKRARIDDSNKAVVNVWKREVGELSTRNFAHRLGALEDLVLRLDLYKKLERHKGCVNTVS 61

Query: 69  FNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128
           FN  GDIL+SGSDDRRVILW+W+T RVKLSF SGHN+NVFQAKIMP+TDD+SIVTCAADG
Sbjct: 62  FNAAGDILVSGSDDRRVILWNWETGRVKLSFQSGHNNNVFQAKIMPYTDDQSIVTCAADG 121

Query: 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188
           QVRHAQIL  G VET LLG H GRAHKLAIEPGSP++FYTCGEDGLVQ FDLRTG A EL
Sbjct: 122 QVRHAQILNSGHVETSLLGNHLGRAHKLAIEPGSPYMFYTCGEDGLVQRFDLRTGDAVEL 181

Query: 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248
           FTC+ +D+R  YM+ + LNAI IDPRN NLF VAGSDEY RLYDIRK   DGSTDFGQ A
Sbjct: 182 FTCQSVDNRAGYMSSIQLNAIVIDPRNPNLFVVAGSDEYARLYDIRKSGEDGSTDFGQLA 241

Query: 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308
           D +CPP+LIGDEQVGITGLAFS+ SELLVSYNDE IYLF +DMGLGPNP P  P+S  S+
Sbjct: 242 DCYCPPHLIGDEQVGITGLAFSELSELLVSYNDESIYLFNRDMGLGPNPNPVPPLSLSSD 301

Query: 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368
           ASEMG++          N D  I PQVYKGHRNC TVKGVNFFGPKCEYVVSGSDCGRIF
Sbjct: 302 ASEMGAE----------NVDNGI-PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIF 350

Query: 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQ 428
           IW+KKGG+LIRV+EAD  VVNCIEPHPH T+LASSGIESD+KI TP A +RATLP  IEQ
Sbjct: 351 IWRKKGGDLIRVMEADEDVVNCIEPHPHMTMLASSGIESDVKIWTPKAHERATLPEKIEQ 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523932|ref|XP_004168977.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Cucumis sativus]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/420 (75%), Positives = 351/420 (83%), Gaps = 12/420 (2%)

Query: 10  NKRARTS-VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS 68
           NKRAR    +KA+V+VW RE+G+LSTRNFA R  A EDLVLRL +Y KL++H+GCVNTVS
Sbjct: 2   NKRARIDDSNKAVVNVWKREVGELSTRNFAHRLGALEDLVLRLDLYKKLERHKGCVNTVS 61

Query: 69  FNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128
           FN  GDIL+SGSDDRRVILW+W+T RVKLSF SGHN+NVFQAKIMP+TDD+SIVTCAADG
Sbjct: 62  FNAAGDILVSGSDDRRVILWNWETGRVKLSFQSGHNNNVFQAKIMPYTDDQSIVTCAADG 121

Query: 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188
           QVRHAQIL  G VET LLG H GRAHKLAIEPGSP++FYTCGEDGLVQ FDLRTG A EL
Sbjct: 122 QVRHAQILNSGHVETSLLGNHLGRAHKLAIEPGSPYMFYTCGEDGLVQRFDLRTGDAVEL 181

Query: 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248
           FTC+ +D+R  YM+ + LNAI IDPRN NLF VAGSDEY RLYDIRK   DGSTDFGQ A
Sbjct: 182 FTCQSVDNRAGYMSSIQLNAIVIDPRNPNLFVVAGSDEYARLYDIRKSGGDGSTDFGQLA 241

Query: 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308
           D +CPP+LIGDEQVGITGLAFS+ SELLVSYNDE IYLF +DMGLGPNP P  P+S  S+
Sbjct: 242 DCYCPPHLIGDEQVGITGLAFSELSELLVSYNDESIYLFNRDMGLGPNPNPVPPLSLSSD 301

Query: 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368
           ASEMG++          N D  I PQVYKGHRNC TVKGVNFFGPKCEYVVSGSDCGRIF
Sbjct: 302 ASEMGAE----------NVDNGI-PQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIF 350

Query: 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQ 428
           IW+KKGG+LIRV+EAD  VVNCIEPHPH T+LASSGIESD+KI TP A +RATLP  IEQ
Sbjct: 351 IWRKKGGDLIRVMEADEDVVNCIEPHPHMTMLASSGIESDVKIWTPKAHERATLPEKIEQ 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428115|ref|XP_002280762.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Vitis vinifera]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 308/421 (73%), Positives = 352/421 (83%), Gaps = 9/421 (2%)

Query: 9   NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS 68
           + +R+ TS+D+A+VDVW RE+G L  R+FA R  AS+DLVL+  IY KL+KHRGCVNTVS
Sbjct: 2   SRRRSTTSLDRAVVDVWQREVGGLPNRSFAHRLAASKDLVLQFDIYRKLEKHRGCVNTVS 61

Query: 69  FNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128
           FN DG+IL+SGSDDRR+ILWDW++  VKLSF SGH +NVFQAK MP+TDDRSIVTCAADG
Sbjct: 62  FNADGEILVSGSDDRRIILWDWESGHVKLSFESGHINNVFQAKFMPYTDDRSIVTCAADG 121

Query: 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188
           QVR AQILE G VET LL KHQGRAHKLAIEPGSP++FYTCGEDGLVQH DLR+ AATEL
Sbjct: 122 QVRRAQILESGRVETTLLAKHQGRAHKLAIEPGSPYIFYTCGEDGLVQHIDLRSRAATEL 181

Query: 189 FTCRPIDDRRNYM-TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247
            TC  I++RR  +  VV LNAIAIDPRN+NLFAVAGSDEY RLYDIRKYKWDGSTDF QP
Sbjct: 182 LTCHQIEERRRGLRAVVQLNAIAIDPRNSNLFAVAGSDEYARLYDIRKYKWDGSTDFDQP 241

Query: 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS 307
            D+FCP +LIG+  VGITGL+FSDQ ELLVSYNDEFIYLFT+D+GLGP+P P+SP S  S
Sbjct: 242 IDFFCPSHLIGNPYVGITGLSFSDQRELLVSYNDEFIYLFTKDIGLGPDPIPASPASLGS 301

Query: 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367
                G+DH   A  ST +TD  ++PQVYKGH+NC TVKGV FFGPKCEYVVSGSDCGRI
Sbjct: 302 -----GADHPLEA--STMDTDDNVSPQVYKGHKNCKTVKGVGFFGPKCEYVVSGSDCGRI 354

Query: 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIE 427
           FIW KK GELIRV+EAD+HVVNCIE HPH+TVLASSGIE DIKI TP A ++A LP  IE
Sbjct: 355 FIW-KKSGELIRVMEADQHVVNCIESHPHATVLASSGIEKDIKIWTPKATEKAILPKTIE 413

Query: 428 Q 428
           +
Sbjct: 414 R 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103139|ref|XP_002312940.1| predicted protein [Populus trichocarpa] gi|222849348|gb|EEE86895.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/422 (72%), Positives = 356/422 (84%), Gaps = 5/422 (1%)

Query: 11  KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN 70
           KR+RT +D+A+V+V  RELGQLSTR+FA R  ASEDLVLRL I+ KL+KH GCVNT+SFN
Sbjct: 4   KRSRTDLDQAVVNVCKRELGQLSTRDFAHRLAASEDLVLRLEIHKKLEKHEGCVNTLSFN 63

Query: 71  TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130
           + GD+LISGSDD RVILWDW+T RVKLSF+SGH +NVFQAK MPF+DDR+IVTCAADG++
Sbjct: 64  SGGDVLISGSDDLRVILWDWETGRVKLSFNSGHRNNVFQAKFMPFSDDRTIVTCAADGEI 123

Query: 131 RHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELF 189
           R AQILE G V+T LLGKH+  R HKLAIEPGSPH+FY+CGEDG+VQHFDLRT +ATELF
Sbjct: 124 RQAQILEGGEVKTILLGKHKDSRVHKLAIEPGSPHIFYSCGEDGVVQHFDLRTRSATELF 183

Query: 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249
           TCR I+D R++   V+LNAIAIDPRN NLFAV G DE+ RLYDIRKY WDGS+DFGQPAD
Sbjct: 184 TCRSINDPRSFQPYVHLNAIAIDPRNPNLFAVGGMDEFARLYDIRKYSWDGSSDFGQPAD 243

Query: 250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG--PNPPPSSPVSTRS 307
           YFCP +LIG+   GITGL+FSDQSELLVSYN+EFIYLFT+DMGLG  P P  SSP+S  S
Sbjct: 244 YFCPQHLIGNGDTGITGLSFSDQSELLVSYNNEFIYLFTRDMGLGNPPFPSFSSPISMGS 303

Query: 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367
           + SE+  +  S AS S+ + D + A Q YKGHRNC TVKGV+FFGP+CEYV SGSDCGRI
Sbjct: 304 DTSEV--EPGSIASSSSMDVDGKNAAQAYKGHRNCETVKGVSFFGPRCEYVSSGSDCGRI 361

Query: 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIE 427
           FIWKK+GGELIRV+EADR VVNC EPHPH+  LASSGIESDIKI TP A +RATLPTNI 
Sbjct: 362 FIWKKRGGELIRVMEADRDVVNCTEPHPHTMALASSGIESDIKIWTPKAIERATLPTNIG 421

Query: 428 QV 429
           QV
Sbjct: 422 QV 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744559|emb|CBI37821.3| unnamed protein product [Vitis vinifera]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/421 (70%), Positives = 339/421 (80%), Gaps = 30/421 (7%)

Query: 9   NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS 68
           + +R+ TS+D+A+VDVW RE+G L  R+FA R  AS+DLVL+  IY KL+KHRGCVNTVS
Sbjct: 16  SRRRSTTSLDRAVVDVWQREVGGLPNRSFAHRLAASKDLVLQFDIYRKLEKHRGCVNTVS 75

Query: 69  FNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128
           FN DG+IL+SGSDDRR+ILWDW++  VKLSF SGH +NVFQAK MP+TDDRSIVTCAADG
Sbjct: 76  FNADGEILVSGSDDRRIILWDWESGHVKLSFESGHINNVFQAKFMPYTDDRSIVTCAADG 135

Query: 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188
           QVR AQILE G VET LL KHQGRAHKLAIEPGSP++FYTCGEDGLVQH DLR+ AATEL
Sbjct: 136 QVRRAQILESGRVETTLLAKHQGRAHKLAIEPGSPYIFYTCGEDGLVQHIDLRSRAATEL 195

Query: 189 FTCRPIDDRRNYM-TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247
            TC  I++RR  +  VV LNAIAIDPRN+NLFAVAGSDEY RLYDIRKYKWDGSTDF QP
Sbjct: 196 LTCHQIEERRRGLRAVVQLNAIAIDPRNSNLFAVAGSDEYARLYDIRKYKWDGSTDFDQP 255

Query: 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS 307
            D+FCP +LIG+  VGITGL+FSDQ ELLVSYNDEFIYLFT+D+GLGP+P P+SP S   
Sbjct: 256 IDFFCPSHLIGNPYVGITGLSFSDQRELLVSYNDEFIYLFTKDIGLGPDPIPASPAS--- 312

Query: 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367
               +G                     +YKGH+NC TVKGV FFGPKCEYVVSGSDCGRI
Sbjct: 313 ----LG---------------------IYKGHKNCKTVKGVGFFGPKCEYVVSGSDCGRI 347

Query: 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIE 427
           FIWKK  GELIRV+EAD+HVVNCIE HPH+TVLASSGIE DIKI TP A ++A LP  IE
Sbjct: 348 FIWKK-SGELIRVMEADQHVVNCIESHPHATVLASSGIEKDIKIWTPKATEKAILPKTIE 406

Query: 428 Q 428
           +
Sbjct: 407 R 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2132796	496	AT4G35140 "AT4G35140" [Arabido	0.873	0.806	0.714	1.7e-155
TAIR|locus:2121164	471	AT4G38480 "AT4G38480" [Arabido	0.676	0.658	0.639	1.6e-143
MGI|MGI:91860	591	Dcaf8 "DDB1 and CUL4 associate	0.545	0.423	0.418	2e-73
UNIPROTKB|Q5TAQ9	597	DCAF8 "DDB1- and CUL4-associat	0.545	0.418	0.415	8.6e-73
RGD|1308513	591	Dcaf8 "DDB1 and CUL4 associate	0.545	0.423	0.415	8.6e-73
UNIPROTKB|Q5R448	597	DCAF8 "DDB1- and CUL4-associat	0.545	0.418	0.411	7.6e-72
UNIPROTKB|G3V3G9	751	DCAF8 "DDB1- and CUL4-associat	0.545	0.332	0.415	1.2e-71
UNIPROTKB|F1MBJ1	877	DCAF6 "Uncharacterized protein	0.567	0.296	0.314	2.3e-55
UNIPROTKB|Q5R9B8	860	DCAF6 "DDB1- and CUL4-associat	0.567	0.302	0.314	3.3e-55
UNIPROTKB|Q58WW2	860	DCAF6 "DDB1- and CUL4-associat	0.567	0.302	0.314	3.3e-55

TAIR|locus:2132796 AT4G35140 "AT4G35140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
 Identities = 291/407 (71%), Positives = 333/407 (81%)

Query:    21 LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80
             +VD W RE+G +S+RNF+ R  ASE+LVLRL IY KL+KH+GCVNTVSFN +GD+LISGS
Sbjct:    19 VVDFWRREVGGISSRNFSNRFSASENLVLRLEIYKKLEKHKGCVNTVSFNAEGDVLISGS 78

Query:    81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140
             DDRRV+LWDW+   VKLSFHSGH +NVFQAK MPF+DDR+IVTCAADG VR A ILE   
Sbjct:    79 DDRRVVLWDWQLGNVKLSFHSGHANNVFQAKFMPFSDDRTIVTCAADGMVRRASILEGDK 138

Query:   141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200
             VET  LG HQGRAHKL IEPG+PH+FYTCGEDGLVQ FDLRT A TELFTCR +D RR  
Sbjct:   139 VETSFLGLHQGRAHKLCIEPGNPHIFYTCGEDGLVQRFDLRTEAPTELFTCRSVDPRRRN 198

Query:   201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260
             M  + LNAIAIDPRN+NLFAV G +EY RLYDIR+++ +G   F + AD+FCPP+LIG+E
Sbjct:   199 MDAIQLNAIAIDPRNSNLFAVGGMEEYARLYDIRRFQGEGLNGFTRAADHFCPPHLIGNE 258

Query:   261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320
              VGITGLAFS+QSELLVSYNDEFIYLFT  MGLG NP PSSP+S +S  S+  S+  S++
Sbjct:   259 DVGITGLAFSEQSELLVSYNDEFIYLFTPGMGLGSNPIPSSPIS-KSPVSK--SE--SSS 313

Query:   321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV 380
             SP   N        VYKGH+NC TVKGVNFFGP+ EYVVSGSDCGRIFIW+KKGGELIRV
Sbjct:   314 SPKDENE--HSVSLVYKGHKNCETVKGVNFFGPRSEYVVSGSDCGRIFIWRKKGGELIRV 371

Query:   381 IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIE 427
             +EADRHVVNCIEPHPH  VLASSGIESDIK+ T  AA+RATLP NIE
Sbjct:   372 MEADRHVVNCIEPHPHIPVLASSGIESDIKVWTSKAAERATLPENIE 418

GO:0000166 "nucleotide binding" evidence=ISS

TAIR|locus:2121164 AT4G38480 "AT4G38480" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 1.6e-143, Sum P(2) = 1.6e-143
 Identities = 202/316 (63%), Positives = 240/316 (75%)

Query:    11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN 70
             KR RT  D ++V+VW RELG L  R+F+ R  ASEDL+ RLG+  KLDKH+GCVNTVSFN
Sbjct:     7 KRPRT--DHSVVNVWERELGLLPNRSFSNRFSASEDLLRRLGLDKKLDKHKGCVNTVSFN 64

Query:    71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130
              DGDIL+SGSDDR+VILWDW+T  VKLSF SGH +N+FQAK MPF+DDR+IVT AAD QV
Sbjct:    65 ADGDILLSGSDDRQVILWDWQTASVKLSFDSGHFNNIFQAKFMPFSDDRTIVTSAADKQV 124

Query:   131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT 190
             R+++ILE G VET LLGKHQG  HKLA+EPGSP  FYTCGEDG V+HFDLRT  AT LFT
Sbjct:   125 RYSKILESGQVETSLLGKHQGPVHKLAVEPGSPFSFYTCGEDGAVKHFDLRTRVATNLFT 184

Query:   191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250
             C+       +  VV L+AIA+DPRN  L AVAG DEY R+YDIR Y+ +G  +F QP D+
Sbjct:   185 CK----EAKFNLVVYLHAIAVDPRNPGLLAVAGMDEYARVYDIRSYRSEGWYNFTQPIDH 240

Query:   251 FCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310
             FCP +LIGD+ VGITGLAFSDQSELL SY+DEFIYLFT DMGLGP P PSS  +      
Sbjct:   241 FCPGHLIGDDHVGITGLAFSDQSELLASYSDEFIYLFTPDMGLGPTPYPSSTKTEERMTP 300

Query:   311 EMGSDHTSAASPSTAN 326
             ++  +HT+  +    N
Sbjct:   301 QVYKEHTNRETVKGVN 316

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

MGI|MGI:91860 Dcaf8 "DDB1 and CUL4 associated factor 8" [Mus musculus (taxid:10090)]

 Score = 466 (169.1 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 111/265 (41%), Positives = 151/265 (56%)

Query:    27 RELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86
             RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L SGSDD +V+
Sbjct:   155 RELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVV 212

Query:    87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKL 145
             +WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++      + TK 
Sbjct:   213 VWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKR 272

Query:   146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVV 204
             + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + +      V
Sbjct:   273 VAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKK------V 326

Query:   205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVG 263
              L  I ++P N + FAV G D+Y R+YD RK   D + + G     FCP +L+  E +  
Sbjct:   327 GLYTIYVNPANTHQFAVGGRDQYVRIYDQRKI--DENENNGV-LKKFCPHHLVNSESKAN 383

Query:   264 ITGLAFS-DQSELLVSYNDEFIYLF 287
             IT L +S D +ELL SYNDE IYLF
Sbjct:   384 ITCLVYSHDGTELLASYNDEDIYLF 408

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

UNIPROTKB|Q5TAQ9 DCAF8 "DDB1- and CUL4-associated factor 8" [Homo sapiens (taxid:9606)]

 Score = 462 (167.7 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 110/265 (41%), Positives = 151/265 (56%)

Query:    27 RELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86
             RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L SGSDD +V+
Sbjct:   161 RELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVV 218

Query:    87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKL 145
             +WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++      + TK 
Sbjct:   219 VWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKR 278

Query:   146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVV 204
             + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + +      V
Sbjct:   279 VAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKK------V 332

Query:   205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVG 263
              L  I ++P N + FAV G D++ R+YD RK   D + + G     FCP +L+  E +  
Sbjct:   333 GLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI--DENENNGV-LKKFCPHHLVNSESKAN 389

Query:   264 ITGLAFS-DQSELLVSYNDEFIYLF 287
             IT L +S D +ELL SYNDE IYLF
Sbjct:   390 ITCLVYSHDGTELLASYNDEDIYLF 414

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

RGD|1308513 Dcaf8 "DDB1 and CUL4 associated factor 8" [Rattus norvegicus (taxid:10116)]

 Score = 462 (167.7 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 110/265 (41%), Positives = 151/265 (56%)

Query:    27 RELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86
             RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L SGSDD +V+
Sbjct:   155 RELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVV 212

Query:    87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKL 145
             +WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++      + TK 
Sbjct:   213 VWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKR 272

Query:   146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVV 204
             + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + +      V
Sbjct:   273 VAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKK------V 326

Query:   205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVG 263
              L  I ++P N + FAV G D++ R+YD RK   D + + G     FCP +L+  E +  
Sbjct:   327 GLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI--DENENNGV-LKKFCPHHLVNSESKAN 383

Query:   264 ITGLAFS-DQSELLVSYNDEFIYLF 287
             IT L +S D +ELL SYNDE IYLF
Sbjct:   384 ITCLVYSHDGTELLASYNDEDIYLF 408

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO;ISS

UNIPROTKB|Q5R448 DCAF8 "DDB1- and CUL4-associated factor 8" [Pongo abelii (taxid:9601)]

 Score = 453 (164.5 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
 Identities = 109/265 (41%), Positives = 151/265 (56%)

Query:    27 RELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86
             RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L SGSDD +V+
Sbjct:   161 RELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVV 218

Query:    87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKL 145
             +WDW   +  L F SGH  NVFQAK +P + D ++   A DGQVR A++      + TK 
Sbjct:   219 VWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMRARDGQVRVAELSATQCCKNTKR 278

Query:   146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVV 204
             + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + +      V
Sbjct:   279 VAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKK------V 332

Query:   205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-GDEQVG 263
              L  I ++P N + FAV G D++ R+YD RK   D + + G     FCP +L+ G+ +  
Sbjct:   333 GLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI--DENENNGV-LKKFCPHHLVNGESKAN 389

Query:   264 ITGLAFS-DQSELLVSYNDEFIYLF 287
             IT L +S D +ELL SYNDE IYLF
Sbjct:   390 ITCLVYSHDGTELLASYNDEDIYLF 414

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|G3V3G9 DCAF8 "DDB1- and CUL4-associated factor 8" [Homo sapiens (taxid:9606)]

 Score = 462 (167.7 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
 Identities = 110/265 (41%), Positives = 151/265 (56%)

Query:    27 RELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86
             RELG  S+  F      +   V R  +   L+ H GCVNT+ FN  G  L SGSDD +V+
Sbjct:   315 RELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVV 372

Query:    87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE-TKL 145
             +WDW   +  L F SGH  NVFQAK +P + D ++  CA DGQVR A++      + TK 
Sbjct:   373 VWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKR 432

Query:   146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVV 204
             + +H+G +HKLA+EP SP  F + GED +V   DLR    A++L   +  + +      V
Sbjct:   433 VAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKK------V 486

Query:   205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVG 263
              L  I ++P N + FAV G D++ R+YD RK   D + + G     FCP +L+  E +  
Sbjct:   487 GLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI--DENENNGV-LKKFCPHHLVNSESKAN 543

Query:   264 ITGLAFS-DQSELLVSYNDEFIYLF 287
             IT L +S D +ELL SYNDE IYLF
Sbjct:   544 ITCLVYSHDGTELLASYNDEDIYLF 568

GO:0005777 "peroxisome" evidence=IEA

UNIPROTKB|F1MBJ1 DCAF6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.3e-55, Sum P(3) = 2.3e-55
 Identities = 87/277 (31%), Positives = 138/277 (49%)

Query:    21 LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80
             L DV  R LG         R     + + RL + A L+ H GCVNT+ +N  G+ ++SGS
Sbjct:    11 LWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGS 70

Query:    81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140
             DD ++++ +  + +V  +  SGH  N+F AK +P T+D+ IV+C+ DG + +  + +   
Sbjct:    71 DDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAE 130

Query:   141 VETKL-LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199
                +     H G  +++   P  P+ F +CGEDG V+ FD R   +     C+  D   N
Sbjct:   131 TNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKD-DILIN 189

Query:   200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR--------KYKWDGSTDFGQPADYF 251
                     ++AI P      AV  SD   R+YD R         Y   G+T  G  A + 
Sbjct:   190 CRRAAT--SVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTT--GMVARFI 245

Query:   252 CPPNLIGDEQVGITGLAFS-DQSELLVSYNDEFIYLF 287
               P+ + ++   +T L +S D  E+LVSY+ ++IYLF
Sbjct:   246 --PSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLF 280

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5R9B8 DCAF6 "DDB1- and CUL4-associated factor 6" [Pongo abelii (taxid:9601)]

 Score = 344 (126.2 bits), Expect = 3.3e-55, Sum P(3) = 3.3e-55
 Identities = 87/277 (31%), Positives = 138/277 (49%)

Query:    21 LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80
             L DV  R LG         R     + + RL + A L+ H GCVNT+ +N  G+ ++SGS
Sbjct:    11 LWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGS 70

Query:    81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140
             DD ++++ +  + +V  +  SGH  N+F AK +P T+D+ IV+C+ DG + +  + +   
Sbjct:    71 DDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAE 130

Query:   141 VETKL-LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199
                +     H G  +++   P  P+ F +CGEDG V+ FD R   +     C+  D   N
Sbjct:   131 TNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKD-DILIN 189

Query:   200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR--------KYKWDGSTDFGQPADYF 251
                     ++AI P      AV  SD   R+YD R         Y   G+T  G  A + 
Sbjct:   190 CRRAAT--SVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTT--GMVARFI 245

Query:   252 CPPNLIGDEQVGITGLAFS-DQSELLVSYNDEFIYLF 287
               P+ + ++   +T L +S D  E+LVSY+ ++IYLF
Sbjct:   246 --PSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLF 280

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q58WW2 DCAF6 "DDB1- and CUL4-associated factor 6" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 3.3e-55, Sum P(3) = 3.3e-55
 Identities = 87/277 (31%), Positives = 138/277 (49%)

Query:    21 LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80
             L DV  R LG         R     + + RL + A L+ H GCVNT+ +N  G+ ++SGS
Sbjct:    11 LWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGS 70

Query:    81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140
             DD ++++ +  + +V  +  SGH  N+F AK +P T+D+ IV+C+ DG + +  + +   
Sbjct:    71 DDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAE 130

Query:   141 VETKL-LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199
                +     H G  +++   P  P+ F +CGEDG V+ FD R   +     C+  D   N
Sbjct:   131 TNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKD-DILIN 189

Query:   200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR--------KYKWDGSTDFGQPADYF 251
                     ++AI P      AV  SD   R+YD R         Y   G+T  G  A + 
Sbjct:   190 CRRAAT--SVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTT--GMVARFI 245

Query:   252 CPPNLIGDEQVGITGLAFS-DQSELLVSYNDEFIYLF 287
               P+ + ++   +T L +S D  E+LVSY+ ++IYLF
Sbjct:   246 --PSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLF 280

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-10
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 83/352 (23%), Positives = 126/352 (35%), Gaps = 80/352 (22%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
           L  H G V  V+F+ DG +L +GS D  + +WD +T  +  +   GH   V    +    
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPV--RDVAASA 61

Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176
           D   + + ++D  +R    LE G     L G H      +A  P    +  +   D  ++
Sbjct: 62  DGTYLASGSSDKTIR-LWDLETGECVRTLTG-HTSYVSSVAFSP-DGRILSSSSRDKTIK 118

Query: 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRK 235
            +D+ TG    L T R   D      V   N++A  P     F  + S D   +L+D+R 
Sbjct: 119 VWDVETG--KCLTTLRGHTD-----WV---NSVAFSP--DGTFVASSSQDGTIKLWDLRT 166

Query: 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYNDEFIYLFTQDMGLG 294
            K              C   L G     +  +AFS D  +LL S +D  I L+    G  
Sbjct: 167 GK--------------CVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-- 209

Query: 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF--FG 352
                                                     +GH N     GVN   F 
Sbjct: 210 ------------------------------------KCLGTLRGHEN-----GVNSVAFS 228

Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG 404
           P    + SGS+ G I +W  + GE ++ +    + V  +   P    LAS  
Sbjct: 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 78.2 bits (191), Expect = 1e-15
 Identities = 80/365 (21%), Positives = 131/365 (35%), Gaps = 39/365 (10%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
           L  H   + +++F+ DG++L+SGS D  + LWD       +    G +D+      +   
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 117 DDRSIVTCAADG-QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175
           D  SI+  ++          L   G   + L  H      LA  P    +      DG +
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235
           + +DLRTG                      ++++A  P    L A   SD   RL+D+  
Sbjct: 181 KLWDLRTGKPLSTLAGHTDP----------VSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-NDEFIYLFTQDMGLG 294
            K   ST  G                      +FS    LL S  +D  I L+       
Sbjct: 231 GKLLRSTLSGHSDSVVS---------------SFSPDGSLLASGSSDGTIRLWDLRSSSS 275

Query: 295 P---NPPPSSPVSTRSEASEMGSDHTSAASPSTA-----NTDVRIAPQVYKGHRNCVTVK 346
                   SS V + +  S  G    S +S  T       T   ++    KGH   V+  
Sbjct: 276 LLRTLSGHSSSVLSVA-FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS-- 332

Query: 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406
            ++F       V  GSD G I +W  + G+ ++ +E     V  +   P   V++S   +
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTD 391

Query: 407 SDIKI 411
             +++
Sbjct: 392 GTVRL 396

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 73.2 bits (178), Expect = 7e-14
 Identities = 76/372 (20%), Positives = 139/372 (37%), Gaps = 47/372 (12%)

Query: 53  IYAKLDKHRGCVNTVSFNT-DGDILIS--GSDDRRVILWDWKTERVKLSFHSGHNDNVFQ 109
           I +    H   V+ ++ ++ DG+ ++    S D  V LWD  T    +    GH+++V  
Sbjct: 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTS 160

Query: 110 AKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169
               P          + DG ++   +  R G     L  H      LA  P    +  + 
Sbjct: 161 LAFSP-DGKLLASGSSLDGTIKLWDL--RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217

Query: 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229
             DG ++ +DL TG        + +    +  +   +++ +    + +L A   SD   R
Sbjct: 218 SSDGTIRLWDLSTG--------KLLRSTLSGHSDSVVSSFS---PDGSLLASGSSDGTIR 266

Query: 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS-YNDEFIYLFT 288
           L+D+R       T  G                  +  +AFS   +LL S  +D  + L+ 
Sbjct: 267 LWDLRSSSSLLRTLSGH--------------SSSVLSVAFSPDGKLLASGSSDGTVRLW- 311

Query: 289 QDMGLGPNPPPSSPVSTRSEASEMG--SDHTSAASPSTANTDVRI-------APQVYKGH 339
            D+  G      +        S +    D +   S  + +  +R+         +  +GH
Sbjct: 312 -DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370

Query: 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV 399
            N ++V     F P    V SGS  G + +W    G L+R ++     V  ++  P    
Sbjct: 371 SNVLSVS----FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426

Query: 400 LASSGIESDIKI 411
           LAS   ++ I++
Sbjct: 427 LASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 71.7 bits (174), Expect = 2e-13
 Identities = 78/349 (22%), Positives = 122/349 (34%), Gaps = 37/349 (10%)

Query: 46  DLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-DRRVILWDWKTERVKLSFHSGHN 104
           DL     +   L+ H   V +++F+ DG +L SGS  D  + LWD +T +  LS  +GH 
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-LSTLAGHT 198

Query: 105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164
           D V      P      I + ++DG +R   +   G +    L  H       +  P    
Sbjct: 199 DPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSVV-SSFSPDG-S 254

Query: 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224
           +  +   DG ++ +DLR+       +        +      + ++A  P +  L A   S
Sbjct: 255 LLASGSSDGTIRLWDLRSS-----SSLLRTLSGHSSS----VLSVAFSP-DGKLLASGSS 304

Query: 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS--YNDE 282
           D   RL+D+   K                  L G E   ++ L+FS    LLVS   +D 
Sbjct: 305 DGTVRLWDLETGKL------------LSSLTLKGHEGP-VSSLSFSPDGSLLVSGGSDDG 351

Query: 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342
            I L+    G            +   +     D    +S ST  T            RN 
Sbjct: 352 TIRLWDLRTGKPLKTLEG---HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL 408

Query: 343 VTVKGVNF---FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV 388
                      F P  + + SGS    I +W  K          D  V+
Sbjct: 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVL 457

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMP 114
           A L  H G VN+V+F+ DG+ L+S S D  + LWD  T +   +   GH + V      P
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSP 229

Query: 115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174
             D   + + + DG +R   +  R G   + L  H      LA  P       +   DG 
Sbjct: 230 --DGYLLASGSEDGTIRVWDL--RTGECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGT 284

Query: 175 V 175
           +
Sbjct: 285 I 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
           L  H   VN+V+F+ DG +L SGS+D  + +WD +T     +  SGH ++V      P  
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSP-- 271

Query: 117 DDRSIVTCAADGQVR 131
           D + + + +ADG +R
Sbjct: 272 DGKRLASGSADGTIR 286

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
            L  H G V +V+F+ DG  L SGSDD  + LWD
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
            L  H G V +V+F+ DG++L SGSDD  V +WD
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 326 NTDVRIAPQVYKGHRNCVT-VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384
           + +     +  KGH   V  V           Y+ SGS    I +W  + GE +R +   
Sbjct: 37  DLETGELLRTLKGHTGPVRDVAASADG----TYLASGSSDKTIRLWDLETGECVRTLTGH 92

Query: 385 RHVVNCIEPHPHSTVLASSGIESDIKI 411
              V+ +   P   +L+SS  +  IK+
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKV 119

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393
           +  KGH   VT   V F  P  + + +GS  G I +W  + GEL+R ++     V  +  
Sbjct: 3   RTLKGHTGGVTC--VAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 394 HPHSTVLASSGIESDIKI 411
               T LAS   +  I++
Sbjct: 60  SADGTYLASGSSDKTIRL 77

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 18/159 (11%)

Query: 263 GITGLAFSDQSELLVS-YNDEFIYLFTQDMGLGP--NPPPSSPVSTRSEASEMGSDHTSA 319
           G+T +AFS   +LL +   D  I ++  + G         + PV   + AS   +D T  
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA-AS---ADGTYL 66

Query: 320 ASPSTANTDVRI-------APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372
           AS S+  T +R+         +   GH +   V  V F  P    + S S    I +W  
Sbjct: 67  ASGSSDKT-IRLWDLETGECVRTLTGHTS--YVSSVAFS-PDGRILSSSSRDKTIKVWDV 122

Query: 373 KGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
           + G+ +  +      VN +   P  T +ASS  +  IK+
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393
              +GH +   V  V  F P   +V S S  G I +W  + G+ +  +      VN +  
Sbjct: 129 TTLRGHTD--WVNSV-AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 394 HPHSTVLASSGIESDIKI 411
            P    L SS  +  IK+
Sbjct: 186 SPDGEKLLSSSSDGTIKL 203

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG1334	559	consensus WD40 repeat protein [General function pr	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG1310	758	consensus WD40 repeat protein [General function pr	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
PTZ00420	568	coronin; Provisional	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0639	705	consensus Transducin-like enhancer of split protei	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.97
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG1963	792	consensus WD40 repeat protein [General function pr	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.95
KOG4227	609	consensus WD40 repeat protein [General function pr	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1188	376	consensus WD40 repeat protein [General function pr	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1188	376	consensus WD40 repeat protein [General function pr	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
COG2319	466	FOG: WD40 repeat [General function prediction only	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.89
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.88
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
KOG0649	325	consensus WD40 repeat protein [General function pr	99.88
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.86
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.86
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.86
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.86
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.85
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.82
KOG1334	559	consensus WD40 repeat protein [General function pr	99.82
KOG2321	703	consensus WD40 repeat protein [General function pr	99.82
KOG2315	566	consensus Predicted translation initiation factor	99.82
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.8
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.8
KOG2139	445	consensus WD40 repeat protein [General function pr	99.79
PRK03629	429	tolB translocation protein TolB; Provisional	99.78
PRK04922	433	tolB translocation protein TolB; Provisional	99.77
PRK03629	429	tolB translocation protein TolB; Provisional	99.77
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
KOG2139	445	consensus WD40 repeat protein [General function pr	99.75
KOG2315	566	consensus Predicted translation initiation factor	99.75
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
PRK04922	433	tolB translocation protein TolB; Provisional	99.74
PRK05137	435	tolB translocation protein TolB; Provisional	99.74
PRK02889	427	tolB translocation protein TolB; Provisional	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.73
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
PRK02889	427	tolB translocation protein TolB; Provisional	99.72
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.71
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.7
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.69
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.67
COG4946	668	Uncharacterized protein related to the periplasmic	99.67
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.65
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.65
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
PRK00178	430	tolB translocation protein TolB; Provisional	99.63
KOG2314	698	consensus Translation initiation factor 3, subunit	99.63
KOG2314	698	consensus Translation initiation factor 3, subunit	99.63
PRK04792	448	tolB translocation protein TolB; Provisional	99.63
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.62
PRK01029	428	tolB translocation protein TolB; Provisional	99.62
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.6
PRK04792	448	tolB translocation protein TolB; Provisional	99.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.6
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.6
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.59
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.58
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.58
PRK00178	430	tolB translocation protein TolB; Provisional	99.58
PRK01029	428	tolB translocation protein TolB; Provisional	99.57
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.57
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.56
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.54
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.53
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.5
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.49
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.49
KOG4547	541	consensus WD40 repeat-containing protein [General	99.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.46
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.45
COG4946	668	Uncharacterized protein related to the periplasmic	99.45
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.45
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.44
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.43
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.4
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.38
PRK04043	419	tolB translocation protein TolB; Provisional	99.35
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.34
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.32
PRK04043	419	tolB translocation protein TolB; Provisional	99.31
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.3
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.27
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.24
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.24
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.2
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.2
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.2
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.19
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.19
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.16
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.15
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.11
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.08
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.07
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.01
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.97
KOG2695	425	consensus WD40 repeat protein [General function pr	98.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.96
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.95
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.94
KOG2695	425	consensus WD40 repeat protein [General function pr	98.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.92
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.9
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.87
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.87
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.85
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.85
PRK02888	635	nitrous-oxide reductase; Validated	98.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.84
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.8
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.8
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.79
KOG3621	726	consensus WD40 repeat-containing protein [General	98.77
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.76
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.72
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.72
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.7
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.69
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.68
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.62
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.61
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.57
PRK02888	635	nitrous-oxide reductase; Validated	98.56
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.54
KOG3621	726	consensus WD40 repeat-containing protein [General	98.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.51
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.48
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.47
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.38
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.38
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.36
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.32
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.3
COG3391	381	Uncharacterized conserved protein [Function unknow	98.26
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.25
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.21
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.18
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.09
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.08
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.05
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.04
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.0
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.0
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.98
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.97
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.96
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.95
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.94
COG3391	381	Uncharacterized conserved protein [Function unknow	97.93
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.92
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.76
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.74
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.66
PRK13616	591	lipoprotein LpqB; Provisional	97.58
KOG2395	644	consensus Protein involved in vacuole import and d	97.56
PRK13616	591	lipoprotein LpqB; Provisional	97.55
COG5276	370	Uncharacterized conserved protein [Function unknow	97.52
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.52
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.5
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.49
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.48
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.45
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.44
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.4
KOG2395	644	consensus Protein involved in vacuole import and d	97.37
PHA02713	557	hypothetical protein; Provisional	97.36
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.34
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.33
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.32
PHA02713	557	hypothetical protein; Provisional	97.2
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.19
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.03
KOG2444	238	consensus WD40 repeat protein [General function pr	96.9
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.87
KOG2444	238	consensus WD40 repeat protein [General function pr	96.83
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.74
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.68
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.55
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.48
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.47
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.42
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.29
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.27
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.25
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.23
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.19
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.16
PHA03098	534	kelch-like protein; Provisional	96.14
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.13
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.09
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.03
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.01
PRK10115	686	protease 2; Provisional	95.94
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.9
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.89
PHA03098	534	kelch-like protein; Provisional	95.86
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.79
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.68
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.56
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.52
COG4590	733	ABC-type uncharacterized transport system, permeas	95.46
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.43
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.39
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.39
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.36
PHA02790	480	Kelch-like protein; Provisional	95.32
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	95.17
PRK10115	686	protease 2; Provisional	95.17
PRK13684	334	Ycf48-like protein; Provisional	95.09
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.01
PRK13684	334	Ycf48-like protein; Provisional	94.93
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.84
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.78
COG3292	671	Predicted periplasmic ligand-binding sensor domain	94.71
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.62
PHA02790	480	Kelch-like protein; Provisional	94.6
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.59
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.52
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	94.43
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.36
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.28
COG4590	733	ABC-type uncharacterized transport system, permeas	94.26
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.09
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.93
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.73
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.71
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.66
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.61
COG5276	370	Uncharacterized conserved protein [Function unknow	93.35
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.3
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	93.18
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.12
COG5167	776	VID27 Protein involved in vacuole import and degra	92.95
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.8
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.51
KOG2247	615	consensus WD40 repeat-containing protein [General	92.0
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.94
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.79
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.73
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.68
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.67
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.35
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	91.32
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.28
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.27
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.18
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.04
KOG2247	615	consensus WD40 repeat-containing protein [General	90.79
COG5167	776	VID27 Protein involved in vacuole import and degra	90.75
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.43
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	90.28
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.18
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.83
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.57
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.55
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.52
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.07
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.66
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	88.54
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.46
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.4
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	88.27
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.13
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	87.79
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.58
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.96
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.44
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	86.32
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	86.06
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.94
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.52
PLN02153	341	epithiospecifier protein	85.03

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-62  Score=389.36  Aligned_cols=332  Identities=21%  Similarity=0.298  Sum_probs=295.7

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      ++...+.||.++|.|++|+|+|..||+|+.|.++++||+.+..+..+. ++|...|.+++|+|  ||+.||+|+.||+|+
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsP--Dgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSP--DGKKIASGSKDGSIR  182 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECC--CcchhhccccCCeEE
Confidence            455678899999999999999999999999999999999999998887 89999999999999  999999999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCC----CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGS----PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      +||..+++++. ..+.+|...|++++|.|-.    ..+|++++.||.++|||+..+.++..+..          |..+|+
T Consensus       183 lwdpktg~~~g-~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg----------HT~~VT  251 (480)
T KOG0271|consen  183 LWDPKTGQQIG-RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG----------HTASVT  251 (480)
T ss_pred             EecCCCCCccc-ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc----------CccceE
Confidence            99999988765 3489999999999998732    25799999999999999999988877754          566899


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC-----------CC----
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-----------DQ----  272 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~----  272 (458)
                      |+.|--+  .++++|+.|++|++|+...+..               ...+.+|...|+.++.+           |.    
T Consensus       252 CvrwGG~--gliySgS~DrtIkvw~a~dG~~---------------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~  314 (480)
T KOG0271|consen  252 CVRWGGE--GLIYSGSQDRTIKVWRALDGKL---------------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP  314 (480)
T ss_pred             EEEEcCC--ceEEecCCCceEEEEEccchhH---------------HHhhcccchheeeeeccchhhhhccccccccccC
Confidence            9999864  5999999999999999988764               33455677777777766           22    


Q ss_pred             ---------------------CcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccc
Q 012712          273 ---------------------SELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR  330 (458)
Q Consensus       273 ---------------------~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (458)
                                           ++.|++++|| ++.+|+....                                     .
T Consensus       315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-------------------------------------k  357 (480)
T KOG0271|consen  315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-------------------------------------K  357 (480)
T ss_pred             CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-------------------------------------c
Confidence                                 2359999977 7999997653                                     4


Q ss_pred             cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712          331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK  410 (458)
Q Consensus       331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  410 (458)
                      +++....+|...  |+.+.| |||++++|+++.|..|++|+..+|+.+.+|++|-+.|+.++|+.|.++|++|+.|.+++
T Consensus       358 kpi~rmtgHq~l--Vn~V~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  358 KPITRMTGHQAL--VNHVSF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLK  434 (480)
T ss_pred             cchhhhhchhhh--eeeEEE-CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEE
Confidence            567778888885  899998 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          411 ILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       411 iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +|++.+.++. .+++|...|.++.|+|||..+++|+.|..+++|.
T Consensus       435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999998776 7899999999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-60  Score=378.99  Aligned_cols=321  Identities=19%  Similarity=0.248  Sum_probs=286.8

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      ++.|+|++++|++|+.|.++|+||+.|...+                     .+.++|..-|.|++|+|||+.||+|+.|
T Consensus       120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---------------------~t~KgH~~WVlcvawsPDgk~iASG~~d  178 (480)
T KOG0271|consen  120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---------------------FTCKGHKNWVLCVAWSPDGKKIASGSKD  178 (480)
T ss_pred             EEEecCCCceEEecCCCceEEeeccCCCCcc---------------------eeecCCccEEEEEEECCCcchhhccccC
Confidence            4679999999999999999999999987665                     5689999999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccC---CCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      |+|++||.++|+++...+.+|...|++++|.|.   ...++||+++.||.++|||+..+.++..  +.+|+.+|+|+.|-
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--lsgHT~~VTCvrwG  256 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--LSGHTASVTCVRWG  256 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE--eccCccceEEEEEc
Confidence            999999999999988888999999999999873   3667999999999999999988877765  89999999999998


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC-----------CC--------------
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-----------PR--------------  214 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~--------------  214 (458)
                      -+|  ++++++.|++|++|+...|.+...++.          |...|+.++++           |.              
T Consensus       257 G~g--liySgS~DrtIkvw~a~dG~~~r~lkG----------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A  324 (480)
T KOG0271|consen  257 GEG--LIYSGSQDRTIKVWRALDGKLCRELKG----------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA  324 (480)
T ss_pred             CCc--eEEecCCCceEEEEEccchhHHHhhcc----------cchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence            766  799999999999999999988877764          33356666655           22              


Q ss_pred             ----------CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc
Q 012712          215 ----------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF  283 (458)
Q Consensus       215 ----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~  283 (458)
                                ++..+++|+.|.++.+|+....+              .+...+.+|..-|+.+.|+||++++|+++ |..
T Consensus       325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--------------KPITRMTGHQALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             HHHHHHhhccCcceeEEecCCceEEEecccccc--------------cchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence                      23469999999999999987654              34566778999999999999999999999 558


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~  363 (458)
                      |++|+..+                                      ++.+..|++|...  |..++| +.|.++|++|+.
T Consensus       391 VkLW~g~t--------------------------------------Gk~lasfRGHv~~--VYqvaw-saDsRLlVS~Sk  429 (480)
T KOG0271|consen  391 VKLWDGRT--------------------------------------GKFLASFRGHVAA--VYQVAW-SADSRLLVSGSK  429 (480)
T ss_pred             eeeeeCCC--------------------------------------cchhhhhhhccce--eEEEEe-ccCccEEEEcCC
Confidence            99999998                                      5678889999986  899999 999999999999


Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      |.++++|++.+.++...+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus       430 DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  430 DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.3e-50  Score=333.83  Aligned_cols=420  Identities=13%  Similarity=0.165  Sum_probs=319.4

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccc-cccc-----------------------------------------------
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQ-LSTR-----------------------------------------------   35 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~-~~~~-----------------------------------------------   35 (458)
                      +-|+|.|-++|+|...|.|||||....+ .++.                                               
T Consensus        65 AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~  144 (603)
T KOG0318|consen   65 AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT  144 (603)
T ss_pred             EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee
Confidence            4589999999999999999999987522 2222                                               


Q ss_pred             --------------cccccccccccceEEe------eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce
Q 012712           36 --------------NFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV   95 (458)
Q Consensus        36 --------------~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~   95 (458)
                                    +..+++++++|....+      +...+++.|...|+|++|+|||.++||++.||.|.+||=.+++.
T Consensus       145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~  224 (603)
T KOG0318|consen  145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK  224 (603)
T ss_pred             ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence                          2233778888887665      67778889999999999999999999999999999999999999


Q ss_pred             eeeec--cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc-ccceEEEEEcCCCCeEEEEecCC
Q 012712           96 KLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-QGRAHKLAIEPGSPHVFYTCGED  172 (458)
Q Consensus        96 ~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d  172 (458)
                      +..+.  .+|++.|++++|+|  |+..+++++.|.++++||+.+.+.+.+..+... .+.-..+.|..   ..|++.+.+
T Consensus       225 vg~l~~~~aHkGsIfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk---d~lItVSl~  299 (603)
T KOG0318|consen  225 VGELEDSDAHKGSIFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK---DHLITVSLS  299 (603)
T ss_pred             EEEecCCCCccccEEEEEECC--CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC---CeEEEEEcC
Confidence            88873  38999999999999  999999999999999999999887766433322 13334445552   358999999


Q ss_pred             CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcC
Q 012712          173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC  252 (458)
Q Consensus       173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  252 (458)
                      |.|.+++...++....+..          |...|+++..+|+ +.+|++|+.||.|.-|+..++...             
T Consensus       300 G~in~ln~~d~~~~~~i~G----------HnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~-------------  355 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISG----------HNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSD-------------  355 (603)
T ss_pred             cEEEEecccCCChhheecc----------cccceeEEEEcCC-CCEEEeeccCceEEEEecCCcccc-------------
Confidence            9999999999887666654          5568999999998 599999999999999999887531             


Q ss_pred             CCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          253 PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       253 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                       ......|...|.+++-+..+.++.++-|+++++.++.......... -....++.......++.........+....+.
T Consensus       356 -~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~  433 (603)
T KOG0318|consen  356 -RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLAVLSDGGTAVVACISDIVLLQD  433 (603)
T ss_pred             -ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce-eecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence             2233567889999999998999988889999999886543221110 01111122223333322222211111111110


Q ss_pred             ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE--EEeecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712          333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEADRHVVNCIEPHPHSTVLASSGIESDIK  410 (458)
Q Consensus       333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  410 (458)
                      ........-.....++++ +|++++++.|+.||.|+||.+..+++.  ..+..|.++|+++++|||+.+||++...+.+.
T Consensus       434 ~~~~~~~~~~y~~s~vAv-~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv  512 (603)
T KOG0318|consen  434 QTKVSSIPIGYESSAVAV-SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV  512 (603)
T ss_pred             CCcceeeccccccceEEE-cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence            000000011112567887 999999999999999999999776543  34567999999999999999999999999999


Q ss_pred             EecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          411 ILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       411 iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      +|++.+.+..  ...-|..+|.+++|||+.+.+|||+-|-+|.||+.
T Consensus       513 ~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  513 LYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             EEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence            9999988664  44569999999999999999999999999999985

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.6e-52  Score=332.82  Aligned_cols=290  Identities=22%  Similarity=0.313  Sum_probs=260.7

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      +...--|-+.+|..+.||+|++.||||+.+|.++||+..+...+..+ .+|...|.++.|+|..++..+|||+.||++++
T Consensus       167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl  245 (459)
T KOG0272|consen  167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKL  245 (459)
T ss_pred             hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceee
Confidence            33344467899999999999999999999999999999999877777 89999999999999433678999999999999


Q ss_pred             eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      |++.+...+..  +.+|...|..++|+|+| ++|++++.|.+-++||++++...-...        |  |...|.+++|+
T Consensus       246 w~~~~e~~l~~--l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QE--------G--Hs~~v~~iaf~  312 (459)
T KOG0272|consen  246 WKLSQETPLQD--LEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQE--------G--HSKGVFSIAFQ  312 (459)
T ss_pred             eccCCCcchhh--hhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhc--------c--cccccceeEec
Confidence            99988777766  89999999999999999 789999999999999999987655443        2  55689999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712          213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM  291 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~  291 (458)
                      || |.++++|+.|..-+|||+++++.               ..++.+|..+|.+++|+|+|..||+|+ |++++|||++.
T Consensus       313 ~D-GSL~~tGGlD~~~RvWDlRtgr~---------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  313 PD-GSLAATGGLDSLGRVWDLRTGRC---------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             CC-CceeeccCccchhheeecccCcE---------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            98 78999999999999999999863               446677999999999999999999999 55899999987


Q ss_pred             CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEE
Q 012712          292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iw  370 (458)
                                                            ......+.+|.+-  |..+.| +| .|.+|++++.|++++||
T Consensus       377 --------------------------------------r~~ly~ipAH~nl--VS~Vk~-~p~~g~fL~TasyD~t~kiW  415 (459)
T KOG0272|consen  377 --------------------------------------RSELYTIPAHSNL--VSQVKY-SPQEGYFLVTASYDNTVKIW  415 (459)
T ss_pred             --------------------------------------cccceecccccch--hhheEe-cccCCeEEEEcccCcceeee
Confidence                                                  4557778889885  899998 98 78999999999999999


Q ss_pred             EecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       371 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ...++.+++++.+|.+.|.++.++||+++++|++.|.++++|.
T Consensus       416 s~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  416 STRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-50  Score=345.98  Aligned_cols=374  Identities=17%  Similarity=0.180  Sum_probs=309.1

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCC--EEEEecC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD--ILISGSD   81 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~   81 (458)
                      +.|+|.+.+|++|+.|+.|+|||+..+.+.                     +.|+||.+.|.++.|.|+-+  .|++|..
T Consensus       111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~t---------------------h~fkG~gGvVssl~F~~~~~~~lL~sg~~  169 (775)
T KOG0319|consen  111 MAFDPTGTLLATGGADGRVKVWDIKNGYCT---------------------HSFKGHGGVVSSLLFHPHWNRWLLASGAT  169 (775)
T ss_pred             EEEcCCCceEEeccccceEEEEEeeCCEEE---------------------EEecCCCceEEEEEeCCccchhheeecCC
Confidence            357889999999999999999999977665                     56999999999999999764  5899999


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce--------------------
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--------------------  141 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~--------------------  141 (458)
                      |+++++||+.+.......+..|...|++++|++  |+..+++++.|..+.+||+.+.+..                    
T Consensus       170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~  247 (775)
T KOG0319|consen  170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG  247 (775)
T ss_pred             CceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence            999999999966653334478999999999999  8888888888888888877332111                    


Q ss_pred             --------------------------------------------------------------------------------
Q 012712          142 --------------------------------------------------------------------------------  141 (458)
Q Consensus       142 --------------------------------------------------------------------------------  141 (458)
                                                                                                      
T Consensus       248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~  327 (775)
T KOG0319|consen  248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL  327 (775)
T ss_pred             CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence                                                                                            


Q ss_pred             -----------------------------eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeec
Q 012712          142 -----------------------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR  192 (458)
Q Consensus       142 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  192 (458)
                                                   ....+.+|+..|.++....+| .+|++|+.|.++++|.++.+...... ..
T Consensus       328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~-~a  405 (775)
T KOG0319|consen  328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLC-VA  405 (775)
T ss_pred             eeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhh-hh
Confidence                                         001123488888888866666 68999999999999988544322111 11


Q ss_pred             ccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC
Q 012712          193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ  272 (458)
Q Consensus       193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (458)
                      .   ..+  |...|.+++++..+..+|++++.|+++++|++...+....     | ..+........|...|++++++|+
T Consensus       406 ~---~~g--H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-----~-~~~~~~~t~~aHdKdIN~Vaia~n  474 (775)
T KOG0319|consen  406 Q---ANG--HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-----P-IVLTCRYTERAHDKDINCVAIAPN  474 (775)
T ss_pred             h---hcc--cccccceeeecccCccEEEEecCCceEEEecCCCcccccc-----c-ceehhhHHHHhhcccccceEecCC
Confidence            1   112  5557899999887778999999999999999987332211     1 111122345568999999999999


Q ss_pred             CcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          273 SELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       273 ~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                      .+++|+|+.| +.++|+++.                                      ......+.||...  +.++.| 
T Consensus       475 dkLiAT~SqDktaKiW~le~--------------------------------------~~l~~vLsGH~RG--vw~V~F-  513 (775)
T KOG0319|consen  475 DKLIATGSQDKTAKIWDLEQ--------------------------------------LRLLGVLSGHTRG--VWCVSF-  513 (775)
T ss_pred             CceEEecccccceeeecccC--------------------------------------ceEEEEeeCCccc--eEEEEe-
Confidence            9999999966 799999985                                      5678899999986  899999 


Q ss_pred             cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEE
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVC  430 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~  430 (458)
                      +|..+.+++++.|++|+||.+.+..+++++.||...|..+.|-.+|+.|++++.||.|++|++.++++. .+..|..+|+
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW  593 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW  593 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence            999999999999999999999999999999999999999999999999999999999999999999887 7889999999


Q ss_pred             EEEEecCCcEEEeeecCCceEEEE
Q 012712          431 FSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       431 ~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +++-+|.+..++||+.||.|.+|+
T Consensus       594 aL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  594 ALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EEeecCccceeEecCCCeEEEEee
Confidence            999999999999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-50  Score=324.17  Aligned_cols=282  Identities=18%  Similarity=0.225  Sum_probs=256.8

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC-CCeEEEEecCCCeEEEEeC
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~  180 (458)
                      +-+.+|..+.|++  +++.|+||+.+|.+++|+..+...+.+  +.+|...+.++.|+|. ....+++|+.||++++|++
T Consensus       173 gd~rPis~~~fS~--ds~~laT~swsG~~kvW~~~~~~~~~~--l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSR--DSKHLATGSWSGLVKVWSVPQCNLLQT--LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeec--CCCeEEEeecCCceeEeecCCcceeEE--EeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            5577899999999  999999999999999999988765555  9999999999999998 3467999999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      .+..++..+..          |...|..++|+|+ |++|++++.|.+-++||+++...               .....+|
T Consensus       249 ~~e~~l~~l~g----------H~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~E---------------lL~QEGH  302 (459)
T KOG0272|consen  249 SQETPLQDLEG----------HLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSE---------------LLLQEGH  302 (459)
T ss_pred             CCCcchhhhhc----------chhhheeeeecCC-Cceeeecccccchhhcccccchh---------------hHhhccc
Confidence            99887777754          4457999999998 79999999999999999999764               2345678


Q ss_pred             ccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...|.+++|.|||.++++|+-| .-++||+++                                      +.++..+.+|
T Consensus       303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt--------------------------------------gr~im~L~gH  344 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT--------------------------------------GRCIMFLAGH  344 (459)
T ss_pred             ccccceeEecCCCceeeccCccchhheeeccc--------------------------------------CcEEEEeccc
Confidence            9999999999999999999966 689999999                                      5678889999


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC-CCCeEEEeecCCcEEEecCCccc
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      ..+  |.+++| +|+|..||+|+.|++++|||++..+.+.++.+|.+-|+.+.|+| .|.+|+|++.|++++||...+..
T Consensus       345 ~k~--I~~V~f-sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~  421 (459)
T KOG0272|consen  345 IKE--ILSVAF-SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS  421 (459)
T ss_pred             ccc--eeeEeE-CCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc
Confidence            886  999999 99999999999999999999999999999999999999999998 78899999999999999999987


Q ss_pred             cc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          419 RA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       419 ~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +. .+.+|.+.|.+++.+|||.+++|++.|.++++|.
T Consensus       422 ~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  422 PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            76 7889999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.5e-48  Score=295.37  Aligned_cols=297  Identities=18%  Similarity=0.290  Sum_probs=262.0

Q ss_pred             eEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           48 VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        48 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      ..+++..++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.+ .-....|..++|+|  .++++|.|+.|
T Consensus        42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sP--Sg~~VAcGGLd  118 (343)
T KOG0286|consen   42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSP--SGNFVACGGLD  118 (343)
T ss_pred             eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECC--CCCeEEecCcC
Confidence            4566778999999999999999999999999999999999999988887777 56678999999999  99999999999


Q ss_pred             CcEEEeecccc--c--ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          128 GQVRHAQILER--G--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       128 g~i~vw~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      +...||++.+.  +  ....+.+.+|++.+.++.|-+|+  .|++++.|.+..+||+++++....+..          |.
T Consensus       119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~G----------H~  186 (343)
T KOG0286|consen  119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHG----------HT  186 (343)
T ss_pred             ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecC----------Cc
Confidence            99999999854  2  23345589999999999999976  489999999999999999998888864          66


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-  282 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-  282 (458)
                      +.|.+++++|.+++.+++|+-|+..++||+|.+..               ...+.+|+..|+++.|.|+|.-+++|+++ 
T Consensus       187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---------------~qtF~ghesDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---------------VQTFEGHESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             ccEEEEecCCCCCCeEEecccccceeeeeccCcce---------------eEeecccccccceEEEccCCCeeeecCCCc
Confidence            68999999995589999999999999999999853               34566789999999999999999999976 


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      +.++||++..                                      +.+..+........|++++| |..|++|++|.
T Consensus       252 tcRlyDlRaD--------------------------------------~~~a~ys~~~~~~gitSv~F-S~SGRlLfagy  292 (343)
T KOG0286|consen  252 TCRLYDLRAD--------------------------------------QELAVYSHDSIICGITSVAF-SKSGRLLFAGY  292 (343)
T ss_pred             eeEEEeecCC--------------------------------------cEEeeeccCcccCCceeEEE-cccccEEEeee
Confidence            7999999984                                      33344443333335899999 99999999999


Q ss_pred             CCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      .|.++.+||.-.++.+..|.+|.+.|+++..+|||..++||+.|.++|||.
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999999999999999999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-47  Score=287.51  Aligned_cols=295  Identities=15%  Similarity=0.231  Sum_probs=255.5

Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccce
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA  153 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v  153 (458)
                      -+|+++|.|.+|++|...+|.+..++ .-....|+.+...|  +++.||+++. ..|++||++++...+...+.+|+..|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence            47999999999999999999999988 45567899999999  9999999886 58999999998886777799999999


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      +++.|..+| +.+++|++||+++|||++...+...+.           +..+|+++..+|. ...|++|..+|.|++||+
T Consensus        87 taVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-----------~~spVn~vvlhpn-QteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   87 TAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------HNSPVNTVVLHPN-QTELISGDQSGNIRVWDL  153 (311)
T ss_pred             EEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-----------CCCCcceEEecCC-cceEEeecCCCcEEEEEc
Confidence            999999999 799999999999999999987777666           5568999999997 678999999999999999


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM  312 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
                      .+...              ...+..+....|.++...|||++++.+. .|+.++|++.+.....+               
T Consensus       154 ~~~~c--------------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~---------------  204 (311)
T KOG0315|consen  154 GENSC--------------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE---------------  204 (311)
T ss_pred             cCCcc--------------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc---------------
Confidence            98753              3445555678999999999999999887 56899999987433222               


Q ss_pred             CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeEE
Q 012712          313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCI  391 (458)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~  391 (458)
                                       ..++.+++.|...  +..+.+ |||+++||+++.|.+++||+.++. +....+++|+..+..+
T Consensus       205 -----------------l~P~~k~~ah~~~--il~C~l-SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc  264 (311)
T KOG0315|consen  205 -----------------LEPVHKFQAHNGH--ILRCLL-SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC  264 (311)
T ss_pred             -----------------ceEhhheecccce--EEEEEE-CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee
Confidence                             4567778888885  788887 999999999999999999999887 6677889999999999


Q ss_pred             EecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEE
Q 012712          392 EPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIY  434 (458)
Q Consensus       392 ~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~  434 (458)
                      +||.||+||+||+.|+.+++|++..++.. ...+|.....+++.
T Consensus       265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            99999999999999999999999998755 66777766555553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-47  Score=329.23  Aligned_cols=414  Identities=18%  Similarity=0.210  Sum_probs=317.8

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeec-CCCceEEEEEecCCCEEEEec
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      +.....||+.+|++++..+.+++|++.+|++++.                     ++. |++||.-++|+|.|..|++|+
T Consensus        66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irs---------------------wKa~He~Pvi~ma~~~~g~LlAtgg  124 (775)
T KOG0319|consen   66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRS---------------------WKAIHEAPVITMAFDPTGTLLATGG  124 (775)
T ss_pred             heeeecCCccEEEEeeccceEEEEEcccchHhHh---------------------HhhccCCCeEEEEEcCCCceEEecc
Confidence            4556789999999999999999999999988744                     666 999999999999999999999


Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      .|+.++|||+..+.+.+.+ .+|.+.|.++.|.|......|++|..|+.+++||+.+... ....+..|.+.|++++|.+
T Consensus       125 aD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~  202 (775)
T KOG0319|consen  125 ADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSE  202 (775)
T ss_pred             ccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeecc
Confidence            9999999999999999998 8999999999999944455689999999999999986655 2234788999999999999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC--C--CcEEEEecCCCeEEEEecCCC
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR--N--ANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~--~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      ++ ..+++++.|..+.+||+.+-+....+...+           .+.++.+-++  +  +.++++++.+|.+++||..+.
T Consensus       203 d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye-----------~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~  270 (775)
T KOG0319|consen  203 DS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYE-----------SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG  270 (775)
T ss_pred             CC-ceEEEeccCcEEEEeehhhhhhhheechhh-----------heeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence            98 678999999999999997766655554321           3445555443  1  358889999999999998766


Q ss_pred             ccCCCccCCC------------------------------------------------------------------CCCC
Q 012712          237 KWDGSTDFGQ------------------------------------------------------------------PADY  250 (458)
Q Consensus       237 ~~~~~~~~~~------------------------------------------------------------------~~~~  250 (458)
                      +.........                                                                  .+..
T Consensus       271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL  350 (775)
T ss_pred             hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence            5332111000                                                                  0000


Q ss_pred             c----CCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCC----CCCCCCccccccccccCCCCcc-cc
Q 012712          251 F----CPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPN----PPPSSPVSTRSEASEMGSDHTS-AA  320 (458)
Q Consensus       251 ~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~  320 (458)
                      +    ....+..+|...|.++....+|-+|++++.| ++++|.++++....    ...++.........  +..+.. ++
T Consensus       351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffv  428 (775)
T KOG0319|consen  351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFV  428 (775)
T ss_pred             EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee--cccCccEEE
Confidence            0    0011455677788888866778899999955 89999884433221    12333333332222  111111 11


Q ss_pred             CCCCCCc----------cc-----ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCC
Q 012712          321 SPSTANT----------DV-----RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR  385 (458)
Q Consensus       321 ~~~~~~~----------~~-----~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (458)
                      ..+.+..          ..     .........|..  .|++++. +|+.+++|+|+.|.+.+||+++....+.++.+|.
T Consensus       429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK--dIN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~  505 (775)
T KOG0319|consen  429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK--DINCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT  505 (775)
T ss_pred             EecCCceEEEecCCCcccccccceehhhHHHHhhcc--cccceEe-cCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence            1111110          11     111112335555  4999998 9999999999999999999999999999999999


Q ss_pred             ceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       386 ~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ..|.++.|+|..+.+||+|.|++|+||.+++..+. ++.+|...|..+.|-.+|+.|++++.||-|++|+.
T Consensus       506 RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  506 RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence            99999999999999999999999999999999887 67789999999999999999999999999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.1e-45  Score=304.44  Aligned_cols=379  Identities=13%  Similarity=0.244  Sum_probs=293.9

Q ss_pred             CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      +.++.|+|||.++|+.+.||.|.|||=.+|+.+..                  +..-.+|++.|.+++|+||++.++|++
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~------------------l~~~~aHkGsIfalsWsPDs~~~~T~S  254 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE------------------LEDSDAHKGSIFALSWSPDSTQFLTVS  254 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE------------------ecCCCCccccEEEEEECCCCceEEEec
Confidence            35788999999999999999999999999998744                  111238999999999999999999999


Q ss_pred             CCCeEEEEECCCcceeeeeccCCC--cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEE
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  158 (458)
                      .|.+++|||+.+++++.++..+.+  .....+.|    ....|++.+.+|.|.+++......+..  +.+|...|+++..
T Consensus       255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW----qkd~lItVSl~G~in~ln~~d~~~~~~--i~GHnK~ITaLtv  328 (603)
T KOG0318|consen  255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW----QKDHLITVSLSGTINYLNPSDPSVLKV--ISGHNKSITALTV  328 (603)
T ss_pred             CCceEEEEEeeccceEEEeecCCchhceEEEEEE----eCCeEEEEEcCcEEEEecccCCChhhe--ecccccceeEEEE
Confidence            999999999999999888855443  34445556    456899999999999999988885444  8999999999999


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      +|++ ..|++|+.||.|.-|+..++..-+...         ..|...|.+++-+..  ..+++.+.|.++++.++.....
T Consensus       329 ~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g---------~~h~nqI~~~~~~~~--~~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  329 SPDG-KTIYSGSYDGHINSWDSGSGTSDRLAG---------KGHTNQIKGMAASES--GELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             cCCC-CEEEeeccCceEEEEecCCcccccccc---------ccccceEEEEeecCC--CcEEEEecCCeEEEEecccCcc
Confidence            9999 789999999999999999887654431         115557899988764  4677888999999998865443


Q ss_pred             CCCc--cCCC-CCC--CcCC-----------Ccccc--------ccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCC
Q 012712          239 DGST--DFGQ-PAD--YFCP-----------PNLIG--------DEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGL  293 (458)
Q Consensus       239 ~~~~--~~~~-~~~--~~~~-----------~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~  293 (458)
                      ....  .++. |.-  ....           ..++.        .-.....+++++|++..++.|++ +++++|.+....
T Consensus       397 t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~  476 (603)
T KOG0318|consen  397 TKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE  476 (603)
T ss_pred             cccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence            3221  1110 000  0000           00000        11234567888899888888884 478999887642


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                      .                                    ........|..+  ++.++| |||+.|||++...+.+.+||+.
T Consensus       477 l------------------------------------~ee~~~~~h~a~--iT~vay-Spd~~yla~~Da~rkvv~yd~~  517 (603)
T KOG0318|consen  477 L------------------------------------KEEAKLLEHRAA--ITDVAY-SPDGAYLAAGDASRKVVLYDVA  517 (603)
T ss_pred             c------------------------------------cceeeeecccCC--ceEEEE-CCCCcEEEEeccCCcEEEEEcc
Confidence            1                                    223345566665  899998 9999999999999999999999


Q ss_pred             CCeEEE-EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCce
Q 012712          374 GGELIR-VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSI  450 (458)
Q Consensus       374 ~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i  450 (458)
                      +.+... .+..|...|.+++|+|+..++|||+.|..|.||+++.....  ....|...|+.+.|--+ ..+++.+.|..|
T Consensus       518 s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~i  596 (603)
T KOG0318|consen  518 SREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANI  596 (603)
T ss_pred             cCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCccee
Confidence            887643 34559999999999999999999999999999999876443  34567778999999855 555688999999


Q ss_pred             EEEEE
Q 012712          451 LLFEW  455 (458)
Q Consensus       451 ~~w~~  455 (458)
                      ++|..
T Consensus       597 K~W~v  601 (603)
T KOG0318|consen  597 KVWNV  601 (603)
T ss_pred             EEecc
Confidence            99985

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.9e-46  Score=322.29  Aligned_cols=395  Identities=17%  Similarity=0.222  Sum_probs=326.9

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR   84 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   84 (458)
                      +-+|+..+||.|..||.|+||+..++..+                     -++.||+.+|+++.|...|..||+||.|+.
T Consensus        72 ~~~~d~l~lAVGYaDGsVqif~~~s~~~~---------------------~tfngHK~AVt~l~fd~~G~rlaSGskDt~  130 (888)
T KOG0306|consen   72 RSSDDILLLAVGYADGSVQIFSLESEEIL---------------------ITFNGHKAAVTTLKFDKIGTRLASGSKDTD  130 (888)
T ss_pred             eccCCcceEEEEecCceEEeeccCCCcee---------------------eeecccccceEEEEEcccCceEeecCCCcc
Confidence            44678888999999999999999976544                     468999999999999999999999999999


Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee---------------------
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---------------------  143 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~---------------------  143 (458)
                      |.+||+-......++ .+|...|+..-|..  +.+.+++.+.|+.|++||+.+..+..+                     
T Consensus       131 IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~  207 (888)
T KOG0306|consen  131 IIVWDLVGEEGLFRL-RGHKDSITQALFLN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTA  207 (888)
T ss_pred             EEEEEeccceeeEEe-ecchHHHhHHhccC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEE
Confidence            999999877776776 79999999888887  788888888888888888866543200                     


Q ss_pred             --------------------------------------------------------------------------------
Q 012712          144 --------------------------------------------------------------------------------  143 (458)
Q Consensus       144 --------------------------------------------------------------------------------  143 (458)
                                                                                                      
T Consensus       208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~  287 (888)
T KOG0306|consen  208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL  287 (888)
T ss_pred             ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------------e
Q 012712          144 -------------------------------------------------------------------------------K  144 (458)
Q Consensus       144 -------------------------------------------------------------------------------~  144 (458)
                                                                                                     .
T Consensus       288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i  367 (888)
T KOG0306|consen  288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI  367 (888)
T ss_pred             HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence                                                                                           1


Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      .+.+|...|.+++++.+. .+++++ ..+.+++|+..+.+++.++.+            ..+.+..|-|. ++++++|..
T Consensus       368 ~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kciRTi~~------------~y~l~~~Fvpg-d~~Iv~G~k  432 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKCIRTITC------------GYILASKFVPG-DRYIVLGTK  432 (888)
T ss_pred             eeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcceeEEecc------------ccEEEEEecCC-CceEEEecc
Confidence            112377888999999886 444444 457899999999999988864            25789999995 799999999


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCC-----CCCC
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLG-----PNPP  298 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~-----~~~~  298 (458)
                      .|.+.+||+.+..+.               .....|.+.|..++.+||++.+++++.| +|++||..-...     ...+
T Consensus       433 ~Gel~vfdlaS~~l~---------------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l  497 (888)
T KOG0306|consen  433 NGELQVFDLASASLV---------------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL  497 (888)
T ss_pred             CCceEEEEeehhhhh---------------hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee
Confidence            999999999987643               3344689999999999999999999955 799999754322     0000


Q ss_pred             -----CCCCccccccccccCCCCccccCCCCCCccc------ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          299 -----PSSPVSTRSEASEMGSDHTSAASPSTANTDV------RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       299 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                           ..-..........++|+++.+++...+....      .+..-.+.||.-+  |.++.. |||++.+++|+.|.+|
T Consensus       498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP--V~smDI-S~DSklivTgSADKnV  574 (888)
T KOG0306|consen  498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNV  574 (888)
T ss_pred             eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc--eeEEec-cCCcCeEEeccCCCce
Confidence                 0111122344567899999999888776543      4555677899986  899998 9999999999999999


Q ss_pred             EEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc-cccccccccEEEEEEecCCcEEEeeec
Q 012712          368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVCFSIYSADYWWSKSQNF  446 (458)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~s~~~  446 (458)
                      ++|-++-|.+-+.+-+|...|.++.|-|+..++.++|.|+.|+-||-+.-+. ..+.+|...|++++.+|+|.++++++.
T Consensus       575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh  654 (888)
T KOG0306|consen  575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH  654 (888)
T ss_pred             EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence            9999999999999999999999999999999999999999999999887655 488999999999999999999999999


Q ss_pred             CCceEEEEEe
Q 012712          447 SCSILLFEWL  456 (458)
Q Consensus       447 d~~i~~w~~~  456 (458)
                      |.+|++|+-.
T Consensus       655 D~sIRlwE~t  664 (888)
T KOG0306|consen  655 DKSIRLWERT  664 (888)
T ss_pred             CceeEeeecc
Confidence            9999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.3e-45  Score=313.55  Aligned_cols=408  Identities=14%  Similarity=0.184  Sum_probs=317.8

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.|||+|+++|.|. ...+.||... |....            ....+.+.+++.+|-..|.++.|+.|.++|++|+.|
T Consensus       101 ~i~fSPng~~fav~~-gn~lqiw~~P-~~~~~------------~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD  166 (893)
T KOG0291|consen  101 AIKFSPNGKFFAVGC-GNLLQIWHAP-GEIKN------------EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRD  166 (893)
T ss_pred             eEEECCCCcEEEEEe-cceeEEEecC-cchhc------------ccCcceEeeeecCCccceeEEEeccCCceEEecccc
Confidence            456999999999988 6789999987 32221            112346678899999999999999999999999999


Q ss_pred             CeEEEEECCCcceee-eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-----------------------c
Q 012712           83 RRVILWDWKTERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----------------------R  138 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-----------------------~  138 (458)
                      ..+++|+++..+... ..+.+|...|.+.-|..  +...+++.+.||.+.+|....                       +
T Consensus       167 ~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~  244 (893)
T KOG0291|consen  167 LSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG  244 (893)
T ss_pred             ceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence            999999998766522 23489999999999999  999999999999999998861                       1


Q ss_pred             cc---------eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          139 GG---------VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       139 ~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      +.         .....+......+++.+|++.. ++|+++-..|...+|.+..-.++..+..          ...+|..+
T Consensus       245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f~lih~LSi----------s~~~I~t~  313 (893)
T KOG0291|consen  245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDFNLIHSLSI----------SDQKILTV  313 (893)
T ss_pred             hhhhcceEEEEEEeeeecccccceeeeeccCCc-eEEEEEecCCeeEEEecCCceEEEEeec----------ccceeeEE
Confidence            11         0111223334789999999977 8999999999999999998888877765          33479999


Q ss_pred             EECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEE
Q 012712          210 AIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLF  287 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~  287 (458)
                      +|+.. |.+++.|+.. |.+-+|+.++....               ...++|...+++++++|||+++|+|++| +|++|
T Consensus       314 ~~N~t-GDWiA~g~~klgQLlVweWqsEsYV---------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW  377 (893)
T KOG0291|consen  314 SFNST-GDWIAFGCSKLGQLLVWEWQSESYV---------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW  377 (893)
T ss_pred             Eeccc-CCEEEEcCCccceEEEEEeecccee---------------eeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence            99987 6888888754 89999999876532               2234578899999999999999999955 89999


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee---cCcc--ceeeeeEEEEecCCCcEEEEec
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY---KGHR--NCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      |...+.....+..+.......  .+...+..+...+.+......-+..+   +...  .+....+++. +|.|..+.+|+
T Consensus       378 n~~SgfC~vTFteHts~Vt~v--~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav-D~sGelV~AG~  454 (893)
T KOG0291|consen  378 NTQSGFCFVTFTEHTSGVTAV--QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV-DPSGELVCAGA  454 (893)
T ss_pred             eccCceEEEEeccCCCceEEE--EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE-cCCCCEEEeec
Confidence            999977766666555544333  34444455555555444433333222   2211  2233567776 88888888888


Q ss_pred             CCC-eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc-cccccccccccEEEEEEecCCcE
Q 012712          363 DCG-RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA-DRATLPTNIEQVCFSIYSADYWW  440 (458)
Q Consensus       363 ~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~v~~~~~s~d~~~  440 (458)
                      .|. .|++|++++|+++..+.+|.++|.+++|+|++..||+++.|.+||+|++-.. .......+...+.+++|+|||+-
T Consensus       455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~e  534 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKE  534 (893)
T ss_pred             cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCe
Confidence            775 6888888999999999999999999999999999999999999999998654 33455566778999999999999


Q ss_pred             EEeeecCCceEEEEEe
Q 012712          441 SKSQNFSCSILLFEWL  456 (458)
Q Consensus       441 l~s~~~d~~i~~w~~~  456 (458)
                      ||.++-||.|.+||..
T Consensus       535 laVaTldgqItf~d~~  550 (893)
T KOG0291|consen  535 LAVATLDGQITFFDIK  550 (893)
T ss_pred             EEEEEecceEEEEEhh
Confidence            9999999999999964

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.6e-45  Score=274.20  Aligned_cols=297  Identities=16%  Similarity=0.245  Sum_probs=251.7

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      .-+|++++.|.+||+|...+|.+..                     +++...+.|+.+...||++.||+++. ..|++||
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~r---------------------Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD   67 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSR---------------------TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYD   67 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEE---------------------EEecCccceeeEEEcCCcchhhhccC-CeeEEEE
Confidence            3569999999999999999999884                     47766789999999999999999887 5799999


Q ss_pred             CCCcce--eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEE
Q 012712           90 WKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY  167 (458)
Q Consensus        90 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  167 (458)
                      +.++.+  +..+ .+|+..|+++.|..  +|+.+++|++||+++|||++......   ...|..+|+++..+|+. ..|+
T Consensus        68 ~~S~np~Pv~t~-e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlhpnQ-teLi  140 (311)
T KOG0315|consen   68 LNSNNPNPVATF-EGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLHPNQ-TELI  140 (311)
T ss_pred             ccCCCCCceeEE-eccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccch---hccCCCCcceEEecCCc-ceEE
Confidence            988764  5666 79999999999999  99999999999999999999854433   44578999999999998 5789


Q ss_pred             EecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCC
Q 012712          168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP  247 (458)
Q Consensus       168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  247 (458)
                      ++..+|.|++||+.+..+...+...         ....+.++...|| +.+++.+...|..++|++-.....        
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe---------~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~--------  202 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPE---------DDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTA--------  202 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCC---------CCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCcc--------
Confidence            9999999999999988665444321         3347899999998 789999999999999999874422        


Q ss_pred             CCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 012712          248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN  326 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (458)
                       ..+.|...+..|.+.+..+.+||++++||+++.+ +++||+.++-                                  
T Consensus       203 -s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~----------------------------------  247 (311)
T KOG0315|consen  203 -SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF----------------------------------  247 (311)
T ss_pred             -ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc----------------------------------
Confidence             2234556677789999999999999999999855 8999998863                                  


Q ss_pred             cccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEec
Q 012712          327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH  394 (458)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  394 (458)
                         .+....+.+|...  +...+| |.||+||++|+.|+.+++|++..++.++...+|.....+++..
T Consensus       248 ---~kle~~l~gh~rW--vWdc~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  248 ---FKLELVLTGHQRW--VWDCAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ---eeeEEEeecCCce--EEeeee-ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence               2445677888874  899998 9999999999999999999999999999999998887777754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-44  Score=273.47  Aligned_cols=292  Identities=16%  Similarity=0.233  Sum_probs=239.9

Q ss_pred             eeeeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCC-----cceeeeeccCCCcceeEEEEccCCCCeEEEEE
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT-----ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC  124 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  124 (458)
                      +.+..++++|++.|+.++..+. .+.|++++.|.++.+|++..     |..+..+ .+|...|..+..++  |+++.+++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~--dg~~alS~   81 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSS--DGNFALSA   81 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEcc--CCceEEec
Confidence            3455689999999999999987 47889999999999999854     4455666 89999999999999  99999999


Q ss_pred             cCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeec
Q 012712          125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV  204 (458)
Q Consensus       125 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (458)
                      +.|+++++||+.+++....  +.+|...|.+++|+|++ ..+++|+.|.+|++||............         .+..
T Consensus        82 swD~~lrlWDl~~g~~t~~--f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~---------~~~~  149 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTRR--FVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHED---------SHRE  149 (315)
T ss_pred             cccceEEEEEecCCcEEEE--EEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecC---------CCcC
Confidence            9999999999999866554  89999999999999999 6799999999999999876543322221         0245


Q ss_pred             ceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712          205 NLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF  283 (458)
Q Consensus       205 ~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  283 (458)
                      .|.|+.|+|.. .-+|++++.|++|++||+++.+.                                             
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---------------------------------------------  184 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---------------------------------------------  184 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---------------------------------------------
Confidence            79999999973 46889999999999999987642                                             


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~  363 (458)
                                                                       ...+.+|...  ++.+++ ||||..+++|+.
T Consensus       185 -------------------------------------------------~~~~~gh~~~--v~t~~v-SpDGslcasGgk  212 (315)
T KOG0279|consen  185 -------------------------------------------------RTTFIGHSGY--VNTVTV-SPDGSLCASGGK  212 (315)
T ss_pred             -------------------------------------------------hhcccccccc--EEEEEE-CCCCCEEecCCC
Confidence                                                             2233445553  788888 999999999999


Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc-----cccc-----cccEEEEE
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT-----LPTN-----IEQVCFSI  433 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~-----~~~v~~~~  433 (458)
                      ||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||++++..+.     ..+.     .....+++
T Consensus       213 dg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsla  290 (315)
T KOG0279|consen  213 DGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLA  290 (315)
T ss_pred             CceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEE
Confidence            9999999999999988876 778999999999877776554 5569999999875531     1222     22367899


Q ss_pred             EecCCcEEEeeecCCceEEEEEe
Q 012712          434 YSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       434 ~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      ||+||..|++|-.|+.|++|+.-
T Consensus       291 ws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  291 WSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EcCCCcEEEeeecCCcEEEEEee
Confidence            99999999999999999999863

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.1e-44  Score=292.86  Aligned_cols=326  Identities=17%  Similarity=0.229  Sum_probs=277.4

Q ss_pred             eecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcc--ee--eee---------ccCCCcceeEEEEccCCCCeEEE
Q 012712           57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTER--VK--LSF---------HSGHNDNVFQAKIMPFTDDRSIV  122 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~--~~--~~~---------~~~~~~~i~~~~~~~~~~~~~l~  122 (458)
                      +..|+.+|.+.+|+|-.. .|++++.|...++|++....  ..  ..+         .......|++++|+.  +|..||
T Consensus       174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~--~G~~La  251 (524)
T KOG0273|consen  174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN--DGTLLA  251 (524)
T ss_pred             eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC--CCCeEE
Confidence            334999999999999765 89999999999999987511  10  111         012245799999999  999999


Q ss_pred             EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712          123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT  202 (458)
Q Consensus       123 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  202 (458)
                      +|+.||.+++|+... .....  +..|.++|.++.|+..| .+|++++.|+++.+||..++...+.+..+.         
T Consensus       252 tG~~~G~~riw~~~G-~l~~t--l~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s---------  318 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDG-NLIST--LGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHS---------  318 (524)
T ss_pred             EeecCcEEEEEecCc-hhhhh--hhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeecc---------
Confidence            999999999999744 44444  78899999999999999 789999999999999999999888887532         


Q ss_pred             ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                       .+-..+.|-.+  .-|++++.|+.|+++.+....               |...+.+|.+.|.++.|+|.|.+|+++++|
T Consensus       319 -~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~---------------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD  380 (524)
T KOG0273|consen  319 -APALDVDWQSN--DEFATSSTDGCIHVCKVGEDR---------------PVKTFIGHHGEVNALKWNPTGSLLASCSDD  380 (524)
T ss_pred             -CCccceEEecC--ceEeecCCCceEEEEEecCCC---------------cceeeecccCceEEEEECCCCceEEEecCC
Confidence             23356777654  689999999999999987654               345566699999999999999999999966


Q ss_pred             -cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC------
Q 012712          283 -FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC------  355 (458)
Q Consensus       283 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------  355 (458)
                       +++||.+..                                      ......+.+|...  |..+.| +|.|      
T Consensus       381 ~TlkiWs~~~--------------------------------------~~~~~~l~~Hske--i~t~~w-sp~g~v~~n~  419 (524)
T KOG0273|consen  381 GTLKIWSMGQ--------------------------------------SNSVHDLQAHSKE--IYTIKW-SPTGPVTSNP  419 (524)
T ss_pred             CeeEeeecCC--------------------------------------Ccchhhhhhhccc--eeeEee-cCCCCccCCC
Confidence             899999876                                      3456677778764  778887 8865      


Q ss_pred             ---cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEE
Q 012712          356 ---EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFS  432 (458)
Q Consensus       356 ---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~  432 (458)
                         ..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+++|+|+.||.|.||++.+++........+.|..+
T Consensus       420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel  499 (524)
T KOG0273|consen  420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL  499 (524)
T ss_pred             cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEE
Confidence               47899999999999999999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEecCCcEEEeeecCCceEEEEEe
Q 012712          433 IYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       433 ~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +|+.+|..|..+-.|+.+++-|+.
T Consensus       500 ~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  500 CWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999999999998875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-42  Score=299.78  Aligned_cols=379  Identities=18%  Similarity=0.232  Sum_probs=303.1

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccc-------cccc---cccccceEE--e-ee-eeEeecCCCceEEEEE
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNF-------ALRR---RASEDLVLR--L-GI-YAKLDKHRGCVNTVSF   69 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~-------~~~~---~~~~~~~~~--~-~~-~~~~~~h~~~v~~~~~   69 (458)
                      +||..+..-|+|-+.||.+.+|..... +....-       ....   ...++...+  + +. ..-+......|++.+|
T Consensus       195 cfF~~~~~~l~tvskdG~l~~W~~~~~-P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f  273 (893)
T KOG0291|consen  195 CFFGANSLDLYTVSKDGALFVWTCDLR-PPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF  273 (893)
T ss_pred             EEeccCcceEEEEecCceEEEEEecCC-CcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence            457777778999999999999998832 110000       0000   001111111  1 11 2223334478999999


Q ss_pred             ecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-CcEEEeecccccceeeeeccc
Q 012712           70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGGVETKLLGK  148 (458)
Q Consensus        70 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-g~i~vw~~~~~~~~~~~~~~~  148 (458)
                      ++.-+.||+|-..|...+|.+.....++.+ .-...+|..+.|+.  .|++||.++.. |.+-||++.+...+..  .++
T Consensus       274 H~~t~~lvvgFssG~f~LyelP~f~lih~L-Sis~~~I~t~~~N~--tGDWiA~g~~klgQLlVweWqsEsYVlK--QQg  348 (893)
T KOG0291|consen  274 HKGTNLLVVGFSSGEFGLYELPDFNLIHSL-SISDQKILTVSFNS--TGDWIAFGCSKLGQLLVWEWQSESYVLK--QQG  348 (893)
T ss_pred             cCCceEEEEEecCCeeEEEecCCceEEEEe-ecccceeeEEEecc--cCCEEEEcCCccceEEEEEeeccceeee--ccc
Confidence            999999999999999999999999988887 45567899999998  89999998864 8999999988777665  789


Q ss_pred             cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712          149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT  228 (458)
Q Consensus       149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  228 (458)
                      |...+++++++||| +++++|+.||.|++||...+-+..++..          |...|+.+.|+.. ++.+++.+.||+|
T Consensus       349 H~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFte----------Hts~Vt~v~f~~~-g~~llssSLDGtV  416 (893)
T KOG0291|consen  349 HSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTE----------HTSGVTAVQFTAR-GNVLLSSSLDGTV  416 (893)
T ss_pred             cccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEecc----------CCCceEEEEEEec-CCEEEEeecCCeE
Confidence            99999999999999 7999999999999999999999888864          5668999999997 7999999999999


Q ss_pred             EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--cEEEEEccCCCCCCCCCCCCcccc
Q 012712          229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTR  306 (458)
Q Consensus       229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~  306 (458)
                      +.||+...+.-              ..+..+......+++..|.|.++++|+.+  .|++|++.+               
T Consensus       417 RAwDlkRYrNf--------------RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT---------------  467 (893)
T KOG0291|consen  417 RAWDLKRYRNF--------------RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT---------------  467 (893)
T ss_pred             Eeeeeccccee--------------eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec---------------
Confidence            99999876632              22333334567899999999999999976  599999998               


Q ss_pred             ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-eEEEEeecCC
Q 012712          307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADR  385 (458)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~  385 (458)
                                             ++.+..+.||+++  |.+++| +|++..|++++.|.+|++||+-.. ..+.+++ +.
T Consensus       468 -----------------------GqllDiLsGHEgP--Vs~l~f-~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~  520 (893)
T KOG0291|consen  468 -----------------------GQLLDILSGHEGP--VSGLSF-SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IR  520 (893)
T ss_pred             -----------------------CeeeehhcCCCCc--ceeeEE-ccccCeEEeccccceEEEEEeeccCceeeeEe-ec
Confidence                                   5678889999997  899998 999999999999999999998654 3445554 56


Q ss_pred             ceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-----------------ccc----cccccEEEEEEecCCcEEEee
Q 012712          386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-----------------TLP----TNIEQVCFSIYSADYWWSKSQ  444 (458)
Q Consensus       386 ~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-----------------~~~----~~~~~v~~~~~s~d~~~l~s~  444 (458)
                      ..+..++|+|||+.||++..||.|.+||+..+...                 .+.    ......+.+++|+||..+++|
T Consensus       521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg  600 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG  600 (893)
T ss_pred             cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec
Confidence            67999999999999999999999999998754222                 001    111238899999999999999


Q ss_pred             ecCCceEEEEEe
Q 012712          445 NFSCSILLFEWL  456 (458)
Q Consensus       445 ~~d~~i~~w~~~  456 (458)
                      +..+.|++|+.-
T Consensus       601 G~sn~iCiY~v~  612 (893)
T KOG0291|consen  601 GESNSICIYDVP  612 (893)
T ss_pred             CCcccEEEEECc
Confidence            999999999853

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-43  Score=267.73  Aligned_cols=286  Identities=18%  Similarity=0.210  Sum_probs=234.3

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW   88 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw   88 (458)
                      +...|++++.|.++.+|++.....                ..-.+++.++||...|..+..++||++.++++.|+++++|
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~----------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW   90 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDI----------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW   90 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCcc----------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence            456799999999999999984311                1224567899999999999999999999999999999999


Q ss_pred             ECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC-CeEEE
Q 012712           89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFY  167 (458)
Q Consensus        89 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~  167 (458)
                      |+.+++..++| .+|...|.+++|+|  |.+.|++|+.|.+|++|++..... .+..-..+.+.|.|+.|+|+. ..+++
T Consensus        91 Dl~~g~~t~~f-~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   91 DLATGESTRRF-VGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EecCCcEEEEE-EecCCceEEEEecC--CCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            99999888888 79999999999999  999999999999999999865443 332233347899999999984 36899


Q ss_pred             EecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCC
Q 012712          168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP  247 (458)
Q Consensus       168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  247 (458)
                      +++.|++|++||+++.+....+..          +...++.++++|| |.++++|+.||.+.+||++.++...       
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~g----------h~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~ly-------  228 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFIG----------HSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLY-------  228 (315)
T ss_pred             EccCCceEEEEccCCcchhhcccc----------ccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeE-------
Confidence            999999999999999887776653          5567999999998 7899999999999999999887422       


Q ss_pred             CCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712          248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT  327 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (458)
                               ..++...|.+++|+|+.-.|+.+.+..|+|||+.++.....+......                       
T Consensus       229 ---------sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g-----------------------  276 (315)
T KOG0279|consen  229 ---------SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIG-----------------------  276 (315)
T ss_pred             ---------eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccc-----------------------
Confidence                     223567899999999999999999999999999987655543311110                       


Q ss_pred             ccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                             . ..........+++| ++||+.|++|-.|+.|++|.+.
T Consensus       277 -------~-s~~~~~~~clslaw-s~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  277 -------P-SSKAGDPICLSLAW-SADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             -------c-ccccCCcEEEEEEE-cCCCcEEEeeecCCcEEEEEee
Confidence                   0 01111224778898 9999999999999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.4e-43  Score=269.75  Aligned_cols=290  Identities=16%  Similarity=0.178  Sum_probs=250.5

Q ss_pred             eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEE
Q 012712           98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH  177 (458)
Q Consensus        98 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  177 (458)
                      +.+++|.+.|+++.|++  |.++|++++.||.+.|||.-+......  ++-....|..++|+|.+ +++++|+.|+...|
T Consensus        49 r~LkGH~~Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~ha--ipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWST--DSRRIVSASQDGKLIVWDSFTTNKVHA--IPLPSSWVMTCAYSPSG-NFVACGGLDNKCSI  123 (343)
T ss_pred             EEecccccceeeeEecC--CcCeEEeeccCCeEEEEEcccccceeE--EecCceeEEEEEECCCC-CeEEecCcCceeEE
Confidence            44589999999999999  999999999999999999988776655  55567899999999999 78999999999999


Q ss_pred             EeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      |++.+.+.........  ...+  |.+.+.|+.|-+|  ..|++++.|.+..+||+++++.               ...+
T Consensus       124 y~ls~~d~~g~~~v~r--~l~g--HtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~---------------~~~f  182 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSR--ELAG--HTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQ---------------TQVF  182 (343)
T ss_pred             Eecccccccccceeee--eecC--ccceeEEEEEcCC--CceEecCCCceEEEEEcccceE---------------EEEe
Confidence            9998663221111110  1122  5668999999985  5899999999999999999874               3456


Q ss_pred             cccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee
Q 012712          258 GDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV  335 (458)
Q Consensus       258 ~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (458)
                      .+|.+.|.++.++| +++.+++|+ |...++||++.                                      ....+.
T Consensus       183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~--------------------------------------~~c~qt  224 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS--------------------------------------GQCVQT  224 (343)
T ss_pred             cCCcccEEEEecCCCCCCeEEecccccceeeeeccC--------------------------------------cceeEe
Confidence            68999999999999 899999988 55899999998                                      567899


Q ss_pred             ecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC--CceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       336 ~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      |.+|+..  |+++.| .|+|.-+++|++|++.++||++..+.+..+...  ..+|++++||..|++|.+|..|.++.+||
T Consensus       225 F~ghesD--INsv~f-fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  225 FEGHESD--INSVRF-FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             ecccccc--cceEEE-ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence            9999985  999999 899999999999999999999999988888632  34799999999999999999999999999


Q ss_pred             CCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          414 PNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       414 ~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      .-.++.. .+.+|..+|.++..+|||.-++||+.|..++||.
T Consensus       302 tlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  302 TLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            8887766 7889999999999999999999999999999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6e-43  Score=270.03  Aligned_cols=295  Identities=20%  Similarity=0.354  Sum_probs=254.8

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      +...+.+|++.|..+.|+|+|.+||||+.|..|.+|++.....-.-.+++|.+.|..+.|.+  |++.|++++.|.+++.
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCGTDKTVRG  116 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEecCCceEEE
Confidence            34457899999999999999999999999999999997554443444479999999999999  9999999999999999


Q ss_pred             eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      ||+++++....  ++.|..-++++.-+.-|+.++.+++.|+++++||+++...++.+.           ...+++++.|.
T Consensus       117 wD~~tG~~~rk--~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-----------~kyqltAv~f~  183 (338)
T KOG0265|consen  117 WDAETGKRIRK--HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-----------NKYQLTAVGFK  183 (338)
T ss_pred             Eecccceeeeh--hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-----------cceeEEEEEec
Confidence            99999998876  889999999999777788899999999999999999999888875           34468999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712          213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM  291 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~  291 (458)
                      .+ +..+.+|+-|+.|++||++.+..               .....+|..+|+.+..+|+|.++.+-+ +.++++||++.
T Consensus       184 d~-s~qv~sggIdn~ikvWd~r~~d~---------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  184 DT-SDQVISGGIDNDIKVWDLRKNDG---------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             cc-ccceeeccccCceeeeccccCcc---------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence            87 68999999999999999998763               446778899999999999999999988 55899999875


Q ss_pred             CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce--eeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC--VTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                      -...                                  .+++..+.+|...  .....++| +|++..+.+|+.|..+++
T Consensus       248 ~~p~----------------------------------~R~v~if~g~~hnfeknlL~csw-sp~~~~i~ags~dr~vyv  292 (338)
T KOG0265|consen  248 FAPS----------------------------------QRCVKIFQGHIHNFEKNLLKCSW-SPNGTKITAGSADRFVYV  292 (338)
T ss_pred             cCCC----------------------------------CceEEEeecchhhhhhhcceeec-cCCCCccccccccceEEE
Confidence            2211                                  2346666665543  23566777 999999999999999999


Q ss_pred             EEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ||......+..+.+|.+.|++++|+|...+|.+++.|++|.+=.
T Consensus       293 wd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  293 WDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             eecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99988899999999999999999999999999999999998744

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1e-42  Score=275.83  Aligned_cols=339  Identities=15%  Similarity=0.162  Sum_probs=274.7

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      -+..|..|+++|.+++.+|+.++++||+.|..-.||+..+++....+ .+|+..|+++.|+.  +|.+||||+.+|.|+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSH--DGTLLATGDMSGKVLV  132 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEcc--CceEEEecCCCccEEE
Confidence            34678999999999999999999999999999999999999977766 89999999999999  9999999999999999


Q ss_pred             eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      |+..++.....  +...-..+.-+.|+|.+ .+|++|+.||.+.+|.+..+...+.+..          +..++++-.|.
T Consensus       133 ~~~stg~~~~~--~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~G----------h~~~ct~G~f~  199 (399)
T KOG0296|consen  133 FKVSTGGEQWK--LDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSG----------HNSPCTCGEFI  199 (399)
T ss_pred             EEcccCceEEE--eecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecC----------CCCCccccccc
Confidence            99998877655  44556778889999988 7899999999999999998766666653          55578999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccC
Q 012712          213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDM  291 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~  291 (458)
                      |+ |+.++++..||+|++|++.+++....              ..........++.++..+..++.|+. +.+++-+..+
T Consensus       200 pd-GKr~~tgy~dgti~~Wn~ktg~p~~~--------------~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s  264 (399)
T KOG0296|consen  200 PD-GKRILTGYDDGTIIVWNPKTGQPLHK--------------ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS  264 (399)
T ss_pred             CC-CceEEEEecCceEEEEecCCCceeEE--------------ecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence            98 79999999999999999999863321              12122345678888888888888874 4677777666


Q ss_pred             CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce-eeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      ++......+                              ..+.....+... ..|..+.+ +..-.+.|+|+-||+|.||
T Consensus       265 gKVv~~~n~------------------------------~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iy  313 (399)
T KOG0296|consen  265 GKVVNCNNG------------------------------TVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIY  313 (399)
T ss_pred             ceEEEecCC------------------------------CCccccccchhhhhhhhhccc-ccccchhhcccccceEEEE
Confidence            543322211                              000111111111 12444444 6667789999999999999


Q ss_pred             EecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCc
Q 012712          371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCS  449 (458)
Q Consensus       371 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~  449 (458)
                      |+...++.... .|..+|..+.|-+ ..+|++++.+|.|+.||..+|+++ ...+|...|.+++.+|+.++++|++.|++
T Consensus       314 D~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  314 DLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             ecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence            99776655544 4888999999998 789999999999999999999877 78999999999999999999999999999


Q ss_pred             eEEEEE
Q 012712          450 ILLFEW  455 (458)
Q Consensus       450 i~~w~~  455 (458)
                      .+||+.
T Consensus       392 a~VF~v  397 (399)
T KOG0296|consen  392 ALVFEV  397 (399)
T ss_pred             EEEEec
Confidence            999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-43  Score=278.06  Aligned_cols=306  Identities=16%  Similarity=0.241  Sum_probs=265.7

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      +..+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+ ++|...+..++|+.  .|.+|++++.|=.
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a--~Gk~l~tcSsDl~  173 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDA--SGKYLATCSSDLS  173 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEec--CccEEEecCCccc
Confidence            44677888999999999999999999999999999999999999996555 89999999999999  9999999999999


Q ss_pred             EEEeecccc-cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          130 VRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       130 i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      +++||..+. +++  +.+.+|...|.++.|-|.| ..+++++.|.+|+.|++.++.++..+..          +...|..
T Consensus       174 ~~LWd~~~~~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~----------h~ewvr~  240 (406)
T KOG0295|consen  174 AKLWDFDTFFRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPG----------HSEWVRM  240 (406)
T ss_pred             hhheeHHHHHHHH--HHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccC----------chHhEEE
Confidence            999999774 333  3377899999999999999 7899999999999999999999998875          3347889


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT  288 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~  288 (458)
                      +..+.| +.++++++.|.++++|-+.+.+.               ......|+.+|.+++|-|...+=            
T Consensus       241 v~v~~D-Gti~As~s~dqtl~vW~~~t~~~---------------k~~lR~hEh~vEci~wap~~~~~------------  292 (406)
T KOG0295|consen  241 VRVNQD-GTIIASCSNDQTLRVWVVATKQC---------------KAELREHEHPVECIAWAPESSYP------------  292 (406)
T ss_pred             EEecCC-eeEEEecCCCceEEEEEeccchh---------------hhhhhccccceEEEEecccccCc------------
Confidence            999998 79999999999999999988742               33556688899999998864210            


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                                                                    .         |....--...++++.+++.|++|+
T Consensus       293 ----------------------------------------------~---------i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  293 ----------------------------------------------S---------ISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             ----------------------------------------------c---------hhhccCCCCCccEEEeecccceEE
Confidence                                                          0         000000012467999999999999


Q ss_pred             EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecC
Q 012712          369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFS  447 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d  447 (458)
                      +||+.++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||+.+.++. .+..|..-++++.|..+-.+++||+.|
T Consensus       318 ~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  318 IWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             EEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence            9999999999999999999999999999999999999999999999998776 566777779999999999999999999


Q ss_pred             CceEEEE
Q 012712          448 CSILLFE  454 (458)
Q Consensus       448 ~~i~~w~  454 (458)
                      ..+++|+
T Consensus       398 qt~KvwE  404 (406)
T KOG0295|consen  398 QTVKVWE  404 (406)
T ss_pred             ceeeeee
Confidence            9999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-43  Score=278.00  Aligned_cols=291  Identities=20%  Similarity=0.317  Sum_probs=253.1

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR   83 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   83 (458)
                      +.|.|+..+++++++|++|++||..+|++..                     .++||.+.|..++|+..|++||+++.|-
T Consensus       114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---------------------~LrGHt~sv~di~~~a~Gk~l~tcSsDl  172 (406)
T KOG0295|consen  114 VIFHPSEALVVSASEDATIKVFDTETGELER---------------------SLRGHTDSVFDISFDASGKYLATCSSDL  172 (406)
T ss_pred             eeeccCceEEEEecCCceEEEEEccchhhhh---------------------hhhccccceeEEEEecCccEEEecCCcc
Confidence            4578999999999999999999999999864                     4999999999999999999999999998


Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP  163 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  163 (458)
                      .+++||.++.......+.+|...|.+++|-|  .|.+|++++.|.+|+.|++.++.++.+  +.+|...|..+..+.|| 
T Consensus       173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P--~gd~ilS~srD~tik~We~~tg~cv~t--~~~h~ewvr~v~v~~DG-  247 (406)
T KOG0295|consen  173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP--LGDHILSCSRDNTIKAWECDTGYCVKT--FPGHSEWVRMVRVNQDG-  247 (406)
T ss_pred             chhheeHHHHHHHHHHhcCcccceeeEEEEe--cCCeeeecccccceeEEecccceeEEe--ccCchHhEEEEEecCCe-
Confidence            8999999874333334479999999999999  899999999999999999999998877  99999999999999999 


Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      .++++++.|.++++|-+.++++...++.          +..+|.+++|.|.. .  +....       +. ++.      
T Consensus       248 ti~As~s~dqtl~vW~~~t~~~k~~lR~----------hEh~vEci~wap~~-~--~~~i~-------~a-t~~------  300 (406)
T KOG0295|consen  248 TIIASCSNDQTLRVWVVATKQCKAELRE----------HEHPVECIAWAPES-S--YPSIS-------EA-TGS------  300 (406)
T ss_pred             eEEEecCCCceEEEEEeccchhhhhhhc----------cccceEEEEecccc-c--Ccchh-------hc-cCC------
Confidence            8999999999999999999988777764          44479999999862 1  11100       00 000      


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP  322 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (458)
                                        .        ..++++.+++ |++|++||+.+                               
T Consensus       301 ------------------~--------~~~~~l~s~SrDktIk~wdv~t-------------------------------  323 (406)
T KOG0295|consen  301 ------------------T--------NGGQVLGSGSRDKTIKIWDVST-------------------------------  323 (406)
T ss_pred             ------------------C--------CCccEEEeecccceEEEEeccC-------------------------------
Confidence                              0        0456888888 44799999988                               


Q ss_pred             CCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEE
Q 012712          323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLAS  402 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  402 (458)
                             ..++.++.+|.+.  |..++| +|.|+||+++.+|+++++||+++++++.++..|..-++++.|+.+..+++|
T Consensus       324 -------g~cL~tL~ghdnw--Vr~~af-~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvT  393 (406)
T KOG0295|consen  324 -------GMCLFTLVGHDNW--VRGVAF-SPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVT  393 (406)
T ss_pred             -------CeEEEEEecccce--eeeeEE-cCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEe
Confidence                   5678899999995  999999 999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcEEEecC
Q 012712          403 SGIESDIKILTP  414 (458)
Q Consensus       403 ~~~d~~i~iw~~  414 (458)
                      |+-|.++++|..
T Consensus       394 GsVdqt~KvwEc  405 (406)
T KOG0295|consen  394 GSVDQTVKVWEC  405 (406)
T ss_pred             ccccceeeeeec
Confidence            999999999964

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-41  Score=258.34  Aligned_cols=295  Identities=19%  Similarity=0.216  Sum_probs=241.1

Q ss_pred             eeeeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCC---cceeeeeccCCCcceeEEEEccCCCCeEEEEEcC
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA  126 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  126 (458)
                      +..++.+++|++.|..++|+|- |..||||+.|+.|++|+...   -.+...+..+|+..|.+++|+|  .|++|++++.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La~aSF   81 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLASASF   81 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEEEeec
Confidence            4566789999999999999998 88999999999999999884   3344445568999999999999  9999999999


Q ss_pred             CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      |.++.||.-..++-.....+.+|..+|.+++|+++| ++|++++.|..|.+|.+..+.........+     .  |...|
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~-----~--HtqDV  153 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQ-----E--HTQDV  153 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeec-----c--ccccc
Confidence            999999998776655566699999999999999999 799999999999999988665444333322     2  44468


Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL  286 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i  286 (458)
                      ..+.|+|. ..+|++++.|.+|++|+-...                                    +.            
T Consensus       154 K~V~WHPt-~dlL~S~SYDnTIk~~~~~~d------------------------------------dd------------  184 (312)
T KOG0645|consen  154 KHVIWHPT-EDLLFSCSYDNTIKVYRDEDD------------------------------------DD------------  184 (312)
T ss_pred             cEEEEcCC-cceeEEeccCCeEEEEeecCC------------------------------------CC------------
Confidence            88999997 679999999999999976421                                    00            


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR  366 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~  366 (458)
                                                                 ..+.+++.+|.+  +|.+++| ++.|..|+++++|++
T Consensus       185 -------------------------------------------W~c~~tl~g~~~--TVW~~~F-~~~G~rl~s~sdD~t  218 (312)
T KOG0645|consen  185 -------------------------------------------WECVQTLDGHEN--TVWSLAF-DNIGSRLVSCSDDGT  218 (312)
T ss_pred             -------------------------------------------eeEEEEecCccc--eEEEEEe-cCCCceEEEecCCcc
Confidence                                                       234566777777  5999998 999999999999999


Q ss_pred             EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc----c--c--cccccccccEEEEEEecC-
Q 012712          367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA----D--R--ATLPTNIEQVCFSIYSAD-  437 (458)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~----~--~--~~~~~~~~~v~~~~~s~d-  437 (458)
                      ++||...+.    .-..|+..++.++|.  ...||+++.|+.|+++.-...    .  .  .....|...|+++.|.|. 
T Consensus       219 v~Iw~~~~~----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~  292 (312)
T KOG0645|consen  219 VSIWRLYTD----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV  292 (312)
T ss_pred             eEeeeeccC----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence            999986521    112477899999997  568999999999999987643    1  1  133457778999999996 


Q ss_pred             CcEEEeeecCCceEEEEEe
Q 012712          438 YWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       438 ~~~l~s~~~d~~i~~w~~~  456 (458)
                      ...|++++.||.|++|++.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            5889999999999999975

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.1e-44  Score=292.50  Aligned_cols=295  Identities=19%  Similarity=0.288  Sum_probs=255.6

Q ss_pred             eeeeEeecCCCceEEEEEec-CCCEEEEecCCCeEEEEECCC-cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      +.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. ++++.++ .+|..+|.+++|++  +|..+++++.|+.
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~--~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNN--CGTSFLSASFDRF  281 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccc--cCCeeeeeeccee
Confidence            67788999999999999999 889999999999999999976 6777777 89999999999999  9999999999999


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      |++||+++++......   ....++++.|+|+++++|++|+.|+.|+.||+++++.++.+..          +-+.|..+
T Consensus       282 lKlwDtETG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------hLg~i~~i  348 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------HLGAILDI  348 (503)
T ss_pred             eeeeccccceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------hhhheeee
Confidence            9999999999877632   3356789999999989999999999999999999998887753          45579999


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT  288 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~  288 (458)
                      .|-++ +..+++.+.|+.+++|+.+..-...              .......-...++..+|++.++++-+ ++.|.+|.
T Consensus       349 ~F~~~-g~rFissSDdks~riWe~~~~v~ik--------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  349 TFVDE-GRRFISSSDDKSVRIWENRIPVPIK--------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             EEccC-CceEeeeccCccEEEEEcCCCccch--------------hhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence            99997 7899999999999999998764322              12222344567899999999999988 55799998


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                      +.....                                   ....+.+.+|.....-..+.| ||||.+|++|+.||.+.
T Consensus       414 ~~~~~r-----------------------------------~nkkK~feGh~vaGys~~v~f-SpDG~~l~SGdsdG~v~  457 (503)
T KOG0282|consen  414 TVPPFR-----------------------------------LNKKKRFEGHSVAGYSCQVDF-SPDGRTLCSGDSDGKVN  457 (503)
T ss_pred             cccccc-----------------------------------cCHhhhhcceeccCceeeEEE-cCCCCeEEeecCCccEE
Confidence            654321                                   334567889988777788898 99999999999999999


Q ss_pred             EEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEec
Q 012712          369 IWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILT  413 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~  413 (458)
                      +||.++.+++..+++|.+++..+.|+|... .+||++.||.|++|+
T Consensus       458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999999999999999754 799999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7e-42  Score=271.06  Aligned_cols=324  Identities=15%  Similarity=0.198  Sum_probs=267.1

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR   84 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   84 (458)
                      +.+|+.++++||+.|..-.+|++.+|..+                     ..+.+|++.|+++.||.||.+||||+.+|.
T Consensus        71 sl~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------~eltgHKDSVt~~~FshdgtlLATGdmsG~  129 (399)
T KOG0296|consen   71 SLHPNNNLVATGGGDDLAFLWDISTGEFA---------------------GELTGHKDSVTCCSFSHDGTLLATGDMSGK  129 (399)
T ss_pred             EeCCCCceEEecCCCceEEEEEccCCcce---------------------eEecCCCCceEEEEEccCceEEEecCCCcc
Confidence            35789999999999999999999999866                     458999999999999999999999999999


Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH  164 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  164 (458)
                      |+||+..++.....+. ..-+.|.=+.|+|  .+..|+.|+.||.+.+|.+.++...+.  +.+|+.++++=.|.|+| +
T Consensus       130 v~v~~~stg~~~~~~~-~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv--~~Gh~~~ct~G~f~pdG-K  203 (399)
T KOG0296|consen  130 VLVFKVSTGGEQWKLD-QEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKV--MSGHNSPCTCGEFIPDG-K  203 (399)
T ss_pred             EEEEEcccCceEEEee-cccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeE--ecCCCCCcccccccCCC-c
Confidence            9999999998877773 4556788899999  999999999999999999988654443  89999999999999999 6


Q ss_pred             EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccC
Q 012712          165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF  244 (458)
Q Consensus       165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  244 (458)
                      .++++..||+|++||+.++++...+....         .....++.++.. +..++.|..++.+++-+..+++......-
T Consensus       204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e---------~~~~~~~~~~~~-~~~~~~g~~e~~~~~~~~~sgKVv~~~n~  273 (399)
T KOG0296|consen  204 RILTGYDDGTIIVWNPKTGQPLHKITQAE---------GLELPCISLNLA-GSTLTKGNSEGVACGVNNGSGKVVNCNNG  273 (399)
T ss_pred             eEEEEecCceEEEEecCCCceeEEecccc---------cCcCCccccccc-cceeEeccCCccEEEEccccceEEEecCC
Confidence            89999999999999999998776654221         224578888886 78899999999999988888775443221


Q ss_pred             CCCCCCcCCCccccccccceeEEEeCC---CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          245 GQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                      .       ...+...+...+.++.+.|   .=.+.|+|+ +++|.|||+...                            
T Consensus       274 ~-------~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------------------------  318 (399)
T KOG0296|consen  274 T-------VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------------------------  318 (399)
T ss_pred             C-------CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------------------------
Confidence            1       1222233344455555444   456778888 779999999863                            


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeE
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL  400 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  400 (458)
                                 .++..-.|...  |..+.| .+ ..+|++++.||.|+.||.++|+++.++.+|...|.+++.+|+.+++
T Consensus       319 -----------~~R~~c~he~~--V~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~v  383 (399)
T KOG0296|consen  319 -----------TLRHICEHEDG--VTKLKW-LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLV  383 (399)
T ss_pred             -----------hhheeccCCCc--eEEEEE-cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEE
Confidence                       22333345554  899998 66 6899999999999999999999999999999999999999999999


Q ss_pred             EEeecCCcEEEecCC
Q 012712          401 ASSGIESDIKILTPN  415 (458)
Q Consensus       401 ~s~~~d~~i~iw~~~  415 (458)
                      +|+|.|++.+|+++.
T Consensus       384 vT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  384 VTVSDDNTALVFEVP  398 (399)
T ss_pred             EEecCCCeEEEEecC
Confidence            999999999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-41  Score=292.44  Aligned_cols=400  Identities=16%  Similarity=0.170  Sum_probs=302.6

Q ss_pred             eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC
Q 012712           12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK   91 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~   91 (458)
                      +.++++.-..|.+||+.+|+..+..+                   ...-...|+|++-+|+...||.|..||.|+||+..
T Consensus        35 r~va~~a~E~vn~WdlRtge~~~~l~-------------------~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~   95 (888)
T KOG0306|consen   35 RAVAVSALEQVNIWDLRTGEIEKKLI-------------------LLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLE   95 (888)
T ss_pred             cEEEEeccccEeEEeeecchhhhhhh-------------------hhcccceEEEeeccCCcceEEEEecCceEEeeccC
Confidence            34444446679999999996664411                   12234689999999999999999999999999999


Q ss_pred             CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC
Q 012712           92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE  171 (458)
Q Consensus        92 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  171 (458)
                      ++.....+ .+|...|+.+.|..  .|..|++||.|+.|.+||+-.......  +.+|.+.|+.+-|..+. .++++.+.
T Consensus        96 s~~~~~tf-ngHK~AVt~l~fd~--~G~rlaSGskDt~IIvwDlV~E~Gl~r--L~GHkd~iT~~~F~~~~-~~lvS~sK  169 (888)
T KOG0306|consen   96 SEEILITF-NGHKAAVTTLKFDK--IGTRLASGSKDTDIIVWDLVGEEGLFR--LRGHKDSITQALFLNGD-SFLVSVSK  169 (888)
T ss_pred             CCceeeee-cccccceEEEEEcc--cCceEeecCCCccEEEEEeccceeeEE--eecchHHHhHHhccCCC-eEEEEecc
Confidence            88877777 89999999999999  999999999999999999987666655  89999999999998866 78999999


Q ss_pred             CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC------------
Q 012712          172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD------------  239 (458)
Q Consensus       172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~------------  239 (458)
                      |+.|++||+++..+..+...          +...+.++++.+   +.+++++.|+.+++|++....-.            
T Consensus       170 Ds~iK~WdL~tqhCf~Thvd----------~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~  236 (888)
T KOG0306|consen  170 DSMIKFWDLETQHCFETHVD----------HRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR  236 (888)
T ss_pred             CceEEEEecccceeeeEEec----------ccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeecc
Confidence            99999999999998877654          555789999986   47888889999999998110000            


Q ss_pred             C---------Cc----------------------------------------------c-------C-------------
Q 012712          240 G---------ST----------------------------------------------D-------F-------------  244 (458)
Q Consensus       240 ~---------~~----------------------------------------------~-------~-------------  244 (458)
                      +         ..                                              .       .             
T Consensus       237 G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~  316 (888)
T KOG0306|consen  237 GTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET  316 (888)
T ss_pred             ceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence            0         00                                              0       0             


Q ss_pred             ----------------CCC-----------------CCC-------cCCCccccccccceeEEEeCCCCcEEEEecCCcE
Q 012712          245 ----------------GQP-----------------ADY-------FCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI  284 (458)
Q Consensus       245 ----------------~~~-----------------~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i  284 (458)
                                      ..+                 ...       ........+|...|.+++++.+...+++++.+.+
T Consensus       317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Si  396 (888)
T KOG0306|consen  317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESI  396 (888)
T ss_pred             eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcE
Confidence                            000                 000       0000123567889999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCcccc------------------------------------------CC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA------------------------------------------SP  322 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~  322 (458)
                      ++|+..+.+....++..    ......|.|+...+.                                          ..
T Consensus       397 kiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~  472 (888)
T KOG0306|consen  397 KIWNRDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG  472 (888)
T ss_pred             EEEEccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe
Confidence            99999988766665532    222333333333332                                          22


Q ss_pred             CCCCcccccCceeecC---cc-------------ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc
Q 012712          323 STANTDVRIAPQVYKG---HR-------------NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH  386 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~~---~~-------------~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (458)
                      +.+.............   ..             -...|.++.+ ||||++||.+--|+++++|-+.+.+..-.+.||.-
T Consensus       473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~-Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL  551 (888)
T KOG0306|consen  473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV-SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL  551 (888)
T ss_pred             cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE-cCCCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence            2222222111111111   00             0113667776 77777777777777777777777777778889999


Q ss_pred             eeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          387 VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ||.+|..|||+++++|||.|.+|+||-++-|.+. .+.+|...|.++.|-|+...+.+++.|+.|+-||
T Consensus       552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            9999999999999999999999999999999886 7889999999999999999999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-42  Score=279.20  Aligned_cols=297  Identities=22%  Similarity=0.301  Sum_probs=246.5

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce---eeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      .+..+.+..|++.|.-+.||++|+||||++.|.+..+|++.....   .+++ .+|..+|..+.|+|  |.++|++|+.+
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSP--DdryLlaCg~~  290 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSP--DDRYLLACGFD  290 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECC--CCCeEEecCch
Confidence            356678899999999999999999999999999999998865443   3444 79999999999999  99999999999


Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      ..+.+||+.++...... -.++...+.+++|.||+ ..+++|+.|+.+..||+.... .......         ....|.
T Consensus       291 e~~~lwDv~tgd~~~~y-~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv---------r~~~v~  358 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLY-PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-LGNWEGV---------RDPKVH  358 (519)
T ss_pred             HheeeccCCcchhhhhc-ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-hhccccc---------ccceeE
Confidence            99999999999876543 23366889999999999 679999999999999987654 2222211         223589


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL  286 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i  286 (458)
                      +++..+| +.++++.+.|..|++|+..+....+                ......+|+++..|.+++++.+.- +..+.+
T Consensus       359 dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~----------------lise~~~its~~iS~d~k~~LvnL~~qei~L  421 (519)
T KOG0293|consen  359 DLAITYD-GKYVLLVTVDKKIRLYNREARVDRG----------------LISEEQPITSFSISKDGKLALVNLQDQEIHL  421 (519)
T ss_pred             EEEEcCC-CcEEEEEecccceeeechhhhhhhc----------------cccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence            9999998 6788888899999999988754211                112356899999999999877766 558999


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR  366 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~  366 (458)
                      ||+..                                      ...++.+.||.....+..-+|--.+..++++|++|+.
T Consensus       422 WDl~e--------------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k  463 (519)
T KOG0293|consen  422 WDLEE--------------------------------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK  463 (519)
T ss_pred             eecch--------------------------------------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence            99986                                      5667888898877777777773345589999999999


Q ss_pred             EEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCcc
Q 012712          367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA  417 (458)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~  417 (458)
                      |+||+..+++++.++.||...|++++|+|... ++|++|+||+||||.+...
T Consensus       464 vyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  464 VYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999999999999999999999999665 8999999999999987643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.4e-43  Score=282.37  Aligned_cols=280  Identities=18%  Similarity=0.283  Sum_probs=240.7

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      -+.+|..+.|.|+|+.|++|+..|.+.+|+...... ..++..|..+|.++.|++  ++.++++|+.+|.|++|+.....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-EtilQaHDs~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-ETILQAHDSPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeH-HHHhhhhcccceeEEEcc--CCCEEEEcCCCceEEecccchhh
Confidence            356899999999999999999999999999754443 334478999999999999  99999999999999999986554


Q ss_pred             ceeeeeccc-cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          140 GVETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       140 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      ...   +.. |...|++++|+|+. ..|++++.||+|+|||....+....+..          +.-.|.+++|+|. ..+
T Consensus       172 Vk~---~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~G----------HgwdVksvdWHP~-kgL  236 (464)
T KOG0284|consen  172 VKI---IQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRG----------HGWDVKSVDWHPT-KGL  236 (464)
T ss_pred             hHH---hhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheecc----------CCCCcceeccCCc-cce
Confidence            332   444 45899999999987 6799999999999999998887777653          4447899999998 679


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~  298 (458)
                      +++|+.|..|++||.++++                                                             
T Consensus       237 iasgskDnlVKlWDprSg~-------------------------------------------------------------  255 (464)
T KOG0284|consen  237 IASGSKDNLVKLWDPRSGS-------------------------------------------------------------  255 (464)
T ss_pred             eEEccCCceeEeecCCCcc-------------------------------------------------------------
Confidence            9999999999999998764                                                             


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  378 (458)
                                                       ++..+.+|.+  .|..+.| .|++++|++++.|..++++|+.+.+.+
T Consensus       256 ---------------------------------cl~tlh~HKn--tVl~~~f-~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  256 ---------------------------------CLATLHGHKN--TVLAVKF-NPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             ---------------------------------hhhhhhhccc--eEEEEEE-cCCCCeeEEccCCceEEEEehhHhHHH
Confidence                                             2334455666  4899998 999999999999999999999999999


Q ss_pred             EEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          379 RVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      .++++|...+++++|+|-. .+|.+|+.||.|..|.+...+.+  .-.+|...|++++|+|-|..|++|+.|.++++|-
T Consensus       300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            9999999999999999965 47889999999999999855444  3467888899999999999999999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.9e-42  Score=270.14  Aligned_cols=293  Identities=20%  Similarity=0.314  Sum_probs=255.7

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      .+++.+.+.+|.+.|.|+++.|..++|+||+.|++|+|||+.+++...++ .+|...|..+++++  -..++++++.|+.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~--rHpYlFs~gedk~  216 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSK--RHPYLFSAGEDKQ  216 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecc--cCceEEEecCCCe
Confidence            34788899999999999999999999999999999999999999998887 89999999999999  8999999999999


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      |+.||++.++.+..  +.+|-..|.+++.+|.- .+|++|+.|.++++||+++...+..+..          |..+|.++
T Consensus       217 VKCwDLe~nkvIR~--YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~G----------H~~~V~~V  283 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRH--YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSG----------HTNPVASV  283 (460)
T ss_pred             eEEEechhhhhHHH--hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecC----------CCCcceeE
Confidence            99999998887765  88999999999999988 7899999999999999999988877764          55579999


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ  289 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~  289 (458)
                      .+.|.+ -.+++|+.|++|++||++.++.               ......|...+++++.+|....+|+++.+.|+-|++
T Consensus       284 ~~~~~d-pqvit~S~D~tvrlWDl~agkt---------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~  347 (460)
T KOG0285|consen  284 MCQPTD-PQVITGSHDSTVRLWDLRAGKT---------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKL  347 (460)
T ss_pred             EeecCC-CceEEecCCceEEEeeeccCce---------------eEeeecccceeeEEecCCchhhhhccCCccceeccC
Confidence            999874 5889999999999999999863               344566889999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                      ..+                                      .....+.+|...  +++++. ..| .++++|+++|.+.+
T Consensus       348 p~g--------------------------------------~f~~nlsgh~~i--intl~~-nsD-~v~~~G~dng~~~f  385 (460)
T KOG0285|consen  348 PEG--------------------------------------EFLQNLSGHNAI--INTLSV-NSD-GVLVSGGDNGSIMF  385 (460)
T ss_pred             Ccc--------------------------------------chhhccccccce--eeeeee-ccC-ceEEEcCCceEEEE
Confidence            873                                      445567788875  788876 555 48889999999999


Q ss_pred             EEecCCeEEEEeec--------CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          370 WKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       370 wd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      ||.++|-..+..+.        ....|.+.+|...|..|++|..|.+|++|.-+.
T Consensus       386 wdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  386 WDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             EecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            99998865544321        235689999999999999999999999997553

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.4e-43  Score=280.14  Aligned_cols=280  Identities=19%  Similarity=0.322  Sum_probs=235.4

Q ss_pred             CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      |.+|.+.|+|++|++|+..|.+.+|+..+-                     .....++.|..+|+++.|+++|.++++|+
T Consensus        99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD  157 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------NFETILQAHDSPVRTMKWSHNGTWMISGD  157 (464)
T ss_pred             eeeEEEcCCCceeEeecccccEEEecCcee---------------------eHHHHhhhhcccceeEEEccCCCEEEEcC
Confidence            346778999999999999999999998621                     12234678999999999999999999999


Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      .+|.|++|+..-.. ++.+...|...|++++|+|  ....+++|+.||+|+|||....+....  +.+|.-.|.++.|+|
T Consensus       158 ~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP  232 (464)
T KOG0284|consen  158 KGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHP  232 (464)
T ss_pred             CCceEEecccchhh-hHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCC
Confidence            99999999976544 4555456669999999999  899999999999999999988776554  799999999999999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG  240 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  240 (458)
                      .. .++++++.|..|++||.++++++..+..          +...|..+.|+|+ +++|++++.|..++++|+++.+.  
T Consensus       233 ~k-gLiasgskDnlVKlWDprSg~cl~tlh~----------HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkE--  298 (464)
T KOG0284|consen  233 TK-GLIASGSKDNLVKLWDPRSGSCLATLHG----------HKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKE--  298 (464)
T ss_pred             cc-ceeEEccCCceeEeecCCCcchhhhhhh----------ccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHH--
Confidence            98 6899999999999999999999887764          5557999999998 69999999999999999986432  


Q ss_pred             CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                                                                                                      
T Consensus       299 --------------------------------------------------------------------------------  298 (464)
T KOG0284|consen  299 --------------------------------------------------------------------------------  298 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCCeEEEEe-ecCCceeeEEEecCCCC
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHST  398 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~  398 (458)
                                  +..+++|+..  ++++.| +| ...+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|-|.
T Consensus       299 ------------l~~~r~Hkkd--v~~~~W-hP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh  363 (464)
T KOG0284|consen  299 ------------LFTYRGHKKD--VTSLTW-HPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH  363 (464)
T ss_pred             ------------HHHhhcchhh--heeecc-ccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccce
Confidence                        2333444442  556665 44 3457889999999999999866666555 57999999999999999


Q ss_pred             eEEEeecCCcEEEecCC
Q 012712          399 VLASSGIESDIKILTPN  415 (458)
Q Consensus       399 ~l~s~~~d~~i~iw~~~  415 (458)
                      +|++|+.|.++++|.-.
T Consensus       364 il~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  364 ILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eEeecCCCcceeeeccC
Confidence            99999999999999754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-40  Score=271.61  Aligned_cols=319  Identities=18%  Similarity=0.255  Sum_probs=264.3

Q ss_pred             CCCCCC-eEEEeeCCCcEEEEEccc--cccccccccccccccccceEEeeeeeEe--ec----CCCceEEEEEecCCCEE
Q 012712            6 NNNNNK-RARTSVDKALVDVWLREL--GQLSTRNFALRRRASEDLVLRLGIYAKL--DK----HRGCVNTVSFNTDGDIL   76 (458)
Q Consensus         6 ~~~~~~-~l~~~~~d~~i~iw~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----h~~~v~~~~~s~~~~~l   76 (458)
                      ++|-.. +|++|+.|.+.|+|++..  .....+               +.+.+.+  -+    -...|++++|+.+|..|
T Consensus       186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---------------~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L  250 (524)
T KOG0273|consen  186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---------------LVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL  250 (524)
T ss_pred             cCchhhhhhhccCCccceeeeeehhhccccchh---------------hhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence            455544 899999999999999984  111100               0011111  11    23579999999999999


Q ss_pred             EEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEE
Q 012712           77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL  156 (458)
Q Consensus        77 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~  156 (458)
                      |+|+.||.+++|+.. |..+..+ ..|.++|.++.|+.  .|.+|++++.|+++.+||..++...+.  +..|..+...+
T Consensus       251 atG~~~G~~riw~~~-G~l~~tl-~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~--f~~~s~~~lDV  324 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKD-GNLISTL-GQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQ--FEFHSAPALDV  324 (524)
T ss_pred             EEeecCcEEEEEecC-chhhhhh-hccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEe--eeeccCCccce
Confidence            999999999999965 5665666 78999999999999  999999999999999999988877665  66688887888


Q ss_pred             EEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      .|-.+.  -|++++.|+.|+++.+....++..+..          |.++|.++.|+|. +.+|++++.|++++||.....
T Consensus       325 dW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~G----------H~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~  391 (524)
T KOG0273|consen  325 DWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIG----------HHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQS  391 (524)
T ss_pred             EEecCc--eEeecCCCceEEEEEecCCCcceeeec----------ccCceEEEEECCC-CceEEEecCCCeeEeeecCCC
Confidence            998765  489999999999999999888888864          5668999999998 799999999999999998765


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc---------EEEEec-CCcEEEEEccCCCCCCCCCCCCcccc
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---------LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR  306 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~  306 (458)
                      ..               .+-+..|...|..+.|+|.|.         .+++++ +..+++||+..               
T Consensus       392 ~~---------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~---------------  441 (524)
T KOG0273|consen  392 NS---------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES---------------  441 (524)
T ss_pred             cc---------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---------------
Confidence            42               234556788999999999753         556555 67899999987               


Q ss_pred             ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc
Q 012712          307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH  386 (458)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (458)
                                             +.++..|..|..+  |.+++| +|+|+|+|+|+.||.|.+|+.++++.++.+.+ .+
T Consensus       442 -----------------------gv~i~~f~kH~~p--Vysvaf-S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~  494 (524)
T KOG0273|consen  442 -----------------------GVPIHTLMKHQEP--VYSVAF-SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TG  494 (524)
T ss_pred             -----------------------CceeEeeccCCCc--eEEEEe-cCCCcEEEecCCCCeeEeccccchheeEeecC-CC
Confidence                                   5678888888886  999999 99999999999999999999999999999985 45


Q ss_pred             eeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          387 VVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      .|..++|+.+|..|..+-.|+.+.+.|+.
T Consensus       495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  495 GIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            69999999999999999999999998763

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-40  Score=247.03  Aligned_cols=284  Identities=21%  Similarity=0.303  Sum_probs=244.7

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      .+.+..|+++|+++.|+-||+|.++++.|++|++|+...+.+++++ .+|..+|..++.+.  |+..+++|+.|..+.+|
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~--Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSS--DNSKFASCGGDKAVQVW   86 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccc--cccccccCCCCceEEEE
Confidence            4567899999999999999999999999999999999999999988 89999999999998  99999999999999999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc--cceeeecccCCCCcceeecceEEEEE
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      |+.+++....  +.+|.+.|+.+.|+.+. ..+++|+.|.++++||.+....  ++.+..          ....|.++..
T Consensus        87 DV~TGkv~Rr--~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde----------a~D~V~Si~v  153 (307)
T KOG0316|consen   87 DVNTGKVDRR--FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE----------AKDGVSSIDV  153 (307)
T ss_pred             EcccCeeeee--cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh----------hcCceeEEEe
Confidence            9999998876  99999999999999988 7999999999999999987654  333321          3336888887


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712          212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD  290 (458)
Q Consensus       212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~  290 (458)
                      ..   ..|++|+.||+++.||++.+++...                 ....+|+++.|+++++....++ +..+++.|-.
T Consensus       154 ~~---heIvaGS~DGtvRtydiR~G~l~sD-----------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~  213 (307)
T KOG0316|consen  154 AE---HEIVAGSVDGTVRTYDIRKGTLSSD-----------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE  213 (307)
T ss_pred             cc---cEEEeeccCCcEEEEEeecceeehh-----------------hcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence            63   5899999999999999999874321                 2245899999999999877777 6689999988


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      +                                      ++.++.+++|.+...-...++ ......+++|++||.|++|
T Consensus       214 t--------------------------------------GklL~sYkGhkn~eykldc~l-~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  214 T--------------------------------------GKLLKSYKGHKNMEYKLDCCL-NQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             h--------------------------------------hHHHHHhcccccceeeeeeee-cccceeEEeccCCceEEEE
Confidence            8                                      567788899998877677777 8888899999999999999


Q ss_pred             EecCCeEEEEeecCCce-eeEEEecCCCCeEEEeecCCcEEEec
Q 012712          371 KKKGGELIRVIEADRHV-VNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       371 d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      |+.+...+..+..+... |.+++++|.-..|+++. ++.+..|.
T Consensus       255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~  297 (307)
T KOG0316|consen  255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY  297 (307)
T ss_pred             EeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence            99999999999988877 89999999888777775 34555554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.7e-41  Score=293.12  Aligned_cols=278  Identities=22%  Similarity=0.318  Sum_probs=230.4

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ  134 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~  134 (458)
                      .++..-...++|..|++|+.+||.|-.|..|++|.+...+ +..+  .+...+           ..+=+.+.|-.+.+.|
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l--k~~~~l-----------~~~d~~sad~~~~~~D  437 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL--KDASDL-----------SNIDTESADVDVDMLD  437 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc--cchhhh-----------ccccccccchhhhhcc
Confidence            3444445679999999999999999999999999987543 2222  111111           1222233344455666


Q ss_pred             cccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712          135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      -.+......  +.+|.++|..+.|+|+. ++|++++.|+++++|.+.+..+.-.++.          |..+|..+.|+|.
T Consensus       438 ~~~~~~~~~--L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~G----------H~~PVwdV~F~P~  504 (707)
T KOG0263|consen  438 DDSSGTSRT--LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKG----------HLAPVWDVQFAPR  504 (707)
T ss_pred             ccCCceeEE--eecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecC----------CCcceeeEEecCC
Confidence            555444433  88999999999999999 7899999999999999999988777763          5568999999997


Q ss_pred             CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC
Q 012712          215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG  294 (458)
Q Consensus       215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~  294 (458)
                       |.+||+++.|++-++|.....+                                                         
T Consensus       505 -GyYFatas~D~tArLWs~d~~~---------------------------------------------------------  526 (707)
T KOG0263|consen  505 -GYYFATASHDQTARLWSTDHNK---------------------------------------------------------  526 (707)
T ss_pred             -ceEEEecCCCceeeeeecccCC---------------------------------------------------------
Confidence             7999999999999999876432                                                         


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                           +.+.+.+|.+.  +.|+.| +|+..|+++|+.|.++|+||+.+
T Consensus       527 -------------------------------------PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~  566 (707)
T KOG0263|consen  527 -------------------------------------PLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVST  566 (707)
T ss_pred             -------------------------------------chhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCC
Confidence                                                 34556667664  888888 99999999999999999999999


Q ss_pred             CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712          375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      |..++.+.||.++|.+++|||+|++||+|+.||.|++||+.++.++ .+.+|.+.|.++.||.||..||+|+.|++|++|
T Consensus       567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLW  646 (707)
T ss_pred             CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence            9999999999999999999999999999999999999999998765 788998899999999999999999999999999


Q ss_pred             EEec
Q 012712          454 EWLV  457 (458)
Q Consensus       454 ~~~~  457 (458)
                      |+..
T Consensus       647 D~~~  650 (707)
T KOG0263|consen  647 DLTK  650 (707)
T ss_pred             Echh
Confidence            9863

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-41  Score=264.72  Aligned_cols=291  Identities=19%  Similarity=0.304  Sum_probs=251.4

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      ..+.|+|||.+|++|+-||.|.+||..+|++.+.             .+++....|.-|..+|.|++||.|...||+|+.
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-------------LkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq  283 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-------------LKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ  283 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhh-------------hhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence            4678999999999999999999999999998754             233334456678999999999999999999999


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      ||.|++|.+.+|.++..|...|+..|+++.|+.  |+..+++++.|.++++-.+.+++.+..  +.+|...|+...|.++
T Consensus       284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKE--frGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKE--FRGHSSYVNEATFTDD  359 (508)
T ss_pred             CCcEEEEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHH--hcCccccccceEEcCC
Confidence            999999999999999999889999999999999  999999999999999999999998876  9999999999999999


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                      | +.+++++.||+|++|+..+.++...++...        ...+|+++-.-|.++..+++|...+++++.++...-    
T Consensus       360 G-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~--------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv----  426 (508)
T KOG0275|consen  360 G-HHIISASSDGTVKVWHGKTTECLSTFKPLG--------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV----  426 (508)
T ss_pred             C-CeEEEecCCccEEEecCcchhhhhhccCCC--------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE----
Confidence            9 789999999999999999999999887543        344788888889888899999999999888775321    


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                            |.+  |+...                                                
T Consensus       427 ----------------------Vrs--fsSGk------------------------------------------------  434 (508)
T KOG0275|consen  427 ----------------------VRS--FSSGK------------------------------------------------  434 (508)
T ss_pred             ----------------------Eee--eccCC------------------------------------------------
Confidence                                  111  11100                                                


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA  401 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  401 (458)
                                       .++. ...+.+. +|.|.++++.++|+.++.|...+|++.+++.-|...+..++-+|..+.||
T Consensus       435 -----------------REgG-dFi~~~l-SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllA  495 (508)
T KOG0275|consen  435 -----------------REGG-DFINAIL-SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLA  495 (508)
T ss_pred             -----------------ccCC-ceEEEEe-cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhh
Confidence                             0011 1334444 99999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCcEEEec
Q 012712          402 SSGIESDIKILT  413 (458)
Q Consensus       402 s~~~d~~i~iw~  413 (458)
                      +-++||.+++|.
T Consensus       496 sYsEDgllKLWk  507 (508)
T KOG0275|consen  496 SYSEDGLLKLWK  507 (508)
T ss_pred             hhcccchhhhcC
Confidence            999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.3e-41  Score=263.91  Aligned_cols=274  Identities=21%  Similarity=0.346  Sum_probs=230.7

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      .....|.|+.+.  ...+++|..|.+|+|||..+..++..+ .+|++.|.|+.|    +.+.|++|+.|.+|++||++++
T Consensus       195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqy----d~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQY----DERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeec----cceEEEecCCCceEEEEeccCC
Confidence            345789999984  557999999999999999888887666 899999999999    6679999999999999999999


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      +++.+  +..|...|..+.|+.   .++++++.|.++.+||+.....+......     .+  |...|+.+.|+.   ++
T Consensus       268 e~l~t--lihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVL-----vG--HrAaVNvVdfd~---ky  332 (499)
T KOG0281|consen  268 EPLNT--LIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVL-----VG--HRAAVNVVDFDD---KY  332 (499)
T ss_pred             chhhH--HhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHH-----hh--hhhheeeecccc---ce
Confidence            99877  788999999999986   47899999999999999887644332221     12  445788888874   59


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~  298 (458)
                      +++++.|.+|++|++.+.+                                                             
T Consensus       333 IVsASgDRTikvW~~st~e-------------------------------------------------------------  351 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCE-------------------------------------------------------------  351 (499)
T ss_pred             EEEecCCceEEEEecccee-------------------------------------------------------------
Confidence            9999999999999987754                                                             


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  378 (458)
                                                       .++++.+|...  |.|+.+   .|+++++|+.|.+|++||++.|.++
T Consensus       352 ---------------------------------fvRtl~gHkRG--IAClQY---r~rlvVSGSSDntIRlwdi~~G~cL  393 (499)
T KOG0281|consen  352 ---------------------------------FVRTLNGHKRG--IACLQY---RDRLVVSGSSDNTIRLWDIECGACL  393 (499)
T ss_pred             ---------------------------------eehhhhccccc--ceehhc---cCeEEEecCCCceEEEEeccccHHH
Confidence                                             23445566654  666655   7899999999999999999999999


Q ss_pred             EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc----------cccccccccEEEEEEecCCcEEEeeecCC
Q 012712          379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR----------ATLPTNIEQVCFSIYSADYWWSKSQNFSC  448 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~----------~~~~~~~~~v~~~~~s~d~~~l~s~~~d~  448 (458)
                      +.+++|..-|.++.|  |.+.+++|+.||+|++||+..+..          ..+..|.++|..+.|  |...+++++.|.
T Consensus       394 RvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd  469 (499)
T KOG0281|consen  394 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD  469 (499)
T ss_pred             HHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence            999999999999999  678899999999999999986632          256778889999888  467788999999


Q ss_pred             ceEEEEEec
Q 012712          449 SILLFEWLV  457 (458)
Q Consensus       449 ~i~~w~~~~  457 (458)
                      +|.||||+.
T Consensus       470 tILiWdFl~  478 (499)
T KOG0281|consen  470 TILIWDFLN  478 (499)
T ss_pred             eEEEEEcCC
Confidence            999999975

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.5e-39  Score=287.06  Aligned_cols=296  Identities=23%  Similarity=0.401  Sum_probs=250.2

Q ss_pred             eeeeEeecC-CCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           52 GIYAKLDKH-RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        52 ~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      .+...+.+| ...|.++.|+++|+.|++++.++.+++|+....+  ....+ .+|...|.+++|+|  +++++++++.|+
T Consensus       149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~--d~~~l~s~s~D~  225 (456)
T KOG0266|consen  149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSP--DGSYLLSGSDDK  225 (456)
T ss_pred             eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECC--CCcEEEEecCCc
Confidence            445666665 7899999999999999999999999999997766  44444 78999999999999  999999999999


Q ss_pred             cEEEeecccc-cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          129 QVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       129 ~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      +|++||+... ..+.  .+.+|...|++++|+|++ +++++|+.|++|++||++++++...+..          +...|.
T Consensus       226 tiriwd~~~~~~~~~--~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~----------hs~~is  292 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLK--TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKG----------HSDGIS  292 (456)
T ss_pred             eEEEeeccCCCeEEE--EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeec----------cCCceE
Confidence            9999999444 4444  488999999999999999 8999999999999999999998888875          555899


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc-ceeEEEeCCCCcEEEEecCC-cEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIY  285 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~-~i~  285 (458)
                      +++|+++ +++|++++.|+.|++||+.++...            +...+...... +++++.|+|++++++++..+ .++
T Consensus       293 ~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~  359 (456)
T KOG0266|consen  293 GLAFSPD-GNLLVSASYDGTIRVWDLETGSKL------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK  359 (456)
T ss_pred             EEEECCC-CCEEEEcCCCccEEEEECCCCcee------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence            9999998 789999999999999999998731            00111111122 69999999999999999976 899


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce-eeeeEEEEecCCCcEEEEecCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      +||+..+                                      .....+.+|... ..+.+... ++.++++++|+.|
T Consensus       360 ~w~l~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d  400 (456)
T KOG0266|consen  360 LWDLRSG--------------------------------------KSVGTYTGHSNLVRCIFSPTL-STGGKLIYSGSED  400 (456)
T ss_pred             EEEccCC--------------------------------------cceeeecccCCcceeEecccc-cCCCCeEEEEeCC
Confidence            9999873                                      455666666664 23455555 8899999999999


Q ss_pred             CeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEee--cCCcEEEecCC
Q 012712          365 GRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSG--IESDIKILTPN  415 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~d~~i~iw~~~  415 (458)
                      +.|++|++.++..+..+.+| ...+..+.++|..+++++++  .|+.+++|...
T Consensus       401 ~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  401 GSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999999999999 88999999999999999998  78999999764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.3e-38  Score=272.97  Aligned_cols=286  Identities=25%  Similarity=0.417  Sum_probs=242.1

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ  134 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~  134 (458)
                      +++++|.++|.+++|+|++++|++++.|+.|++|++.+++....+ ..|...+..+.|+|  +++.+++++.+|.|++|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA--DGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECC--CCCEEEEEcCCCeEEEEE
Confidence            457799999999999999999999999999999999988766665 68889999999999  889999999999999999


Q ss_pred             cccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712          135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      +.+++....  +..|...+.++.|+|++ .++++++.++.|.+||+++++....+..          +...+.+++|+|+
T Consensus        80 ~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~  146 (289)
T cd00200          80 LETGECVRT--LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVNSVAFSPD  146 (289)
T ss_pred             cCcccceEE--EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEEEEEEcCc
Confidence            987665544  66788899999999997 6788888899999999997766555542          3446999999997


Q ss_pred             CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712          215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL  293 (458)
Q Consensus       215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~  293 (458)
                       +.++++++.++.|++||+++.+..               .....+...+.++.|+|+++.+++++ ++.+++||+..+ 
T Consensus       147 -~~~l~~~~~~~~i~i~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-  209 (289)
T cd00200         147 -GTFVASSSQDGTIKLWDLRTGKCV---------------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-  209 (289)
T ss_pred             -CCEEEEEcCCCcEEEEEccccccc---------------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-
Confidence             678888888999999999866532               22334567899999999998777776 668999999763 


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                                                           .....+..|..  .+.++.| +|++.++++++.||.|++|++.
T Consensus       210 -------------------------------------~~~~~~~~~~~--~i~~~~~-~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         210 -------------------------------------KCLGTLRGHEN--GVNSVAF-SPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             -------------------------------------ceecchhhcCC--ceEEEEE-cCCCcEEEEEcCCCcEEEEEcC
Confidence                                                 23334445554  3888998 9999999998889999999999


Q ss_pred             CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      +++.+..+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus       250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999999999999999999999999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.4e-39  Score=247.82  Aligned_cols=284  Identities=17%  Similarity=0.228  Sum_probs=241.8

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD  179 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  179 (458)
                      +.+|++.|+.+.|+|  +|..||+++.|..|.+|++..... ....+++|.+.|..+.|.+++ +.+++++.|.+++.||
T Consensus        43 l~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gdce-N~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGDCE-NFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWD  118 (338)
T ss_pred             cCCCcceEEEEEECC--CCCeEeecCCcceEEEEecccccc-ceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEe
Confidence            479999999999999  999999999999999999754333 223478999999999999999 7899999999999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD  259 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (458)
                      +++++....++.          +..-++++.-+..+..++.+++.|+++++||+|+....+.                ..
T Consensus       119 ~~tG~~~rk~k~----------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t----------------~~  172 (338)
T KOG0265|consen  119 AETGKRIRKHKG----------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT----------------FE  172 (338)
T ss_pred             cccceeeehhcc----------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc----------------cc
Confidence            999998877764          4445777775555678899999999999999998763322                11


Q ss_pred             cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                      ...+++++.|..++..+.+|. ++.|++||++.                                      ......+.|
T Consensus       173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~--------------------------------------~d~~~~lsG  214 (338)
T KOG0265|consen  173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK--------------------------------------NDGLYTLSG  214 (338)
T ss_pred             cceeEEEEEecccccceeeccccCceeeecccc--------------------------------------CcceEEeec
Confidence            256799999999998888888 77899999976                                      456788999


Q ss_pred             ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC----CeEEEEeecCCc----eeeEEEecCCCCeEEEeecCCcEE
Q 012712          339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG----GELIRVIEADRH----VVNCIEPHPHSTVLASSGIESDIK  410 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~d~~i~  410 (458)
                      |...  |+.+.. +|+|.++.+-+.|.++++||+..    ..++..+.+|..    ....++|+|++..+.+|+.|..++
T Consensus       215 h~Dt--It~lsl-s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy  291 (338)
T KOG0265|consen  215 HADT--ITGLSL-SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY  291 (338)
T ss_pred             ccCc--eeeEEe-ccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence            9985  899998 99999999999999999999864    345777877653    356789999999999999999999


Q ss_pred             EecCCcc-cccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          411 ILTPNAA-DRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       411 iw~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +||.... -+..+++|.+.|..++|+|....|.+++.|.+|++=|
T Consensus       292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            9999885 4558999999999999999999999999999998743

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.7e-40  Score=272.74  Aligned_cols=285  Identities=16%  Similarity=0.199  Sum_probs=240.3

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF  178 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  178 (458)
                      ..+|+..|+++.|.|. .+.+|++++.|+.|+||++.. ++++.  .+.+|..+|.+++|+++| ..|++++.|+.|++|
T Consensus       210 ~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lr--tf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLR--TFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLW  285 (503)
T ss_pred             ccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceeh--hhhcchhhhhhhhccccC-Ceeeeeecceeeeee
Confidence            3899999999999994 788999999999999999987 44444  499999999999999999 679999999999999


Q ss_pred             eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712          179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      |+++|++...+.           ....++|+.|+|++.+.|++|+.|+.|+.||+|+++.++               ...
T Consensus       286 DtETG~~~~~f~-----------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---------------eYd  339 (503)
T KOG0282|consen  286 DTETGQVLSRFH-----------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---------------EYD  339 (503)
T ss_pred             ccccceEEEEEe-----------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---------------HHH
Confidence            999999998887           344689999999977999999999999999999998543               344


Q ss_pred             ccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712          259 DEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK  337 (458)
Q Consensus       259 ~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (458)
                      .|-+.|..+.|-++|+.+++.+++ ++++|+...+-.                                       ..+.
T Consensus       340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~---------------------------------------ik~i  380 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP---------------------------------------IKNI  380 (503)
T ss_pred             hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc---------------------------------------chhh
Confidence            577899999999999999999976 799999876321                                       1111


Q ss_pred             CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC---eEEEEeecCC--ceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVIEADR--HVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      ......+..++.. +|+++++++-+.|+.|.+|.+...   ...+.+++|.  +--..+.|||||.+|++|+.||.+.+|
T Consensus       381 ~~~~~hsmP~~~~-~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~w  459 (503)
T KOG0282|consen  381 ADPEMHTMPCLTL-HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFW  459 (503)
T ss_pred             cchhhccCcceec-CCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEe
Confidence            1112223567777 999999999999999999997543   2335677775  345678999999999999999999999


Q ss_pred             cCCccccc-ccccccccEEEEEEecCC-cEEEeeecCCceEEEE
Q 012712          413 TPNAADRA-TLPTNIEQVCFSIYSADY-WWSKSQNFSCSILLFE  454 (458)
Q Consensus       413 ~~~~~~~~-~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~  454 (458)
                      |..+.++. .+..|.+.+..+.|+|.. .-+||++.||.|++||
T Consensus       460 dwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  460 DWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             echhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            99988766 778898999999999988 8889999999999996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-38  Score=264.55  Aligned_cols=417  Identities=13%  Similarity=0.141  Sum_probs=288.0

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccc---------------cccccccccccceEEe------eeeeEeecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTR---------------NFALRRRASEDLVLRL------GIYAKLDKH   60 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~---------------~~~~~~~~~~~~~~~~------~~~~~~~~h   60 (458)
                      .++-+.|..+.++++-..|.|.|||.+|..+++.               +-.-+++|++|..+++      +.++.|..|
T Consensus        17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH   96 (794)
T KOG0276|consen   17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH   96 (794)
T ss_pred             eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence            4677899999999999999999999998877765               1123888999998876      788899999


Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      .+.|+|++.+|...+++|+|.|-+|++||.+..-...+...+|..-|.+++|.|. |.+.+|+++-|++|++|.+.++.+
T Consensus        97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~  175 (794)
T KOG0276|consen   97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHP  175 (794)
T ss_pred             ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCC
Confidence            9999999999999999999999999999998765444444899999999999995 889999999999999999987776


Q ss_pred             eeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          141 VETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      ..+  +.+|...|+++.+-+.+ +-+|++|+.|.+|++||.++..+++++..          |...|..+.|+|. -.++
T Consensus       176 nfT--l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG----------Ht~Nvs~v~fhp~-lpii  242 (794)
T KOG0276|consen  176 NFT--LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG----------HTNNVSFVFFHPE-LPII  242 (794)
T ss_pred             cee--eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc----------ccccceEEEecCC-CcEE
Confidence            655  88999999999998865 34799999999999999999999998864          4447999999997 6799


Q ss_pred             EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCC
Q 012712          220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~  299 (458)
                      ++|++||+++||+..+.++...+.               -.-.++.+++-.+.+..++.|.|....+..+........+.
T Consensus       243 isgsEDGTvriWhs~Ty~lE~tLn---------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd  307 (794)
T KOG0276|consen  243 ISGSEDGTVRIWNSKTYKLEKTLN---------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMD  307 (794)
T ss_pred             EEecCCccEEEecCcceehhhhhh---------------cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeec
Confidence            999999999999999877544332               23568999999999888999998876666665543322222


Q ss_pred             CCCcccccccccc-CCCCccccCCC-CCCcccccC-ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC--
Q 012712          300 SSPVSTRSEASEM-GSDHTSAASPS-TANTDVRIA-PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG--  374 (458)
Q Consensus       300 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--  374 (458)
                      ....-.......+ ......+.... ..+.+..+. .+.+ +... .....++. +|+|+++++++ ||.-.||..-.  
T Consensus       308 ~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeL-gs~e-iyPq~L~h-sPNGrfV~Vcg-dGEyiIyTala~R  383 (794)
T KOG0276|consen  308 SNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKEL-GSVE-IYPQTLAH-SPNGRFVVVCG-DGEYIIYTALALR  383 (794)
T ss_pred             CCccEEEEcCceeeeeeceeccCcccccCCccccchhhhc-cccc-cchHHhcc-CCCCcEEEEec-CccEEEEEeeehh
Confidence            1111111111100 00000000000 000000000 0111 1110 11234555 99999888776 77777775311  


Q ss_pred             ----CeEE--------------------E---EeecCCceeeEEEecC---CCCeEEEeecCCcEEEecCCccccccccc
Q 012712          375 ----GELI--------------------R---VIEADRHVVNCIEPHP---HSTVLASSGIESDIKILTPNAADRATLPT  424 (458)
Q Consensus       375 ----~~~~--------------------~---~~~~~~~~v~~~~~s~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~  424 (458)
                          |+.+                    .   .++.|..  ..+.++.   -|..|+....++.+++||-+++++..-..
T Consensus       384 nK~fG~~~eFvw~~dsne~avRes~~~vki~knfke~ks--i~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~  461 (794)
T KOG0276|consen  384 NKAFGSGLEFVWAADSNEFAVRESNGNVKIFKNFKEHKS--IRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIE  461 (794)
T ss_pred             hcccccceeEEEcCCCCeEEEEecCCceEEEecceeccc--cccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEe
Confidence                1100                    0   1111110  0001111   12334444456788888888877653322


Q ss_pred             ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          425 NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       425 ~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                        -....+.|+-+|.+++.++.| +.++..+.
T Consensus       462 --v~~k~v~w~d~g~lVai~~d~-Sfyil~~n  490 (794)
T KOG0276|consen  462 --VTSKHVYWSDNGELVAIAGDD-SFYILKFN  490 (794)
T ss_pred             --eccceeEEecCCCEEEEEecC-ceeEEEec
Confidence              224568899999999887766 45555543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.1e-38  Score=302.75  Aligned_cols=292  Identities=16%  Similarity=0.277  Sum_probs=231.7

Q ss_pred             eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--------eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      +..|.+.|.+++|+|+|++||+|+.|+.|+||++....        ....+  .+...+.+++|+|. ++.+|++++.||
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~~las~~~Dg  555 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSY-IKSQVASSNFEG  555 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccC-CCCEEEEEeCCC
Confidence            45699999999999999999999999999999975421        11222  34567999999873 478999999999


Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      .|++||+.+++.+..  +.+|...|++++|+|.++.+|++++.|+.|++||++++.....+.           ....+.+
T Consensus       556 ~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------~~~~v~~  622 (793)
T PLN00181        556 VVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------TKANICC  622 (793)
T ss_pred             eEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------cCCCeEE
Confidence            999999988766554  788999999999998444789999999999999999887766554           2235889


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF  287 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~  287 (458)
                      +.|++.++.+|++|+.||.|++||+++.+.              +......|...|.++.|. ++.+|++++ ++.|++|
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~--------------~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW  687 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNPKL--------------PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW  687 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence            999765589999999999999999987541              122344678899999997 566777776 5689999


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                      |+.......                                ....+..+.+|...  +..++| +|++++|++|+.|+.|
T Consensus       688 d~~~~~~~~--------------------------------~~~~l~~~~gh~~~--i~~v~~-s~~~~~lasgs~D~~v  732 (793)
T PLN00181        688 DLSMSISGI--------------------------------NETPLHSFMGHTNV--KNFVGL-SVSDGYIATGSETNEV  732 (793)
T ss_pred             eCCCCcccc--------------------------------CCcceEEEcCCCCC--eeEEEE-cCCCCEEEEEeCCCEE
Confidence            987531100                                02345677888774  778888 9999999999999999


Q ss_pred             EEEEecCCeEEEEe-------------ecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          368 FIWKKKGGELIRVI-------------EADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       368 ~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      ++|+.....++..+             ..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus       733 ~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        733 FVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            99998665443222             234567999999999999999999999999985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.4e-39  Score=255.30  Aligned_cols=285  Identities=20%  Similarity=0.319  Sum_probs=240.1

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      .++.+.|.+..++||+.|++|+|||+.+|++..                     ++.||-..|..+++|+--.||.+++.
T Consensus       155 r~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---------------------tltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---------------------TLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             EEEeeCCCceeEEecCCCceeEEEEcccCeEEE---------------------eecchhheeeeeeecccCceEEEecC
Confidence            467788999999999999999999999998773                     58999999999999999999999999


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      |+.|+.||++..+.+..+ .+|-..|+++...|  .-..|++|+.|.++++||+++...+..  +.+|..+|..+.+.|-
T Consensus       214 dk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhP--Tldvl~t~grDst~RvWDiRtr~~V~~--l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHP--TLDVLVTGGRDSTIRVWDIRTRASVHV--LSGHTNPVASVMCQPT  288 (460)
T ss_pred             CCeeEEEechhhhhHHHh-ccccceeEEEeccc--cceeEEecCCcceEEEeeecccceEEE--ecCCCCcceeEEeecC
Confidence            999999999999998888 79999999999999  899999999999999999999887766  9999999999999998


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                      ++ .+++|+.|++|++||++.++....+..          +...+.+++.+|. .+.|++++.|. |+-|++..+.... 
T Consensus       289 dp-qvit~S~D~tvrlWDl~agkt~~tlt~----------hkksvral~lhP~-e~~fASas~dn-ik~w~~p~g~f~~-  354 (460)
T KOG0285|consen  289 DP-QVITGSHDSTVRLWDLRAGKTMITLTH----------HKKSVRALCLHPK-ENLFASASPDN-IKQWKLPEGEFLQ-  354 (460)
T ss_pred             CC-ceEEecCCceEEEeeeccCceeEeeec----------ccceeeEEecCCc-hhhhhccCCcc-ceeccCCccchhh-
Confidence            85 589999999999999999988777654          4557999999998 68899988874 9999998876432 


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                    ...+|...|++++.+.||-+++.+..+.+..||.+++........                     
T Consensus       355 --------------nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t---------------------  399 (460)
T KOG0285|consen  355 --------------NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQT---------------------  399 (460)
T ss_pred             --------------ccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccc---------------------
Confidence                          255678899999999998655555566899999998754433210                     


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                              ......+....   .|.+.+| +..|..|++|..|.+|++|.-.
T Consensus       400 --------~vqpGSl~sEa---gI~as~f-Dktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  400 --------IVQPGSLESEA---GIFASCF-DKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             --------cccCCcccccc---ceeEEee-cccCceEEeccCCcceEEEecc
Confidence                    00111122222   3788888 9999999999999999999753

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4e-39  Score=280.52  Aligned_cols=257  Identities=21%  Similarity=0.286  Sum_probs=217.0

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccc----cccccccccccceEEe------eeeeEeecCCCceEEEEEecC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTR----NFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTD   72 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~s~~   72 (458)
                      .+-|++++.+||.|..|..|++|.+...++.+-    .....-..+.|....+      ...+++.||.++|..++|+|+
T Consensus       383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd  462 (707)
T KOG0263|consen  383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD  462 (707)
T ss_pred             eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence            355899999999999999999999985332211    0111111111111111      345568999999999999999


Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      .++|++++.|+++++|.+.+..++..+ .+|..+|..+.|+|  .|-++||++.|++-++|..........  +.+|.+.
T Consensus       463 ~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRi--faghlsD  537 (707)
T KOG0263|consen  463 RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRI--FAGHLSD  537 (707)
T ss_pred             ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhh--hcccccc
Confidence            999999999999999999999998887 79999999999999  999999999999999999887666554  8999999


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      |.|+.|+|+. +++++|+.|.++++||+.+|..+..|..          |..+|.+++|+|+ |.+|++|+.||.|.+||
T Consensus       538 V~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------H~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  538 VDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTG----------HKGPVTALAFSPC-GRYLASGDEDGLIKIWD  605 (707)
T ss_pred             cceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecC----------CCCceEEEEEcCC-CceEeecccCCcEEEEE
Confidence            9999999999 7899999999999999999999988864          5668999999997 89999999999999999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccC
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDM  291 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~  291 (458)
                      +.+++..               ....+|.+.|.++.|+.+|..||+++.| +|++||+..
T Consensus       606 l~~~~~v---------------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  606 LANGSLV---------------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cCCCcch---------------hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9998643               3345578999999999999999999855 899999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.8e-38  Score=237.82  Aligned_cols=282  Identities=17%  Similarity=0.289  Sum_probs=219.2

Q ss_pred             CCCCCC-CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEe-ecCCCceEEEEEecCCCEEEEecC
Q 012712            4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         4 ~~~~~~-~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      ++++|. |..||+|+.|..||||+...+.                  .+.+...+ .+|+..|++++|+|.|++||+||.
T Consensus        20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen   20 VAWHPGKGVILASCGTDKAVRIWSTSSGD------------------SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             EEeccCCceEEEeecCCceEEEEecCCCC------------------cEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            456677 8899999999999999998432                  12333444 479999999999999999999999


Q ss_pred             CCeEEEEECCCc--ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-eeeeccccccceEEEEE
Q 012712           82 DRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        82 d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~  158 (458)
                      |.++.||.-..+  +++..+ .+|...|.+++|++  +|++||+++.|..|-+|.+..+... ....++.|+..|..+.|
T Consensus        82 D~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATL-EGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             cceEEEeecCCCceeEEeee-eccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence            999999986654  444444 89999999999999  9999999999999999999865543 23458899999999999


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCC---CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTG---AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      +|.. .+|++++.|.+|++|.-..+   .+.+.+..          +...|.+++|+|. +..+++++.|++++||...+
T Consensus       159 HPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g----------~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~  226 (312)
T KOG0645|consen  159 HPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG----------HENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYT  226 (312)
T ss_pred             cCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC----------ccceEEEEEecCC-CceEEEecCCcceEeeeecc
Confidence            9988 79999999999999987632   23444432          3447999999997 68999999999999998763


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      .                   +...|...+..++|. +| .|++++ ++.|++|..........+                
T Consensus       227 ~-------------------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~----------------  269 (312)
T KOG0645|consen  227 D-------------------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSW----------------  269 (312)
T ss_pred             C-------------------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchH----------------
Confidence            2                   233356789999998 44 677766 668999986532111110                


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEec
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~  373 (458)
                                     ......-..|..  .|++++| .|. .++|++|+.||.|++|.+.
T Consensus       270 ---------------~l~~~~~~aHe~--dVNsV~w-~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  270 ---------------NLLAKKEGAHEV--DVNSVQW-NPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ---------------HHHHhhhccccc--ccceEEE-cCCCCCceeecCCCceEEEEEec
Confidence                           111223334555  5999999 994 6799999999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-39  Score=242.88  Aligned_cols=290  Identities=20%  Similarity=0.273  Sum_probs=247.1

Q ss_pred             eEeecCCCceEEEEEec---CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           55 AKLDKHRGCVNTVSFNT---DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      .+..||+.+|..++|||   +|-+|++++.|+.-.+-+-++|.-+-+| .+|.+.|++.....  +...-++++.|-+-+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~--na~~aasaaadftak   84 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNK--NATRAASAAADFTAK   84 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCc--hhhhhhhhcccchhh
Confidence            35679999999999986   8999999999999988888999999998 79999999999987  777888999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccc-eeeecccCCCCcceeecceEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      +||.-++..+..  + .|..-|.+++|+.|. +.|++|+.+..+++||++..+... .+.        +  +.+.|..+.
T Consensus        85 vw~a~tgdelhs--f-~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~--------g--htg~Ir~v~  150 (334)
T KOG0278|consen   85 VWDAVTGDELHS--F-EHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEIS--------G--HTGGIRTVL  150 (334)
T ss_pred             hhhhhhhhhhhh--h-hhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhc--------C--CCCcceeEE
Confidence            999999988764  3 488899999999998 689999999999999998775432 222        2  556789999


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEcc
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD  290 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~  290 (458)
                      |... .+.|++.+.|++||+||.+++...+.+.+                +.+|+++.++++|++|..+....|..||..
T Consensus       151 wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------~s~VtSlEvs~dG~ilTia~gssV~Fwdak  213 (334)
T KOG0278|consen  151 WCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAK  213 (334)
T ss_pred             Eecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------CCCCcceeeccCCCEEEEecCceeEEeccc
Confidence            9876 57888889999999999999986554333                457899999999999999989999999988


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      +                                      ...++.+.-..   .|.+... +|+...+++|++|..++.|
T Consensus       214 s--------------------------------------f~~lKs~k~P~---nV~SASL-~P~k~~fVaGged~~~~kf  251 (334)
T KOG0278|consen  214 S--------------------------------------FGLLKSYKMPC---NVESASL-HPKKEFFVAGGEDFKVYKF  251 (334)
T ss_pred             c--------------------------------------ccceeeccCcc---ccccccc-cCCCceEEecCcceEEEEE
Confidence            7                                      23333333332   3777777 9999999999999999999


Q ss_pred             EecCCeEEEEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          371 KKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       371 d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      |..+++.+..+ ++|.++|.++.|+|||...|+|++||+|+||....++..
T Consensus       252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99999999886 899999999999999999999999999999998765443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-38  Score=264.99  Aligned_cols=287  Identities=22%  Similarity=0.338  Sum_probs=251.3

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      +..+++..|+..|.++.|+|...+++++-.+|.|.||+.++...+..+ .-...+|.+..|-+  ..+++++|+.|..|+
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfia--RknWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIA--RKNWIVTGSDDMQIR   80 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeee--ccceEEEecCCceEE
Confidence            344567779999999999999999999999999999999999998888 56678999999999  899999999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      +|+..+.+.+..  +..|.+.|++++.+|..| ++++++.|-.|++||.+.. .+.+.+.        +|.|  .|.+++
T Consensus        81 Vfnynt~ekV~~--FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe--------GH~H--yVMqv~  147 (794)
T KOG0276|consen   81 VFNYNTGEKVKT--FEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE--------GHEH--YVMQVA  147 (794)
T ss_pred             EEecccceeeEE--eeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc--------Ccce--EEEEEE
Confidence            999999988876  899999999999999996 6899999999999998765 3444443        4334  799999


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCC-cEEEE
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDE-FIYLF  287 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~-~i~i~  287 (458)
                      |+|.+.+.|++++-|++|++|.+.+..               +.....+|...|+++.|-+.|  .+|++|+|| .+++|
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslgs~~---------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW  212 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLGSPH---------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW  212 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcCCCC---------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence            999999999999999999999998754               234556899999999999866  599999988 79999


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                      |.++                                      ..+++++.||.+.  |..+.| +|.-.++++|++||++
T Consensus       213 DyQt--------------------------------------k~CV~TLeGHt~N--vs~v~f-hp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  213 DYQT--------------------------------------KSCVQTLEGHTNN--VSFVFF-HPELPIIISGSEDGTV  251 (794)
T ss_pred             ecch--------------------------------------HHHHHHhhccccc--ceEEEe-cCCCcEEEEecCCccE
Confidence            9988                                      6789999999986  788887 9999999999999999


Q ss_pred             EEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712          368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK  410 (458)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  410 (458)
                      +||+..+.++..++.-.-+.+++++-.+.++.++.|.++|.|.
T Consensus       252 riWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  252 RIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             EEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            9999999988888877778899999988888888888777653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=6.4e-37  Score=267.89  Aligned_cols=387  Identities=15%  Similarity=0.192  Sum_probs=302.6

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccc-----------cc----cccccccceEEe------eeeeEeecCCCceEEEEE
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNF-----------AL----RRRASEDLVLRL------GIYAKLDKHRGCVNTVSF   69 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~-----------~~----~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~   69 (458)
                      ..++.|+.+|.++|||+.+++++.+..           +|    .+.|..++.+-+      +.+.+|+.-.+.|++++|
T Consensus       173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF  252 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF  252 (910)
T ss_pred             eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence            347889999999999999999987611           11    566777776554      667777744699999999


Q ss_pred             ecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeec
Q 012712           70 NTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLL  146 (458)
Q Consensus        70 s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~  146 (458)
                      ..||+ .+|+|+..|.+.+||++..+........|.+.|....|.|  ....+++++.|..+++|=..++..  ...+.-
T Consensus       253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~--~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R  330 (910)
T KOG1539|consen  253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP--GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR  330 (910)
T ss_pred             ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC--CCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence            99995 6677778899999999998888888778999999999999  999999999999999987665543  222335


Q ss_pred             cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccce---------------e-----eecccC-----------
Q 012712          147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL---------------F-----TCRPID-----------  195 (458)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~-----~~~~~~-----------  195 (458)
                      .+|..+..++.|.-...+.+.+++.|++++.+++......+.               .     ..++..           
T Consensus       331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~  410 (910)
T KOG1539|consen  331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE  410 (910)
T ss_pred             cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence            689999999999854448899999999888886532110000               0     000000           


Q ss_pred             ----------------------CCCcc--------eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712          196 ----------------------DRRNY--------MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG  245 (458)
Q Consensus       196 ----------------------~~~~~--------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  245 (458)
                                            ....|        .....+.+++.++. |++.+.|+..|.|-+|++.++-..+.+   
T Consensus       411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf---  486 (910)
T KOG1539|consen  411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSF---  486 (910)
T ss_pred             hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeeccc---
Confidence                                  00000        02356788999997 799999999999999999988643331   


Q ss_pred             CCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                               .-...|.++|++++...-++.+++++ +|-++.||.....                               
T Consensus       487 ---------~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-------------------------------  526 (910)
T KOG1539|consen  487 ---------GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-------------------------------  526 (910)
T ss_pred             ---------ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-------------------------------
Confidence                     11245789999999999888888877 6789999998742                               


Q ss_pred             CCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee
Q 012712          325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG  404 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  404 (458)
                             ....+.-..   .+..+.+ +.....++.+..|-.|+++|..+.+.++.+.+|.+.|++++|||||++|++++
T Consensus       527 -------l~~~l~l~~---~~~~iv~-hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas  595 (910)
T KOG1539|consen  527 -------LKKSLRLGS---SITGIVY-HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS  595 (910)
T ss_pred             -------eeeeeccCC---Ccceeee-eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence                   222222211   2556665 66777889999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecC-CceEEEE
Q 012712          405 IESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFS-CSILLFE  454 (458)
Q Consensus       405 ~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-~~i~~w~  454 (458)
                      .|++|++||+.++.+.....-..+.+++.|||+|.+|||...| .-|++|-
T Consensus       596 mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  596 MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            9999999999999998877788889999999999999999999 5599985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7e-37  Score=263.75  Aligned_cols=282  Identities=21%  Similarity=0.326  Sum_probs=240.4

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      .+|..+|.+++|+|  ++++|++++.+|.+++|++.+++....  +..|...+..+.|+|++ ..+++++.+|.|++||+
T Consensus         6 ~~h~~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           6 KGHTGGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRT--LKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDL   80 (289)
T ss_pred             cccCCCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEE--EecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEc
Confidence            58999999999999  999999999999999999987765444  67788899999999998 68899999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      +.++....+..          +...+.++.|+|+ +.++++++.++.+.+||+++.+..               .....|
T Consensus        81 ~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~  134 (289)
T cd00200          81 ETGECVRTLTG----------HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL---------------TTLRGH  134 (289)
T ss_pred             CcccceEEEec----------cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE---------------EEeccC
Confidence            98766555542          3346899999997 678888888999999999865432               222346


Q ss_pred             ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...+.+++|+|++.++++++ ++.+++||+...                                      .....+..|
T Consensus       135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------------------------------------~~~~~~~~~  176 (289)
T cd00200         135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--------------------------------------KCVATLTGH  176 (289)
T ss_pred             CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc--------------------------------------ccceeEecC
Confidence            67899999999999999998 779999999753                                      334455556


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      ..  .+.++.| +|+++.+++++.++.|++||+.+++.+..+..|...+.+++|+|++.++++++.|+.|++|++..++.
T Consensus       177 ~~--~i~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~  253 (289)
T cd00200         177 TG--EVNSVAF-SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC  253 (289)
T ss_pred             cc--ccceEEE-CCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence            54  3889998 99999999999999999999999999999988999999999999998999888899999999987654


Q ss_pred             c-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          420 A-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       420 ~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      . .+..|...+.+++|+|++.+|++++.|+.|++|+
T Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            4 5567778899999999999999999999999996

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=235.73  Aligned_cols=276  Identities=17%  Similarity=0.188  Sum_probs=240.0

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      .+|...+.+++|..  +|..|++++.|+++++|++...+........+|.+.|-.++|+|..+.+|++++.|.+|++||+
T Consensus        17 ~~~~~~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             hhhhhcceEEEEcc--cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            67899999999999  9999999999999999999887666555678899999999999999899999999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      +.+++......           ...-.-+.|+|+ +.++++++.|..|.+.|.++.+.....+                .
T Consensus        95 r~~k~~~~i~~-----------~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~----------------~  146 (313)
T KOG1407|consen   95 RSGKCTARIET-----------KGENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQ----------------F  146 (313)
T ss_pred             ccCcEEEEeec-----------cCcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhc----------------c
Confidence            99998877653           223456889998 6899999999999999999987543322                2


Q ss_pred             ccceeEEEeCCCCcEE-EEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELL-VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...+..++|+-++.++ ++.+.|.|.|.....                                      .+++..++.|
T Consensus       147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--------------------------------------Lkpv~si~AH  188 (313)
T KOG1407|consen  147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--------------------------------------LKPVQSIKAH  188 (313)
T ss_pred             cceeeeeeecCCCCEEEEecCCceEEEEeccc--------------------------------------cccccccccC
Confidence            3457778888666554 455568888887765                                      5677888899


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      ...  ..++.| +|+|+|+|+|+.|..+.+||++..-+++.+.-+.-+|..+.||.||++||+|++|..|-|=++++|..
T Consensus       189 ~sn--CicI~f-~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  189 PSN--CICIEF-DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             Ccc--eEEEEE-CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence            874  889998 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccEEEEEEecCCcEEEeeecC
Q 012712          420 ATLPTNIEQVCFSIYSADYWWSKSQNFS  447 (458)
Q Consensus       420 ~~~~~~~~~v~~~~~s~d~~~l~s~~~d  447 (458)
                      ..-..+.++...++|+|...+||.+..|
T Consensus       266 ~~eI~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  266 VWEIPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             EEEeeccCCceeEEecCCCceeeEEecC
Confidence            8888889999999999999999987765

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-37  Score=272.34  Aligned_cols=305  Identities=16%  Similarity=0.256  Sum_probs=261.3

Q ss_pred             EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      .|...+..|..++|+|...+++++-..|.|++||.+-+.++..| ..|.++|..++|+|  .+.++++|+.|-.|++|+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~--~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHP--TQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecC--CCCeEEecCCccEEEEEec
Confidence            35566788999999999999999999999999999999999998 79999999999999  9999999999999999999


Q ss_pred             ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      .+.+++.+  +.+|.+.|..+.|++.-+ .+++++.|.+|+||+..+++++..+..          |...|.|..|+|. 
T Consensus        81 k~rrclft--L~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltG----------HnHYVMcAqFhpt-  146 (1202)
T KOG0292|consen   81 KTRRCLFT--LLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTG----------HNHYVMCAQFHPT-  146 (1202)
T ss_pred             ccceehhh--hccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEec----------CceEEEeeccCCc-
Confidence            99888876  899999999999999985 789999999999999999999988874          4447999999997 


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCC--C------------CCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFG--Q------------PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND  281 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (458)
                      ..++++++-|.+|++||+...+.......+  .            +......+.+..+|...|+-++|+|.-.+|++|+|
T Consensus       147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D  226 (1202)
T KOG0292|consen  147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD  226 (1202)
T ss_pred             cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence            689999999999999999765433221110  0            00011234567789999999999999999999998


Q ss_pred             C-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712          282 E-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS  360 (458)
Q Consensus       282 ~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~  360 (458)
                      | .|++|.++..+                                    .....+..+|.+.  |.++.| +|...++++
T Consensus       227 DRqVKlWrmnetK------------------------------------aWEvDtcrgH~nn--Vssvlf-hp~q~lIlS  267 (1202)
T KOG0292|consen  227 DRQVKLWRMNETK------------------------------------AWEVDTCRGHYNN--VSSVLF-HPHQDLILS  267 (1202)
T ss_pred             cceeeEEEecccc------------------------------------ceeehhhhcccCC--cceEEe-cCccceeEe
Confidence            8 69999987632                                    3456678899986  889998 999999999


Q ss_pred             ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      .++|++|++||+...+.+++++...+.-+.++-+|..+++|+| .|+-+.+|.++..
T Consensus       268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE  323 (1202)
T KOG0292|consen  268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE  323 (1202)
T ss_pred             cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence            9999999999999999999998777889999999999988765 5777788887744

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1e-36  Score=293.72  Aligned_cols=305  Identities=13%  Similarity=0.123  Sum_probs=238.9

Q ss_pred             CCeEEEEECCCcceeeeec----cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc----c--eeeeecccccc
Q 012712           82 DRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG----G--VETKLLGKHQG  151 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~----~--~~~~~~~~~~~  151 (458)
                      +|.+++|+.........+.    ..|.+.|.+++|+|  ++++|++|+.|+.|++|+.....    .  .....+. +..
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~  533 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRS  533 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccC
Confidence            6778888887655433321    34899999999999  99999999999999999975421    1  0111122 346


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      .+.+++|+|....+|++++.||.|++||+.+++....+..          +...|.+++|+|.++.+|++|+.|+.|++|
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~----------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW  603 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE----------HEKRVWSIDYSSADPTLLASGSDDGSVKLW  603 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC----------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence            7899999986557899999999999999998876655542          455799999998557899999999999999


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC-CCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccc
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      |+++......               .. +...+.++.|+ +++.+|++++ ++.|++||+....                
T Consensus       604 d~~~~~~~~~---------------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----------------  651 (793)
T PLN00181        604 SINQGVSIGT---------------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----------------  651 (793)
T ss_pred             ECCCCcEEEE---------------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----------------
Confidence            9987653211               11 23568899995 5789999988 5589999987631                


Q ss_pred             cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC------CeEEEEeec
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------GELIRVIEA  383 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~  383 (458)
                                           .....+.+|...  |.++.| . ++.+|++++.|++|++||+..      .+++..+.+
T Consensus       652 ---------------------~~~~~~~~h~~~--V~~v~f-~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g  706 (793)
T PLN00181        652 ---------------------LPLCTMIGHSKT--VSYVRF-V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG  706 (793)
T ss_pred             ---------------------ccceEecCCCCC--EEEEEE-e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC
Confidence                                 134456677764  888988 5 678999999999999999974      357788999


Q ss_pred             CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc--------------ccccccccEEEEEEecCCcEEEeeecCCc
Q 012712          384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA--------------TLPTNIEQVCFSIYSADYWWSKSQNFSCS  449 (458)
Q Consensus       384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~--------------~~~~~~~~v~~~~~s~d~~~l~s~~~d~~  449 (458)
                      |...+..++|+|++++||+|+.|+.|++|+.......              ....+...|.+++|+|++..|++|+.||.
T Consensus       707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            9999999999999999999999999999997644211              11234456999999999999999999999


Q ss_pred             eEEEEEe
Q 012712          450 ILLFEWL  456 (458)
Q Consensus       450 i~~w~~~  456 (458)
                      |+|||..
T Consensus       787 I~i~~~~  793 (793)
T PLN00181        787 IKILEMV  793 (793)
T ss_pred             EEEEecC
Confidence            9999963

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.2e-39  Score=253.48  Aligned_cols=266  Identities=18%  Similarity=0.293  Sum_probs=222.7

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      ...+++|..|.+|+|||.++-+++.                     .+.||++.|.|+.|.  .+.+++|+.|.+|+|||
T Consensus       207 D~kiVSGlrDnTikiWD~n~~~c~~---------------------~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWD  263 (499)
T KOG0281|consen  207 DEKIVSGLRDNTIKIWDKNSLECLK---------------------ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWD  263 (499)
T ss_pred             chhhhcccccCceEEeccccHHHHH---------------------hhhcCCCcEEeeecc--ceEEEecCCCceEEEEe
Confidence            3458999999999999999766664                     489999999999995  56999999999999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-eeeeccccccceEEEEEcCCCCeEEEE
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYT  168 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s  168 (458)
                      +++++++..+ ..|.+.|..+.|+    ..++++++.|.++.+||+.....+ ....+.+|...|+.+.|+.   +++++
T Consensus       264 v~tge~l~tl-ihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVs  335 (499)
T KOG0281|consen  264 VNTGEPLNTL-IHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVS  335 (499)
T ss_pred             ccCCchhhHH-hhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEE
Confidence            9999998887 6899999999995    469999999999999999876543 2244789999999999976   58999


Q ss_pred             ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712          169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      ++.|.+|++|++.+.+.+..+..          |...|.|+.+.   ++++++|+.|.+|++||+..+.           
T Consensus       336 ASgDRTikvW~~st~efvRtl~g----------HkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~-----------  391 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEFVRTLNG----------HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA-----------  391 (499)
T ss_pred             ecCCceEEEEeccceeeehhhhc----------ccccceehhcc---CeEEEecCCCceEEEEeccccH-----------
Confidence            99999999999999999888764          33356777664   5799999999999999987653           


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD  328 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (458)
                                                                                                      
T Consensus       392 --------------------------------------------------------------------------------  391 (499)
T KOG0281|consen  392 --------------------------------------------------------------------------------  391 (499)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe---------EEEEeecCCceeeEEEecCCCCe
Q 012712          329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE---------LIRVIEADRHVVNCIEPHPHSTV  399 (458)
Q Consensus       329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~  399 (458)
                         +++.+.||+.-  |.++.|   |.+.+++|+.||+|++||+..+.         ++.++..|++.|..+.|  |...
T Consensus       392 ---cLRvLeGHEeL--vRciRF---d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fq  461 (499)
T KOG0281|consen  392 ---CLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQ  461 (499)
T ss_pred             ---HHHHHhchHHh--hhheee---cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceE
Confidence               34556677764  778877   67889999999999999987653         33455679999999999  6678


Q ss_pred             EEEeecCCcEEEecCCccccc
Q 012712          400 LASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       400 l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +++++.|.+|.|||..++...
T Consensus       462 IvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  462 IISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             EEeccCCCeEEEEEcCCCCcc
Confidence            999999999999999876443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-36  Score=234.02  Aligned_cols=298  Identities=23%  Similarity=0.419  Sum_probs=240.0

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC--CC
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DG  128 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--dg  128 (458)
                      ++..+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++..+..+ ..+.-.+..++|..  ....++.++.  |.
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth--~~~~~i~sStk~d~   80 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTH--HSNTVIHSSTKEDD   80 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEec--CCceEEEccCCCCC
Confidence            3445567767889999999999999999999999999999999998888 56677889999987  6666666665  88


Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      +|+..++.+++.+..  +.+|...|.+++.+|-+ ..+++++.|++|++||++..++...+...            .-..
T Consensus        81 tIryLsl~dNkylRY--F~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~~pi  145 (311)
T KOG1446|consen   81 TIRYLSLHDNKYLRY--FPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------GRPI  145 (311)
T ss_pred             ceEEEEeecCceEEE--cCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC------------CCcc
Confidence            999999999888765  99999999999999998 78999999999999999988877666432            3356


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLF  287 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~  287 (458)
                      ++|+|+ |-++|++.....|++||+|.....       |...+.   +........+.+.|+|||++|+.+++. .+++.
T Consensus       146 ~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkg-------PF~tf~---i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l  214 (311)
T KOG1446|consen  146 AAFDPE-GLIFALANGSELIKLYDLRSFDKG-------PFTTFS---ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL  214 (311)
T ss_pred             eeECCC-CcEEEEecCCCeEEEEEecccCCC-------CceeEc---cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence            899998 788998888889999999987532       222222   122446788999999999988877754 69999


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                      |.-.+.                                      ....+.++.+...+..-+.|+||++++++|+.||+|
T Consensus       215 DAf~G~--------------------------------------~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  215 DAFDGT--------------------------------------VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI  256 (311)
T ss_pred             EccCCc--------------------------------------EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence            987743                                      444555554433233333349999999999999999


Q ss_pred             EEEEecCCeEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          368 FIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       368 ~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      .+|+++++..+..+++ +.+++.++.|+|...++++++  ..+.+|-+...
T Consensus       257 ~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~  305 (311)
T KOG1446|consen  257 HVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED  305 (311)
T ss_pred             EEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence            9999999999999988 788999999999888887765  57888876544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=271.74  Aligned_cols=290  Identities=19%  Similarity=0.273  Sum_probs=243.4

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC-
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL-  180 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-  180 (458)
                      .+...|.++.|+|  +|+.+++++.++.+++|+....+......+.+|...|..++|+|++ .++++++.|++|++||+ 
T Consensus       157 ~~~~sv~~~~fs~--~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  157 HECPSVTCVDFSP--DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cccCceEEEEEcC--CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-cEEEEecCCceEEEeecc
Confidence            3478899999999  9999999999999999999666521223368899999999999999 68999999999999999 


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      ..+..++.+..          |...|++++|+|+ ++++++|+.|++|++||+++++.               ......|
T Consensus       234 ~~~~~~~~l~g----------H~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~---------------~~~l~~h  287 (456)
T KOG0266|consen  234 DDGRNLKTLKG----------HSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGEC---------------VRKLKGH  287 (456)
T ss_pred             CCCeEEEEecC----------CCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeE---------------EEeeecc
Confidence            44466666654          5568999999998 49999999999999999999653               3456668


Q ss_pred             ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...|++++|++++.+|++++ ++.+++||+.++...                                    +...+.++
T Consensus       288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~------------------------------------~~~~~~~~  331 (456)
T KOG0266|consen  288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL------------------------------------CLKLLSGA  331 (456)
T ss_pred             CCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee------------------------------------eeecccCC
Confidence            89999999999999999998 568999999885310                                    23444455


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce---eeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV---VNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      .....+..+.| +|++++++++..|+.+++||+..++.+..+.+|...   +.+...++.++++++|+.|+.|++|++.+
T Consensus       332 ~~~~~~~~~~f-sp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  332 ENSAPVTSVQF-SPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             CCCCceeEEEE-CCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            44324788888 999999999999999999999999999999998764   44555678999999999999999999997


Q ss_pred             cccc-ccccc-cccEEEEEEecCCcEEEeee--cCCceEEEEEec
Q 012712          417 ADRA-TLPTN-IEQVCFSIYSADYWWSKSQN--FSCSILLFEWLV  457 (458)
Q Consensus       417 ~~~~-~~~~~-~~~v~~~~~s~d~~~l~s~~--~d~~i~~w~~~~  457 (458)
                      +..+ .+.+| ...+..+.++|...++++++  .|+.+++|.+-.
T Consensus       411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~  455 (456)
T KOG0266|consen  411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF  455 (456)
T ss_pred             cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence            6554 67778 78899999999999999988  789999998743

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-37  Score=249.33  Aligned_cols=286  Identities=13%  Similarity=0.174  Sum_probs=234.3

Q ss_pred             eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEE
Q 012712           99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH  177 (458)
Q Consensus        99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  177 (458)
                      ++..|..+|.-+.|++  +|++||+++.|.+..+|.+..... ...+.+.+|..+|..+.|+||. ++|++|+.|..+.+
T Consensus       219 il~~htdEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSL  295 (519)
T ss_pred             hHhhCCCcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheee
Confidence            3478999999999999  999999999999999999876554 2234588999999999999999 67888888889999


Q ss_pred             EeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      ||+.++.....+...         ....+.+++|.|| +..+++|+.|+.+..||+.......               ..
T Consensus       296 wDv~tgd~~~~y~~~---------~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn~~~~---------------W~  350 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSG---------LGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGNILGN---------------WE  350 (519)
T ss_pred             ccCCcchhhhhcccC---------cCCCcceeEEccC-CceeEecCCCCcEEEecCCcchhhc---------------cc
Confidence            999999987776522         2346899999998 7899999999999999998764221               11


Q ss_pred             cccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          258 GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                      .-....|.+++..+||+++++.. +..|++|+..+..                                      .....
T Consensus       351 gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--------------------------------------dr~li  392 (519)
T KOG0293|consen  351 GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--------------------------------------DRGLI  392 (519)
T ss_pred             ccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--------------------------------------hhccc
Confidence            11235699999999999877766 5589999987631                                      12222


Q ss_pred             cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce--eeEEEec-CCCCeEEEeecCCcEEEec
Q 012712          337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV--VNCIEPH-PHSTVLASSGIESDIKILT  413 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s-~~~~~l~s~~~d~~i~iw~  413 (458)
                      ..+.   .|++.+. |.|++++++--.+..+++||++..+.++.+.||...  +..-+|- -+..++++|++|+.|+||+
T Consensus       393 se~~---~its~~i-S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh  468 (519)
T KOG0293|consen  393 SEEQ---PITSFSI-SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH  468 (519)
T ss_pred             cccC---ceeEEEE-cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence            2232   3888888 999999999999999999999999999999998753  3333554 3457999999999999999


Q ss_pred             CCccccc-ccccccccEEEEEEecCC-cEEEeeecCCceEEEE
Q 012712          414 PNAADRA-TLPTNIEQVCFSIYSADY-WWSKSQNFSCSILLFE  454 (458)
Q Consensus       414 ~~~~~~~-~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~  454 (458)
                      ..+++++ .+.+|...|.+++|+|.. ..+|+++.||+|+||-
T Consensus       469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            9999876 789999999999999988 7789999999999995

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-36  Score=262.24  Aligned_cols=348  Identities=16%  Similarity=0.211  Sum_probs=271.8

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      ..++|.|..+.++++--.|.|++||..-|.++.+                     |..|.++|+.++|+|.+.++++|+.
T Consensus        13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---------------------FdeHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen   13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---------------------FDEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             cceecCCCCCEEEEeecCceeeeehhhhhhHHhh---------------------hhccCCccceeeecCCCCeEEecCC
Confidence            4578999999999999999999999998888854                     8999999999999999999999999


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      |-.|+||+.++.+++.++ .+|-.-|..+.|++  .-.+|+++|.|.+|+||+..+.+++..  +.+|...|.|..|+|.
T Consensus        72 DykIkVWnYk~rrclftL-~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iav--ltGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAV--LTGHNHYVMCAQFHPT  146 (1202)
T ss_pred             ccEEEEEecccceehhhh-ccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEE--EecCceEEEeeccCCc
Confidence            999999999999998888 79999999999999  999999999999999999999998877  9999999999999998


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeee--------cc-------------cCCCCcceeecceEEEEECCCCCcEEE
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTC--------RP-------------IDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~-------------~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                      . .++++++-|.+|++||+...+....-..        .+             ..-.+|  |...|+-++|+|. -.+|+
T Consensus       147 E-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG--HDRGVNwaAfhpT-lpliV  222 (1202)
T KOG0292|consen  147 E-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG--HDRGVNWAAFHPT-LPLIV  222 (1202)
T ss_pred             c-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc--cccccceEEecCC-cceEE
Confidence            7 6899999999999999864322111000        00             011234  4457999999998 57999


Q ss_pred             EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCC
Q 012712          221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~  299 (458)
                      +|+.|+.|++|.+...+.-             ......+|.+.|.++-|+|...++++.++| .|++||+..        
T Consensus       223 SG~DDRqVKlWrmnetKaW-------------EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k--------  281 (1202)
T KOG0292|consen  223 SGADDRQVKLWRMNETKAW-------------EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK--------  281 (1202)
T ss_pred             ecCCcceeeEEEeccccce-------------eehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc--------
Confidence            9999999999999765421             133566789999999999999999999965 799999987        


Q ss_pred             CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR  379 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  379 (458)
                                                    +..++.++.....  ...++. +|..+++++|- |+-+.+|.++...   
T Consensus       282 ------------------------------Rt~v~tfrrendR--FW~laa-hP~lNLfAAgH-DsGm~VFkleREr---  324 (1202)
T KOG0292|consen  282 ------------------------------RTSVQTFRRENDR--FWILAA-HPELNLFAAGH-DSGMIVFKLERER---  324 (1202)
T ss_pred             ------------------------------ccceeeeeccCCe--EEEEEe-cCCcceeeeec-CCceEEEEEcccC---
Confidence                                          4566667654443  677777 99999888775 5556677664222   


Q ss_pred             EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc---cccc---ccccEEEEEEecCC-cEEEeeecCCc
Q 012712          380 VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA---TLPT---NIEQVCFSIYSADY-WWSKSQNFSCS  449 (458)
Q Consensus       380 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~---~~~~---~~~~v~~~~~s~d~-~~l~s~~~d~~  449 (458)
                             +..  +.  .++.|...- |..|+-+|+.+.+-.   .+..   ...++.++.++|.. ..|++...|+.
T Consensus       325 -------pa~--~v--~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~  389 (1202)
T KOG0292|consen  325 -------PAY--AV--NGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG  389 (1202)
T ss_pred             -------ceE--EE--cCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence                   222  22  233344443 889999998875332   1222   23568889999976 44555454443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-37  Score=233.87  Aligned_cols=287  Identities=16%  Similarity=0.218  Sum_probs=231.6

Q ss_pred             EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      .++||+.+++.+.|+.+|.+|.+++.|.+..||-..+|+.+-++ .+|++.|+++...-  +.+.+++|+.|.++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~--~s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDW--DSKHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecC--CcceeeeccccceeEEEEc
Confidence            36899999999999999999999999999999999899998888 89999999999998  9999999999999999999


Q ss_pred             ccccceeeeeccccccceEEEEEcCCCCeEEEEec-----CCCeEEEEeCCCCC-------ccceeeecccCCCCcceee
Q 012712          136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-----EDGLVQHFDLRTGA-------ATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~  203 (458)
                      ++++.+...  + ...+|..+.|++++ ++++.+.     ..+.|.++|++...       +...+..          +.
T Consensus        82 ~tGk~la~~--k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t----------~~  147 (327)
T KOG0643|consen   82 ETGKQLATW--K-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT----------PD  147 (327)
T ss_pred             CCCcEEEEe--e-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC----------Cc
Confidence            999988763  2 45789999999999 4444443     34689999998443       2222222          34


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-  282 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-  282 (458)
                      ..++.+.|.|- +..|++|.+||.|.+||+++++..              ......|...|+.++++|+..++++++.+ 
T Consensus       148 skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~--------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt  212 (327)
T KOG0643|consen  148 SKITSALWGPL-GETIIAGHEDGSISIYDARTGKEL--------------VDSDEEHSSKINDLQFSRDRTYFITGSKDT  212 (327)
T ss_pred             cceeeeeeccc-CCEEEEecCCCcEEEEEcccCcee--------------eechhhhccccccccccCCcceEEecccCc
Confidence            57899999998 789999999999999999997532              22334577799999999999999999965 


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      +.++||..+                                      ...++++....   ++++.++ +|-..+++.|+
T Consensus       213 takl~D~~t--------------------------------------l~v~Kty~te~---PvN~aai-sP~~d~VilgG  250 (327)
T KOG0643|consen  213 TAKLVDVRT--------------------------------------LEVLKTYTTER---PVNTAAI-SPLLDHVILGG  250 (327)
T ss_pred             cceeeeccc--------------------------------------eeeEEEeeecc---cccceec-ccccceEEecC
Confidence            799999987                                      44555555443   3888888 89877777765


Q ss_pred             CCCe--------------EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          363 DCGR--------------IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       363 ~dg~--------------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      ....              .++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++...+.
T Consensus       251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            3321              22333333355677889999999999999999999999999999986554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.6e-36  Score=238.46  Aligned_cols=273  Identities=21%  Similarity=0.330  Sum_probs=227.5

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC---CEEEEecCCCeEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGSDDRRVI   86 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~i~   86 (458)
                      ++.+++|+.||.+||||.. |+..                     ..+.||.++|.+++|.-..   ..|++++.|.+++
T Consensus       115 ~~~IltgsYDg~~riWd~~-Gk~~---------------------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~  172 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK-GKSI---------------------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR  172 (423)
T ss_pred             CceEEEeecCCeeEEEecC-CceE---------------------EEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence            6789999999999999999 7766                     4588999999988885433   3599999999999


Q ss_pred             EEECCCcceeeee---ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-----------------------c
Q 012712           87 LWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-----------------------G  140 (458)
Q Consensus        87 iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-----------------------~  140 (458)
                      +|.++.++.....   ..+|...|-++...+  ++..+++|+.|..|++|+..+..                       .
T Consensus       173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r  250 (423)
T KOG0313|consen  173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR  250 (423)
T ss_pred             EEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence            9999887653322   259999999999999  99999999999999999942211                       1


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                      .+...+.+|..+|.++.|++.  ..+++++.|.+|+.||+.++.....+.           ....+.++..+|. .++|+
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~-----------~~ksl~~i~~~~~-~~Ll~  316 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLT-----------TNKSLNCISYSPL-SKLLA  316 (423)
T ss_pred             CceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeee-----------cCcceeEeecccc-cceee
Confidence            122347799999999999994  478999999999999999999887776           3446899999997 78999


Q ss_pred             EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCC
Q 012712          221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS  300 (458)
Q Consensus       221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~  300 (458)
                      +|+.|..+++||.+++.                                   |                           
T Consensus       317 ~gssdr~irl~DPR~~~-----------------------------------g---------------------------  334 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGD-----------------------------------G---------------------------  334 (423)
T ss_pred             ecCCCCceeecCCCCCC-----------------------------------C---------------------------
Confidence            99999999999998753                                   1                           


Q ss_pred             CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEecCCe-EE
Q 012712          301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGE-LI  378 (458)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~  378 (458)
                                                   ....+.|.+|.+  .|.++.| +|.. ..|++|+.|+++++||+++.+ ++
T Consensus       335 -----------------------------s~v~~s~~gH~n--wVssvkw-sp~~~~~~~S~S~D~t~klWDvRS~k~pl  382 (423)
T KOG0313|consen  335 -----------------------------SVVSQSLIGHKN--WVSSVKW-SPTNEFQLVSGSYDNTVKLWDVRSTKAPL  382 (423)
T ss_pred             -----------------------------ceeEEeeecchh--hhhheec-CCCCceEEEEEecCCeEEEEEeccCCCcc
Confidence                                         112355677887  4888888 7755 467799999999999999887 99


Q ss_pred             EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      ..+.+|...|.++.|+ ++..|++||.|++|+|+.-.
T Consensus       383 ydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  383 YDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            9999999999999996 56789999999999998743

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.7e-35  Score=222.60  Aligned_cols=278  Identities=19%  Similarity=0.209  Sum_probs=232.9

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      +.+++|...|.+++|+.+|..|++|+.|+++++|+++..+..... ..+|.+.|-.++|.|. ....+++++.|..|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEE
Confidence            457899999999999999999999999999999999877543332 3689999999999984 67899999999999999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      |++.+++.......   ..-.-+.|+|+| .+++.+..|..|.+.|.++.+.....+           ....+..++|+-
T Consensus        93 d~r~~k~~~~i~~~---~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~-----------~~~e~ne~~w~~  157 (313)
T KOG1407|consen   93 DIRSGKCTARIETK---GENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQ-----------FKFEVNEISWNN  157 (313)
T ss_pred             EeccCcEEEEeecc---CcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhc-----------ccceeeeeeecC
Confidence            99999887663322   333458899999 678999999999999999887766554           333578888986


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCC
Q 012712          214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMG  292 (458)
Q Consensus       214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~  292 (458)
                      + +++|+.....|.|.|......+.               ...+..|.....|+.|+|+|+++|+|+.+ .+.+||++. 
T Consensus       158 ~-nd~Fflt~GlG~v~ILsypsLkp---------------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-  220 (313)
T KOG1407|consen  158 S-NDLFFLTNGLGCVEILSYPSLKP---------------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-  220 (313)
T ss_pred             C-CCEEEEecCCceEEEEecccccc---------------ccccccCCcceEEEEECCCCceEeeccccceeeccChhH-
Confidence            5 56777777789999998876652               34455678889999999999999999966 699999986 


Q ss_pred             CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                                                           ..+.+.+..+.-+  |+.+.| +.||++||+|++|..|-|=++
T Consensus       221 -------------------------------------LiC~R~isRldwp--VRTlSF-S~dg~~lASaSEDh~IDIA~v  260 (313)
T KOG1407|consen  221 -------------------------------------LICERCISRLDWP--VRTLSF-SHDGRMLASASEDHFIDIAEV  260 (313)
T ss_pred             -------------------------------------hhhheeeccccCc--eEEEEe-ccCcceeeccCccceEEeEec
Confidence                                                 5567777777765  899998 999999999999999999999


Q ss_pred             cCCeEEEEeecCCceeeEEEecCCCCeEEEeecC
Q 012712          373 KGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE  406 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  406 (458)
                      ++|..+..++ +.++...++|+|...+||.++.|
T Consensus       261 etGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  261 ETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            9999999887 67889999999999999988765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-35  Score=222.26  Aligned_cols=273  Identities=16%  Similarity=0.203  Sum_probs=226.0

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .|-|+-+|++.+|++.|.+||+||...|.++                     ++..+|...|..++.+.|...+++|+.|
T Consensus        22 avryN~dGnY~ltcGsdrtvrLWNp~rg~li---------------------ktYsghG~EVlD~~~s~Dnskf~s~GgD   80 (307)
T KOG0316|consen   22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALI---------------------KTYSGHGHEVLDAALSSDNSKFASCGGD   80 (307)
T ss_pred             EEEEccCCCEEEEcCCCceEEeeccccccee---------------------eeecCCCceeeeccccccccccccCCCC
Confidence            4668999999999999999999999988877                     4589999999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      +.+.+||+.+|+....+ .+|.+.|+.++|..  +...+++|+.|..+++||.++....+.+.+....+.|.++....  
T Consensus        81 k~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--  155 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--  155 (307)
T ss_pred             ceEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--
Confidence            99999999999999998 89999999999998  99999999999999999999887766666888889999999876  


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  242 (458)
                       +.+++|+.||+++.||++.|+....+.            ..+|++++|+++ ++..++++.|+++++.|-.++++++.+
T Consensus       156 -heIvaGS~DGtvRtydiR~G~l~sDy~------------g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  156 -HEIVAGSVDGTVRTYDIRKGTLSSDYF------------GHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             -cEEEeeccCCcEEEEEeecceeehhhc------------CCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh
Confidence             569999999999999999998765553            337999999998 789999999999999999999875542


Q ss_pred             cCCCCCCCcCCCcccccccc--ceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712          243 DFGQPADYFCPPNLIGDEQV--GITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA  319 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (458)
                      .               +|..  .-...+++.....+++|++ +.+++||+...                           
T Consensus       222 k---------------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---------------------------  259 (307)
T KOG0316|consen  222 K---------------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---------------------------  259 (307)
T ss_pred             c---------------ccccceeeeeeeecccceeEEeccCCceEEEEEeccc---------------------------
Confidence            2               2222  2344566777788999995 57999999874                           


Q ss_pred             cCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEE
Q 012712          320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK  371 (458)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd  371 (458)
                                 ..+..+..+... .+.++.+ +|...-++++. ++.+..|-
T Consensus       260 -----------~~~sk~~~~~~v-~v~dl~~-hp~~~~f~~A~-~~~~~~~~  297 (307)
T KOG0316|consen  260 -----------TQISKLSVVSTV-IVTDLSC-HPTMDDFITAT-GHGDLFWY  297 (307)
T ss_pred             -----------eeeeeeccCCce-eEEeeec-ccCccceeEec-CCceecee
Confidence                       233344433332 4788888 88877777665 34455664

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.5e-35  Score=251.03  Aligned_cols=383  Identities=15%  Similarity=0.170  Sum_probs=283.9

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecC----CCceEEEEEecCCCEEEEecCCCe
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH----RGCVNTVSFNTDGDILISGSDDRR   84 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d~~   84 (458)
                      ..+++++|+.+|+||+++.++-....+..-+-+-+++-... .+....+.+-    --...++.|+|....|.+...|..
T Consensus       269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~-~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhS  347 (1080)
T KOG1408|consen  269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL-SQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHS  347 (1080)
T ss_pred             ecceEEEeeccceeeecCcchhhhccccccccccccchhhc-ccccccccccCcccCCceeEEEecCCCceEEEEEcCce
Confidence            45789999999999999999877665533221111110000 0111111111    112347889998999999999999


Q ss_pred             EEEEECCCcceee---eeccCCCcceeEEEEccCC---------CCeEEEEEcCCCcEEEeecccccc--eeee-e----
Q 012712           85 VILWDWKTERVKL---SFHSGHNDNVFQAKIMPFT---------DDRSIVTCAADGQVRHAQILERGG--VETK-L----  145 (458)
Q Consensus        85 i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~---------~~~~l~s~~~dg~i~vw~~~~~~~--~~~~-~----  145 (458)
                      ++|||+++-..+.   .+ --|...|+.+.--|-+         ....++||+.|++|++|++.....  +..+ .    
T Consensus       348 lYvWDvrD~~kvgk~~s~-lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~  426 (1080)
T KOG1408|consen  348 LYVWDVRDVNKVGKCSSM-LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN  426 (1080)
T ss_pred             EEEEeccccccccceeee-eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence            9999998754332   22 3588888888766510         123589999999999999865211  1000 0    


Q ss_pred             ----------------------------ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712          146 ----------------------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR  197 (458)
Q Consensus       146 ----------------------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  197 (458)
                                                  ..+....+.+++.+|++ +.|++|..-|.+++|++...+....+..      
T Consensus       427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eA------  499 (1080)
T KOG1408|consen  427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEA------  499 (1080)
T ss_pred             hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheec------
Confidence                                        00123468999999999 7899999999999999988776655554      


Q ss_pred             CcceeecceEEEEECCC--CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--
Q 012712          198 RNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--  273 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  273 (458)
                          |...|.|+.|+--  ..++|++++.|+-|++||+...-              .+.....+|...|+++.|..+|  
T Consensus       500 ----HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny--------------~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  500 ----HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY--------------DLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             ----ccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc--------------chhhhhcccccceeEEEEeecCCc
Confidence                5668999999752  24689999999999999997642              3355677889999999999887  


Q ss_pred             cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc---cceeeeeEEEE
Q 012712          274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH---RNCVTVKGVNF  350 (458)
Q Consensus       274 ~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~  350 (458)
                      ..+++++.++...|+......                                     ....+..|   ....++..++.
T Consensus       562 ~~MiscGADksimFr~~qk~~-------------------------------------~g~~f~r~t~t~~ktTlYDm~V  604 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKAS-------------------------------------SGRLFPRHTQTLSKTTLYDMAV  604 (1080)
T ss_pred             eEEEeccCchhhheehhcccc-------------------------------------CceeccccccccccceEEEeee
Confidence            566777766555555443110                                     01111111   12235889998


Q ss_pred             ecCCCcEEEEecCCCeEEEEEecCCeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-cccccc
Q 012712          351 FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNI  426 (458)
Q Consensus       351 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~  426 (458)
                       .|..+++++++.|..|+||++++++..+.|++   |.+....+...|.|-|||+...|+++.++|..++++. ++.+|.
T Consensus       605 -dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs  683 (1080)
T KOG1408|consen  605 -DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS  683 (1080)
T ss_pred             -CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence             99999999999999999999999999999975   6677888999999999999999999999999999987 788999


Q ss_pred             ccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          427 EQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       427 ~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +-|+.+.|++|.+.|++.+.||.|+||..-
T Consensus       684 E~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  684 EAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             hheeeeeecccchhheeecCCceEEEEECc
Confidence            999999999999999999999999999863

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.1e-35  Score=244.84  Aligned_cols=302  Identities=16%  Similarity=0.201  Sum_probs=234.5

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce----eeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      ....+++|+..|.++++.|.|-.|++|+.|-+|++||+.....    ...+.......|.++.|++  .+..|++.+...
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~--Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV--TGDQILVVSGSA  236 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC--CCCeEEEEecCc
Confidence            3446789999999999999999999999999999999875432    2333344556899999999  888888888888


Q ss_pred             cEEEeecccccceee----------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCC
Q 012712          129 QVRHAQILERGGVET----------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDR  197 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~  197 (458)
                      ..+|+|-........          ...++|...+++.+|+|.....|++++.||++++||+...+. .+.+....... 
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g-  315 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG-  315 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC-
Confidence            999998644332211          124689999999999999988999999999999999976543 33443322221 


Q ss_pred             CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc--ceeEEEeCCCCcE
Q 012712          198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV--GITGLAFSDQSEL  275 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~  275 (458)
                          ...+++.++|+|+ +.+||+|+.||.|.+|+.+......            ...+...|..  .|+++.||++|++
T Consensus       316 ----~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p------------~~~vk~AH~~g~~Itsi~FS~dg~~  378 (641)
T KOG0772|consen  316 ----KRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRP------------VMKVKDAHLPGQDITSISFSYDGNY  378 (641)
T ss_pred             ----cccCceeeecCCC-cchhhhcccCCceeeeecCCccccc------------ceEeeeccCCCCceeEEEeccccch
Confidence                3447899999998 7899999999999999986543211            1233445555  8999999999999


Q ss_pred             EEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712          276 LVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK  354 (458)
Q Consensus       276 l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~  354 (458)
                      |++-+ ++++++||++..+.                                     ++....+-.+...-+.++| ||+
T Consensus       379 LlSRg~D~tLKvWDLrq~kk-------------------------------------pL~~~tgL~t~~~~tdc~F-SPd  420 (641)
T KOG0772|consen  379 LLSRGFDDTLKVWDLRQFKK-------------------------------------PLNVRTGLPTPFPGTDCCF-SPD  420 (641)
T ss_pred             hhhccCCCceeeeecccccc-------------------------------------chhhhcCCCccCCCCcccc-CCC
Confidence            99987 66899999987532                                     3333333333333466777 999


Q ss_pred             CcEEEEecC------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          355 CEYVVSGSD------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       355 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      .++|++|+.      .|++.+||..+.+.+..+.-....|..+.|+|.-+.|..|+.||++++|
T Consensus       421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            999999863      4789999999999999888778889999999999999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=229.28  Aligned_cols=275  Identities=18%  Similarity=0.277  Sum_probs=235.9

Q ss_pred             CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEE
Q 012712            7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI   86 (458)
Q Consensus         7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   86 (458)
                      -|+|-.|++++.||.=.+-+-+||..+.                     +|.||++.|.+..+..+....|+++.|=+-+
T Consensus        26 tp~g~flisa~kd~~pmlr~g~tgdwig---------------------tfeghkgavw~~~l~~na~~aasaaadftak   84 (334)
T KOG0278|consen   26 TPDGYFLISASKDGKPMLRNGDTGDWIG---------------------TFEGHKGAVWSATLNKNATRAASAAADFTAK   84 (334)
T ss_pred             CCCceEEEEeccCCCchhccCCCCCcEE---------------------eeeccCcceeeeecCchhhhhhhhcccchhh
Confidence            3678889999999999999999999884                     5999999999999999988999999999999


Q ss_pred             EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712           87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF  166 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  166 (458)
                      |||.-+|..++.+  .|..-|.+++|+.  |.++|++|+.+..++++|++..+..+ ..+.+|++.|..+.|.... +.+
T Consensus        85 vw~a~tgdelhsf--~hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD-~~i  158 (334)
T KOG0278|consen   85 VWDAVTGDELHSF--EHKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHED-KCI  158 (334)
T ss_pred             hhhhhhhhhhhhh--hhhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccC-ceE
Confidence            9999999999998  6888999999999  99999999999999999998776544 3488999999999999877 678


Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCC
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ  246 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  246 (458)
                      ++++.|++|++||.+++..++.+.           ...+|+++..+++ +.++. -...+.|.+||..+...++...+  
T Consensus       159 LSSadd~tVRLWD~rTgt~v~sL~-----------~~s~VtSlEvs~d-G~ilT-ia~gssV~Fwdaksf~~lKs~k~--  223 (334)
T KOG0278|consen  159 LSSADDKTVRLWDHRTGTEVQSLE-----------FNSPVTSLEVSQD-GRILT-IAYGSSVKFWDAKSFGLLKSYKM--  223 (334)
T ss_pred             EeeccCCceEEEEeccCcEEEEEe-----------cCCCCcceeeccC-CCEEE-EecCceeEEeccccccceeeccC--
Confidence            888999999999999999998887           4457999999998 55554 44567899999999876554332  


Q ss_pred             CCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 012712          247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA  325 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (458)
                                    ...|.+...+|+...+++|+++ .++.||..++.                                
T Consensus       224 --------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--------------------------------  257 (334)
T KOG0278|consen  224 --------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--------------------------------  257 (334)
T ss_pred             --------------ccccccccccCCCceEEecCcceEEEEEeccCCc--------------------------------
Confidence                          3568888999999888888866 79999999853                                


Q ss_pred             CcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712          326 NTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       326 ~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  378 (458)
                            .+..+ ++|.++  |.++.| +|||...++|++||+|+||.+..++..
T Consensus       258 ------Ei~~~nkgh~gp--VhcVrF-SPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  258 ------EIGSYNKGHFGP--VHCVRF-SPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ------eeeecccCCCCc--eEEEEE-CCCCceeeccCCCceEEEEEecCCCch
Confidence                  33333 778885  999999 999999999999999999998766543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7e-35  Score=232.62  Aligned_cols=306  Identities=14%  Similarity=0.210  Sum_probs=235.1

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCC-CCeEEEEEcCCCcEEEeeccc
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILE  137 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~  137 (458)
                      -|.+-|.++...  ++.++||++||.+++||.. |+....+ .+|.++|.+++|.-.. ....+++++.|.++++|.++.
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            378888888877  7799999999999999965 6776766 7999999988886521 233599999999999999987


Q ss_pred             ccceeee--eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          138 RGGVETK--LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       138 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      ++.....  ...+|...|.++...+++ ..+++|+.|.+|.+|+..+. ....+.                 ...--+  
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~-~~~~~E-----------------~~s~~r--  237 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETD-EEDELE-----------------SSSNRR--  237 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCC-cccccc-----------------ccchhh--
Confidence            7654332  234999999999999999 78999999999999993322 111111                 000000  


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG  294 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~  294 (458)
                                        +..+.     ..+......|.....+|..+|.++.|++ ...+.+++ |.+|+.||+.++. 
T Consensus       238 ------------------rk~~~-----~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~-  292 (423)
T KOG0313|consen  238 ------------------RKKQK-----REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG-  292 (423)
T ss_pred             ------------------hhhhh-----hhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc-
Confidence                              00000     0001112235567788999999999999 55677777 5589999999853 


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                           ....+.+...   ++++.+ +|..++|++|+.|..+++||.++
T Consensus       293 -------------------------------------~~~~~~~~ks---l~~i~~-~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  293 -------------------------------------LKSTLTTNKS---LNCISY-SPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             -------------------------------------ceeeeecCcc---eeEeec-ccccceeeecCCCCceeecCCCC
Confidence                                                 3344444443   788998 99999999999999999999876


Q ss_pred             Ce---EEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCccc--ccccccccccEEEEEEecCCcEEEeeecCC
Q 012712          375 GE---LIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD--RATLPTNIEQVCFSIYSADYWWSKSQNFSC  448 (458)
Q Consensus       375 ~~---~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~  448 (458)
                      +.   ...++.+|.+.|.++.|+|... +|++++.|+++++||+.+..  +..+.+|...|.++.|. ++.++++|+.|+
T Consensus       332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~  410 (423)
T KOG0313|consen  332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADN  410 (423)
T ss_pred             CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcc
Confidence            52   4467899999999999999766 68899999999999998765  45889999999999998 677889999999


Q ss_pred             ceEEEEEe
Q 012712          449 SILLFEWL  456 (458)
Q Consensus       449 ~i~~w~~~  456 (458)
                      .|++++..
T Consensus       411 ~l~i~~~~  418 (423)
T KOG0313|consen  411 KLRIFKGS  418 (423)
T ss_pred             eEEEeccc
Confidence            99999753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=260.72  Aligned_cols=258  Identities=20%  Similarity=0.314  Sum_probs=207.2

Q ss_pred             eeeeEee-cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc-------------------------------------
Q 012712           52 GIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-------------------------------------   93 (458)
Q Consensus        52 ~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-------------------------------------   93 (458)
                      ...+.+. .|++.|.++.||+||+|||+||.|+.|+||.+...                                     
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            4556677 99999999999999999999999999999987650                                     


Q ss_pred             -----------------------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712           94 -----------------------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ  150 (458)
Q Consensus        94 -----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  150 (458)
                                             +++.. ..+|.+.|.++.|+   ..++|++++.|.+|++|++...+++..   ..|.
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~---F~Hn  409 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKV---FSHN  409 (712)
T ss_pred             cccccccCCccccCCCccccccccchhh-hhccchhheecccc---cCCeeEeccccccEEeecCCCcceeeE---EecC
Confidence                                   00112 26899999999999   577999999999999999998887764   4599


Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      +.|+|++|+|-+.++|++|+-||.|+||++...+.+.-..+.           .-|++++|.|+ |+..++|+.+|.+++
T Consensus       410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------~lITAvcy~Pd-Gk~avIGt~~G~C~f  477 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-----------DLITAVCYSPD-GKGAVIGTFNGYCRF  477 (712)
T ss_pred             CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-----------hhheeEEeccC-CceEEEEEeccEEEE
Confidence            999999999988899999999999999999887765544432           25899999998 799999999999999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      |+....+..........      ......+ ..|+++.|.|..  ++|++..|..|+|||.++                 
T Consensus       478 Y~t~~lk~~~~~~I~~~------~~Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-----------------  533 (712)
T KOG0283|consen  478 YDTEGLKLVSDFHIRLH------NKKKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-----------------  533 (712)
T ss_pred             EEccCCeEEEeeeEeec------cCccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc-----------------
Confidence            99998876443222110      0011112 389999999864  488888888999999976                 


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                           ..++..|+|..+...-....| +.||++|+++++|..|++|+...
T Consensus       534 ---------------------~~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  534 ---------------------KDLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ---------------------hhhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEEEeCCC
Confidence                                 456677777776545556666 89999999999999999999743

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.6e-34  Score=245.78  Aligned_cols=404  Identities=16%  Similarity=0.175  Sum_probs=286.9

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC---CEEEEecCCCe
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGSDDRR   84 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~   84 (458)
                      ++.-+|+.|+.+..|.++.-.++                   ++..+..+.||.+.|.+++|...+   -+||++|.|..
T Consensus       157 ~~~~lla~Ggs~~~v~~~s~~~d-------------------~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y  217 (764)
T KOG1063|consen  157 NKTFLLACGGSKFVVDLYSSSAD-------------------SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY  217 (764)
T ss_pred             CCcEEEEecCcceEEEEeccCCc-------------------ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE
Confidence            34445777888887877766533                   345668899999999999998755   48999999999


Q ss_pred             EEEEECCCcc------------------------eee------eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712           85 VILWDWKTER------------------------VKL------SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ  134 (458)
Q Consensus        85 i~iwd~~~~~------------------------~~~------~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~  134 (458)
                      ||||.+.-+.                        .+.      .++.+|.+.|+++.|+|  .+..|++++.|.++.+|.
T Consensus       218 IRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~  295 (764)
T KOG1063|consen  218 IRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWK  295 (764)
T ss_pred             EEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEe
Confidence            9999864322                        011      22469999999999999  999999999999999999


Q ss_pred             cccccceee-----eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          135 ILERGGVET-----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       135 ~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      ..+...+..     -...+.........|+|++ +.+++-+.-|..++|.......     ........|  |...|..+
T Consensus       296 pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~-----w~~~~~iSG--H~~~V~dv  367 (764)
T KOG1063|consen  296 PDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTF-----WTQEPVISG--HVDGVKDV  367 (764)
T ss_pred             cCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccc-----eeecccccc--ccccceee
Confidence            876643321     1123344567889999999 7889999999999998322211     111111233  55579999


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc-EEEEE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF-IYLFT  288 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-i~i~~  288 (458)
                      +|+|. |.++++.+.|.+-|+|-.-..+ ..-.++          ...+-|...++|+++-+....+++|.+.+ +++|+
T Consensus       368 ~W~ps-GeflLsvs~DQTTRlFa~wg~q-~~wHEi----------aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~  435 (764)
T KOG1063|consen  368 DWDPS-GEFLLSVSLDQTTRLFARWGRQ-QEWHEI----------ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE  435 (764)
T ss_pred             eecCC-CCEEEEeccccceeeecccccc-cceeee----------cccccccccceeeehccCCceeeecccceeeeeec
Confidence            99998 7899999999999998765222 111122          22334677899999999766777777764 78998


Q ss_pred             ccCCC----------CCCCC----CCCCccccccc-cccCC----CCcc------cc-C----CCCCC--------cccc
Q 012712          289 QDMGL----------GPNPP----PSSPVSTRSEA-SEMGS----DHTS------AA-S----PSTAN--------TDVR  330 (458)
Q Consensus       289 ~~~~~----------~~~~~----~~~~~~~~~~~-~~~~~----~~~~------~~-~----~~~~~--------~~~~  330 (458)
                      ....-          .....    .+......+.+ ..+.+    ++..      .. .    .....        ....
T Consensus       436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw  515 (764)
T KOG1063|consen  436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW  515 (764)
T ss_pred             CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence            65321          00000    00000000000 01110    0000      00 0    00000        1123


Q ss_pred             cCceeecCccceeeeeEEEEecCCCcEEEEecCC-----CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec
Q 012712          331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI  405 (458)
Q Consensus       331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  405 (458)
                      +..+++.||...  |.+++. +|+|+++|+++..     ..|++|+..+...++.+.+|+-.|+.|+|||||++|++++.
T Consensus       516 PEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR  592 (764)
T KOG1063|consen  516 PEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR  592 (764)
T ss_pred             hhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence            456677888885  999998 9999999998754     46999999999999999999999999999999999999999


Q ss_pred             CCcEEEecCCccccc-----ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          406 ESDIKILTPNAADRA-----TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       406 d~~i~iw~~~~~~~~-----~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      |.++.+|+.......     ....|..-|++..|+|+++++||++.|..|+||..
T Consensus       593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            999999998655332     35677777999999999999999999999999975

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=249.84  Aligned_cols=352  Identities=58%  Similarity=0.982  Sum_probs=296.6

Q ss_pred             cccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccC
Q 012712           36 NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF  115 (458)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  115 (458)
                      .|...+.++...+.++.+...|.+|.+.|..+.|...|..|++|+.|..|.+||+..+..+..+..+|...|....|.|+
T Consensus       117 ~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~  196 (559)
T KOG1334|consen  117 RFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF  196 (559)
T ss_pred             HHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC
Confidence            45557778888888999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEcCCCcEEEeeccccccee-eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712          116 TDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI  194 (458)
Q Consensus       116 ~~~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  194 (458)
                      .+...+++++.||.+++=.+...+... +..+..|.++|..++.-|+.++-|++++.|+.+.-+|++++.+...+.+...
T Consensus       197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~  276 (559)
T KOG1334|consen  197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA  276 (559)
T ss_pred             CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence            888999999999999998876554433 5557889999999999999999999999999999999999988777765443


Q ss_pred             CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-C
Q 012712          195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S  273 (458)
Q Consensus       195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~  273 (458)
                      ...    .......++.+|.+.+.+++++.|-.+++||.+.......   ..++..+++.++.......|++++|+.+ +
T Consensus       277 ~~~----~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~---n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  277 DEK----ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN---NGVLDKFCPHHLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             CCc----cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc---cchhhhcCCccccccCcccceeEEecCCcc
Confidence            221    1235789999999888999999999999999987654322   3366778888888877889999999955 5


Q ss_pred             cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712          274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP  353 (458)
Q Consensus       274 ~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~  353 (458)
                      .+|++..+..|++|....+....+.+..+.                         .....+.+++|.+..+|.++.||.|
T Consensus       350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~-------------------------~~~~k~vYKGHrN~~TVKgVNFfGP  404 (559)
T KOG1334|consen  350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPR-------------------------EQYVKRVYKGHRNSRTVKGVNFFGP  404 (559)
T ss_pred             ceeeeecccceEEeccccccCCCCCCCcch-------------------------hhccchhhcccccccccceeeeccC
Confidence            788888888999996655443333221111                         0223344999999999999999999


Q ss_pred             CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       354 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      ...|+++|++-|.|.||+-.+++.++.+++....|+||.-+|.-..||+.|-|..|+||...+.+.
T Consensus       405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence            999999999999999999999999999998777999999999999999999999999999865443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-34  Score=218.55  Aligned_cols=290  Identities=16%  Similarity=0.158  Sum_probs=235.8

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD  179 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  179 (458)
                      +.+|..+++.+.|+.  +|.+|++|+.|....+|-..+++.+-+  +.+|++.|.++..+.+. ..+++|+.|.++++||
T Consensus         6 l~GHERplTqiKyN~--eGDLlFscaKD~~~~vw~s~nGerlGt--y~GHtGavW~~Did~~s-~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNR--EGDLLFSCAKDSTPTVWYSLNGERLGT--YDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWD   80 (327)
T ss_pred             cccCccccceEEecC--CCcEEEEecCCCCceEEEecCCceeee--ecCCCceEEEEEecCCc-ceeeeccccceeEEEE
Confidence            479999999999999  999999999999999999888888877  89999999999999988 6899999999999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-----CCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-----SDEYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      +++|+.+..+.           ...+|..+.|+++ +++++...     ..+.|.++|++.......        ...|.
T Consensus        81 v~tGk~la~~k-----------~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--------s~ep~  140 (327)
T KOG0643|consen   81 VETGKQLATWK-----------TNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDID--------SEEPY  140 (327)
T ss_pred             cCCCcEEEEee-----------cCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhc--------ccCce
Confidence            99999988887           4557999999997 56666654     346799999986532110        11122


Q ss_pred             ccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712          255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP  333 (458)
Q Consensus       255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (458)
                      .....+...++.+.|.|-+++|++|. ++.|.+||+.++.                                     +.+
T Consensus       141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------------------------------------~~v  183 (327)
T KOG0643|consen  141 LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------------------------------------ELV  183 (327)
T ss_pred             EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------------------------------------eee
Confidence            33344568899999999999999998 5589999999863                                     233


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCc-----
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD-----  408 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~-----  408 (458)
                      ..-..|..  .|+.+++ ++|..++++++.|.+-++||..+.+.++++.. ..+|++.+++|....++.|+....     
T Consensus       184 ~s~~~h~~--~Ind~q~-s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTT  259 (327)
T KOG0643|consen  184 DSDEEHSS--KINDLQF-SRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTT  259 (327)
T ss_pred             echhhhcc--ccccccc-cCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeee
Confidence            34445555  4899998 99999999999999999999999999999874 568999999998777776653221     


Q ss_pred             ---------EEEecCCcc-cccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          409 ---------IKILTPNAA-DRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       409 ---------i~iw~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                               -++|++-.. +...+.+|.++|++++|+|||+..++|++||.|++..+
T Consensus       260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             ecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence                     223333322 34478899999999999999999999999999998754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=6.1e-33  Score=238.24  Aligned_cols=403  Identities=16%  Similarity=0.189  Sum_probs=286.7

Q ss_pred             CCCCCCCCC---CeEEEeeCCCcEEEEEccccccccc----cccccccc-----c-ccceEEeeeeeEeecCCCceEEEE
Q 012712            2 DDASNNNNN---KRARTSVDKALVDVWLRELGQLSTR----NFALRRRA-----S-EDLVLRLGIYAKLDKHRGCVNTVS   68 (458)
Q Consensus         2 ~~~~~~~~~---~~l~~~~~d~~i~iw~~~~g~~~~~----~~~~~~~~-----~-~~~~~~~~~~~~~~~h~~~v~~~~   68 (458)
                      +++.|...+   -+|++++.|..||||.+.-+.....    .+......     . .....++.....+.||++-|.++.
T Consensus       195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~  274 (764)
T KOG1063|consen  195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW  274 (764)
T ss_pred             hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence            344444433   4799999999999999876553321    11111000     0 001112233345679999999999


Q ss_pred             EecCCCEEEEecCCCeEEEEECCCccee----eee--ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-ccce
Q 012712           69 FNTDGDILISGSDDRRVILWDWKTERVK----LSF--HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGV  141 (458)
Q Consensus        69 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-~~~~  141 (458)
                      |+|.+..|++++.|.++.+|..++..-+    .++  ..+.....+...|+|  +++.+++-+.-|..++|.... ....
T Consensus       275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~Gg~hlWkt~d~~~w~  352 (764)
T KOG1063|consen  275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTGGFHLWKTKDKTFWT  352 (764)
T ss_pred             EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccCcEEEEeccCcccee
Confidence            9999999999999999999987765221    111  133455688999999  999999999999999999333 2234


Q ss_pred             eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      +...+.+|.+.|+.++|+|.| .+|++.+.|.+-|++-.- ++...   .++....+-  |...++|++|-+. ...|++
T Consensus       353 ~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~w-g~q~~---wHEiaRPQi--HGyDl~c~~~vn~-~~~FVS  424 (764)
T KOG1063|consen  353 QEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARW-GRQQE---WHEIARPQI--HGYDLTCLSFVNE-DLQFVS  424 (764)
T ss_pred             eccccccccccceeeeecCCC-CEEEEeccccceeeeccc-ccccc---eeeeccccc--ccccceeeehccC-Cceeee
Confidence            445578999999999999999 689999999999998654 22211   111111111  4557899999985 578999


Q ss_pred             ecCCCeEEEEecCCCc-----------cCCC--c---------------cC-------------------CCCCCCcCC-
Q 012712          222 AGSDEYTRLYDIRKYK-----------WDGS--T---------------DF-------------------GQPADYFCP-  253 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~~-----------~~~~--~---------------~~-------------------~~~~~~~~~-  253 (458)
                      |.....+|+|+....-           ....  .               .+                   ..|.....| 
T Consensus       425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP  504 (764)
T KOG1063|consen  425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP  504 (764)
T ss_pred             cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence            9999999999873210           0000  0               00                   000000000 


Q ss_pred             -------------CccccccccceeEEEeCCCCcEEEEecCC------cEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          254 -------------PNLIGDEQVGITGLAFSDQSELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       254 -------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                                   .+..-+|...|.+++.+|+|+++|+++..      .|++|+..+                       
T Consensus       505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-----------------------  561 (764)
T KOG1063|consen  505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-----------------------  561 (764)
T ss_pred             hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-----------------------
Confidence                         11223577899999999999999998732      399999887                       


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE----EEEeecCCceeeE
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL----IRVIEADRHVVNC  390 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~  390 (458)
                                     ....+.+.+|.-  +|+.++| ||||+||++.+.|.++.+|.......    ....+.|..-|.+
T Consensus       562 ---------------W~~~~~L~~HsL--TVT~l~F-Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd  623 (764)
T KOG1063|consen  562 ---------------WLQVQELEGHSL--TVTRLAF-SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD  623 (764)
T ss_pred             ---------------hhhhheecccce--EEEEEEE-CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE
Confidence                           344556778877  5999999 99999999999999999999754322    2336789999999


Q ss_pred             EEecCCCCeEEEeecCCcEEEecCCcc--ccc---ccccccccEEEEEEecCC-----cEEEeeecCCceEEEEE
Q 012712          391 IEPHPHSTVLASSGIESDIKILTPNAA--DRA---TLPTNIEQVCFSIYSADY-----WWSKSQNFSCSILLFEW  455 (458)
Q Consensus       391 ~~~s~~~~~l~s~~~d~~i~iw~~~~~--~~~---~~~~~~~~v~~~~~s~d~-----~~l~s~~~d~~i~~w~~  455 (458)
                      +.|+|+++++||+|.|++|++|.....  +..   ....+...|++++|.|--     ..++.|-..|.|.+|.+
T Consensus       624 csW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~  698 (764)
T KOG1063|consen  624 CSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR  698 (764)
T ss_pred             cccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence            999999999999999999999998876  222   345677789999987632     46788999999999985

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-34  Score=238.32  Aligned_cols=285  Identities=17%  Similarity=0.208  Sum_probs=236.8

Q ss_pred             CCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        61 ~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      .+.|.+++|+|... -+|+.+. -.+.||+..+......+ ......++++.|..  ||++|+.|...|.|+++|..+..
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r~  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSRV  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeec--CCeEEEccCCcCcEEEeccccHH
Confidence            46899999999553 2444444 46999999887776666 56788999999999  99999999999999999965533


Q ss_pred             ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      .+.  .+.+|+.++..+.|+|++..+|++|+.|+.+++||+.+......+.        +  +...|.|.+|+|.++.++
T Consensus       102 iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~--------~--htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen  102 ILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS--------G--HTDYVRCGDISPANDHIV  169 (487)
T ss_pred             HHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec--------C--CcceeEeeccccCCCeEE
Confidence            333  3889999999999999998999999999999999999887422222        2  566899999999888899


Q ss_pred             EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCC
Q 012712          220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~  299 (458)
                      ++|+.||.|++||++...               .....-.|..+|..+.+-|.|..+++++.+.+++||+.++       
T Consensus       170 vtGsYDg~vrl~DtR~~~---------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G-------  227 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDTRSLT---------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG-------  227 (487)
T ss_pred             EecCCCceEEEEEeccCC---------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC-------
Confidence            999999999999999863               1223345788999999999999999999999999999875       


Q ss_pred             CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR  379 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  379 (458)
                                                    ++.+.....|..  +|+|+++ ..++..|++|+-|+.+++||+.+.+.+.
T Consensus       228 ------------------------------~qll~~~~~H~K--tVTcL~l-~s~~~rLlS~sLD~~VKVfd~t~~Kvv~  274 (487)
T KOG0310|consen  228 ------------------------------GQLLTSMFNHNK--TVTCLRL-ASDSTRLLSGSLDRHVKVFDTTNYKVVH  274 (487)
T ss_pred             ------------------------------ceehhhhhcccc--eEEEEEe-ecCCceEeecccccceEEEEccceEEEE
Confidence                                          344455555666  4999998 7899999999999999999998888888


Q ss_pred             EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          380 VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       380 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      .+. ..++|.+++.+|+++.++.|..||.+.+=+....
T Consensus       275 s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  275 SWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             eee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence            886 5689999999999999999999999888755443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=4.7e-36  Score=241.86  Aligned_cols=289  Identities=20%  Similarity=0.271  Sum_probs=235.6

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce-eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      ....+..|.+.|..+.|-++...|++|+.|..|++|++...+. ....+.+..++|+++.|.+  ++..+++++.|+.++
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~--~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS--DNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC--CCceEEeecCCCcee
Confidence            3456788999999999999988999999999999999876551 2233367788999999999  999999999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      +|++...+...+  +.+|++.|+++.|.... ..+++|+.|.+|++||+....+.+.+.           ....+..++.
T Consensus       245 ~Wnvd~~r~~~T--LsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-----------~~S~cnDI~~  310 (459)
T KOG0288|consen  245 LWNVDSLRLRHT--LSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-----------PGSQCNDIVC  310 (459)
T ss_pred             eeeccchhhhhh--hcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-----------ccccccceEe
Confidence            999998887766  88999999999999877 458999999999999999987776654           2334667776


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712          212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD  290 (458)
Q Consensus       212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~  290 (458)
                      ++   ..+++|..|++|++||.++.......                +-.+.|+++..+++|..|.+++ ++.+.+.|+.
T Consensus       311 ~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv----------------~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR  371 (459)
T KOG0288|consen  311 SI---SDVISGHFDKKVRFWDIRSADKTRSV----------------PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR  371 (459)
T ss_pred             cc---eeeeecccccceEEEeccCCceeeEe----------------ecCcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence            63   57899999999999999987643221                1245899999999998777777 7799999998


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      +......+                                    .-.+.......+.+.| ||++.|+++|+.||.|+||
T Consensus       372 t~eI~~~~------------------------------------sA~g~k~asDwtrvvf-Spd~~YvaAGS~dgsv~iW  414 (459)
T KOG0288|consen  372 TKEIRQTF------------------------------------SAEGFKCASDWTRVVF-SPDGSYVAAGSADGSVYIW  414 (459)
T ss_pred             cccEEEEe------------------------------------eccccccccccceeEE-CCCCceeeeccCCCcEEEE
Confidence            74322211                                    1112222223677887 9999999999999999999


Q ss_pred             EecCCeEEEEeecCCc--eeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          371 KKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       371 d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ++.++++...+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       415 ~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  415 SVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            9999999988876443  599999999999999999999999994

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=248.28  Aligned_cols=404  Identities=14%  Similarity=0.111  Sum_probs=274.2

Q ss_pred             CCCCCCCCCeEEEee--CCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            3 DASNNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~--~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      .++|+++|+++|||-  ..-.+++|++.+...+                     ..|..|+-.|+|++|+|.++|+++.+
T Consensus        83 ~vAfS~~GryvatGEcG~~pa~kVw~la~h~vV---------------------AEfvdHKY~vtcvaFsp~~kyvvSVG  141 (1080)
T KOG1408|consen   83 CVAFSQNGRYVATGECGRTPASKVWSLAFHGVV---------------------AEFVDHKYNVTCVAFSPGNKYVVSVG  141 (1080)
T ss_pred             EEEEcCCCcEEEecccCCCccceeeeeccccch---------------------hhhhhccccceeeeecCCCcEEEeec
Confidence            478999999999986  6677999999966544                     45889999999999999999999876


Q ss_pred             C--CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee-eec-----------
Q 012712           81 D--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLL-----------  146 (458)
Q Consensus        81 ~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~-~~~-----------  146 (458)
                      .  |-.|.+||++.+.....  ..-...|..++|+.  |+.+++|++. ..|++|.+..++.... ..+           
T Consensus       142 sQHDMIVnv~dWr~N~~~as--nkiss~Vsav~fsE--dgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr  216 (1080)
T KOG1408|consen  142 SQHDMIVNVNDWRVNSSGAS--NKISSVVSAVAFSE--DGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR  216 (1080)
T ss_pred             cccceEEEhhhhhhcccccc--cccceeEEEEEEcc--CCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccc
Confidence            5  55778898876544333  23456899999999  9999999885 6899999876552100 000           


Q ss_pred             -----------------------cc-----------------cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712          147 -----------------------GK-----------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT  186 (458)
Q Consensus       147 -----------------------~~-----------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  186 (458)
                                             .+                 .+...+||+.+.   .++++|+.+|.|++|+..+....
T Consensus       217 ~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~---r~I~cgCa~g~vrlFnp~tL~y~  293 (1080)
T KOG1408|consen  217 FNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSS---RLIACGCAKGMVRLFNPETLDYA  293 (1080)
T ss_pred             cchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeec---ceEEEeeccceeeecCcchhhhc
Confidence                                   00                 112234555554   57899999999999998876554


Q ss_pred             ceeeecccCC------------C--CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcC
Q 012712          187 ELFTCRPIDD------------R--RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC  252 (458)
Q Consensus       187 ~~~~~~~~~~------------~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  252 (458)
                      .++.......            .  .....-....++.|+|. ...+.+...|..+++||++..+....           
T Consensus       294 ~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk-----------  361 (1080)
T KOG1408|consen  294 GTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGK-----------  361 (1080)
T ss_pred             cccccccccccchhhcccccccccccCcccCCceeEEEecCC-CceEEEEEcCceEEEEeccccccccc-----------
Confidence            4433211100            0  00001112457789987 57888899999999999998765433           


Q ss_pred             CCccccccccceeEEEeCC------------CCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          253 PPNLIGDEQVGITGLAFSD------------QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       253 ~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                       ...+-.|...|+.+.--|            .+.++.+.+|++|++|++........+................+...+.
T Consensus       362 -~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~  440 (1080)
T KOG1408|consen  362 -CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM  440 (1080)
T ss_pred             -eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence             112223445555554333            3445555558899999998754333322111111111111111111110


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC---CC
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP---HS  397 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~  397 (458)
                      .......-.......+.+..   .+++++. +|+|++||+|..-|++++|++...+....+.+|...|.++.+|.   ..
T Consensus       441 ~d~~~~~fdka~~s~~d~r~---G~R~~~v-Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~  516 (1080)
T KOG1408|consen  441 HDASAGIFDKALVSTCDSRF---GFRALAV-SPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN  516 (1080)
T ss_pred             hhccCCcccccchhhcCccc---ceEEEEE-CCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence            00000000011112222222   3899998 99999999999999999999999999999999999999999984   35


Q ss_pred             CeEEEeecCCcEEEecCCccc--ccccccccccEEEEEEecCC--cEEEeeecCCceEE
Q 012712          398 TVLASSGIESDIKILTPNAAD--RATLPTNIEQVCFSIYSADY--WWSKSQNFSCSILL  452 (458)
Q Consensus       398 ~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~v~~~~~s~d~--~~l~s~~~d~~i~~  452 (458)
                      ++||+++.|..|+|||+...-  ..++.+|...|+++.|...|  ..+++++.|..|.+
T Consensus       517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF  575 (1080)
T KOG1408|consen  517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF  575 (1080)
T ss_pred             HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe
Confidence            799999999999999998763  34788899999999999998  77889999988754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=232.32  Aligned_cols=286  Identities=15%  Similarity=0.184  Sum_probs=235.2

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee-------ccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      +.+..+-|..|||||++|++|+.||.|.+|+..+|+....+       ..-+..+|.|+.|+.  |.+.|++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEE
Confidence            56677899999999999999999999999999998764433       134778999999999  999999999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      +|.+.++.++... -..|+..|+++.|+.|+ ..+++++.|.++++.-+..|++.+.++.          |...|+...|
T Consensus       289 vWri~tG~ClRrF-drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrG----------HsSyvn~a~f  356 (508)
T KOG0275|consen  289 VWRIETGQCLRRF-DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRG----------HSSYVNEATF  356 (508)
T ss_pred             EEEEecchHHHHh-hhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcC----------ccccccceEE
Confidence            9999999988762 23899999999999999 5789999999999999999999988864          5557999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712          212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~  291 (458)
                      .++ |+.+++++.||+|++|+.++.+....                           |-|-+                  
T Consensus       357 t~d-G~~iisaSsDgtvkvW~~KtteC~~T---------------------------fk~~~------------------  390 (508)
T KOG0275|consen  357 TDD-GHHIISASSDGTVKVWHGKTTECLST---------------------------FKPLG------------------  390 (508)
T ss_pred             cCC-CCeEEEecCCccEEEecCcchhhhhh---------------------------ccCCC------------------
Confidence            998 79999999999999999988763222                           11100                  


Q ss_pred             CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEE
Q 012712          292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK  371 (458)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd  371 (458)
                                                                       ....|+++..+..+-..++.+...++++|.+
T Consensus       391 -------------------------------------------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  391 -------------------------------------------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             -------------------------------------------------CcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence                                                             0001333333233445677777888999999


Q ss_pred             ecCCeEEEEeecC---CceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecC
Q 012712          372 KKGGELIRVIEAD---RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFS  447 (458)
Q Consensus       372 ~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d  447 (458)
                      + .|+.++.+...   .+.-.+.+.||.|.++.+.++|+.++.+.+.+|.+. .+.-|...+..++-+|..+.||+-++|
T Consensus       422 ~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED  500 (508)
T KOG0275|consen  422 M-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSED  500 (508)
T ss_pred             c-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhccc
Confidence            8 68888888532   244556788999999999999999999999988765 667788889999999999999999999


Q ss_pred             CceEEEE
Q 012712          448 CSILLFE  454 (458)
Q Consensus       448 ~~i~~w~  454 (458)
                      |.+++|.
T Consensus       501 gllKLWk  507 (508)
T KOG0275|consen  501 GLLKLWK  507 (508)
T ss_pred             chhhhcC
Confidence            9999995

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-35  Score=235.03  Aligned_cols=289  Identities=20%  Similarity=0.279  Sum_probs=233.9

Q ss_pred             eeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      ..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++...+ ..|.+.|..+++.    ...+++++.|.+|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~----~~~~~tvgdDKtv  131 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVT----QTSFFTVGDDKTV  131 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEec----ccceEEecCCcce
Confidence            4556789999999999999977 78999999999999999999998888 8999999999995    3789999999999


Q ss_pred             EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      +.|.+... ...+  +. -...+..+.-+..+ ..+++++.  .|.|||.+...+++.+..          ....+.++.
T Consensus       132 K~wk~~~~-p~~t--il-g~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smsw----------G~Dti~svk  194 (433)
T KOG0268|consen  132 KQWKIDGP-PLHT--IL-GKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSW----------GADSISSVK  194 (433)
T ss_pred             eeeeccCC-ccee--ee-cccccccccccccc-ccccccCc--eeeecccccCCccceeec----------CCCceeEEe
Confidence            99998653 2222  22 23455666666655 67888886  489999998888888775          334689999


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEc
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQ  289 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~  289 (458)
                      |+|-...+|++|+.|+.|.+||+++...+....+                ...-+.++|+|++-.++++++| .++.||+
T Consensus       195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~----------------~mRTN~IswnPeafnF~~a~ED~nlY~~Dm  258 (433)
T KOG0268|consen  195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL----------------TMRTNTICWNPEAFNFVAANEDHNLYTYDM  258 (433)
T ss_pred             cCCCcchheeeeccCCceEEEecccCCccceeee----------------eccccceecCccccceeeccccccceehhh
Confidence            9998778899999999999999999874433111                2355789999988788888876 7999999


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                      +.-                                     ..+...+.+|.+.  |.++.| +|.|+-+++|+.|.+|+|
T Consensus       259 R~l-------------------------------------~~p~~v~~dhvsA--V~dVdf-sptG~EfvsgsyDksIRI  298 (433)
T KOG0268|consen  259 RNL-------------------------------------SRPLNVHKDHVSA--VMDVDF-SPTGQEFVSGSYDKSIRI  298 (433)
T ss_pred             hhh-------------------------------------cccchhhccccee--EEEecc-CCCcchhccccccceEEE
Confidence            864                                     3456777888886  999999 999999999999999999


Q ss_pred             EEecCCeEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          370 WKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       370 wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      |....+.....+.. --..|.++.||.|.+++++||+|+.|++|.....+
T Consensus       299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            99987654433321 12469999999999999999999999999876543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-34  Score=215.21  Aligned_cols=282  Identities=16%  Similarity=0.233  Sum_probs=221.8

Q ss_pred             EEEEEecC-CCEEEEec-------CCCeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           65 NTVSFNTD-GDILISGS-------DDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        65 ~~~~~s~~-~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      .++.|||- .++||.+.       ..|.+.|-++.....+.... -.-...+..++|++. ..+.+++++.||.+++||.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEecc
Confidence            47889982 23444332       25789999986444333321 235678999999983 5677889999999999997


Q ss_pred             ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      ..... +...++.|..+|.++.|++..+..+++++.|++|++|+...++.+.++..          +...|+..+|+|..
T Consensus        91 ~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g----------h~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   91 TMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG----------HNSCIYQAAFSPHI  159 (311)
T ss_pred             CCCCc-chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC----------CccEEEEEecCCCC
Confidence            55443 33458999999999999998878899999999999999998888887764          55579999999998


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP  295 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~  295 (458)
                      ++++++++.|+++++||++....                                    .                    
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk------------------------------------~--------------------  183 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGK------------------------------------F--------------------  183 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCc------------------------------------e--------------------
Confidence            99999999999999999875310                                    0                    


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                                                            ..+..|..  .+.++.|..-+.+.|++|+.|+.|+.||+...
T Consensus       184 --------------------------------------~~i~ah~~--Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  184 --------------------------------------MSIEAHNS--EILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             --------------------------------------eEEEeccc--eeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence                                                  01223332  26777773346678999999999999999764


Q ss_pred             -eEEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcccc--cccccccccEEEEEEecCC-cEEEeeecCCce
Q 012712          376 -ELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADR--ATLPTNIEQVCFSIYSADY-WWSKSQNFSCSI  450 (458)
Q Consensus       376 -~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i  450 (458)
                       .++.++.+|.-.|..+.|||.. ..||+++.|-+++|||.+.+.-  .+...|.+-+..+.||+-. .++|+.+.|+.+
T Consensus       224 r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l  303 (311)
T KOG0277|consen  224 RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL  303 (311)
T ss_pred             cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccce
Confidence             5788899999999999999975 4889999999999999985532  3556677779999999854 999999999999


Q ss_pred             EEEE
Q 012712          451 LLFE  454 (458)
Q Consensus       451 ~~w~  454 (458)
                      +||+
T Consensus       304 ~Vw~  307 (311)
T KOG0277|consen  304 YVWN  307 (311)
T ss_pred             eeec
Confidence            9997

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3.2e-34  Score=223.11  Aligned_cols=299  Identities=12%  Similarity=0.195  Sum_probs=227.9

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC-----------------cceeeeeccCCCcceeEEEEccCCC
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-----------------ERVKLSFHSGHNDNVFQAKIMPFTD  117 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~  117 (458)
                      ..+..|++++++.+|+|||.++|||+.|..|+|.|++.                 +.++.+.+-.|..+|+++.|+|  .
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP--r  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP--R  183 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc--h
Confidence            45678999999999999999999999999999999872                 1133344468999999999999  9


Q ss_pred             CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712          118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR  197 (458)
Q Consensus       118 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  197 (458)
                      ...|++++.|++|+++|+................+|.++.|+|.| .+|+.|..-..+++||+++-++...-..      
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanP------  256 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANP------  256 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCc------
Confidence            999999999999999999765443322233355789999999999 6788888889999999998876433321      


Q ss_pred             CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc-ccceeEEEeCCCCcEE
Q 012712          198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELL  276 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l  276 (458)
                       ...+...|+++.+++. +++.++++.||.|++||--+++.              ...+...| ...|.+..|..+|+++
T Consensus       257 -d~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rC--------------v~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  257 -DDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRC--------------VRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             -ccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHH--------------HHHHHhhcCCceeeeEEEccCCeEE
Confidence             1126678999999997 78999999999999999887763              33344434 4579999999999999


Q ss_pred             EEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712          277 VSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC  355 (458)
Q Consensus       277 ~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~  355 (458)
                      .+.+.+ .+++|.+.++.....+.+.....                              -..|     -+...| ....
T Consensus       321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tg------------------------------rq~~-----rtqAvF-NhtE  364 (430)
T KOG0640|consen  321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTG------------------------------RQKH-----RTQAVF-NHTE  364 (430)
T ss_pred             eecCCcceeeeeeecCCceEEEEecCCccc------------------------------chhh-----hhhhhh-cCcc
Confidence            988855 79999999865433332110000                              0000     111222 5555


Q ss_pred             cEEEEecC-CCeEEEEEecCCeEEEEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          356 EYVVSGSD-CGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       356 ~~l~~~~~-dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      .|++.-.+ .+.+.-||..++..+..+ .+|++.+..+.-||.+.-+.+|+.|-.+|+|--
T Consensus       365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            56655433 367889999888776655 479999999999999999999999999999953

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-32  Score=239.39  Aligned_cols=401  Identities=14%  Similarity=0.149  Sum_probs=296.8

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccc---------------cc------cccccccccccceEEe------eeeeEeecC
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLS---------------TR------NFALRRRASEDLVLRL------GIYAKLDKH   60 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~---------------~~------~~~~~~~~~~~~~~~~------~~~~~~~~h   60 (458)
                      +-|..|+++..++.+.||+..+++..               ..      ....++.++.++...+      +.+.+++++
T Consensus       122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~  201 (910)
T KOG1539|consen  122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF  201 (910)
T ss_pred             eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEeccc
Confidence            45778899999999999999874211               00      1122666777776666      788999999


Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeE-EEEEcCCCcEEEeeccccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERG  139 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~  139 (458)
                      ...|+++.-+|--..+|.|..+|+|.+++++.++.+..+.. ..+.|++++|..  ||+. +++++..|.+.+||++..+
T Consensus       202 ~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~-d~g~VtslSFrt--DG~p~las~~~~G~m~~wDLe~kk  278 (910)
T KOG1539|consen  202 FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ-DWGRVTSLSFRT--DGNPLLASGRSNGDMAFWDLEKKK  278 (910)
T ss_pred             ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc-cccceeEEEecc--CCCeeEEeccCCceEEEEEcCCCe
Confidence            99999999999889999999999999999999999999832 259999999998  8865 5566667999999998765


Q ss_pred             ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccc-eeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      ... .....|.+.+..+.|.|.. .++++++.|+.+++|=..++.-.. .++.     +.|  |..+..++.|...++..
T Consensus       279 l~~-v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~-----R~G--Hs~Pp~~irfy~~~g~~  349 (910)
T KOG1539|consen  279 LIN-VTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRS-----RGG--HSAPPSCIRFYGSQGHF  349 (910)
T ss_pred             eee-eeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheee-----ccC--CCCCchheeeeccCcEE
Confidence            544 3356788999999999988 589999999999988665544322 2221     223  55578999999666899


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCC-CCC--CcCCCccccccccceeEEEeCCCC-----cEEEEecCC-cEEEEEc
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQ-PAD--YFCPPNLIGDEQVGITGLAFSDQS-----ELLVSYNDE-FIYLFTQ  289 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~~-~i~i~~~  289 (458)
                      +.+++.|++++.+++......+...... +..  .........-.-.+|..+++....     ..+++.-+. .++.|+.
T Consensus       350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~  429 (910)
T KOG1539|consen  350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF  429 (910)
T ss_pred             EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence            9999999999999887654333221100 000  000000111123466677665432     233333343 6999998


Q ss_pred             cCCCCC-CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          290 DMGLGP-NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       290 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                      .+...- ..+                                 ....++.  ....+++++. ++.|++.+.|...|.|-
T Consensus       430 ~n~~~G~~~L---------------------------------~~~~~~~--~~~~~~av~v-s~CGNF~~IG~S~G~Id  473 (910)
T KOG1539|consen  430 RNKTSGRHVL---------------------------------DPKRFKK--DDINATAVCV-SFCGNFVFIGYSKGTID  473 (910)
T ss_pred             cCcccccEEe---------------------------------cCccccc--cCcceEEEEE-eccCceEEEeccCCeEE
Confidence            874320 000                                 0111111  2224888988 99999999999999999


Q ss_pred             EEEecCCeEEEEe---ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc---------------------------
Q 012712          369 IWKKKGGELIRVI---EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD---------------------------  418 (458)
Q Consensus       369 iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~---------------------------  418 (458)
                      +|++++|-....+   ..|.++|++++...-++.+++++.+|.+++|+.....                           
T Consensus       474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence            9999999888888   5899999999998889999999999999999887532                           


Q ss_pred             ---------------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          419 ---------------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       419 ---------------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                                     ...+.+|..+|++++|||||+||++++.|++|++||..
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP  606 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence                           02345788999999999999999999999999999974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9e-34  Score=214.30  Aligned_cols=284  Identities=17%  Similarity=0.227  Sum_probs=223.8

Q ss_pred             CCCCCCC-CCeEEEe-------eCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-
Q 012712            3 DASNNNN-NKRARTS-------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-   73 (458)
Q Consensus         3 ~~~~~~~-~~~l~~~-------~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-   73 (458)
                      +|.|||- ..+||.+       ...|.+.|-++..++-+                  ...+.+. -.+.+..++|++.. 
T Consensus        13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi------------------~e~~s~d-~~D~LfdV~Wse~~e   73 (311)
T KOG0277|consen   13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI------------------QECQSYD-TEDGLFDVAWSENHE   73 (311)
T ss_pred             eeEecccccchhheeehhhcccccCceEEEEecCCCCCe------------------EEEEeee-cccceeEeeecCCCc
Confidence            4567775 3444443       24688889888744433                  2233343 45789999999964 


Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccce
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA  153 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v  153 (458)
                      +.+++++.||.++|||+..........+.|..+|.++.|++. ....+++++.|++|++|+...+..+.+  +.+|...|
T Consensus        74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~T--f~gh~~~I  150 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQT--FNGHNSCI  150 (311)
T ss_pred             ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEe--ecCCccEE
Confidence            678899999999999976554433344899999999999984 667788889999999999988888776  99999999


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      ...+|+|..++++++++.|+.+++||++.......+..          +..++.|+.|+.-+.+++++|+.|+.|+.||+
T Consensus       151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a----------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDi  220 (311)
T KOG0277|consen  151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA----------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDI  220 (311)
T ss_pred             EEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe----------ccceeEeecccccCCcEEEecCCCceEEEEeh
Confidence            99999999999999999999999999987654444543          44579999999988899999999999999999


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      ++.+              .|.....+|.-.|+.+.|||.. .+|++++-| ++++||...+                   
T Consensus       221 r~~r--------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-------------------  267 (311)
T KOG0277|consen  221 RNLR--------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-------------------  267 (311)
T ss_pred             hhcc--------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc-------------------
Confidence            9876              2344567889999999999975 588888866 8999998753                   


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEe
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~  372 (458)
                                        ...+.+...|..  .+..+.| ++ +..++|+.+.|..++||+.
T Consensus       268 ------------------ds~~e~~~~HtE--Fv~g~Dw-s~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  268 ------------------DSAIETVDHHTE--FVCGLDW-SLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ------------------hhhhhhhhccce--EEecccc-ccccCceeeecccccceeeecc
Confidence                              233445555555  5788888 44 6679999999999999984

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.7e-32  Score=227.11  Aligned_cols=355  Identities=17%  Similarity=0.216  Sum_probs=269.7

Q ss_pred             CCCC-CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEecCCCEEEEecCCC
Q 012712            6 NNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDDR   83 (458)
Q Consensus         6 ~~~~-~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~   83 (458)
                      |.|. ..++++++ .|.+..|+.+++.+.++                  ...+++++ ..|.|++|.++|+ ++||..+|
T Consensus       208 FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~------------------~~~fek~ekk~Vl~v~F~engd-viTgDS~G  267 (626)
T KOG2106|consen  208 FHPTDPNLIITCG-KGHLYFWTLRGGSLVKR------------------QGIFEKREKKFVLCVTFLENGD-VITGDSGG  267 (626)
T ss_pred             eccCCCcEEEEeC-CceEEEEEccCCceEEE------------------eeccccccceEEEEEEEcCCCC-EEeecCCc
Confidence            4455 45556655 78899999998877644                  33455443 6799999999997 67999999


Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--e--------------------
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--V--------------------  141 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~--------------------  141 (458)
                      .|.||+..+.+..++.. .|.+.|.+++...  +|. |++|+.|..|..||-.-.+.  .                    
T Consensus       268 ~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr--~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~  343 (626)
T KOG2106|consen  268 NILIWSKGTNRISKQVH-AHDGGVFSLCMLR--DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL  343 (626)
T ss_pred             eEEEEeCCCceEEeEee-ecCCceEEEEEec--Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence            99999998888777775 9999999999997  775 55599999999998321110  0                    


Q ss_pred             ----------------eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          142 ----------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       142 ----------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                                      ......+|......++.+|+. .++++++.|+.+++|+  ..++.....           ...+
T Consensus       344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~k~~wt~~-----------~~d~  409 (626)
T KOG2106|consen  344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DHKLEWTKI-----------IEDP  409 (626)
T ss_pred             EeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--CCceeEEEE-----------ecCc
Confidence                            011234588889999999998 6899999999999999  333333322           3346


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcE
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI  284 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i  284 (458)
                      +.|+.|+|. + .++.|...|...+.|.++..+.               ..... ..++++++|+|+|.+||.++ ++.|
T Consensus       410 ~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv---------------~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  410 AECADFHPS-G-VVAVGTATGRWFVLDTETQDLV---------------TIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI  471 (626)
T ss_pred             eeEeeccCc-c-eEEEeeccceEEEEecccceeE---------------EEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence            899999998 5 9999999999999999885432               22222 67899999999999999999 5579


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      ++|.+....                                     ........+.. ..|+.+.| |+|+++|.+-+-|
T Consensus       472 yiy~Vs~~g-------------------------------------~~y~r~~k~~g-s~ithLDw-S~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  472 YIYRVSANG-------------------------------------RKYSRVGKCSG-SPITHLDW-SSDSQFLVSNSGD  512 (626)
T ss_pred             EEEEECCCC-------------------------------------cEEEEeeeecC-ceeEEeee-cCCCceEEeccCc
Confidence            999987642                                     22223332333 46999999 9999999999999


Q ss_pred             CeEEEEEecCCeEEEEe------------------ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc----ccccc
Q 012712          365 GRIFIWKKKGGELIRVI------------------EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA----DRATL  422 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~------------------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~----~~~~~  422 (458)
                      -.|..|.....+.....                  ..+...|..++-+.+.+++|+|.+.|.|++|...-.    .....
T Consensus       513 ~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~  592 (626)
T KOG2106|consen  513 YEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEY  592 (626)
T ss_pred             eEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceee
Confidence            99999954322211111                  124455777788888999999999999999986533    33467


Q ss_pred             ccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          423 PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       423 ~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .+|.+.|++++|..+...|.+.+.|.+|..|+.
T Consensus       593 ~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  593 GGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            788899999999999888888779999999986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.3e-33  Score=216.49  Aligned_cols=276  Identities=14%  Similarity=0.207  Sum_probs=220.9

Q ss_pred             cCCCceEEEEEec-CCCEEEEecCCCeEEEEECCC-cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712           59 KHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL  136 (458)
Q Consensus        59 ~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~  136 (458)
                      .-++.|.+|+||| ...+++.+|.|++||+|+++. +.........|.++|.+++|+.  ||..+++|+.|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeeccCCceEEEEcc
Confidence            4568899999999 556777899999999999987 4554455578999999999999  99999999999999999999


Q ss_pred             cccceeeeeccccccceEEEEEcCCCC-eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      +++...   +..|.++|..+.|-+... ..|++|+.|.+|+.||++...++..+..+           ..++++..-.  
T Consensus       103 S~Q~~~---v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-----------eRvYa~Dv~~--  166 (347)
T KOG0647|consen  103 SGQVSQ---VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-----------ERVYAADVLY--  166 (347)
T ss_pred             CCCeee---eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-----------ceeeehhccC--
Confidence            985433   678999999999987652 47899999999999999999888887743           3577776653  


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG  294 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~  294 (458)
                       .+++++..++.|.+|++++.....             +.....-+-.+++++..++....+.|+ +|.+.+..++.+..
T Consensus       167 -pm~vVata~r~i~vynL~n~~te~-------------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~  232 (347)
T KOG0647|consen  167 -PMAVVATAERHIAVYNLENPPTEF-------------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP  232 (347)
T ss_pred             -ceeEEEecCCcEEEEEcCCCcchh-------------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence             478888899999999998754221             112222345788999988887777777 88888888876432


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc-------eeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                      ..                                    -..|+.|..       -..|++++| +|.-..|++++.||++
T Consensus       233 ~~------------------------------------nFtFkCHR~~~~~~~~VYaVNsi~F-hP~hgtlvTaGsDGtf  275 (347)
T KOG0647|consen  233 KD------------------------------------NFTFKCHRSTNSVNDDVYAVNSIAF-HPVHGTLVTAGSDGTF  275 (347)
T ss_pred             cC------------------------------------ceeEEEeccCCCCCCceEEecceEe-ecccceEEEecCCceE
Confidence            21                                    123333331       234889998 9999999999999999


Q ss_pred             EEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712          368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS  403 (458)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  403 (458)
                      .+||-.....+.+.+.|..+|++.+|+.+|.++|.+
T Consensus       276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            999998888888989999999999999999998865

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-33  Score=218.53  Aligned_cols=294  Identities=15%  Similarity=0.176  Sum_probs=237.9

Q ss_pred             eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc------cc----------ceeeeeccccccceEEEEEcCCC
Q 012712           99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE------RG----------GVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~------~~----------~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      ++..|+.++.+.+|+|  ||.++++|+.|..|++.|++.      .+          ....+.+..|..+|+++.|+|..
T Consensus       107 ylt~HK~~cR~aafs~--DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSP--DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EEeecccceeeeeeCC--CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            3478999999999999  999999999999999999861      11          12234577899999999999998


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  242 (458)
                       .+|++++.|++|+++|.......+-++...        ...+|.+++|+|. |.++++|.....+++||+++.+.-.  
T Consensus       185 -~ILiS~srD~tvKlFDfsK~saKrA~K~~q--------d~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~Qcfv--  252 (430)
T KOG0640|consen  185 -TILISGSRDNTVKLFDFSKTSAKRAFKVFQ--------DTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFV--  252 (430)
T ss_pred             -heEEeccCCCeEEEEecccHHHHHHHHHhh--------ccceeeeEeecCC-CceEEEecCCCceeEEeccceeEee--
Confidence             799999999999999998765544433221        4457999999997 7899999999999999999876321  


Q ss_pred             cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                +...-..|.+.|+++.+++.|++.++++ ||.|++||--+                              
T Consensus       253 ----------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS------------------------------  292 (430)
T KOG0640|consen  253 ----------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS------------------------------  292 (430)
T ss_pred             ----------ecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc------------------------------
Confidence                      1234456789999999999999999999 66899999655                              


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCC-----ceeeEEEecCC
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-----HVVNCIEPHPH  396 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~  396 (458)
                              .+++..+....+...|.+..| ..+|+|+++.+.|..+++|.+.+++.+.++.+..     .--+...|+..
T Consensus       293 --------~rCv~t~~~AH~gsevcSa~F-tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht  363 (430)
T KOG0640|consen  293 --------NRCVRTIGNAHGGSEVCSAVF-TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT  363 (430)
T ss_pred             --------HHHHHHHHhhcCCceeeeEEE-ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence                    455666654444446888888 9999999999999999999999999999887541     12355667777


Q ss_pred             CCeEEEeec-CCcEEEecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          397 STVLASSGI-ESDIKILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       397 ~~~l~s~~~-d~~i~iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ..+++.-.+ .+.+.-||..+....  ...+|.+.+..+.-||.+.-+.+++.|-.+++|--
T Consensus       364 EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  364 EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             cceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            777766543 578899999988665  44789999999999999999999999999999953

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=8e-33  Score=246.47  Aligned_cols=271  Identities=21%  Similarity=0.338  Sum_probs=231.1

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW   88 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw   88 (458)
                      ....+++++.|++|++||..++..+..                    .+.||.+.|.+++|..-+.+|++|+.|.++++|
T Consensus       217 ~~~~~~~~s~~~tl~~~~~~~~~~i~~--------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW  276 (537)
T KOG0274|consen  217 HDGFFKSGSDDSTLHLWDLNNGYLILT--------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW  276 (537)
T ss_pred             ecCeEEecCCCceeEEeecccceEEEe--------------------eccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence            366789999999999999998887632                    589999999999998778899999999999999


Q ss_pred             ECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEE
Q 012712           89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT  168 (458)
Q Consensus        89 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  168 (458)
                      |..+|++...+ .+|.+.|.++...    ...+++|+.|.+|++|++.++..+..  +.+|.++|+++..+  + .++++
T Consensus       277 d~~sg~C~~~l-~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~--~-~~lvs  346 (537)
T KOG0274|consen  277 DCSTGECTHSL-QGHTSSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLD--E-PLLVS  346 (537)
T ss_pred             ecCCCcEEEEe-cCCCceEEEEEcc----CceEeeccCCceEEEEeccCcceEEE--eccccccEEEEEec--C-CEEEE
Confidence            99999999988 6999999999884    46888899999999999998888766  67799999999998  3 57999


Q ss_pred             ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712          169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      |+.|++|++||+.+++++..+..          |...|.++.+.+.  ..+++|+.|++|++||+++..           
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~g----------H~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-----------  403 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLSG----------HTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-----------  403 (537)
T ss_pred             EecCceEEEEEhhhceeeeeecC----------CcceEEEEEecCc--ceEEeeeeccceEeecCCchh-----------
Confidence            99999999999999999888864          5568999988763  699999999999999998751           


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD  328 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (458)
                                                                                                      
T Consensus       404 --------------------------------------------------------------------------------  403 (537)
T KOG0274|consen  404 --------------------------------------------------------------------------------  403 (537)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec-CCceeeEEEecCCCCeEEEeecCC
Q 012712          329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIES  407 (458)
Q Consensus       329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~  407 (458)
                        +++..+.+|..-  +..+.   ..+++|++++.|++|++||.+++++++++.+ |...|..+++.  ...+++++.|+
T Consensus       404 --~c~~tl~~h~~~--v~~l~---~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~  474 (537)
T KOG0274|consen  404 --KCIHTLQGHTSL--VSSLL---LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG  474 (537)
T ss_pred             --hhhhhhcCCccc--ccccc---cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC
Confidence              122334444442  34443   3678999999999999999999999999998 67889988886  46788899999


Q ss_pred             cEEEecCCcccccc
Q 012712          408 DIKILTPNAADRAT  421 (458)
Q Consensus       408 ~i~iw~~~~~~~~~  421 (458)
                      .+++||+.+++...
T Consensus       475 ~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  475 SVKLWDLRSGTLIR  488 (537)
T ss_pred             eeEEEecccCchhh
Confidence            99999999987653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.6e-31  Score=225.35  Aligned_cols=404  Identities=12%  Similarity=0.130  Sum_probs=283.0

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEecCCCEEEEecC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~   81 (458)
                      .++|+.+.+.||.+-.||.|.||++..+-..                    ...+.++. +.|.+++|++ +..|.+.+.
T Consensus        30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~--------------------~~vi~g~~drsIE~L~W~e-~~RLFS~g~   88 (691)
T KOG2048|consen   30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL--------------------EPVIHGPEDRSIESLAWAE-GGRLFSSGL   88 (691)
T ss_pred             EEEEeccCCceeeeccCCcEEEEccCCCcee--------------------eEEEecCCCCceeeEEEcc-CCeEEeecC
Confidence            5678899999999999999999999965443                    23566664 6899999995 556888899


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      +|.|.-||+.+++..... ....+.|++++.+|  .+..++.|+.||.+..++...+.......+...++.+.++.|+|+
T Consensus        89 sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~  165 (691)
T KOG2048|consen   89 SGSITEWDLHTLKQKYNI-DSNGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT  165 (691)
T ss_pred             CceEEEEecccCceeEEe-cCCCcceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence            999999999999998877 67788999999999  899999999999888888877776666667777899999999999


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                      + ..+++|+.||.|++||...+..............++  ...-|.++.|-.+  ..+++|..-|+|.+||...+.+.+.
T Consensus       166 ~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~--~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  166 G-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR--EPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             c-cEEEecccCceEEEEEcCCCceEEEeeecccccccC--CceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhh
Confidence            9 678999999999999999988766332211111111  2335778888765  5899999999999999998875433


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCC------CCCCCcccccccc--cc
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP------PPSSPVSTRSEAS--EM  312 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~------~~~~~~~~~~~~~--~~  312 (458)
                                     ...|...|.+++..+++..+.+++ ++.+..|...+....+.      ...+.........  .+
T Consensus       241 ---------------~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~  305 (691)
T KOG2048|consen  241 ---------------HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALI  305 (691)
T ss_pred             ---------------hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEE
Confidence                           334788999999999977777666 77888887776643111      1111111100000  00


Q ss_pred             CC-----------------CCcc---------cc--------CCC---------CCCc------ccccCc-eeecCccce
Q 012712          313 GS-----------------DHTS---------AA--------SPS---------TANT------DVRIAP-QVYKGHRNC  342 (458)
Q Consensus       313 ~~-----------------~~~~---------~~--------~~~---------~~~~------~~~~~~-~~~~~~~~~  342 (458)
                      +.                 ++..         +.        ...         .+..      ...... -..+.++  
T Consensus       306 sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~--  383 (691)
T KOG2048|consen  306 SGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKE--  383 (691)
T ss_pred             ecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcc--
Confidence            00                 0000         00        000         0000      000011 1112222  


Q ss_pred             eeeeEEEEecCCCcEEEEecCCCeEEEEEecC------------------------------------------------
Q 012712          343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------------------------------------------------  374 (458)
Q Consensus       343 ~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------------------------------------------------  374 (458)
                       .|.+.+. ||+|++++.+.- .+++||.+..                                                
T Consensus       384 -nIs~~ai-SPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~  460 (691)
T KOG2048|consen  384 -NISCAAI-SPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET  460 (691)
T ss_pred             -ceeeecc-CCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence             3777777 999999998762 2333443321                                                


Q ss_pred             C--eEEEEee--cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc-cccccEEEEEEecCC-cEEEeeecCC
Q 012712          375 G--ELIRVIE--ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-TNIEQVCFSIYSADY-WWSKSQNFSC  448 (458)
Q Consensus       375 ~--~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~v~~~~~s~d~-~~l~s~~~d~  448 (458)
                      .  +.+..+.  +-...|..+..||+|++||+.+.+|.|.+|++++.+...+. .-...+++++|+|.. ..|+.+..|+
T Consensus       461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~n  540 (691)
T KOG2048|consen  461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNN  540 (691)
T ss_pred             cchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCC
Confidence            0  0000000  12245889999999999999999999999999998776554 455779999999554 8888889999


Q ss_pred             ceEEEEE
Q 012712          449 SILLFEW  455 (458)
Q Consensus       449 ~i~~w~~  455 (458)
                      ++.-||.
T Consensus       541 Qv~efdi  547 (691)
T KOG2048|consen  541 QVFEFDI  547 (691)
T ss_pred             eEEEEec
Confidence            9988886

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.2e-34  Score=225.27  Aligned_cols=271  Identities=20%  Similarity=0.315  Sum_probs=220.7

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEEC
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW   90 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~   90 (458)
                      ..+++|+.||.|+|||+...++.                     .+++.|.+.|..|++..  ..+++++.|.+|+.|.+
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~---------------------~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECI---------------------RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhh---------------------heeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            66999999999999999976665                     45999999999999986  67889999999999997


Q ss_pred             CCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712           91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG  170 (458)
Q Consensus        91 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  170 (458)
                      +. .+..++  .....+..+.-+.  .++.++|+|.  .|.|||.....++..  +.--.+.|.++.|+|....+|++++
T Consensus       137 ~~-~p~~ti--lg~s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~s--mswG~Dti~svkfNpvETsILas~~  207 (433)
T KOG0268|consen  137 DG-PPLHTI--LGKSVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSS--MSWGADSISSVKFNPVETSILASCA  207 (433)
T ss_pred             cC-Ccceee--ecccccccccccc--ccccccccCc--eeeecccccCCccce--eecCCCceeEEecCCCcchheeeec
Confidence            75 455555  2345677777776  7788999986  589999987777665  4445678999999999988999999


Q ss_pred             CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC
Q 012712          171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY  250 (458)
Q Consensus       171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  250 (458)
                      .|+.|.+||+++..++....           ....-+.++|+|. ...|++|++|..++.||++..+             
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi-----------~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~-------------  262 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVI-----------LTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLS-------------  262 (433)
T ss_pred             cCCceEEEecccCCccceee-----------eeccccceecCcc-ccceeeccccccceehhhhhhc-------------
Confidence            99999999999999887765           3335688999994 8899999999999999999875             


Q ss_pred             cCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712          251 FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV  329 (458)
Q Consensus       251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (458)
                       .+.....+|...|..+.|+|.|+-+++|+ |.+|+||..+.+.....                                
T Consensus       263 -~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi--------------------------------  309 (433)
T KOG0268|consen  263 -RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI--------------------------------  309 (433)
T ss_pred             -ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh--------------------------------
Confidence             34566778889999999999999999999 45899999887532211                                


Q ss_pred             ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE
Q 012712          330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR  379 (458)
Q Consensus       330 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  379 (458)
                            +. ......|.++.| |.|.+|+++|++|+.|++|.....+.+.
T Consensus       310 ------Yh-tkRMq~V~~Vk~-S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  310 ------YH-TKRMQHVFCVKY-SMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             ------hh-HhhhheeeEEEE-eccccEEEecCCCcceeeeecchhhhcC
Confidence                  11 111224899999 9999999999999999999986554443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.7e-32  Score=211.53  Aligned_cols=275  Identities=18%  Similarity=0.226  Sum_probs=218.8

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      -...|++|.|+|.+..|+.++.||.+++||+...+....+  .|..++.+++|.   +...+++|+.||.|+.+|+.++.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFA---DESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeecc---CCceEEEeccCceEEEEEecCCc
Confidence            3678999999999999999999999999999988766665  689999999998   56789999999999999999887


Q ss_pred             ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      ...   +..|..++.++.+.+.. ..+++|+.|++|++||.+.......+.           ....|.++...   ++.|
T Consensus        87 ~~~---igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d-----------~~kkVy~~~v~---g~~L  148 (323)
T KOG1036|consen   87 EDQ---IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFD-----------QGKKVYCMDVS---GNRL  148 (323)
T ss_pred             cee---eccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccc-----------cCceEEEEecc---CCEE
Confidence            654   67799999999999876 679999999999999999855554443           33368888876   4689


Q ss_pred             EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCC
Q 012712          220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~  298 (458)
                      ++|+.+..+.+||+++.....             ......-+..++++++.|++.-.++++ +|.+.+=.++.....   
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~-------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~---  212 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPF-------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA---  212 (323)
T ss_pred             EEeecCceEEEEEcccccchh-------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH---
Confidence            999999999999999876321             111223356789999999877666666 887666544432100   


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc-------ceeeeeEEEEecCCCcEEEEecCCCeEEEEE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-------NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK  371 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd  371 (458)
                                                     ......|+.|.       -..+|++++| +|-.+.||+|+.||.|.+||
T Consensus       213 -------------------------------~skkyaFkCHr~~~~~~~~~yPVNai~F-hp~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  213 -------------------------------QSKKYAFKCHRLSEKDTEIIYPVNAIAF-HPIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             -------------------------------hhhceeEEeeecccCCceEEEEeceeEe-ccccceEEecCCCceEEEcc
Confidence                                           11122333332       2235899999 99999999999999999999


Q ss_pred             ecCCeEEEEeecCCceeeEEEecCCCCeEEEeec
Q 012712          372 KKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI  405 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  405 (458)
                      +.+.+.+..+......|.+++|+.||..||+++.
T Consensus       261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9999999999888788999999999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=5.3e-32  Score=219.99  Aligned_cols=283  Identities=15%  Similarity=0.261  Sum_probs=238.9

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV  141 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  141 (458)
                      ..|.++...|....++||+.|..+.++|...++.+..+ .||...|+.+.|+|  +...+++++.|-.|++|........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHK--DLDTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEecc--chhheeecCCcceEEeeccccccCc
Confidence            56888888888788999999999999999988887777 89999999999999  9999999999999999999877655


Q ss_pred             eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      ..  ...|..+|+.+..+|.| .+|++++.|++..+.|++++..........        ....+++.+|+|| |.+|.+
T Consensus       297 ~~--~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~--------s~v~~ts~~fHpD-gLifgt  364 (506)
T KOG0289|consen  297 TS--SRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDET--------SDVEYTSAAFHPD-GLIFGT  364 (506)
T ss_pred             cc--cccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeecc--------ccceeEEeeEcCC-ceEEec
Confidence            44  77899999999999999 689999999999999999998776654210        3346899999998 799999


Q ss_pred             ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCC
Q 012712          222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPS  300 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~  300 (458)
                      |..||.|++||+.+...               ...+.+|.++|..++|+.+|-+|++++++ .|++||++..+.      
T Consensus       365 gt~d~~vkiwdlks~~~---------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n------  423 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTN---------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN------  423 (506)
T ss_pred             cCCCceEEEEEcCCccc---------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc------
Confidence            99999999999998753               23455689999999999999999999977 599999987432      


Q ss_pred             CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe--cCCeEE
Q 012712          301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELI  378 (458)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~  378 (458)
                                                      .+++.-.... .+.++.| ++.|++|+.++.|=+|++++-  .++.++
T Consensus       424 --------------------------------~kt~~l~~~~-~v~s~~f-D~SGt~L~~~g~~l~Vy~~~k~~k~W~~~  469 (506)
T KOG0289|consen  424 --------------------------------FKTIQLDEKK-EVNSLSF-DQSGTYLGIAGSDLQVYICKKKTKSWTEI  469 (506)
T ss_pred             --------------------------------cceeeccccc-cceeEEE-cCCCCeEEeecceeEEEEEecccccceee
Confidence                                            2333322222 3788998 999999999988877777763  356778


Q ss_pred             EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      ..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus       470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            888889989999999999999999999999998864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.1e-32  Score=247.20  Aligned_cols=293  Identities=13%  Similarity=0.181  Sum_probs=228.6

Q ss_pred             CCCceEEEEEecCCCEEEEec--CCCeEEEEECCCc-----------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcC
Q 012712           60 HRGCVNTVSFNTDGDILISGS--DDRRVILWDWKTE-----------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA  126 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  126 (458)
                      ++..|.++..+|||..+|||+  .|+.++||+.+.-           .........|.+.|+|+.|+|  ||++||+|+.
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~--dG~~lAsGSD   89 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP--DGSYLASGSD   89 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC--CCCeEeeccC
Confidence            456799999999999999999  8999999986421           111222367999999999999  9999999999


Q ss_pred             CCcEEEeecccc----------c------ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceee
Q 012712          127 DGQVRHAQILER----------G------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT  190 (458)
Q Consensus       127 dg~i~vw~~~~~----------~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  190 (458)
                      |+.|.+|+....          .      ......+.+|...|..++|+|++ .+|++++.|++|.+||.++.+....+.
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeee
Confidence            999999998730          0      01234577899999999999998 799999999999999999998777776


Q ss_pred             ecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC
Q 012712          191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS  270 (458)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  270 (458)
                      .          |...|..+.|+|- |++|++-+.|++|++|++.+....+.               ..+           
T Consensus       169 ~----------H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~---------------It~-----------  211 (942)
T KOG0973|consen  169 G----------HQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKS---------------ITK-----------  211 (942)
T ss_pred             c----------ccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEe---------------ecc-----------
Confidence            4          5557899999998 79999999999999999765332111               000           


Q ss_pred             CCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712          271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF  350 (458)
Q Consensus       271 ~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  350 (458)
                                                                                      .+........+..+.|
T Consensus       212 ----------------------------------------------------------------pf~~~~~~T~f~RlSW  227 (942)
T KOG0973|consen  212 ----------------------------------------------------------------PFEESPLTTFFLRLSW  227 (942)
T ss_pred             ----------------------------------------------------------------chhhCCCcceeeeccc
Confidence                                                                            0000001113566777


Q ss_pred             ecCCCcEEEEecC----CCeEEEEEecCCeEEEEeecCCceeeEEEecCC-----CC------------eEEEeecCCcE
Q 012712          351 FGPKCEYVVSGSD----CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH-----ST------------VLASSGIESDI  409 (458)
Q Consensus       351 ~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~s~~~d~~i  409 (458)
                       ||||++|++...    -.++.|.+-.+.+.-..|-+|.+++.+++|+|.     .+            .+|+|+.|++|
T Consensus       228 -SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl  306 (942)
T KOG0973|consen  228 -SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL  306 (942)
T ss_pred             -CCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence             888888876532    246888888888888899999999999999982     11            67899999999


Q ss_pred             EEecCCcccccccccc--cccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712          410 KILTPNAADRATLPTN--IEQVCFSIYSADYWWSKSQNFSCSILLFEWLV  457 (458)
Q Consensus       410 ~iw~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~  457 (458)
                      -||.....+++.+..+  ...|..++|+|||..|+.++.||+|.+..|-+
T Consensus       307 SVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  307 SVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             EEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            9999876665543332  34599999999999999999999999998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-32  Score=231.28  Aligned_cols=271  Identities=19%  Similarity=0.263  Sum_probs=227.3

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      ...||+|. ...|.+|+..+|+...                     ....+.+.|+++.|+++|.+||+|..+|.|.|||
T Consensus       188 ~n~laVal-g~~vylW~~~s~~v~~---------------------l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD  245 (484)
T KOG0305|consen  188 ANVLAVAL-GQSVYLWSASSGSVTE---------------------LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWD  245 (484)
T ss_pred             CCeEEEEe-cceEEEEecCCCceEE---------------------eEecCCCceEEEEECCCCCEEEEeecCCeEEEEe
Confidence            34567666 6689999999887441                     2333489999999999999999999999999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC  169 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  169 (458)
                      ..+.+.+..+...|...|-+++|.    +..+.+|+.++.|..+|++..+.... .+.+|...|..++|++++ .++++|
T Consensus       246 ~~~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~-~~lASG  319 (484)
T KOG0305|consen  246 VKEQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDG-NQLASG  319 (484)
T ss_pred             hhhccccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCC-CeeccC
Confidence            999888887743399999999995    57899999999999999998877655 588999999999999999 789999


Q ss_pred             cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCCCccCCCccCCCC
Q 012712          170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDFGQP  247 (458)
Q Consensus       170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~  247 (458)
                      +.|+.+.|||....++...+..          |...|.+++|+|-...+||+|+  .|+.|++||..+++.+...     
T Consensus       320 gnDN~~~Iwd~~~~~p~~~~~~----------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----  384 (484)
T KOG0305|consen  320 GNDNVVFIWDGLSPEPKFTFTE----------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----  384 (484)
T ss_pred             CCccceEeccCCCccccEEEec----------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----
Confidence            9999999999976666655543          6668999999998788999975  7899999999988754321     


Q ss_pred             CCCcCCCccccccccceeEEEeCCCCcEEEEec---CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                                 .....|..|.|++..+-|+++.   ++.|.||+..+                                 
T Consensus       385 -----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps---------------------------------  420 (484)
T KOG0305|consen  385 -----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS---------------------------------  420 (484)
T ss_pred             -----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---------------------------------
Confidence                       1356899999999986666543   45799999887                                 


Q ss_pred             CCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                           ...+..+.+|...  |..+++ +|||..+++|+.|.++++|++-..
T Consensus       421 -----~~~~~~l~gH~~R--Vl~la~-SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  421 -----MKLVAELLGHTSR--VLYLAL-SPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             -----cceeeeecCCcce--eEEEEE-CCCCCEEEEecccCcEEeccccCC
Confidence                 4567888899985  999998 999999999999999999998664

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-33  Score=244.45  Aligned_cols=263  Identities=18%  Similarity=0.276  Sum_probs=202.6

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccc------------------------------cccccccccccce------
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTR------------------------------NFALRRRASEDLV------   48 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~------------------------------~~~~~~~~~~~~~------   48 (458)
                      -||+||++||+|++|+.||||.+...+...-                              .............      
T Consensus       274 KFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~  353 (712)
T KOG0283|consen  274 KFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLK  353 (712)
T ss_pred             EeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCc
Confidence            3899999999999999999999985221110                              0000000000000      


Q ss_pred             ---EEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           49 ---LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        49 ---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                         ..-++++.+.||.+.|..|.||.+ ++|++++.|.+|+||++...+++..|  .|..-|+|++|+|. |.+++++|+
T Consensus       354 ~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPv-DDryFiSGS  429 (712)
T KOG0283|consen  354 AFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPV-DDRYFISGS  429 (712)
T ss_pred             cccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEeccc-CCCcEeecc
Confidence               111788899999999999999975 58999999999999999999999998  79999999999995 889999999


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      -||.++||++...+.+.   ...-..-|++++|.|+| +..+.|+.+|.+++|+.+..+....+..........  ....
T Consensus       430 LD~KvRiWsI~d~~Vv~---W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~--~~~r  503 (712)
T KOG0283|consen  430 LDGKVRLWSISDKKVVD---WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK--QGKR  503 (712)
T ss_pred             cccceEEeecCcCeeEe---ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc--cCce
Confidence            99999999997765543   34444789999999999 788999999999999999888776665443222111  1227


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc-ccceeEEEeCCCCcEEEEecCC-c
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELLVSYNDE-F  283 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-~  283 (458)
                      |+.+.|.|.....+++.+.|..|+|||.+..++...+              ...+ ...-....|+.||++|+++++| .
T Consensus       504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf--------------KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~  569 (712)
T KOG0283|consen  504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF--------------KGFRNTSSQISASFSSDGKHIVSASEDSW  569 (712)
T ss_pred             eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh--------------cccccCCcceeeeEccCCCEEEEeecCce
Confidence            9999999976777888999999999999877654331              1111 1234567899999999999977 6


Q ss_pred             EEEEEccC
Q 012712          284 IYLFTQDM  291 (458)
Q Consensus       284 i~i~~~~~  291 (458)
                      |++|+...
T Consensus       570 VYiW~~~~  577 (712)
T KOG0283|consen  570 VYIWKNDS  577 (712)
T ss_pred             EEEEeCCC
Confidence            99999855

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.3e-31  Score=237.05  Aligned_cols=275  Identities=16%  Similarity=0.154  Sum_probs=198.2

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEecCC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDD   82 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d   82 (458)
                      ..+++++..+++++.+.....|+...|..+..       -...+. .......+.+|.+.|.+++|+| ++++|++|+.|
T Consensus        26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~-------~~~~G~-~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLK-------HTDYGK-LASNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             ccccCCCCCcEeECCceEEEEEecCCceEEee-------cccccc-CCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            34567877788888899899998875432211       000000 0011234789999999999999 88999999999


Q ss_pred             CeEEEEECCCcc-------eeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccceeeeeccccccceE
Q 012712           83 RRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH  154 (458)
Q Consensus        83 ~~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~  154 (458)
                      ++|++||+.++.       .+..+ .+|...|.+++|+|  ++ ++|++++.|+.|++||+.+++....  +..|...|.
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P--~~~~iLaSgs~DgtVrIWDl~tg~~~~~--l~~h~~~V~  172 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHP--SAMNVLASAGADMVVNVWDVERGKAVEV--IKCHSDQIT  172 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCc--CCCCEEEEEeCCCEEEEEECCCCeEEEE--EcCCCCceE
Confidence            999999997653       23344 78999999999999  75 6899999999999999998776544  778999999


Q ss_pred             EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec----CCCeEEE
Q 012712          155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----SDEYTRL  230 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~i~i  230 (458)
                      +++|+|++ .+|++++.|+.|++||+++++.+..+..+.         ......+.|.+++ ..+++++    .|+.|++
T Consensus       173 sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~Vkl  241 (493)
T PTZ00421        173 SLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------SAKSQRCLWAKRK-DLIITLGCSKSQQRQIML  241 (493)
T ss_pred             EEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCC---------CCcceEEEEcCCC-CeEEEEecCCCCCCeEEE
Confidence            99999999 789999999999999999988765554321         1123466788874 4555443    4788999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      ||+++...                        ++...                    +.                     
T Consensus       242 WDlr~~~~------------------------p~~~~--------------------~~---------------------  256 (493)
T PTZ00421        242 WDTRKMAS------------------------PYSTV--------------------DL---------------------  256 (493)
T ss_pred             EeCCCCCC------------------------ceeEe--------------------cc---------------------
Confidence            99875421                        00000                    00                     


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeec-CCcee
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEA-DRHVV  388 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v  388 (458)
                                                  +... .+....| ++++++|++++ .|+.|++||+.+++++..... +..++
T Consensus       257 ----------------------------d~~~-~~~~~~~-d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~  306 (493)
T PTZ00421        257 ----------------------------DQSS-ALFIPFF-DEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH  306 (493)
T ss_pred             ----------------------------CCCC-ceEEEEE-cCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence                                        0000 1233344 99999999887 599999999999988776543 44567


Q ss_pred             eEEEecCCC
Q 012712          389 NCIEPHPHS  397 (458)
Q Consensus       389 ~~~~~s~~~  397 (458)
                      ..++|.|..
T Consensus       307 ~g~~~~pk~  315 (493)
T PTZ00421        307 KGLCMMPKW  315 (493)
T ss_pred             cceEecccc
Confidence            888888853

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-32  Score=224.47  Aligned_cols=278  Identities=18%  Similarity=0.239  Sum_probs=222.1

Q ss_pred             CCCCCCCCCCCe-EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe
Q 012712            1 MDDASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG   79 (458)
Q Consensus         1 ~~~~~~~~~~~~-l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   79 (458)
                      |+++.|+|..++ +|+.+ .-.+.||+..+....+.                     +...+..|.++.|-.||++||.|
T Consensus        29 vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~---------------------~srFk~~v~s~~fR~DG~LlaaG   86 (487)
T KOG0310|consen   29 VSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT---------------------FSRFKDVVYSVDFRSDGRLLAAG   86 (487)
T ss_pred             ceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh---------------------HHhhccceeEEEeecCCeEEEcc
Confidence            456778887666 55555 45699999997665533                     44567889999999999999999


Q ss_pred             cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      +..|.|+|||..+...+..+ .+|+.++..+.|+|. ++..+++|+.|+.+++||+.+...  ...+.+|++.|.+.+|+
T Consensus        87 D~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~  162 (487)
T KOG0310|consen   87 DESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDIS  162 (487)
T ss_pred             CCcCcEEEeccccHHHHHHH-hhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccc
Confidence            99999999996664454444 899999999999993 677788999999999999988774  34589999999999999


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      |..++++++|+.||.|++||++.. ..+..+.           +..+|..+.+-|. +.++++++.+ .|++||+-++..
T Consensus       163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-----------hg~pVe~vl~lps-gs~iasAgGn-~vkVWDl~~G~q  229 (487)
T KOG0310|consen  163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-----------HGCPVESVLALPS-GSLIASAGGN-SVKVWDLTTGGQ  229 (487)
T ss_pred             cCCCeEEEecCCCceEEEEEeccCCceeEEec-----------CCCceeeEEEcCC-CCEEEEcCCC-eEEEEEecCCce
Confidence            998889999999999999999987 4444443           6668999999996 6788888754 799999996642


Q ss_pred             CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712          239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT  317 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (458)
                      .              ......|...|+|+.+..++..|++++ |+.+++||+.+                          
T Consensus       230 l--------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~--------------------------  269 (487)
T KOG0310|consen  230 L--------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN--------------------------  269 (487)
T ss_pred             e--------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccc--------------------------
Confidence            1              223344888999999999999999998 77999999765                          


Q ss_pred             cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                                  .+.+..+.   -+..|.+++. +|+++.++.|..||.+.+-+..
T Consensus       270 ------------~Kvv~s~~---~~~pvLsiav-s~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  270 ------------YKVVHSWK---YPGPVLSIAV-SPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             ------------eEEEEeee---cccceeeEEe-cCCCceEEEecccceeeeehhh
Confidence                        22333332   2224899998 9999999999999988776543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=9.9e-31  Score=216.72  Aligned_cols=363  Identities=17%  Similarity=0.218  Sum_probs=262.0

Q ss_pred             CCCCCCCeEEEeeCCC--------cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCC
Q 012712            5 SNNNNNKRARTSVDKA--------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGD   74 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~--------~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~   74 (458)
                      ..+|+.-++++|-.-|        .|||||..+-                     ..++.+..-...|.|++||+  .|.
T Consensus       111 ~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L---------------------~TL~V~g~f~~GV~~vaFsk~~~G~  169 (626)
T KOG2106|consen  111 AVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL---------------------STLHVIGFFDRGVTCVAFSKINGGS  169 (626)
T ss_pred             eecCCceeeccCcccccCCCcCCCeeeecccccc---------------------eeeeeeccccccceeeeecccCCCc
Confidence            4578887888765454        4899997743                     33355666778899999998  345


Q ss_pred             EEEEe--cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee-ccc-cc
Q 012712           75 ILISG--SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL-LGK-HQ  150 (458)
Q Consensus        75 ~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~-~~~-~~  150 (458)
                      +|+..  +.+..+.+||...+...... ...++.|....|+|. +.+++++++. |.+.+|+.+.+....+.- +.. ..
T Consensus       170 ~l~~vD~s~~h~lSVWdWqk~~~~~~v-k~sne~v~~a~FHPt-d~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ek  246 (626)
T KOG2106|consen  170 LLCAVDDSNPHMLSVWDWQKKAKLGPV-KTSNEVVFLATFHPT-DPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREK  246 (626)
T ss_pred             eEEEecCCCccccchhhchhhhccCcc-eeccceEEEEEeccC-CCcEEEEeCC-ceEEEEEccCCceEEEeeccccccc
Confidence            55554  44568899999988776665 456678899999993 5666777765 899999998876544322 222 22


Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      ..|.|++|.+++.  +++|..+|.|.+|+..+.+..+....          |.+.|.+++.-.+ + .|++|+.|+.|..
T Consensus       247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~a----------H~ggv~~L~~lr~-G-tllSGgKDRki~~  312 (626)
T KOG2106|consen  247 KFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVHA----------HDGGVFSLCMLRD-G-TLLSGGKDRKIIL  312 (626)
T ss_pred             eEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEeee----------cCCceEEEEEecC-c-cEeecCccceEEe
Confidence            6799999999994  79999999999999876655444332          6778999999887 4 5666999999999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCC----------------------------ccccccccceeEEEeCCCCcEEEEec-C
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPP----------------------------NLIGDEQVGITGLAFSDQSELLVSYN-D  281 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~-~  281 (458)
                      ||-. .+.....+++..  .-.+.                            ....+|......++..|+...+++++ +
T Consensus       313 Wd~~-y~k~r~~elPe~--~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd  389 (626)
T KOG2106|consen  313 WDDN-YRKLRETELPEQ--FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD  389 (626)
T ss_pred             cccc-ccccccccCchh--cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence            9933 222222222110  00000                            01223445667788888887777777 5


Q ss_pred             CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712          282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG  361 (458)
Q Consensus       282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~  361 (458)
                      ..+++|+ ..                                       ++.-... ...  .+.++.| +|.| .+|.|
T Consensus       390 k~v~lW~-~~---------------------------------------k~~wt~~-~~d--~~~~~~f-hpsg-~va~G  424 (626)
T KOG2106|consen  390 KHVRLWN-DH---------------------------------------KLEWTKI-IED--PAECADF-HPSG-VVAVG  424 (626)
T ss_pred             ceEEEcc-CC---------------------------------------ceeEEEE-ecC--ceeEeec-cCcc-eEEEe
Confidence            5799998 21                                       1111111 111  2678888 9999 99999


Q ss_pred             cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc--cc-ccccccEEEEEEecCC
Q 012712          362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA--TL-PTNIEQVCFSIYSADY  438 (458)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~--~~-~~~~~~v~~~~~s~d~  438 (458)
                      ...|...+.|.++...+..-.. ..+++.++|+|+|.+||.|+.|+.|+||.++.+...  .. ..+...|+.+.||+|+
T Consensus       425 t~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds  503 (626)
T KOG2106|consen  425 TATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS  503 (626)
T ss_pred             eccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC
Confidence            9999999999998666655554 889999999999999999999999999999865332  22 2233679999999999


Q ss_pred             cEEEeeecCCceEEEE
Q 012712          439 WWSKSQNFSCSILLFE  454 (458)
Q Consensus       439 ~~l~s~~~d~~i~~w~  454 (458)
                      +++.+.+.|-.|.+|.
T Consensus       504 ~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  504 QFLVSNSGDYEILYWK  519 (626)
T ss_pred             ceEEeccCceEEEEEc
Confidence            9999999999999994

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-31  Score=206.65  Aligned_cols=297  Identities=19%  Similarity=0.318  Sum_probs=224.7

Q ss_pred             eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC
Q 012712           12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK   91 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~   91 (458)
                      ++++|+....|.-+++.-..  .       ...+.....+.+...+..|.++|++++.+  +.++|+||.|-+|+|||+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~--~-------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~   71 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEP--K-------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR   71 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCc--c-------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEecc
Confidence            47888888877666665211  0       01112234456677788999999999996  8999999999999999999


Q ss_pred             CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC
Q 012712           92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE  171 (458)
Q Consensus        92 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  171 (458)
                      +...+..+ ..|.+.|+++.|.+....+.|++|+.||.|.+|+...-..+..  +++|.+.|+.++.+|.+ .+.++.+.
T Consensus        72 k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s--lK~H~~~Vt~lsiHPS~-KLALsVg~  147 (362)
T KOG0294|consen   72 KRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS--LKAHKGQVTDLSIHPSG-KLALSVGG  147 (362)
T ss_pred             chhhhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee--ecccccccceeEecCCC-ceEEEEcC
Confidence            88887777 5799999999999822234899999999999999876655544  89999999999999999 78899999


Q ss_pred             CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCc
Q 012712          172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF  251 (458)
Q Consensus       172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  251 (458)
                      |+.+++||+-.++.........           ....+.|+|. |.+|+.+..+ .|-+|.+.+-.......        
T Consensus       148 D~~lr~WNLV~Gr~a~v~~L~~-----------~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~--------  206 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVLNLKN-----------KATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIE--------  206 (362)
T ss_pred             CceeeeehhhcCccceeeccCC-----------cceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhh--------
Confidence            9999999999988766655332           2355999998 6778777766 58999988765432211        


Q ss_pred             CCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712          252 CPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI  331 (458)
Q Consensus       252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (458)
                              ....+.++.|...+.+++.+.++.|.+||.+.                                      ..
T Consensus       207 --------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds--------------------------------------~~  240 (362)
T KOG0294|consen  207 --------NPKRILCATFLDGSELLVGGDNEWISLKDTDS--------------------------------------DT  240 (362)
T ss_pred             --------ccccceeeeecCCceEEEecCCceEEEeccCC--------------------------------------Cc
Confidence                    12457788887777666666667899999886                                      45


Q ss_pred             CceeecCccceeeeeEEEE-ecCCCcEEEEecCCCeEEEEEecCC-----eEEEEeecCCceeeEEEe
Q 012712          332 APQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKGG-----ELIRVIEADRHVVNCIEP  393 (458)
Q Consensus       332 ~~~~~~~~~~~~~i~~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~  393 (458)
                      +...+.+|.+.  |.++.+ -.|++.||++++.||.|++||++..     +++..+.. ...++|+..
T Consensus       241 ~~~~~~AH~~R--VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  241 PLTEFLAHENR--VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             cceeeecchhh--eeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            67788899885  777773 4678899999999999999999765     34444443 334555543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-31  Score=205.06  Aligned_cols=282  Identities=15%  Similarity=0.191  Sum_probs=223.4

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC--CCeEEEE
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE--DGLVQHF  178 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iw  178 (458)
                      ......|+++.|++  +|..+++++.|..+++||..+++....  +..+...+..++|.... +.++.++.  |.+|+..
T Consensus        11 ~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~t--i~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen   11 RETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVKT--INSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             ccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceeeE--eecccccccEEEEecCC-ceEEEccCCCCCceEEE
Confidence            34577899999999  999999999999999999999887766  66666778888887666 34555554  8899999


Q ss_pred             eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712          179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      ++.+.+.++.+..          |...|++++.+|- +..+++++.|++|++||++..+..+.+               .
T Consensus        86 sl~dNkylRYF~G----------H~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l---------------~  139 (311)
T KOG1446|consen   86 SLHDNKYLRYFPG----------HKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLL---------------N  139 (311)
T ss_pred             EeecCceEEEcCC----------CCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCceEE---------------e
Confidence            9999998888864          5558999999997 589999999999999999976532221               1


Q ss_pred             ccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712          259 DEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK  337 (458)
Q Consensus       259 ~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (458)
                        ...-..++|+|+|-++|++.+. .|++||++.-..                                    .+...+.
T Consensus       140 --~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk------------------------------------gPF~tf~  181 (311)
T KOG1446|consen  140 --LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK------------------------------------GPFTTFS  181 (311)
T ss_pred             --cCCCcceeECCCCcEEEEecCCCeEEEEEecccCC------------------------------------CCceeEc
Confidence              1233457899999999999866 899999987321                                    1112222


Q ss_pred             Cc-cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce---eeEEEecCCCCeEEEeecCCcEEEec
Q 012712          338 GH-RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV---VNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       338 ~~-~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      -. ........+.| ||||++|+.++..+.+++.|.-+|..+.++..+...   .....|+||++++++|+.||+|.+|+
T Consensus       182 i~~~~~~ew~~l~F-S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  182 ITDNDEAEWTDLEF-SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             cCCCCccceeeeEE-cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence            11 11224788898 999999999999999999999999999998877543   25778999999999999999999999


Q ss_pred             CCccccc-cccc-ccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          414 PNAADRA-TLPT-NIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       414 ~~~~~~~-~~~~-~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ++++... .+.+ +.+++.++.|+|.-..+++++  ..+.+|=
T Consensus       261 ~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~  301 (311)
T KOG1446|consen  261 LETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWL  301 (311)
T ss_pred             cCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEe
Confidence            9998765 4444 577899999999988887754  4677774

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-32  Score=213.09  Aligned_cols=308  Identities=15%  Similarity=0.211  Sum_probs=250.7

Q ss_pred             cccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC
Q 012712           38 ALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD  117 (458)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  117 (458)
                      +++++.-.++...+++++.+.||++.|..++.......+.+++.|.+.+||.++++.++..+ .+|.+.|+++.|++  .
T Consensus       125 srivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~--s  201 (481)
T KOG0300|consen  125 SRIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHN--S  201 (481)
T ss_pred             chheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEecc--c
Confidence            34666677777888999999999999999999887889999999999999999999999998 89999999999999  9


Q ss_pred             CeEEEEEcCCCcEEEeec------cccc--------------------------------ceeeeeccccccceEEEEEc
Q 012712          118 DRSIVTCAADGQVRHAQI------LERG--------------------------------GVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus       118 ~~~l~s~~~dg~i~vw~~------~~~~--------------------------------~~~~~~~~~~~~~v~~~~~~  159 (458)
                      +.++++++.|++-.||..      ..+.                                .++...+.+|.+.|.+..|.
T Consensus       202 ~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL  281 (481)
T KOG0300|consen  202 GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL  281 (481)
T ss_pred             cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh
Confidence            999999999999999972      1100                                01223467899999999999


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      ..+ ..+++++.|.+..+||+++++.+..+..          +....+.++-+|. .+++++.+.|.+.++||++..-  
T Consensus       282 ~gg-~Q~vTaSWDRTAnlwDVEtge~v~~LtG----------Hd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI--  347 (481)
T KOG0300|consen  282 AGG-QQMVTASWDRTANLWDVETGEVVNILTG----------HDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAI--  347 (481)
T ss_pred             cCc-ceeeeeeccccceeeeeccCceeccccC----------cchhccccccCCc-ceEEEEeccCceeEeccchhhc--
Confidence            888 6789999999999999999999888764          4446788888997 6899999999999999998431  


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS  318 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (458)
                                  .....+.+|...|++..|.-+.+ +++++++ +|++||+++.                          
T Consensus       348 ------------~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM--------------------------  388 (481)
T KOG0300|consen  348 ------------QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM--------------------------  388 (481)
T ss_pred             ------------ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc--------------------------
Confidence                        23457788999999999988764 6677766 8999999874                          


Q ss_pred             ccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe-----ecCCceeeEEEe
Q 012712          319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEP  393 (458)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~  393 (458)
                                 ..++.++....   .++.++. +..+..++.--++..|++||++ |..+..+     ++|..-|.+++|
T Consensus       389 -----------RsplATIRtdS---~~NRvav-s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW  452 (481)
T KOG0300|consen  389 -----------RSPLATIRTDS---PANRVAV-SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAW  452 (481)
T ss_pred             -----------cCcceeeecCC---ccceeEe-ecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeec
Confidence                       22333333322   3777887 8888899998889999999995 4444333     579999999999


Q ss_pred             cCCCC--eEEEeecCCcEEEecCCcc
Q 012712          394 HPHST--VLASSGIESDIKILTPNAA  417 (458)
Q Consensus       394 s~~~~--~l~s~~~d~~i~iw~~~~~  417 (458)
                      ..+-.  -|++++.|..+.-|++...
T Consensus       453 ~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  453 LEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cccCcccccccccccceeeeeEeccc
Confidence            86543  5889999999999988653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.7e-32  Score=247.82  Aligned_cols=313  Identities=17%  Similarity=0.251  Sum_probs=232.6

Q ss_pred             CCCCCCCCeEEEee--CCCcEEEEEccccccccccccccccccccceE-EeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            4 ASNNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVL-RLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         4 ~~~~~~~~~l~~~~--~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      +..+|++.+++||+  .|+.++||+.+.  +...        .++... --+.+.++..|.+.|+|+.|+|||++||+|+
T Consensus        19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~--vl~~--------~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   19 IDVHPDGVKFATGGQVLDGGIVIWSQDP--VLDE--------KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             EEecCCceeEecCCccccccceeecccc--ccch--------hhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            44689999999999  999999999872  1111        111111 1245667889999999999999999999999


Q ss_pred             CCCeEEEEECCC----------c--------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           81 DDRRVILWDWKT----------E--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        81 ~d~~i~iwd~~~----------~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      .|+.|.||....          |        +.... +.+|...|..++|+|  ++.+|++++.|++|.+|+..+.+.+.
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~-l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSI-LRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEE-EecCCCccceeccCC--CccEEEEecccceEEEEccccceeee
Confidence            999999999873          0        12333 478999999999999  99999999999999999999986555


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      .  +.+|...|..+.|.|-| ++|++-+.|++|++|++..-.....+..+.....    ....+..+.|+|| |.+|++.
T Consensus       166 v--l~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~----~~T~f~RlSWSPD-G~~las~  237 (942)
T KOG0973|consen  166 V--LRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP----LTTFFLRLSWSPD-GHHLASP  237 (942)
T ss_pred             e--eecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCC----CcceeeecccCCC-cCeecch
Confidence            4  89999999999999999 7899999999999999776555544432221111    2335789999998 7888876


Q ss_pred             c----CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712          223 G----SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       223 ~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~  298 (458)
                      .    .-..+.|.+-.+.+.               ...+-+|..++.+++|+|.             +|.-..       
T Consensus       238 nA~n~~~~~~~IieR~tWk~---------------~~~LvGH~~p~evvrFnP~-------------lfe~~~-------  282 (942)
T KOG0973|consen  238 NAVNGGKSTIAIIERGTWKV---------------DKDLVGHSAPVEVVRFNPK-------------LFERNN-------  282 (942)
T ss_pred             hhccCCcceeEEEecCCcee---------------eeeeecCCCceEEEEeChH-------------Hhcccc-------
Confidence            3    223466666544432               2234457789999999983             111100       


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC--cEEEEecCCCeEEEEEecCCe
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--EYVVSGSDCGRIFIWKKKGGE  376 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~  376 (458)
                                                        .   .|...          .++.  ..+|+|+.|++|-||.....+
T Consensus       283 ----------------------------------~---ng~~~----------~~~~~y~i~AvgSqDrSlSVW~T~~~R  315 (942)
T KOG0973|consen  283 ----------------------------------K---NGTST----------QPNCYYCIAAVGSQDRSLSVWNTALPR  315 (942)
T ss_pred             ----------------------------------c---cCCcc----------CCCcceEEEEEecCCccEEEEecCCCC
Confidence                                              0   00000          1111  257899999999999987777


Q ss_pred             EEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          377 LIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       377 ~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      ++..... ....|.+++|+|||..|..+|.||+|.+..++..+.
T Consensus       316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence            7765432 356799999999999999999999999999886543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.4e-33  Score=226.25  Aligned_cols=279  Identities=16%  Similarity=0.257  Sum_probs=226.6

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      .++-|-++...|+||+.|..|++|++..++.                   ..+.+|.|-.++|+++.|.++++.+++++.
T Consensus       179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------ELISTLAGSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             ceeEEccCcchhhhcchhhhhhhhhcccchh-------------------hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence            3455667777899999999999999995541                   234568889999999999999999999999


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      |+.+++|++...+...++ .+|++.|+++.|..  ....+++++.|.+|++||+....+..+. +  ....+..|+.++ 
T Consensus       240 d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~--~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l--~~S~cnDI~~~~-  312 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKL--SHSRVVSGSADRTIKLWDLQKAYCSKTV-L--PGSQCNDIVCSI-  312 (459)
T ss_pred             CCceeeeeccchhhhhhh-cccccceeeehhhc--cccceeeccccchhhhhhhhhhheeccc-c--ccccccceEecc-
Confidence            999999999999988877 89999999999997  6666999999999999999887665542 2  334566677663 


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                        ..++++-.|++|++||.++..+.....           ..+.|+++..+++ +..+++++.|.++.+.|+++.+....
T Consensus       313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~-----------~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~  378 (459)
T KOG0288|consen  313 --SDVISGHFDKKVRFWDIRSADKTRSVP-----------LGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQT  378 (459)
T ss_pred             --eeeeecccccceEEEeccCCceeeEee-----------cCcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEE
Confidence              568999999999999999998887776           3347999999997 78888889999999999999875443


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                      +.         ...+...  ...+.+.|||++.|+++|+ ++.++||++.+++                           
T Consensus       379 ~s---------A~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK---------------------------  420 (459)
T KOG0288|consen  379 FS---------AEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK---------------------------  420 (459)
T ss_pred             ee---------ccccccc--cccceeEECCCCceeeeccCCCcEEEEEccCce---------------------------
Confidence            21         1222222  3488999999999999999 6689999999853                           


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                                 +...+........|++++| +|.|.+|++++.++.+.+|
T Consensus       421 -----------lE~~l~~s~s~~aI~s~~W-~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  421 -----------LEKVLSLSTSNAAITSLSW-NPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -----------EEEEeccCCCCcceEEEEE-cCCCchhhcccCCcceEec
Confidence                       4444444443335999999 9999999999999999998

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.4e-31  Score=216.21  Aligned_cols=276  Identities=19%  Similarity=0.270  Sum_probs=227.2

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      +....++||+.|..+.++|...++.+.                     .++||...|+.+.|+|+...+++++.|..|+|
T Consensus       229 ~s~~~ilTGG~d~~av~~d~~s~q~l~---------------------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~v  287 (506)
T KOG0289|consen  229 PSSSKILTGGEDKTAVLFDKPSNQILA---------------------TLKGHTKKITSVKFHKDLDTVITASADEIIRV  287 (506)
T ss_pred             CCCCcceecCCCCceEEEecchhhhhh---------------------hccCcceEEEEEEeccchhheeecCCcceEEe
Confidence            335678999999999999999888774                     49999999999999999999999999999999


Q ss_pred             EECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEE
Q 012712           88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY  167 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  167 (458)
                      |........... ..|.++|+.+..+|  .|++|++++.||+..+.|++++..+....-....-.+++.+|+||| .+|.
T Consensus       288 ws~~~~s~~~~~-~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifg  363 (506)
T KOG0289|consen  288 WSVPLSSEPTSS-RPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFG  363 (506)
T ss_pred             eccccccCcccc-ccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEe
Confidence            998877665544 78999999999999  9999999999999999999999877653332233468999999999 8999


Q ss_pred             EecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCC
Q 012712          168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP  247 (458)
Q Consensus       168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  247 (458)
                      +|..||.|++||+..+.....|..          |.++|..++|+.+ |.++++++.|+.|++||+|..+....      
T Consensus       364 tgt~d~~vkiwdlks~~~~a~Fpg----------ht~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt------  426 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKSQTNVAKFPG----------HTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKT------  426 (506)
T ss_pred             ccCCCceEEEEEcCCccccccCCC----------CCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccce------
Confidence            999999999999999887766653          6678999999996 89999999999999999998774332      


Q ss_pred             CCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 012712          248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN  326 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (458)
                              +.......+.++.|.+.|++|+.++.+ .|++++-.+..                                 
T Consensus       427 --------~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~---------------------------------  465 (506)
T KOG0289|consen  427 --------IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS---------------------------------  465 (506)
T ss_pred             --------eeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc---------------------------------
Confidence                    222234479999999999999998655 56666644321                                 


Q ss_pred             cccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                         ...+..+..|.+.  .+++.| ..+.+++++++.|..++++.+
T Consensus       466 ---W~~~~~~~~~sg~--st~v~F-g~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  466 ---WTEIKELADHSGL--STGVRF-GEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ---ceeeehhhhcccc--cceeee-cccceEEeeccchhheEEeec
Confidence               3445556566643  677777 889999999999999888764

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-31  Score=228.43  Aligned_cols=275  Identities=18%  Similarity=0.257  Sum_probs=224.6

Q ss_pred             EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee
Q 012712           66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL  145 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  145 (458)
                      -+.|+ ..+.||.|.. ..|.+|+..++...... ..+...|+++.|++  +|.+|++|..+|.|.|||..+.+.+..  
T Consensus       182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~~--  254 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTRT--  254 (484)
T ss_pred             Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECC--CCCEEEEeecCCeEEEEehhhcccccc--
Confidence            35677 3456777654 57999999988854444 34489999999999  999999999999999999988877765  


Q ss_pred             ccc-cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          146 LGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       146 ~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      +.. |...|-+++|..   ..+.+|+.|+.|..+|++..+.....       ..+  |...|..+.|++| +.++|+|+.
T Consensus       255 ~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~--H~qeVCgLkws~d-~~~lASGgn  321 (484)
T KOG0305|consen  255 LRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVST-------LQG--HRQEVCGLKWSPD-GNQLASGGN  321 (484)
T ss_pred             ccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhh-------hhc--ccceeeeeEECCC-CCeeccCCC
Confidence            666 999999999994   57899999999999999988765441       112  5557999999998 799999999


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEec---CCcEEEEEccCCCCCCCCCC
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN---DEFIYLFTQDMGLGPNPPPS  300 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~---~~~i~i~~~~~~~~~~~~~~  300 (458)
                      |+.+.|||....+               +......|...|..++|+|- ..+||+|+   |..|++||..++.....   
T Consensus       322 DN~~~Iwd~~~~~---------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~---  383 (484)
T KOG0305|consen  322 DNVVFIWDGLSPE---------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS---  383 (484)
T ss_pred             ccceEeccCCCcc---------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc---
Confidence            9999999995543               34566778999999999995 56888876   44799999987533222   


Q ss_pred             CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE--ecCCCeEEEEEecCCeEE
Q 012712          301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~  378 (458)
                                                         ....   ..|.++.| ++..+-|++  |..++.|.||+..+.+++
T Consensus       384 -----------------------------------vdtg---sQVcsL~W-sk~~kEi~sthG~s~n~i~lw~~ps~~~~  424 (484)
T KOG0305|consen  384 -----------------------------------VDTG---SQVCSLIW-SKKYKELLSTHGYSENQITLWKYPSMKLV  424 (484)
T ss_pred             -----------------------------------cccC---CceeeEEE-cCCCCEEEEecCCCCCcEEEEecccccee
Confidence                                               2211   24899999 998876665  456789999999999999


Q ss_pred             EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      ..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus       425 ~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  425 AELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            999999999999999999999999999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.8e-31  Score=217.42  Aligned_cols=306  Identities=19%  Similarity=0.172  Sum_probs=227.2

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .++.+|+.++.++++.|++|.=|++.+|+......-.-..... .-..++..+  ++|...|.+++.|+||+|||+|+.|
T Consensus       147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~-~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d  223 (479)
T KOG0299|consen  147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS-HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRD  223 (479)
T ss_pred             EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh-ccCCCCccc--ccccceeEEEEEcCCCcEEEecCCC
Confidence            3568999999999999999999999999865321111000000 000111111  4899999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      ..|.||+.++.+.+..+ .+|.+.|.+++|-.  ....|++++.|+.|++|++.....+.+  +.+|.+.|..+....-+
T Consensus       224 ~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vet--lyGHqd~v~~IdaL~re  298 (479)
T KOG0299|consen  224 RHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVET--LYGHQDGVLGIDALSRE  298 (479)
T ss_pred             ceEEEecCcccchhhcc-cccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHH--HhCCccceeeechhccc
Confidence            99999999999998887 89999999999998  788999999999999999988777766  88999999999888776


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  242 (458)
                       ..+-+|+.|+++++|++..... ..+..          +.+.+.|++|-.+  ..|++|+.+|.|.+|++.+.+.+...
T Consensus       299 -R~vtVGgrDrT~rlwKi~eesq-lifrg----------~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  299 -RCVTVGGRDRTVRLWKIPEESQ-LIFRG----------GEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             -ceEEeccccceeEEEeccccce-eeeeC----------CCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEe
Confidence             5556666999999999943322 22221          4457899999865  68999999999999999988766554


Q ss_pred             cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                      ....++....   -...++..|++++..|...++++|+ ++.+++|.+..+..                           
T Consensus       365 ~~AHgv~~~~---~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r---------------------------  414 (479)
T KOG0299|consen  365 RLAHGVIPEL---DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR---------------------------  414 (479)
T ss_pred             eccccccCCc---cccccccceeeeEecccCceEEecCCCCceEEEEecCCcc---------------------------
Confidence            4433322110   0111235899999999999999999 67899999987632                           


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEE
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWK  371 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd  371 (458)
                                .+..+..-.-...|++++| +++|+++++| +....+--|-
T Consensus       415 ----------~i~~l~~ls~~GfVNsl~f-~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  415 ----------AINLLYSLSLVGFVNSLAF-SNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             ----------ccceeeecccccEEEEEEE-ccCCCEEEEecccccccceee
Confidence                      1222222222336999998 9999966654 4455554444

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.5e-31  Score=235.33  Aligned_cols=273  Identities=19%  Similarity=0.257  Sum_probs=234.4

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      |...+.+..|.  ..++++++.|++|++||..++..+..-+.+|.+.|.++++..  .+.+|++|+.|.++++||..+++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCCCc
Confidence            56788899988  557999999999999999999988884589999999999986  78999999999999999999998


Q ss_pred             ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      +...  +.+|...+.++...+   ..+++|+.|.+|++|+++++..+..+..          +..+|.++..+   +.++
T Consensus       283 C~~~--l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~----------h~~~V~~v~~~---~~~l  344 (537)
T KOG0274|consen  283 CTHS--LQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRG----------HTGPVNCVQLD---EPLL  344 (537)
T ss_pred             EEEE--ecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEecc----------ccccEEEEEec---CCEE
Confidence            8876  889999999998877   5688999999999999999998887764          45589999997   3599


Q ss_pred             EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCC
Q 012712          220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~  299 (458)
                      ++|+.|++|.+||+.+.+                                                              
T Consensus       345 vsgs~d~~v~VW~~~~~~--------------------------------------------------------------  362 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTGK--------------------------------------------------------------  362 (537)
T ss_pred             EEEecCceEEEEEhhhce--------------------------------------------------------------
Confidence            999999999999997543                                                              


Q ss_pred             CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-eEE
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELI  378 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~  378 (458)
                                                      +++.+.+|...  |.++.+ .+. ..+++|+.|++|++||+.+. +++
T Consensus       363 --------------------------------cl~sl~gH~~~--V~sl~~-~~~-~~~~Sgs~D~~IkvWdl~~~~~c~  406 (537)
T KOG0274|consen  363 --------------------------------CLKSLSGHTGR--VYSLIV-DSE-NRLLSGSLDTTIKVWDLRTKRKCI  406 (537)
T ss_pred             --------------------------------eeeeecCCcce--EEEEEe-cCc-ceEEeeeeccceEeecCCchhhhh
Confidence                                            45566777774  788876 444 89999999999999999999 999


Q ss_pred             EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc-c-ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-T-NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~-~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      .++.+|...+..+.+  .+++|++++.|++|++||..+++++... . |.+.|.++++.  ...+++++.||.+.+||+-
T Consensus       407 ~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  407 HTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             hhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence            999999998876665  6789999999999999999999887443 3 45778888877  5677788999999999863

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-31  Score=222.26  Aligned_cols=254  Identities=31%  Similarity=0.587  Sum_probs=191.5

Q ss_pred             ccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEE
Q 012712           43 ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV  122 (458)
Q Consensus        43 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  122 (458)
                      +......++.+.+.|.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+..+|...|.++.|-|..+.+.++
T Consensus        32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~  111 (758)
T KOG1310|consen   32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL  111 (758)
T ss_pred             cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence            44555667888899999999999999999999999999999999999998899999999999999999999988889999


Q ss_pred             EEcCCCcEEEeeccccc--------ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceee-ecc
Q 012712          123 TCAADGQVRHAQILERG--------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT-CRP  193 (458)
Q Consensus       123 s~~~dg~i~vw~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~  193 (458)
                      +|..|..|+++|+...+        ......+..|...|..++-.|++++.+.++++||+|+-+|++.......-. ++.
T Consensus       112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~  191 (758)
T KOG1310|consen  112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS  191 (758)
T ss_pred             eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence            99999999999997522        223344778999999999999999999999999999999999754321111 100


Q ss_pred             cCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc----CCCccCCCC-----CCCcCCCcccccc----
Q 012712          194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW----DGSTDFGQP-----ADYFCPPNLIGDE----  260 (458)
Q Consensus       194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~----  260 (458)
                      .. ..-+..-....|+..+|.++.+|++|+.|-..++||.+....    .......+|     +.++++..+....    
T Consensus       192 ~l-~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  192 IL-VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HH-HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            00 000002235789999999999999999999999999543221    111222233     4455555542111    


Q ss_pred             --ccceeEEEeCCCCc-EEEEecCCcEEEEEccCCCCCCC
Q 012712          261 --QVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMGLGPNP  297 (458)
Q Consensus       261 --~~~i~~~~~~~~~~-~l~~~~~~~i~i~~~~~~~~~~~  297 (458)
                        ...++-+.|+|+|. +|++-+.+.|+++|+..++...+
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence              12256788999986 55666677899999987764433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-30  Score=203.85  Aligned_cols=265  Identities=15%  Similarity=0.194  Sum_probs=211.5

Q ss_pred             EEEecCCCeEEEEECCCcc------------eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712           76 LISGSDDRRVILWDWKTER------------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET  143 (458)
Q Consensus        76 l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  143 (458)
                      +++|++...|.-+++.-..            ++..+ ..|.+.|++++.    ++.++|+|+.|-+|+|||+........
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~   78 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGI   78 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcc
Confidence            5667777666666654221            12233 679999999999    689999999999999999988877665


Q ss_pred             eeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          144 KLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                        +-.|.+.|+++.|.+.- ...|++|+.||.|.+|+...-.++..++.          +...|+.++.+|. +++.++.
T Consensus        79 --ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~----------H~~~Vt~lsiHPS-~KLALsV  145 (362)
T KOG0294|consen   79 --LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA----------HKGQVTDLSIHPS-GKLALSV  145 (362)
T ss_pred             --eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc----------cccccceeEecCC-CceEEEE
Confidence              77799999999999865 23689999999999999998877777764          4456999999998 7899999


Q ss_pred             cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712          223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      +.|+.++.||+-.++......+                ....+.+.|+|.|.+++....+.|-+|.+.+......     
T Consensus       146 g~D~~lr~WNLV~Gr~a~v~~L----------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~-----  204 (362)
T KOG0294|consen  146 GGDQVLRTWNLVRGRVAFVLNL----------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE-----  204 (362)
T ss_pred             cCCceeeeehhhcCccceeecc----------------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhh-----
Confidence            9999999999988874322111                2233459999999999999999999999887432211     


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE  382 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  382 (458)
                                                       +.   .+..+.++.|  -++.+|++|++|+.|.+||..+..+...+.
T Consensus       205 ---------------------------------i~---~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~  246 (362)
T KOG0294|consen  205 ---------------------------------IE---NPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFL  246 (362)
T ss_pred             ---------------------------------hh---ccccceeeee--cCCceEEEecCCceEEEeccCCCccceeee
Confidence                                             11   1123566666  367799999999999999999999999999


Q ss_pred             cCCceeeEEEe--cCCCCeEEEeecCCcEEEecCCcc
Q 012712          383 ADRHVVNCIEP--HPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       383 ~~~~~v~~~~~--s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      +|...|.++.+  .|++.+|+|+|.||.|++||++..
T Consensus       247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99999999984  577899999999999999999876

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-29  Score=186.82  Aligned_cols=298  Identities=15%  Similarity=0.254  Sum_probs=229.3

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC------cc--------eeeeeccCCCcceeEEEEccC
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT------ER--------VKLSFHSGHNDNVFQAKIMPF  115 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~------~~--------~~~~~~~~~~~~i~~~~~~~~  115 (458)
                      .++.+..+. ....|++++|+|.|.+.|.|+...+.+|-....      +.        ....-.+.|.+.|+|.+|+| 
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-   99 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-   99 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-
Confidence            445555555 567899999999999999999999998864321      11        11112256899999999999 


Q ss_pred             CCCeEEEEEcCCCcEEEeecccccce---eeeeccccccceEEEEEcCC---CCeEEEEec-CCCeEEEEeCCCCCccce
Q 012712          116 TDDRSIVTCAADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPG---SPHVFYTCG-EDGLVQHFDLRTGAATEL  188 (458)
Q Consensus       116 ~~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~  188 (458)
                       +|++|++|+.|.+|++..++.....   ....+..|.+.|..++|..+   +..+|++++ .|..|++-|..+++....
T Consensus       100 -~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  100 -CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             -ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence             9999999999999999877554322   12346779999999999643   335677665 467788888888877666


Q ss_pred             eeecccCCCCcceeecceEEE-EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEE
Q 012712          189 FTCRPIDDRRNYMTVVNLNAI-AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL  267 (458)
Q Consensus       189 ~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  267 (458)
                      +..          +.+.|.++ .|+   +.++++|+.|.+|++||++-...                         |+.+
T Consensus       179 ~sg----------htghilalyswn---~~m~~sgsqdktirfwdlrv~~~-------------------------v~~l  220 (350)
T KOG0641|consen  179 LSG----------HTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSC-------------------------VNTL  220 (350)
T ss_pred             ecC----------CcccEEEEEEec---CcEEEccCCCceEEEEeeeccce-------------------------eeec
Confidence            543          33345554 343   67999999999999999986431                         1111


Q ss_pred             E--eCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712          268 A--FSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV  345 (458)
Q Consensus       268 ~--~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  345 (458)
                      .  |...                                                                 +-+ ...|
T Consensus       221 ~~~~~~~-----------------------------------------------------------------gle-ssav  234 (350)
T KOG0641|consen  221 DNDFHDG-----------------------------------------------------------------GLE-SSAV  234 (350)
T ss_pred             cCcccCC-----------------------------------------------------------------Ccc-ccee
Confidence            0  0000                                                                 001 1137


Q ss_pred             eEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc-----c
Q 012712          346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-----A  420 (458)
Q Consensus       346 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~-----~  420 (458)
                      .+++. +|.|++|++|-.|....+||+..++.++.+..|...|.++.|+|...+|.+++.|..|++=|+.....     .
T Consensus       235 aav~v-dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  235 AAVAV-DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             EEEEE-CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence            88888 99999999999999999999999999999999999999999999999999999999999999986522     2


Q ss_pred             ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          421 TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       421 ~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .+..|...+..+.|.|..--+++.+.|.++.+|-+
T Consensus       314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             EEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            44678888999999999977889999999999975

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.5e-31  Score=220.85  Aligned_cols=303  Identities=12%  Similarity=0.109  Sum_probs=226.9

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce---eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEE
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH  177 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  177 (458)
                      .+|+..|.++++.|  .|..|++|+.|..|++||+......   ...........|+++.|++.+. .|++.+.....++
T Consensus       164 ~hgtk~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl  240 (641)
T KOG0772|consen  164 KHGTKIVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKL  240 (641)
T ss_pred             cCCceEEEEeeecC--CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeE
Confidence            67888999999999  9999999999999999999654321   1122344567899999999995 5555565677899


Q ss_pred             EeCCCCCccceeee----cccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712          178 FDLRTGAATELFTC----RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP  253 (458)
Q Consensus       178 wd~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  253 (458)
                      +|-...+.....+.    ......++  |...++|.+|+|++...|++++.||++++||+...+...+.        + .
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKG--Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV--------i-k  309 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKG--HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV--------I-K  309 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCC--ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE--------E-e
Confidence            98654443332221    11222344  55579999999999999999999999999999876532110        0 0


Q ss_pred             CccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                      .....+...+++.++|+|+|++||++. +|.|.+|+......                                   ...
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-----------------------------------~p~  354 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-----------------------------------RPV  354 (641)
T ss_pred             eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc-----------------------------------ccc
Confidence            112234567889999999999999988 66899999754221                                   223


Q ss_pred             ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-eEEEEeecC--CceeeEEEecCCCCeEEEeec----
Q 012712          333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEAD--RHVVNCIEPHPHSTVLASSGI----  405 (458)
Q Consensus       333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~----  405 (458)
                      ...-..|.....|+++.| |+||++|++-+.|+++++||+... +++.+..+-  .-+-+.++|||+.++|++|..    
T Consensus       355 ~~vk~AH~~g~~Itsi~F-S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~  433 (641)
T KOG0772|consen  355 MKVKDAHLPGQDITSISF-SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG  433 (641)
T ss_pred             eEeeeccCCCCceeEEEe-ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence            444557777667999999 999999999999999999999765 445444332  234678999999999999853    


Q ss_pred             --CCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712          406 --ESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       406 --d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                        .|++.+||..+-+.. .+.-....|..+.|+|.-+.+..++.||.+++|
T Consensus       434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence              578999998877654 444446679999999999999999999999886

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-31  Score=227.22  Aligned_cols=336  Identities=17%  Similarity=0.221  Sum_probs=254.9

Q ss_pred             cCCCceE---EEEEec-CCCEEEEecCCCeEEEEECCCcce------eeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           59 KHRGCVN---TVSFNT-DGDILISGSDDRRVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        59 ~h~~~v~---~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      .|...|.   ++..+. .+++|.|||.||.|++|++.....      ...+ ..|...|+.+...-  +++.|++++.|-
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~--~~~tlIS~SsDt   95 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCG--NGKTLISASSDT   95 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhc--CCCceEEecCCc
Confidence            3445555   455544 567899999999999999864332      3334 67999999999988  999999999999


Q ss_pred             cEEEeecccccceeeeeccccccceEEEEE-cCCCCeEEEEecCCCeEEEEeCCCCCc--cceeeecccCCCC-cceeec
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAI-EPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRR-NYMTVV  204 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~-~~~~~~  204 (458)
                      +|++|+...+.......+..|.+.|.|+++ .++. .++++|+-|+.|.+||++++..  +..+......... +  +..
T Consensus        96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG--~k~  172 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG--PKD  172 (735)
T ss_pred             eEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC--Ccc
Confidence            999999987753444458899999999999 5665 7899999999999999998833  3322222221111 2  455


Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF  283 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~  283 (458)
                      .+++++-++. +..|++|+.++.+++||.++.+.               .....+|...|..+..++||..+++++ |++
T Consensus       173 siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~k---------------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgt  236 (735)
T KOG0308|consen  173 SIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKK---------------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGT  236 (735)
T ss_pred             ceeeeecCCc-ceEEEecCcccceEEeccccccc---------------eeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence            7999999997 68999999999999999999863               223447899999999999999888877 668


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~  363 (458)
                      |++||+..                                      ..++.++..|...  +.++.. +|+-.++++|+.
T Consensus       237 IrlWdLgq--------------------------------------QrCl~T~~vH~e~--VWaL~~-~~sf~~vYsG~r  275 (735)
T KOG0308|consen  237 IRLWDLGQ--------------------------------------QRCLATYIVHKEG--VWALQS-SPSFTHVYSGGR  275 (735)
T ss_pred             EEeeeccc--------------------------------------cceeeeEEeccCc--eEEEee-CCCcceEEecCC
Confidence            99999987                                      6778888889886  888888 999999999999


Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccc---------------------
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL---------------------  422 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~---------------------  422 (458)
                      ||.|+.=|+.+......+-....+|..+..+.+.+-+-++..|+.|+-|.....-.+..                     
T Consensus       276 d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~t  355 (735)
T KOG0308|consen  276 DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNT  355 (735)
T ss_pred             CCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCC
Confidence            99999999988544333434556788887775555556677789999997653211100                     


Q ss_pred             ----ccccccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712          423 ----PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLV  457 (458)
Q Consensus       423 ----~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~  457 (458)
                          ......+...+.-.|.+.++|-...|.+.+||.+.
T Consensus       356 p~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~  394 (735)
T KOG0308|consen  356 PDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA  394 (735)
T ss_pred             CceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence                11111233444455778999999999999999874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-31  Score=198.96  Aligned_cols=253  Identities=19%  Similarity=0.209  Sum_probs=198.2

Q ss_pred             CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEE
Q 012712            1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILIS   78 (458)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s   78 (458)
                      |+|+...-.|++|||+++|++|||+.+..+..                  .+++.+|.||.++|..++|..  .|.+||+
T Consensus        14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS   75 (299)
T KOG1332|consen   14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------SKLLAELTGHSGPVWKVAWAHPKFGTILAS   75 (299)
T ss_pred             hhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------ceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence            45666667799999999999999999985432                  245678999999999999976  7899999


Q ss_pred             ecCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc-cceeeeeccccccceEEE
Q 012712           79 GSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLGKHQGRAHKL  156 (458)
Q Consensus        79 ~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~v~~~  156 (458)
                      ++.||.|.||.-++++-.+.. ...|...|++++|.|+.-|-.|+.++.||.|.+.++++. .....+....|.-.|+++
T Consensus        76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV  155 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV  155 (299)
T ss_pred             eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence            999999999998877532221 267999999999999877889999999999999999876 444445578899999999


Q ss_pred             EEcCC---C----------CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC---CcEEE
Q 012712          157 AIEPG---S----------PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN---ANLFA  220 (458)
Q Consensus       157 ~~~~~---~----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~  220 (458)
                      +|.|.   |          .+.|++|+.|..|++|+...++-+..-.      +++  |...|+.++|.|..   ...++
T Consensus       156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~------l~~--H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT------LEG--HKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh------hhh--cchhhhhhhhccccCCCceeeE
Confidence            99986   2          1459999999999999998874322111      122  55689999999973   25899


Q ss_pred             EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712          221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM  291 (458)
Q Consensus       221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~  291 (458)
                      +++.||++.||..+.....-            ...+.......+..+.|++.|.+|+.++ ++.+.+|.-+.
T Consensus       228 S~SqDg~viIwt~~~e~e~w------------k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPW------------KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EecCCCcEEEEEecCccCcc------------cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            99999999999887321111            1223333456799999999999998877 55799998654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.9e-30  Score=199.58  Aligned_cols=273  Identities=15%  Similarity=0.141  Sum_probs=207.4

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      ......|.+++|||. ...+++.++.||+||+|++........+....|.++|.+++|+.+| ..+++|+.|+.+++||+
T Consensus        24 ~pP~DsIS~l~FSP~-~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQ-ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             CCcccchheeEeccc-cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEc
Confidence            456788999999993 5566778899999999999875443335567899999999999999 67899999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCc--EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN--LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      .+++..+.-.           |..+|.++.|-+. ..  .|++|+.|.+|+.||.|....+..+++              
T Consensus       102 ~S~Q~~~v~~-----------Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--------------  155 (347)
T KOG0647|consen  102 ASGQVSQVAA-----------HDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--------------  155 (347)
T ss_pred             cCCCeeeeee-----------cccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeeec--------------
Confidence            9996655443           7778999999874 44  789999999999999998764433222              


Q ss_pred             ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712          259 DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK  337 (458)
Q Consensus       259 ~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (458)
                        ...+.++..  ...+++.+. +..|.+|+++++.....                                     ...
T Consensus       156 --PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k-------------------------------------~~~  194 (347)
T KOG0647|consen  156 --PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFK-------------------------------------RIE  194 (347)
T ss_pred             --cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhh-------------------------------------hhc
Confidence              123333322  233555555 56899999977432111                                     111


Q ss_pred             CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC--eEEEEeecCCc---------eeeEEEecCCCCeEEEeecC
Q 012712          338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG--ELIRVIEADRH---------VVNCIEPHPHSTVLASSGIE  406 (458)
Q Consensus       338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~d  406 (458)
                      ..- .-.+++++. -+|....+.|+-+|++.|..+..+  +.-.+++.|..         .|++++|+|.-..|+|+|.|
T Consensus       195 SpL-k~Q~R~va~-f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD  272 (347)
T KOG0647|consen  195 SPL-KWQTRCVAC-FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD  272 (347)
T ss_pred             Ccc-cceeeEEEE-EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCC
Confidence            111 113788887 567777799999999999999887  44456777762         48899999999999999999


Q ss_pred             CcEEEecCCccccc-ccccccccEEEEEEecCCcEEEee
Q 012712          407 SDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQ  444 (458)
Q Consensus       407 ~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~  444 (458)
                      |++.+||-+....+ ....|..+|++.+|+.+|.++|.+
T Consensus       273 Gtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  273 GTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            99999999877555 558899999999999999888754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-30  Score=210.95  Aligned_cols=296  Identities=19%  Similarity=0.233  Sum_probs=228.0

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeee----------------ec-cCCCcceeEEEEccCC
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLS----------------FH-SGHNDNVFQAKIMPFT  116 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------~~-~~~~~~i~~~~~~~~~  116 (458)
                      +..+..|.-+|.+++++|+.++.++++.+++|.=|++.++.....                .. ..|...+.+++.+|  
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~--  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS--  212 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence            456778999999999999999999999999999999987763210                11 26888999999999  


Q ss_pred             CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC
Q 012712          117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD  196 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  196 (458)
                      |+++|++|+.|..|.||+..+.+.+..  +.+|.+.|.+++|-..- +.+++++.|+.|++|+++....+.++..     
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyG-----  284 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYG-----  284 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhC-----
Confidence            999999999999999999999888776  89999999999998755 6789999999999999999888777654     


Q ss_pred             CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712          197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL  276 (458)
Q Consensus       197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  276 (458)
                           |...|..+.-... ...+-+|+.|+++++|++....                +.+..++.+.+.|++|-.+.. +
T Consensus       285 -----Hqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~ees----------------qlifrg~~~sidcv~~In~~H-f  341 (479)
T KOG0299|consen  285 -----HQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEES----------------QLIFRGGEGSIDCVAFINDEH-F  341 (479)
T ss_pred             -----Cccceeeechhcc-cceEEeccccceeEEEeccccc----------------eeeeeCCCCCeeeEEEecccc-e
Confidence                 4456888877665 5677777799999999995432                335556678999999987765 5


Q ss_pred             EEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712          277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC  355 (458)
Q Consensus       277 ~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~  355 (458)
                      ++|+ +|.|.+|++...+........                            ......+..-..+.+|++++. .|..
T Consensus       342 vsGSdnG~IaLWs~~KKkplf~~~~A----------------------------Hgv~~~~~~~~~~~Witsla~-i~~s  392 (479)
T KOG0299|consen  342 VSGSDNGSIALWSLLKKKPLFTSRLA----------------------------HGVIPELDPVNGNFWITSLAV-IPGS  392 (479)
T ss_pred             eeccCCceEEEeeecccCceeEeecc----------------------------ccccCCccccccccceeeeEe-cccC
Confidence            5555 668999999876543332100                            000000011111136999998 8999


Q ss_pred             cEEEEecCCCeEEEEEecCC----eEEEEeecCCceeeEEEecCCCCeEEEe-ecCCcEEEe
Q 012712          356 EYVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPHSTVLASS-GIESDIKIL  412 (458)
Q Consensus       356 ~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iw  412 (458)
                      .++|+|+.+|.|++|-+.++    +++..+. -.+.|++++|+++|+.|++| +....+-=|
T Consensus       393 dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  393 DLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             ceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence            99999999999999999887    3444454 56789999999999966554 545444444

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=2.3e-29  Score=225.18  Aligned_cols=251  Identities=12%  Similarity=0.116  Sum_probs=184.1

Q ss_pred             ecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccce------eeeecccccc
Q 012712           79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGV------ETKLLGKHQG  151 (458)
Q Consensus        79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~------~~~~~~~~~~  151 (458)
                      |+.++.|++|+......+..+ .+|.+.|.+++|+|  + +.+|++|+.||.|++||+.++...      ....+.+|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            667889999998776665655 79999999999999  6 789999999999999999764321      1123678999


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      .|.+++|+|++..+|++++.|+.|++||+++++....+.           +...|.+++|+|+ +.+|++++.|+.|++|
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------~~~~V~Slswspd-G~lLat~s~D~~IrIw  194 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------MPKKLSSLKWNIK-GNLLSGTCVGKHMHII  194 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------cCCcEEEEEECCC-CCEEEEEecCCEEEEE
Confidence            999999999986677899999999999999987654443           2236899999998 7899999999999999


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccce-----eEEEeCCCCcEEEEec-CC----cEEEEEccCCCCCCCCCCC
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-----TGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSS  301 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~-~~----~i~i~~~~~~~~~~~~~~~  301 (458)
                      |+++++...               ....|.+.+     ....|++++.+|++++ ++    .|++||++..         
T Consensus       195 D~Rsg~~i~---------------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~---------  250 (568)
T PTZ00420        195 DPRKQEIAS---------------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT---------  250 (568)
T ss_pred             ECCCCcEEE---------------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC---------
Confidence            999876422               223344433     2334568888888765 43    5999998852         


Q ss_pred             CccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712          302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI  381 (458)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  381 (458)
                                                  ..++..+..+.....+... +..++|.++++|+.|+.|++|++..+. +..+
T Consensus       251 ----------------------------~~pl~~~~ld~~~~~L~p~-~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l  300 (568)
T PTZ00420        251 ----------------------------TSALVTMSIDNASAPLIPH-YDESTGLIYLIGKGDGNCRYYQHSLGS-IRKV  300 (568)
T ss_pred             ----------------------------CCceEEEEecCCccceEEe-eeCCCCCEEEEEECCCeEEEEEccCCc-EEee
Confidence                                        1122222222221112222 325668899999999999999997764 2333


Q ss_pred             ec--CCceeeEEEecCCCC
Q 012712          382 EA--DRHVVNCIEPHPHST  398 (458)
Q Consensus       382 ~~--~~~~v~~~~~s~~~~  398 (458)
                      ..  +..++.+++|.|+..
T Consensus       301 ~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        301 NEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cccccCCCccceEEccccc
Confidence            22  556788999999753

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=1.4e-29  Score=225.70  Aligned_cols=271  Identities=15%  Similarity=0.214  Sum_probs=194.9

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceee------------eeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL------------SFHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      |-..|+....++|+..+++++.+.....|+...+..+.            ..+.+|.+.|.+++|+|+ ++++|++++.|
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D   97 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED   97 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence            44556667777787777778877777788765443221            123689999999999984 56799999999


Q ss_pred             CcEEEeecccccc-----eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712          128 GQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT  202 (458)
Q Consensus       128 g~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  202 (458)
                      ++|++||+.++..     .....+.+|...|.+++|+|++.++|++++.|+.|++||+++++....+..          +
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~----------h  167 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC----------H  167 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC----------C
Confidence            9999999976532     122347889999999999998767899999999999999998876655532          3


Q ss_pred             ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                      ...|.+++|+|+ +.+|++++.|+.|++||+++++.                         +.                 
T Consensus       168 ~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~-------------------------v~-----------------  204 (493)
T PTZ00421        168 SDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTI-------------------------VS-----------------  204 (493)
T ss_pred             CCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcE-------------------------EE-----------------
Confidence            447999999997 78999999999999999987531                         10                 


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                                                                          .+.+|... ....+.| .+++..+++++
T Consensus       205 ----------------------------------------------------tl~~H~~~-~~~~~~w-~~~~~~ivt~G  230 (493)
T PTZ00421        205 ----------------------------------------------------SVEAHASA-KSQRCLW-AKRKDLIITLG  230 (493)
T ss_pred             ----------------------------------------------------EEecCCCC-cceEEEE-cCCCCeEEEEe
Confidence                                                                11112111 0223344 66666666543


Q ss_pred             ----CCCeEEEEEecCCe-EEEEeecC-CceeeEEEecCCCCeEEEee-cCCcEEEecCCcccccccc--cccccEEEEE
Q 012712          363 ----DCGRIFIWKKKGGE-LIRVIEAD-RHVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLP--TNIEQVCFSI  433 (458)
Q Consensus       363 ----~dg~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~--~~~~~v~~~~  433 (458)
                          .|+.|++||+.+.. ++.....+ ...+....|++++++|++++ .|+.|++|++.+++.....  .+...+..++
T Consensus       231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~  310 (493)
T PTZ00421        231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC  310 (493)
T ss_pred             cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence                57999999997654 44444333 33566678999999999887 5999999999988765332  2334577777


Q ss_pred             EecCC
Q 012712          434 YSADY  438 (458)
Q Consensus       434 ~s~d~  438 (458)
                      |.|.-
T Consensus       311 ~~pk~  315 (493)
T PTZ00421        311 MMPKW  315 (493)
T ss_pred             ecccc
Confidence            77743

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.98  E-value=1.4e-30  Score=215.87  Aligned_cols=290  Identities=14%  Similarity=0.179  Sum_probs=237.8

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc---eeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      .+.+| .|.+-|.++.+|...+++.||+. |.|+|||+....   ++..+. ....+-|.++...|  ||+.|++|++-.
T Consensus       412 q~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeas  487 (705)
T KOG0639|consen  412 QINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEAS  487 (705)
T ss_pred             hhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccc
Confidence            33444 49999999999999999999987 779999996542   122220 12356788999999  999999999999


Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      ++.|||+..........+....-...+++.+||. ++.+++..||.|.|||+.....+..++.          +...+.|
T Consensus       488 tlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqG----------htDGasc  556 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDGASC  556 (705)
T ss_pred             eeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccC----------CCCCcee
Confidence            9999999887665444455555567889999999 7899999999999999999988888764          4446899


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT  288 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~  288 (458)
                      +.++++ |..|.+|+-|.+||.||+++++...+                                               
T Consensus       557 Idis~d-GtklWTGGlDntvRcWDlregrqlqq-----------------------------------------------  588 (705)
T KOG0639|consen  557 IDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQ-----------------------------------------------  588 (705)
T ss_pred             EEecCC-CceeecCCCccceeehhhhhhhhhhh-----------------------------------------------
Confidence            999998 79999999999999999998753221                                               


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                                                                        |.-...|.++.+ +|.+.+|+.|-+++.+.
T Consensus       589 --------------------------------------------------hdF~SQIfSLg~-cP~~dWlavGMens~ve  617 (705)
T KOG0639|consen  589 --------------------------------------------------HDFSSQIFSLGY-CPTGDWLAVGMENSNVE  617 (705)
T ss_pred             --------------------------------------------------hhhhhhheeccc-CCCccceeeecccCcEE
Confidence                                                              111113677777 89999999999999998


Q ss_pred             EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCC
Q 012712          369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSC  448 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~  448 (458)
                      +... ++.....+.-|...|.++.|.+.|+++++.+.|+.+..|...-|..+........|.++..|.|.++++||+.|.
T Consensus       618 vlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  618 VLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             EEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCc
Confidence            8876 444455677799999999999999999999999999999999887777777788899999999999999999999


Q ss_pred             ceEEEEEec
Q 012712          449 SILLFEWLV  457 (458)
Q Consensus       449 ~i~~w~~~~  457 (458)
                      .-.||+.++
T Consensus       697 kATVYeV~Y  705 (705)
T KOG0639|consen  697 KATVYEVIY  705 (705)
T ss_pred             ceEEEEEeC
Confidence            999998763

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=7.4e-30  Score=209.05  Aligned_cols=259  Identities=18%  Similarity=0.305  Sum_probs=200.1

Q ss_pred             EeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceee---------eeccCCCcceeEEEEccCCCCe
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKL---------SFHSGHNDNVFQAKIMPFTDDR  119 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~  119 (458)
                      +++..+.+ .|.+.|+.+++.|+. ..+|+.+..+.|.|||..+.....         ..+.+|...-++++|++. ..-
T Consensus       114 ~v~i~~~i-~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~-~~g  191 (422)
T KOG0264|consen  114 KVEISQKI-NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ-QEG  191 (422)
T ss_pred             ceEEEEec-cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc-cce
Confidence            34444444 499999999999976 567778888999999986532211         123789988899999985 556


Q ss_pred             EEEEEcCCCcEEEeecccccc-----eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC--Cccceeeec
Q 012712          120 SIVTCAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG--AATELFTCR  192 (458)
Q Consensus       120 ~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~  192 (458)
                      .|++++.|+.|++||+.....     .....+.+|...|..++|+|....+|.+++.|+.+.|||+|++  ++.....  
T Consensus       192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~--  269 (422)
T KOG0264|consen  192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK--  269 (422)
T ss_pred             eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--
Confidence            799999999999999976443     2344578999999999999998899999999999999999963  2222211  


Q ss_pred             ccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC
Q 012712          193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ  272 (458)
Q Consensus       193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (458)
                              .+..++.|++|+|-++.+||+|+.|++|.+||+|+.+.                                  
T Consensus       270 --------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----------------------------------  307 (422)
T KOG0264|consen  270 --------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----------------------------------  307 (422)
T ss_pred             --------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----------------------------------
Confidence                    16678999999999899999999999999999998641                                  


Q ss_pred             CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEec
Q 012712          273 SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG  352 (458)
Q Consensus       273 ~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s  352 (458)
                                                                                 ++..+.+|...  |..+.| +
T Consensus       308 -----------------------------------------------------------~lh~~e~H~de--v~~V~W-S  325 (422)
T KOG0264|consen  308 -----------------------------------------------------------PLHTFEGHEDE--VFQVEW-S  325 (422)
T ss_pred             -----------------------------------------------------------CceeccCCCcc--eEEEEe-C
Confidence                                                                       23344455553  666776 6


Q ss_pred             CCC-cEEEEecCCCeEEEEEecCC--------------eEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCc
Q 012712          353 PKC-EYVVSGSDCGRIFIWKKKGG--------------ELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNA  416 (458)
Q Consensus       353 ~~~-~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~  416 (458)
                      |+. ..||+++.|+++.+||+..-              +++..-.||...|..+.|+|+.. .|+++++|+.+.||+...
T Consensus       326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            654 46677788888888887431              34456678999999999999887 467889999999999764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=2.6e-28  Score=181.90  Aligned_cols=301  Identities=15%  Similarity=0.204  Sum_probs=211.5

Q ss_pred             CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      |..|.|.|.|++.++|+...+.||-....-..++.  .+-+..    ....-+.++-+.|++.|.|.+|||+|++||+|+
T Consensus        35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~--~hea~~----~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH--AHEAAK----QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             eeeEEecCCCceEEeccCCceEEEEccccccCccc--cccccc----CCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            46788999999999999999999876652211111  000000    000122334567999999999999999999999


Q ss_pred             CCCeEEEEECCCcce-----eeeeccCCCcceeEEEEcc--CCCCeEEEEEcC-CCcEEEeecccccceeeeeccccccc
Q 012712           81 DDRRVILWDWKTERV-----KLSFHSGHNDNVFQAKIMP--FTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~~~--~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      .|.+|++-.+....+     -.++ .-|.+.|..++|..  ...+..|++++. |..|.+-|...++....  +.+|++.
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a--~sghtgh  185 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA--LSGHTGH  185 (350)
T ss_pred             CCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee--ecCCccc
Confidence            999999976654332     1333 56999999999974  224567777664 77787778877777655  8899999


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      |.++- +-++ -++++|+.|.+|++||++-..++..+.....   .+-..                              
T Consensus       186 ilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~---~~gle------------------------------  230 (350)
T KOG0641|consen  186 ILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFH---DGGLE------------------------------  230 (350)
T ss_pred             EEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCccc---CCCcc------------------------------
Confidence            98763 3344 6899999999999999987765544321100   00001                              


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                                                  ...|.+++..|.|++|++|..+ ...+||++.                    
T Consensus       231 ----------------------------ssavaav~vdpsgrll~sg~~dssc~lydirg--------------------  262 (350)
T KOG0641|consen  231 ----------------------------SSAVAAVAVDPSGRLLASGHADSSCMLYDIRG--------------------  262 (350)
T ss_pred             ----------------------------cceeEEEEECCCcceeeeccCCCceEEEEeeC--------------------
Confidence                                        1234555555555555555533 455555554                    


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE-----EEEeecCCc
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL-----IRVIEADRH  386 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~  386 (458)
                                        ...++.+..|...  |.++.| +|...|+++++.|..|++-|+. |.+     +-....|..
T Consensus       263 ------------------~r~iq~f~phsad--ir~vrf-sp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkd  320 (350)
T KOG0641|consen  263 ------------------GRMIQRFHPHSAD--IRCVRF-SPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKD  320 (350)
T ss_pred             ------------------CceeeeeCCCccc--eeEEEe-CCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccC
Confidence                              3445666667664  899998 9999999999999999999984 332     234456888


Q ss_pred             eeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          387 VVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      .+..+.|+|..--+++.+.|.++.+|.+.
T Consensus       321 k~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  321 KAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEEecCccceeeeccCcceEEEeccC
Confidence            89999999999899999999999999764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-30  Score=194.95  Aligned_cols=269  Identities=19%  Similarity=0.265  Sum_probs=207.0

Q ss_pred             eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeeeeccccccceEEEEEc-CCCCeEEEEecCCCe
Q 012712           97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIE-PGSPHVFYTCGEDGL  174 (458)
Q Consensus        97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~  174 (458)
                      .++...|...|.++...-  -|+.|+||+.|++|+|+.++.+.. .....+.+|.++|..++|. |.-..+|++++.||.
T Consensus         4 q~idt~H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk   81 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK   81 (299)
T ss_pred             eehhhhhhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence            344567888898888776  899999999999999999988765 4455699999999999995 443389999999999


Q ss_pred             EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712          175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP  253 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  253 (458)
                      |.||.-++++-.+....      ..  +...|++++|.|.+ +-.|++++.||.|.+.+.+....            ...
T Consensus        82 VIiWke~~g~w~k~~e~------~~--h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~------------w~t  141 (299)
T KOG1332|consen   82 VIIWKEENGRWTKAYEH------AA--HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG------------WTT  141 (299)
T ss_pred             EEEEecCCCchhhhhhh------hh--hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC------------ccc
Confidence            99999888854433321      11  56689999999963 46789999999999999887521            122


Q ss_pred             CccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712          254 PNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP  333 (458)
Q Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (458)
                      ..+...|.-.+++++|.|...                                                          .
T Consensus       142 ~ki~~aH~~GvnsVswapa~~----------------------------------------------------------~  163 (299)
T KOG1332|consen  142 SKIVFAHEIGVNSVSWAPASA----------------------------------------------------------P  163 (299)
T ss_pred             hhhhhccccccceeeecCcCC----------------------------------------------------------C
Confidence            445667888899999988520                                                          0


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC--eEEEEeecCCceeeEEEecCCC----CeEEEeecCC
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG--ELIRVIEADRHVVNCIEPHPHS----TVLASSGIES  407 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~d~  407 (458)
                      ..+..|...         .+ -+.|++|+.|..|+||+..++  +..++|++|.+.|+.++|.|.-    .+||+++.||
T Consensus       164 g~~~~~~~~---------~~-~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  164 GSLVDQGPA---------AK-VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             ccccccCcc---------cc-cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            001111110         11 357899999999999998775  3446689999999999999974    4799999999


Q ss_pred             cEEEecCCcc----cccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          408 DIKILTPNAA----DRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       408 ~i~iw~~~~~----~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ++.||.....    +...+......+..+.||+.|..|+.++.|+.|.+|.-
T Consensus       234 ~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  234 TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            9999987632    22234445667999999999999999999999999974

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=2e-29  Score=216.91  Aligned_cols=283  Identities=19%  Similarity=0.252  Sum_probs=233.2

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceee-eeccCCCcceeE-EEEccCCCCeEEEEEcCCC
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQ-AKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~-~~~~~~~~~~~l~s~~~dg  128 (458)
                      +++.+.+.||+..|..+++.+. ..++++|.||++++|+-..++.+. ....+|.+.|.. ++|.+ .++..|++|+.|.
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDT   81 (745)
T ss_pred             ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccc
Confidence            4667889999999999998754 478999999999999976555433 333667788877 88886 3677899999999


Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      .|.+|......+...  +.+|...|.+++...++ . +++|+.|.++++|-...  +...+.        +  |...|.+
T Consensus        82 ~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~--l~~~l~--------g--H~asVWA  145 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE--LVYSLQ--------G--HTASVWA  145 (745)
T ss_pred             eEEEEecCCCCchhh--hhccccceeeeecCCcC-c-eEecccccceEEecchh--hhcccC--------C--cchheee
Confidence            999999988887766  99999999999988887 3 89999999999996543  333332        2  5668999


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT  288 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~  288 (458)
                      ++.-|+  +.+++|+.|.+|++|.-.+.                 ...+.+|...|+.+++-+++.++-++.|+.|++|+
T Consensus       146 v~~l~e--~~~vTgsaDKtIklWk~~~~-----------------l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~  206 (745)
T KOG0301|consen  146 VASLPE--NTYVTGSADKTIKLWKGGTL-----------------LKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWD  206 (745)
T ss_pred             eeecCC--CcEEeccCcceeeeccCCch-----------------hhhhccchhheeeeEEecCCCeEeecCCceEEEEe
Confidence            999997  38999999999999987442                 34566799999999999999888888889999999


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                      +.                                       +..+..+.+|.+-  +.++.. .+++..++++++|++++
T Consensus       207 ~~---------------------------------------ge~l~~~~ghtn~--vYsis~-~~~~~~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  207 LD---------------------------------------GEVLLEMHGHTNF--VYSISM-ALSDGLIVSTGEDRTLR  244 (745)
T ss_pred             cc---------------------------------------CceeeeeeccceE--EEEEEe-cCCCCeEEEecCCceEE
Confidence            85                                       4577888899884  788886 77888999999999999


Q ss_pred             EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      ||+..  ++.+.+.-..-.|+++.+-++|. |++|+.||.||||...
T Consensus       245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            99975  77788875555899999988887 5678889999999766

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.6e-29  Score=196.56  Aligned_cols=306  Identities=16%  Similarity=0.209  Sum_probs=215.7

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCccee-eeec--cCCCcceeEEEEccCCCCeEEEE-EcCCCc
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFH--SGHNDNVFQAKIMPFTDDRSIVT-CAADGQ  129 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~--~~~~~~i~~~~~~~~~~~~~l~s-~~~dg~  129 (458)
                      +..|++|.+.|++++|+.||++|||++.|+.|+||++++.+.. ++.+  .-.-+..+.+.|+|  |-+-++. +-...+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--CcceEEEEEccCCE
Confidence            3568999999999999999999999999999999999864321 0000  11122467889999  8765554 445567


Q ss_pred             EEEeecccccc---eee-------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712          130 VRHAQILERGG---VET-------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN  199 (458)
Q Consensus       130 i~vw~~~~~~~---~~~-------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  199 (458)
                      +++|.+...+.   ...       ..-..|...+..+-...++ .++++++.|..|.+|+++ |+.++.+...       
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtn-------  227 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTN-------  227 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccc-------
Confidence            99998754322   100       0112355667777776666 789999999999999999 7766665432       


Q ss_pred             ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                         ...-+..+.+|+ |+++++++-.-.|++|.+--.+--.       .+.......+.+|...|..++|+++.+.+++.
T Consensus       228 ---q~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG~-------fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  228 ---QSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDGT-------FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             ---cccccceeeCCC-CcEEEEecCCCCceEEEEEeccCcc-------hhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence               223467789998 7999999998999999875433111       11111223456789999999999999999999


Q ss_pred             c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee--cCccceeeeeEEEEecCCCc
Q 012712          280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPKCE  356 (458)
Q Consensus       280 ~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~s~~~~  356 (458)
                      + ||++++||++-.....+-+                               ..++..  .-|.....-..+.. +|+|+
T Consensus       297 SkDG~wriwdtdVrY~~~qDp-------------------------------k~Lk~g~~pl~aag~~p~RL~l-sP~g~  344 (420)
T KOG2096|consen  297 SKDGKWRIWDTDVRYEAGQDP-------------------------------KILKEGSAPLHAAGSEPVRLEL-SPSGD  344 (420)
T ss_pred             ecCCcEEEeeccceEecCCCc-------------------------------hHhhcCCcchhhcCCCceEEEe-CCCCc
Confidence            8 6799999987532221110                               011111  01111111337777 99999


Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          357 YVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       357 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      .||... ...+++|..++|+...+++ .|...|.+++|+++|++++|++ |..+++..-.
T Consensus       345 ~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt  402 (420)
T KOG2096|consen  345 SLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT  402 (420)
T ss_pred             EEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence            998654 5679999999998877764 5899999999999999999998 6788887633

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.3e-30  Score=221.06  Aligned_cols=240  Identities=18%  Similarity=0.201  Sum_probs=196.5

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      |.+++|.||++||.|++|++..-.-..               .-.....++.|.+.|+.+....+++.|+++|.|-+|++
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEP---------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCc---------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            556679999999999999987432110               01134568899999999999999999999999999999


Q ss_pred             EECCCcc--eeeeeccCCCcceeEEEE-ccCCCCeEEEEEcCCCcEEEeecccccc--------eeeeecc-ccccceEE
Q 012712           88 WDWKTER--VKLSFHSGHNDNVFQAKI-MPFTDDRSIVTCAADGQVRHAQILERGG--------VETKLLG-KHQGRAHK  155 (458)
Q Consensus        88 wd~~~~~--~~~~~~~~~~~~i~~~~~-~~~~~~~~l~s~~~dg~i~vw~~~~~~~--------~~~~~~~-~~~~~v~~  155 (458)
                      |+...+.  ++..+ ..|..-|.|+++ .+  +..++|+||.|+.|.+||++++..        +....+. ++...|.+
T Consensus       100 W~~~~~~~~c~sti-r~H~DYVkcla~~ak--~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTI-RTHKDYVKCLAYIAK--NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             eecccCcchhHhhh-hcccchheeeeeccc--CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            9998773  44444 789999999999 66  889999999999999999987622        1222233 78899999


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      ++.++.+ .++++|+.++.+++||.++.+.+..++.          |...|.++..++| |..+++++.||+|++||+..
T Consensus       177 LA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrG----------HTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  177 LAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRG----------HTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             eecCCcc-eEEEecCcccceEEeccccccceeeeec----------cccceEEEEEcCC-CCeEeecCCCceEEeeeccc
Confidence            9999999 8999999999999999999987776653          5557999999998 79999999999999999998


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCC
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG  292 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~  292 (458)
                      .+..              .. ..-|...+.++..+|+-..+.+|+ ++.|+.=|+.+.
T Consensus       245 QrCl--------------~T-~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  245 QRCL--------------AT-YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ccee--------------ee-EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            7633              22 333666799999999999999988 557888888763

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=7.8e-29  Score=221.80  Aligned_cols=215  Identities=14%  Similarity=0.137  Sum_probs=155.9

Q ss_pred             eeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCCcce--------eeeeccCCCcceeEEEEccCCCCeE-EE
Q 012712           53 IYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV--------KLSFHSGHNDNVFQAKIMPFTDDRS-IV  122 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~-l~  122 (458)
                      .+..+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.++..        +.. +.+|...|.+++|+|  ++.. |+
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~-L~gH~~~V~sVaf~P--~g~~iLa  142 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGHKKKISIIDWNP--MNYYIMC  142 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE-eecCCCcEEEEEECC--CCCeEEE
Confidence            45678999999999999996 78999999999999999976421        223 368999999999999  8765 57


Q ss_pred             EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712          123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT  202 (458)
Q Consensus       123 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  202 (458)
                      +++.|+.|++||+++++....  +. |...|.+++|+|+| .+|++++.|+.|++||+++++.+..+..+..     ...
T Consensus       143 SgS~DgtIrIWDl~tg~~~~~--i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-----~~~  213 (568)
T PTZ00420        143 SSGFDSFVNIWDIENEKRAFQ--IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-----GKN  213 (568)
T ss_pred             EEeCCCeEEEEECCCCcEEEE--Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecccC-----Cce
Confidence            899999999999998876543  33 56789999999999 6889999999999999999987766543211     001


Q ss_pred             ecceEEEEECCCCCcEEEEecCCC----eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS  278 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (458)
                      ...+....|+++ +.++++++.++    .|++||++....        ++.    ......+.+.+......++|.++++
T Consensus       214 s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~--------pl~----~~~ld~~~~~L~p~~D~~tg~l~ls  280 (568)
T PTZ00420        214 TKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTS--------ALV----TMSIDNASAPLIPHYDESTGLIYLI  280 (568)
T ss_pred             eEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCC--------ceE----EEEecCCccceEEeeeCCCCCEEEE
Confidence            112333456787 56788777664    799999986421        110    0011112223333334556888888


Q ss_pred             ec-CCcEEEEEccCC
Q 012712          279 YN-DEFIYLFTQDMG  292 (458)
Q Consensus       279 ~~-~~~i~i~~~~~~  292 (458)
                      |. |+.|++|++..+
T Consensus       281 GkGD~tIr~~e~~~~  295 (568)
T PTZ00420        281 GKGDGNCRYYQHSLG  295 (568)
T ss_pred             EECCCeEEEEEccCC
Confidence            86 558999999764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.2e-28  Score=192.09  Aligned_cols=269  Identities=19%  Similarity=0.161  Sum_probs=207.2

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      ......|.++.|+|  .++.|+.++.||.+++|++.......   .-.|..++.+++|.++.  .+++|+.||.|+.+|+
T Consensus        10 npP~d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~---~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   10 NPPEDGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL---KFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDL   82 (323)
T ss_pred             CCChhceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh---heecCCceeeeeccCCc--eEEEeccCceEEEEEe
Confidence            44577899999998  88888888999999999998875443   33488999999999965  5899999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      .++.......           |..++.|+.+++. ...+++|+.|++|++||.+.......               . ..
T Consensus        83 n~~~~~~igt-----------h~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~---------------~-d~  134 (323)
T KOG1036|consen   83 NTGNEDQIGT-----------HDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGT---------------F-DQ  134 (323)
T ss_pred             cCCcceeecc-----------CCCceEEEEeecc-CCeEEEcccCccEEEEeccccccccc---------------c-cc
Confidence            9987665554           6678999999986 67999999999999999997432211               1 11


Q ss_pred             ccceeEEEeCCCCcEEEEe-cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSY-NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...|.++..+  |..|+.| .+..+.+||+++.....+..                                      ..
T Consensus       135 ~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r--------------------------------------eS  174 (323)
T KOG1036|consen  135 GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR--------------------------------------ES  174 (323)
T ss_pred             CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc--------------------------------------cc
Confidence            2367666654  4456554 46689999998853322111                                      11


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC----eEEEEeecCC---------ceeeEEEecCCCCeEEEeecC
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADR---------HVVNCIEPHPHSTVLASSGIE  406 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~d  406 (458)
                      .-...++++++ -|++.=.++++-||+|.+=.++..    +....++.|.         -+|++++|+|-...||||+.|
T Consensus       175 ~lkyqtR~v~~-~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD  253 (323)
T KOG1036|consen  175 SLKYQTRCVAL-VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD  253 (323)
T ss_pred             cceeEEEEEEE-ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence            11124788988 678877888999999988666554    3345566664         269999999999999999999


Q ss_pred             CcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeee
Q 012712          407 SDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQN  445 (458)
Q Consensus       407 ~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~  445 (458)
                      |.|.+||+.+.+.+ ++......|.+++|+.||..||.++
T Consensus       254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            99999999988776 5555556799999999999998865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2e-29  Score=206.65  Aligned_cols=288  Identities=14%  Similarity=0.225  Sum_probs=223.1

Q ss_pred             CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC
Q 012712          103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT  182 (458)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  182 (458)
                      ..+.|+++.|+|  ....|++|+.||.+++|.+..........+.-...+|.+..|.|+|...+++++....++.||+.+
T Consensus       212 s~~~I~sv~FHp--~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  212 SHGGITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             CcCCceEEEecC--CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            346899999999  999999999999999999876544333334445678999999999966899999999999999998


Q ss_pred             CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc
Q 012712          183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV  262 (458)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (458)
                      .+..+.-.....       ....+.....+|+ +++|+..+..|.|.+....++++.....                -.+
T Consensus       290 ak~~k~~~~~g~-------e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli~s~K----------------ieG  345 (514)
T KOG2055|consen  290 AKVTKLKPPYGV-------EEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELITSFK----------------IEG  345 (514)
T ss_pred             cccccccCCCCc-------ccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhhheee----------------ecc
Confidence            876543322111       1224677888998 6899999999999999999887654422                257


Q ss_pred             ceeEEEeCCCCcEEEE-ecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712          263 GITGLAFSDQSELLVS-YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN  341 (458)
Q Consensus       263 ~i~~~~~~~~~~~l~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (458)
                      .+..++|+.+++.|++ +++|.|++||++..                                      .++..+.....
T Consensus       346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--------------------------------------~~~~rf~D~G~  387 (514)
T KOG2055|consen  346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQN--------------------------------------SCLHRFVDDGS  387 (514)
T ss_pred             EEeeEEEecCCcEEEEEcCCceEEEEecCCc--------------------------------------ceEEEEeecCc
Confidence            8999999999986554 55789999999873                                      34444443222


Q ss_pred             eeeeeEEEEecCCCcEEEEecCCCeEEEEEecC------CeEEEEeecCCceeeEEEecCCCCeEEEeec--CCcEEEec
Q 012712          342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------GELIRVIEADRHVVNCIEPHPHSTVLASSGI--ESDIKILT  413 (458)
Q Consensus       342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--d~~i~iw~  413 (458)
                      - .-++++. ++++.|||+|+..|-|.|||.++      .+++.++..-...|++|+|+||.++||.+|.  ...+|+-.
T Consensus       388 v-~gts~~~-S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH  465 (514)
T KOG2055|consen  388 V-HGTSLCI-SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVH  465 (514)
T ss_pred             c-ceeeeee-cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence            1 2456776 99999999999999999999654      3566666666678999999999999988765  67899988


Q ss_pred             CCccccc-cc---ccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          414 PNAADRA-TL---PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       414 ~~~~~~~-~~---~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +.+.... .+   ....+.|++++|||.|.+||.|..+|.+.+|+.-
T Consensus       466 vPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  466 VPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            8765432 22   2334459999999999999999999999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=197.12  Aligned_cols=277  Identities=16%  Similarity=0.245  Sum_probs=219.6

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW   88 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw   88 (458)
                      ..+.+.+++.|.+.+||.+++|+++.+                     +.||.+.|+++.|++.+.++++++.|++..||
T Consensus       159 tqpi~gtASADhTA~iWs~Esg~CL~~---------------------Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  159 TQPICGTASADHTARIWSLESGACLAT---------------------YTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             CCcceeecccccceeEEeeccccceee---------------------ecccccceeeEEeccccceEEEccCCcchHHH
Confidence            345788999999999999999998854                     88999999999999999999999999999999


Q ss_pred             EC------CCc----------------------------------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           89 DW------KTE----------------------------------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        89 d~------~~~----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      ..      ...                                  .++..+ .+|.+.|.+..|..  .++.+++++.|.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~--gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLA--GGQQMVTASWDR  294 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-eccccceEehhhhc--Ccceeeeeeccc
Confidence            72      110                                  012233 68999999999999  999999999999


Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      +..+||+++++.+..  +.+|..+.+.++-+|.. .++++.+.|.+.++||++..  ++.....     ++  +...|++
T Consensus       295 TAnlwDVEtge~v~~--LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--I~sV~VF-----QG--HtdtVTS  362 (481)
T KOG0300|consen  295 TANLWDVETGEVVNI--LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--IQSVAVF-----QG--HTDTVTS  362 (481)
T ss_pred             cceeeeeccCceecc--ccCcchhccccccCCcc-eEEEEeccCceeEeccchhh--cceeeee-----cc--cccceeE
Confidence            999999999998876  99999999999999998 79999999999999999833  2222221     23  4557999


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLF  287 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~  287 (458)
                      +.|..+  ..+++|+.|.+|++||+++.+.              +...+. ...+++.++.+..+..|+.-.++ .|++|
T Consensus       363 ~vF~~d--d~vVSgSDDrTvKvWdLrNMRs--------------plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlf  425 (481)
T KOG0300|consen  363 VVFNTD--DRVVSGSDDRTVKVWDLRNMRS--------------PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLF  425 (481)
T ss_pred             EEEecC--CceeecCCCceEEEeeeccccC--------------cceeee-cCCccceeEeecCCceEEeccCCceEEEE
Confidence            999986  5899999999999999998752              111221 35688999999999999998877 69999


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC--cEEEEecCCC
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--EYVVSGSDCG  365 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~--~~l~~~~~dg  365 (458)
                      |++......                                  .+...-++|...  |.|++| ..+.  .-|++++.|.
T Consensus       426 DlnG~RlaR----------------------------------lPrtsRqgHrRM--V~c~AW-~eehp~cnLftcGFDR  468 (481)
T KOG0300|consen  426 DLNGNRLAR----------------------------------LPRTSRQGHRRM--VTCCAW-LEEHPACNLFTCGFDR  468 (481)
T ss_pred             ecCCCcccc----------------------------------CCccccccccee--eeeeec-cccCcccccccccccc
Confidence            998643211                                  122334567764  888888 4332  3567888999


Q ss_pred             eEEEEEecCC
Q 012712          366 RIFIWKKKGG  375 (458)
Q Consensus       366 ~i~iwd~~~~  375 (458)
                      .+.-|++...
T Consensus       469 ~v~gW~in~p  478 (481)
T KOG0300|consen  469 MVAGWKINTP  478 (481)
T ss_pred             eeeeeEeccc
Confidence            9999998643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-28  Score=192.72  Aligned_cols=316  Identities=16%  Similarity=0.154  Sum_probs=217.1

Q ss_pred             EEEEECCCcceeee----eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee--ccccccceEEEEE
Q 012712           85 VILWDWKTERVKLS----FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL--LGKHQGRAHKLAI  158 (458)
Q Consensus        85 i~iwd~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~v~~~~~  158 (458)
                      ..-|+.+.....+.    .+.+|...|++++|+.  ||+.|++++.|+.|++|+++.-.....+.  ..-.-+..+.+.|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~F  140 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVF  140 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEE
Confidence            44565554443322    2479999999999999  99999999999999999997643211110  1111235678999


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCCcc-ceeeecccCCCC-cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRR-NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      .||...+++++-...++++|.+...+.- ..+...+...+. ...+...+..+-... ++.+|++++.|..|.+|+++ +
T Consensus       141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G  218 (420)
T KOG2096|consen  141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G  218 (420)
T ss_pred             CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C
Confidence            9999788888888889999987543220 011111111000 001334555566655 47899999999999999998 5


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD  315 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (458)
                      +.++..               ......-...+.+|+|+++++++ .-.+++|.+--.+.-.                   
T Consensus       219 q~L~~i---------------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~-------------------  264 (420)
T KOG2096|consen  219 QLLQSI---------------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT-------------------  264 (420)
T ss_pred             ceeeee---------------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc-------------------
Confidence            543321               12233456678999999999988 4479999864322110                   


Q ss_pred             CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC-------CeEEEEe----ecC
Q 012712          316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-------GELIRVI----EAD  384 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~----~~~  384 (458)
                                 ...-.....++||...  |..++| +++...+++.+.||+++|||++-       .+.+++.    ...
T Consensus       265 -----------fqev~rvf~LkGH~sa--V~~~aF-sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa  330 (420)
T KOG2096|consen  265 -----------FQEVKRVFSLKGHQSA--VLAAAF-SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA  330 (420)
T ss_pred             -----------hhhhhhhheeccchhh--eeeeee-CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc
Confidence                       0113345678899986  899998 99999999999999999999742       1222222    222


Q ss_pred             CceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc--cccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT--LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       385 ~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      .+....++.+|.|+.||.+. ...|+++..++++...  ...|.+.|.+++|+++|+++++++ |..++++.
T Consensus       331 g~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  331 GSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            33445899999999998654 5689999999886653  345778899999999999999966 45666654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=5.7e-29  Score=214.11  Aligned_cols=276  Identities=15%  Similarity=0.206  Sum_probs=229.4

Q ss_pred             eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEE-EEEcCCCCeEEEEecCCCeEEE
Q 012712           99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK-LAIEPGSPHVFYTCGEDGLVQH  177 (458)
Q Consensus        99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~i  177 (458)
                      .+.+|...|..+++.   ++..+++++.||++++|+-...+......+.+|.+.|.. +++.+..+-.+++|+.|.+|.+
T Consensus         9 ~l~gH~~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EeccCccchheeEec---CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence            347999999999987   466899999999999999887777776667778887777 8887644356899999999999


Q ss_pred             EeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      |.+.+..+...+..          |...|.+++...+ + .+++|+.|.++++|-.....                 ...
T Consensus        86 ~~~~~~~P~~~Lkg----------H~snVC~ls~~~~-~-~~iSgSWD~TakvW~~~~l~-----------------~~l  136 (745)
T KOG0301|consen   86 FKLSQAEPLYTLKG----------HKSNVCSLSIGED-G-TLISGSWDSTAKVWRIGELV-----------------YSL  136 (745)
T ss_pred             EecCCCCchhhhhc----------cccceeeeecCCc-C-ceEecccccceEEecchhhh-----------------ccc
Confidence            99999988887764          5557888887765 3 49999999999999876542                 236


Q ss_pred             cccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712          258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK  337 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (458)
                      .+|...|.+++.-|++.++..++|..|++|.-.                                        ...++|.
T Consensus       137 ~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~----------------------------------------~~l~tf~  176 (745)
T KOG0301|consen  137 QGHTASVWAVASLPENTYVTGSADKTIKLWKGG----------------------------------------TLLKTFS  176 (745)
T ss_pred             CCcchheeeeeecCCCcEEeccCcceeeeccCC----------------------------------------chhhhhc
Confidence            678999999999999954444446689999863                                        4678999


Q ss_pred             CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      +|...  |+++++ -+++ .+++++.||.|++|++ +|+.+.++.+|+.-|.++...+++..++++++|++++||+..  
T Consensus       177 gHtD~--VRgL~v-l~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--  249 (745)
T KOG0301|consen  177 GHTDC--VRGLAV-LDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--  249 (745)
T ss_pred             cchhh--eeeeEE-ecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--
Confidence            99985  899998 5544 5778899999999999 899999999999999999988889999999999999999987  


Q ss_pred             cccccccccc-cEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          418 DRATLPTNIE-QVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       418 ~~~~~~~~~~-~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ++.+...+.. .|+++.+-++|..+ +|+.||.|+||-
T Consensus       250 e~~q~I~lPttsiWsa~~L~NgDIv-vg~SDG~VrVfT  286 (745)
T KOG0301|consen  250 ECVQVITLPTTSIWSAKVLLNGDIV-VGGSDGRVRVFT  286 (745)
T ss_pred             ceEEEEecCccceEEEEEeeCCCEE-EeccCceEEEEE
Confidence            5555555555 69999999999876 889999999995

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.6e-27  Score=202.60  Aligned_cols=372  Identities=11%  Similarity=0.148  Sum_probs=244.3

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC-CCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      .+.+.--..+|.+|+|+.+.+.||.+-.||.|.||++..+-.......+ ....|.+++|++   +..|++.+.+|.|.-
T Consensus        18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~E   94 (691)
T KOG2048|consen   18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITE   94 (691)
T ss_pred             EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEE
Confidence            3444555689999999999999999999999999999886554444344 456799999994   678999999999999


Q ss_pred             eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      ||+.+.+....  +....+.|++++.+|.+ ..++.|+.||.+..++...++.........        ..+++.+++|+
T Consensus        95 wDl~~lk~~~~--~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~r--------q~sRvLslsw~  163 (691)
T KOG2048|consen   95 WDLHTLKQKYN--IDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMR--------QKSRVLSLSWN  163 (691)
T ss_pred             EecccCceeEE--ecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeeccc--------ccceEEEEEec
Confidence            99999887765  67778899999999999 678999999988888877766543332221        34589999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712          213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG  292 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~  292 (458)
                      |+ +..++.|+.||.|++||...+........       ...........-|.++.|..++.++..-+.|.|.+||...+
T Consensus       164 ~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~-------~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  164 PT-GTKIAGGSIDGVIRIWDVKSGQTLHIITM-------QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             CC-ccEEEecccCceEEEEEcCCCceEEEeee-------cccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence            98 68899999999999999998765431100       01112222345688899888775554445789999999987


Q ss_pred             CCCCCCCCCCccccccccccCCCCccccCCCCCCcccc-cCcee---------ecCccceeeeeEEEEecCCCcEEEEec
Q 012712          293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR-IAPQV---------YKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      ........+....  ......+++..+.....+..... .....         ...|..  .+.+++. .++  .+++|+
T Consensus       236 TLiqS~~~h~adV--l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h--dvrs~av-~~~--~l~sgG  308 (691)
T KOG2048|consen  236 TLIQSHSCHDADV--LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH--DVRSMAV-IEN--ALISGG  308 (691)
T ss_pred             chhhhhhhhhcce--eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcc--cceeeee-ecc--eEEecc
Confidence            7655543322221  12222333333333222221111 00000         012222  3677776 333  777777


Q ss_pred             CCCeEEEEEecCC-----------------------eEE----------------------------EEeecCCceeeEE
Q 012712          363 DCGRIFIWKKKGG-----------------------ELI----------------------------RVIEADRHVVNCI  391 (458)
Q Consensus       363 ~dg~i~iwd~~~~-----------------------~~~----------------------------~~~~~~~~~v~~~  391 (458)
                      .|..+.+-.....                       .++                            +........|.+.
T Consensus       309 ~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~  388 (691)
T KOG2048|consen  309 RDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCA  388 (691)
T ss_pred             eeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeee
Confidence            7776665543210                       000                            0000112348889


Q ss_pred             EecCCCCeEEEeecCCcEEEecC------------------------------------------------Ccccccc--
Q 012712          392 EPHPHSTVLASSGIESDIKILTP------------------------------------------------NAADRAT--  421 (458)
Q Consensus       392 ~~s~~~~~l~s~~~d~~i~iw~~------------------------------------------------~~~~~~~--  421 (458)
                      +.||+|++|+.+.- ..++||.+                                                ++.....  
T Consensus       389 aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~  467 (691)
T KOG2048|consen  389 AISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELK  467 (691)
T ss_pred             ccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhh
Confidence            99999999987751 12222222                                                1111111  


Q ss_pred             ---cccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          422 ---LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       422 ---~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                         .......|+.+.-||||+|+|..+.+|.|.+|+.
T Consensus       468 ~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl  504 (691)
T KOG2048|consen  468 SIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNL  504 (691)
T ss_pred             ccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence               1122345899999999999999999999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=2e-27  Score=206.00  Aligned_cols=292  Identities=12%  Similarity=0.123  Sum_probs=204.8

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEE
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWD   89 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd   89 (458)
                      .++++++.|+.|++||..+++.+.                     .+.+|. .+.+++|+|+++.+ ++++.++.|++||
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~---------------------~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d   59 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTR---------------------TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVID   59 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEE---------------------EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEE
Confidence            568899999999999999887653                     355454 36789999999876 5677889999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEE-cCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEE
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT  168 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  168 (458)
                      ..+++....+ ..+. .+..++|+|  +++.++++ +.++.+++||+.+.+.+..  +. +...+.+++|+|++ .++++
T Consensus        60 ~~~~~~~~~~-~~~~-~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~--~~-~~~~~~~~~~~~dg-~~l~~  131 (300)
T TIGR03866        60 LATGEVIGTL-PSGP-DPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAE--IP-VGVEPEGMAVSPDG-KIVVN  131 (300)
T ss_pred             CCCCcEEEec-cCCC-CccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeE--ee-CCCCcceEEECCCC-CEEEE
Confidence            9988876665 3333 356789999  88877654 5689999999987665443  22 22346789999999 56676


Q ss_pred             ecCCC-eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE-EEecCCCeEEEEecCCCccCCCccCCC
Q 012712          169 CGEDG-LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYTRLYDIRKYKWDGSTDFGQ  246 (458)
Q Consensus       169 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~  246 (458)
                      +..++ .+.+||.++++.......           ...+.+++|+|+ +.++ +++..++.|++||+++.+......+..
T Consensus       132 ~~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~  199 (300)
T TIGR03866       132 TSETTNMAHFIDTKTYEIVDNVLV-----------DQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEI  199 (300)
T ss_pred             EecCCCeEEEEeCCCCeEEEEEEc-----------CCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence            66654 577889887765443321           123567899998 4555 555579999999999876433321110


Q ss_pred             CCCCcCCCccccccccceeEEEeCCCCcEEEEe--cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                      +       ... ........++|+|++++++.+  .++.+.+||..+.+                               
T Consensus       200 ~-------~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-------------------------------  240 (300)
T TIGR03866       200 P-------GVH-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-------------------------------  240 (300)
T ss_pred             c-------ccc-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc-------------------------------
Confidence            0       000 011234568899999975443  35579999987631                               


Q ss_pred             CCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEEecCCeEEEEeecCCceeeEEEecC
Q 012712          325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP  395 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  395 (458)
                             ....+... .  .+.+++| +|+|++|+++ ..+|.|++||+.+++++.+++.. ...+.++++|
T Consensus       241 -------~~~~~~~~-~--~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       241 -------VLDYLLVG-Q--RVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             -------EEEEEEeC-C--CcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence                   22222111 1  2678888 9999999876 46899999999999999999864 5568888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=2.4e-28  Score=189.19  Aligned_cols=308  Identities=16%  Similarity=0.218  Sum_probs=227.1

Q ss_pred             eecCCCceEEEEEec-CCCEEEEecCCCeEEEEECCCcce----------ee----eeccCCCcceeEEEEccCCCCeEE
Q 012712           57 LDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERV----------KL----SFHSGHNDNVFQAKIMPFTDDRSI  121 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~----------~~----~~~~~~~~~i~~~~~~~~~~~~~l  121 (458)
                      ...|.+.|+++...+ .|+++++|+.||.|.+||+++-..          +.    .-..+|.-.|..+.|-|+ |...+
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGMF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCcee
Confidence            457999999999988 689999999999999999975431          11    112568889999999996 77788


Q ss_pred             EEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC--CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712          122 VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS--PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN  199 (458)
Q Consensus       122 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  199 (458)
                      .+++.|.++++||..+.+....  ++ ..+.|.+-+++|-.  ..++++|..+-.|++-|+..|.....+..        
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~--F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG--------  186 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVD--FK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG--------  186 (397)
T ss_pred             ecccccceEEEeecccceeeEE--ee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc--------
Confidence            9999999999999988776654  22 44678888888843  35788888899999999999998777764        


Q ss_pred             ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc-cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS  278 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (458)
                        |...|.++.|+|.....|++|+.||.|++||++.-. ....+...... ..+.......|.+.+.+++|..++.++++
T Consensus       187 --Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k-~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  187 --HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK-RPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             --ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc-cCccccccccccceeeeeeecccchhhhh
Confidence              455799999999987889999999999999998651 11111100000 00112234567899999999999999988


Q ss_pred             ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712          279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY  357 (458)
Q Consensus       279 ~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~  357 (458)
                      .+ ++.+++|+...+.......                              .+....-..+... .+.+     -+...
T Consensus       264 ~gtd~r~r~wn~~~G~ntl~~~------------------------------g~~~~n~~~~~~~-~~~~-----~~s~v  307 (397)
T KOG4283|consen  264 CGTDDRIRVWNMESGRNTLREF------------------------------GPIIHNQTTSFAV-HIQS-----MDSDV  307 (397)
T ss_pred             ccCccceEEeecccCccccccc------------------------------ccccccccccceE-EEee-----cccce
Confidence            77 7799999998865432211                              1111111111110 1221     12223


Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       358 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      ++---.++.+.++++-+++.++.+..|-..|.+.++-|+-+...+++.|+.|..|.+.
T Consensus       308 fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  308 FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence            3333345899999999999999999998899999999999999999999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=1.3e-27  Score=207.16  Aligned_cols=294  Identities=12%  Similarity=0.125  Sum_probs=206.7

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeecccccc
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQG  151 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  151 (458)
                      +..+++++.|+.|++||+.+++.+..+ ..+ ..+.+++|+|  +++.+ ++++.++.|++||..+++....  +..+. 
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~-   73 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGT--LPSGP-   73 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEe--ccCCC-
Confidence            357889999999999999998887776 344 3467899999  98876 5677889999999988765543  33333 


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC-eEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRL  230 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i  230 (458)
                      .+..++|+|++..++++++.++.+++||+++.+.+..+..           ...+.+++|+|+ +.+++++..++ .+.+
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~d-g~~l~~~~~~~~~~~~  141 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------GVEPEGMAVSPD-GKIVVNTSETTNMAHF  141 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------CCCcceEEECCC-CCEEEEEecCCCeEEE
Confidence            3567899999965556667789999999998766554431           123578999998 67888777664 4677


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      ||.++.+....              ..  ....+..++|+|++++|+.++  ++.+++||+.+++....+...       
T Consensus       142 ~d~~~~~~~~~--------------~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-------  198 (300)
T TIGR03866       142 IDTKTYEIVDN--------------VL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-------  198 (300)
T ss_pred             EeCCCCeEEEE--------------EE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-------
Confidence            89876543211              11  122456789999999875543  568999999875322211100       


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-ecCCCeEEEEEecCCeEEEEeecCCce
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHV  387 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (458)
                                                ....+........++| +|++++++. .+.++.+.+||+.+++.+..+. +...
T Consensus       199 --------------------------~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~  250 (300)
T TIGR03866       199 --------------------------IPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR  250 (300)
T ss_pred             --------------------------ccccccccCCccceEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence                                      0000001111345677 999998654 3456789999999888776654 3457


Q ss_pred             eeEEEecCCCCeEEEe-ecCCcEEEecCCcccccccccccccEEEEEEec
Q 012712          388 VNCIEPHPHSTVLASS-GIESDIKILTPNAADRATLPTNIEQVCFSIYSA  436 (458)
Q Consensus       388 v~~~~~s~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~  436 (458)
                      +.+++|+|+|++|+++ +.++.|++||+.+++...........+.++++|
T Consensus       251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            8999999999999876 568999999999998764444456668888775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=2.6e-29  Score=208.36  Aligned_cols=274  Identities=18%  Similarity=0.283  Sum_probs=217.5

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee--cCCCceEEEEEecCCCEEEEecCC
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD--KHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      ..|+..+++.||+ .|.|+|||+..- .-+.                 .+..|.  .-.+.|+++.+.|||+.|++|+.-
T Consensus       426 tIS~~trhVyTgG-kgcVKVWdis~p-g~k~-----------------PvsqLdcl~rdnyiRSckL~pdgrtLivGGea  486 (705)
T KOG0639|consen  426 TISNPTRHVYTGG-KGCVKVWDISQP-GNKS-----------------PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA  486 (705)
T ss_pred             EecCCcceeEecC-CCeEEEeeccCC-CCCC-----------------ccccccccCcccceeeeEecCCCceEEecccc
Confidence            4677888999999 788999999832 1100                 111122  245789999999999999999999


Q ss_pred             CeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           83 RRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      .++.|||+......... +....-..++++.+|  |.+..+++..||.|.|||+.+...+..  +++|++.+.||.++++
T Consensus       487 stlsiWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~Vrq--fqGhtDGascIdis~d  562 (705)
T KOG0639|consen  487 STLSIWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISKD  562 (705)
T ss_pred             ceeeeeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeec--ccCCCCCceeEEecCC
Confidence            99999999876543222 133345678899999  999999999999999999988776655  9999999999999999


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                      | ..|.+|+-|.+|+-||++++..++...           ....|.++..+|. +.++++|-+++.+.+......+    
T Consensus       563 G-tklWTGGlDntvRcWDlregrqlqqhd-----------F~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~----  625 (705)
T KOG0639|consen  563 G-TKLWTGGLDNTVRCWDLREGRQLQQHD-----------FSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPE----  625 (705)
T ss_pred             C-ceeecCCCccceeehhhhhhhhhhhhh-----------hhhhheecccCCC-ccceeeecccCcEEEEecCCcc----
Confidence            9 679999999999999999998766554           4557999999998 7899999999999998876543    


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                                  +.....|+.-|.++.|.+.|+++++.+ |+-+..|...-+..                          
T Consensus       626 ------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--------------------------  667 (705)
T KOG0639|consen  626 ------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--------------------------  667 (705)
T ss_pred             ------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc--------------------------
Confidence                        334455788999999999999999888 44688998766422                          


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                                  +...+  +.. .|.++.. |.|.+|+++|+.|....+|.+
T Consensus       668 ------------iFqsk--E~S-sVlsCDI-S~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  668 ------------IFQSK--ESS-SVLSCDI-SFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ------------eeecc--ccC-cceeeee-ccCceEEEecCCCcceEEEEE
Confidence                        22222  221 4888888 999999999999988888875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.1e-28  Score=199.80  Aligned_cols=290  Identities=11%  Similarity=0.168  Sum_probs=228.1

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeeccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILE  137 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~  137 (458)
                      .++|+++.|+|....|++|+.|++++||.++...  .+..+ .--..+|.+.+|.|  +|. .+++++....+..||+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecC--CCceEEEecccceEEEEeeccc
Confidence            4789999999999999999999999999986432  33333 33467899999999  888 899999999999999988


Q ss_pred             ccceeeeeccccc-cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          138 RGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       138 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      .+......+.++. ..+.....+|++ ++++..+..|.|.+....+++.+..++           ..+.+..++|+.+ +
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~K-----------ieG~v~~~~fsSd-s  356 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFK-----------IEGVVSDFTFSSD-S  356 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheee-----------eccEEeeEEEecC-C
Confidence            8765544455554 456778899999 688999999999999999999988887           4557999999987 6


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGP  295 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~  295 (458)
                      ..|++++.+|.|++||++....              .........-.-++++.++++.+||+|++. -|.|||.++....
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~~--------------~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s  422 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNSC--------------LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS  422 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcce--------------EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence            8888888899999999998753              233333333345678888999999999965 6899997663221


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC--CCeEEEEEec
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIFIWKKK  373 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~--dg~i~iwd~~  373 (458)
                      ..                                .+++..+..-..  .|.++.| +||.+.||.++.  +..+++-.+.
T Consensus       423 ~~--------------------------------PkPik~~dNLtt--~Itsl~F-n~d~qiLAiaS~~~knalrLVHvP  467 (514)
T KOG2055|consen  423 TN--------------------------------PKPIKTVDNLTT--AITSLQF-NHDAQILAIASRVKKNALRLVHVP  467 (514)
T ss_pred             CC--------------------------------CCchhhhhhhhe--eeeeeee-CcchhhhhhhhhccccceEEEecc
Confidence            11                                234444444444  3899998 999999998775  4689999988


Q ss_pred             CCeEEEEeecCC---ceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          374 GGELIRVIEADR---HVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       374 ~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      +......+....   +.|+||+|||.+.+||.|..+|.+.+|.+.
T Consensus       468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            877666664432   458999999999999999999999999863

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1e-28  Score=202.37  Aligned_cols=263  Identities=17%  Similarity=0.202  Sum_probs=197.2

Q ss_pred             CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeE
Q 012712            7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRV   85 (458)
Q Consensus         7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i   85 (458)
                      |.+...+|+++..+.|.|||..+-.-...           .....++..+|.||++.=.+|+|++.. -.|++++.|++|
T Consensus       134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i  202 (422)
T KOG0264|consen  134 PQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI  202 (422)
T ss_pred             CCCCcEEEecCCCCCEEEEEeccCCCccc-----------ccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence            34456688889999999999985332211           000234445789999988899999854 578999999999


Q ss_pred             EEEECCCcce------eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           86 ILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        86 ~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      ++||+.....      ......+|...|..++|+|. +..++++++.|+.+.|||++++.........+|+++++|++|+
T Consensus       203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            9999965432      23334899999999999995 7788999999999999999964434445578899999999999


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      |-+..+||+|+.|++|.+||+|......       ....+  +...|.++.|+|.....|++++.|+.+.+||+..-...
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~l-------h~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e  352 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPL-------HTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE  352 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCc-------eeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence            9988999999999999999999876411       11122  55689999999998899999999999999999765433


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE-EEecCC-cEEEEEccC
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYNDE-FIYLFTQDM  291 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~-~i~i~~~~~  291 (458)
                      +...... .....+.....+|...|..+.|+|+..++ ++.+++ .+.||++..
T Consensus       353 q~~eda~-dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  353 QSPEDAE-DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cChhhhc-cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            2100000 00001123457889999999999998755 455554 699999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.97  E-value=2.5e-28  Score=208.23  Aligned_cols=307  Identities=21%  Similarity=0.269  Sum_probs=216.9

Q ss_pred             EEEEec---CCCEEEEecCCCeEEEEECCCccee-----eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc
Q 012712           66 TVSFNT---DGDILISGSDDRRVILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE  137 (458)
Q Consensus        66 ~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  137 (458)
                      +..|++   ....||.+..||.|.++|.......     ......|.+.|..+.|.|  ....|++++.|.++++||+.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeecc
Confidence            366765   3468999999999999998654322     223368999999999999  889999999999999999999


Q ss_pred             ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--ce-----eeecc----------cCCCCcc
Q 012712          138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--EL-----FTCRP----------IDDRRNY  200 (458)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~-----~~~~~----------~~~~~~~  200 (458)
                      .+......+.+|...+.+++|.|.++..|++|+.||.|.|||++....-  ..     ...+.          .......
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            8887766688999999999999999999999999999999999754310  00     00000          0000111


Q ss_pred             ee----ecceEEEEECCCCCcEEEEecC-CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712          201 MT----VVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL  275 (458)
Q Consensus       201 ~~----~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  275 (458)
                      ..    ...|+.+.| .| ...|++++. |+.|++||++........+-   ....... ........+.++.....|.+
T Consensus       212 A~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep---~~~~~~~-t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQEP---RGSDKYP-THSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccCC---CcccCcc-CcccceeeeEEEEecCCCCe
Confidence            12    223445555 44 478888877 99999999998764433211   1000000 00112345777877777765


Q ss_pred             -EEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712          276 -LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK  354 (458)
Q Consensus       276 -l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~  354 (458)
                       +|++.|+.|+.|++..-.                                    ..+...+.++.....-..-. .+||
T Consensus       286 L~AsCtD~sIy~ynm~s~s------------------------------------~sP~~~~sg~~~~sf~vks~-lSpd  328 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLS------------------------------------ISPVAEFSGKLNSSFYVKSE-LSPD  328 (720)
T ss_pred             EEEEecCCcEEEEeccccC------------------------------------cCchhhccCcccceeeeeee-cCCC
Confidence             566668899999998632                                    22334444444432222222 4999


Q ss_pred             CcEEEEecCCCeEEEEEecCCe-EEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcc
Q 012712          355 CEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       355 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~  417 (458)
                      +.+|++|+.|...++|.+.+.+ ....+.+|...|++++|.|.. .-++++++|.+++||++..+
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            9999999999999999998764 456678999999999998743 34677799999999999764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.8e-28  Score=189.79  Aligned_cols=295  Identities=16%  Similarity=0.188  Sum_probs=217.5

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET  143 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  143 (458)
                      -.|+.|++.|.+||+|..||.|.|||+.+...- ..+.+|..+|.+++||+  ||+.|+|++.|..|.+||+..+..+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-r~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-RMLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh-hhhhccccceeEEEecC--CCCEeeeecCCceeEEEeccCCCceeE
Confidence            779999999999999999999999999998864 44489999999999999  999999999999999999999987765


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      ..   ...+|+.+.|+|...+.+++.-.+..-.+.++..+... .+.......     ......+..|.+. |+++++|.
T Consensus       103 ir---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~d-----ln~sas~~~fdr~-g~yIitGt  172 (405)
T KOG1273|consen  103 IR---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGD-----LNSSASHGVFDRR-GKYIITGT  172 (405)
T ss_pred             EE---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccc-----cccccccccccCC-CCEEEEec
Confidence            33   56899999999987666666655555555555543211 111100000     1112234468886 79999999


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCC
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~  302 (458)
                      ..|.+.++|..+.+......              ......|..+.++..|++|+..+.+ .|+.|++..-.....     
T Consensus       173 sKGkllv~~a~t~e~vas~r--------------its~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r-----  233 (405)
T KOG1273|consen  173 SKGKLLVYDAETLECVASFR--------------ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR-----  233 (405)
T ss_pred             CcceEEEEecchheeeeeee--------------echheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCc-----
Confidence            99999999999987544311              1113578899999999999988755 699999874211100     


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC-CeEEEEEecCCeEEEEe
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVI  381 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~  381 (458)
                                              .....+.++++.-.+...-.+++| |.+|.|++.++.. ..++||....|.+++.+
T Consensus       234 ------------------------~~e~e~~~K~qDvVNk~~Wk~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  234 ------------------------DGEVEPEHKLQDVVNKLQWKKCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             ------------------------cCCcChhHHHHHHHhhhhhhheee-cCCccEEEeccccceeEEEEecCCcceeeee
Confidence                                    000112233333223223456777 9999999887744 68999999999999999


Q ss_pred             ecCC-ceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          382 EADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       382 ~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      .|.. .....+.|+|-...+++- ..|.++||....
T Consensus       289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             cCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence            9877 567899999999988887 689999997653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.3e-28  Score=200.90  Aligned_cols=260  Identities=18%  Similarity=0.266  Sum_probs=205.8

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc---
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE---  137 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~---  137 (458)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+ .+|-..|+++.|+-  |+.+|+||+.||.|.+|.+..   
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeecc
Confidence            578999999999999999889999999999999997777 89999999999999  999999999999999998743   


Q ss_pred             ----ccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          138 ----RGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       138 ----~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                          ....+...+..|+-+|+++...+.+ ...+++++.|.++++||+..+..+..+.           ....+.+++.+
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-----------fp~si~av~lD  226 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-----------FPSSIKAVALD  226 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-----------cCCcceeEEEc
Confidence                2233445588999999999998764 3579999999999999999998887776           44478999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712          213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG  292 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~  292 (458)
                      |. +..+++|+.+|.|.+.++.....                     ....+..=.++++                    
T Consensus       227 pa-e~~~yiGt~~G~I~~~~~~~~~~---------------------~~~~v~~k~~~~~--------------------  264 (476)
T KOG0646|consen  227 PA-ERVVYIGTEEGKIFQNLLFKLSG---------------------QSAGVNQKGRHEE--------------------  264 (476)
T ss_pred             cc-ccEEEecCCcceEEeeehhcCCc---------------------ccccccccccccc--------------------
Confidence            97 78999999999999988865320                     0111111111111                    


Q ss_pred             CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                                                           ......+.+|.+...|+|++. +.||..|++|+.||.+.|||+
T Consensus       265 -------------------------------------~t~~~~~~Gh~~~~~ITcLai-s~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  265 -------------------------------------NTQINVLVGHENESAITCLAI-STDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             -------------------------------------cceeeeeccccCCcceeEEEE-ecCccEEEeeCCCCCEEEEec
Confidence                                                 234556777877556999998 999999999999999999999


Q ss_pred             cCCeEEEEeecCCceeeEEEecCCCCeEEEe-ecCCcEEEecC
Q 012712          373 KGGELIRVIEADRHVVNCIEPHPHSTVLASS-GIESDIKILTP  414 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iw~~  414 (458)
                      .+.++++++....++|+.+.+.|-.+-...+ .....+-.|++
T Consensus       307 ~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  307 YSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             chHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence            9999999988777899999997754433332 22233444444

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.3e-27  Score=210.82  Aligned_cols=286  Identities=13%  Similarity=0.195  Sum_probs=222.0

Q ss_pred             ecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc-ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712           58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL  136 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~  136 (458)
                      .+|+..-+.++|.|+|.+|++++.||.|++|+.... +....+ ..+...|.+++-    .+.+|++++.+++|.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~----~s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIAC----YSNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEee----cccceEEeeccceEEEeeCC
Confidence            479999999999999999999999999999998766 333333 337788888877    56699999999999999998


Q ss_pred             cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      +++.-..  +...+-++++++++-+| .+++.|+.|-.|++.++........+..          +..+|.++.|+|. +
T Consensus        85 s~~~~~i--L~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrg----------h~apVl~l~~~p~-~  150 (933)
T KOG1274|consen   85 SGEEDTI--LARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRG----------HDAPVLQLSYDPK-G  150 (933)
T ss_pred             CCCccce--eeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecc----------cCCceeeeeEcCC-C
Confidence            8765433  56677899999999999 7899999999999999998887777654          5668999999997 7


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecCCcEEEEEccCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGP  295 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~~  295 (458)
                      ++||+.+.||.|++||+.++.....+..-.+..       .......+..++|+|+ |++++.+.++.|++|+....   
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-------~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w---  220 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-------EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW---  220 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCccc-------cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc---
Confidence            999999999999999999887654432211111       1111456788999999 56777777999999998874   


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                                                         .....+........+..+.| +|+|+|||+++.||.|.|||.++.
T Consensus       221 -----------------------------------e~~f~Lr~~~~ss~~~~~~w-sPnG~YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  221 -----------------------------------ELQFKLRDKLSSSKFSDLQW-SPNGKYIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             -----------------------------------eeheeecccccccceEEEEE-cCCCcEEeeeccCCcEEEEecccc
Confidence                                               33444444443334778888 999999999999999999999873


Q ss_pred             eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       376 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      +.    ......|.+++|.|+..-+-.-...|...+|
T Consensus       265 ~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  265 ER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             hh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            22    2234579999999998866544444444444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=5.8e-28  Score=204.54  Aligned_cols=315  Identities=14%  Similarity=0.173  Sum_probs=233.8

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      .+...+.||++.|++|+..|.|.+||+|+.||+|+||.+.++.++..+  ...+.|.+++|+|..+-..||++-... +.
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~  467 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLSDLCVLAVAVGEC-VL  467 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCCCceeEEEEecCc-eE
Confidence            345567899999999999999999999999999999999999999887  356799999999954555566665544 55


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEe----cCCCeEEEEeCCCCCcc-----ceeeecccCCCCccee
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC----GEDGLVQHFDLRTGAAT-----ELFTCRPIDDRRNYMT  202 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~  202 (458)
                      +-+..-+..+..    +           +.. .+|+++    ..++.+..|.-......     ..+.           +
T Consensus       468 ivnp~~G~~~e~----~-----------~t~-ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----------~  520 (733)
T KOG0650|consen  468 IVNPIFGDRLEV----G-----------PTK-ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK-----------H  520 (733)
T ss_pred             EeCccccchhhh----c-----------chh-hhhhcCCCccCCcccceeechhhhhhhccceEEEEe-----------c
Confidence            555433322111    0           000 111211    12445667754322111     1122           4


Q ss_pred             ecceEEEEECCCCCcEEEEecCC---CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                      ...|..+.|+.. |.+|++...+   ..|.|+++...+..               ..+....+.+.++.|+|...+|+.+
T Consensus       521 ~k~i~~vtWHrk-GDYlatV~~~~~~~~VliHQLSK~~sQ---------------~PF~kskG~vq~v~FHPs~p~lfVa  584 (733)
T KOG0650|consen  521 PKSIRQVTWHRK-GDYLATVMPDSGNKSVLIHQLSKRKSQ---------------SPFRKSKGLVQRVKFHPSKPYLFVA  584 (733)
T ss_pred             CCccceeeeecC-CceEEEeccCCCcceEEEEeccccccc---------------CchhhcCCceeEEEecCCCceEEEE
Confidence            557999999998 7888886543   46889988766421               2223346789999999999999999


Q ss_pred             cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712          280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV  359 (458)
Q Consensus       280 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~  359 (458)
                      +...|++||+..                                      ...++.+.....  .|..++. +|.|.-|+
T Consensus       585 Tq~~vRiYdL~k--------------------------------------qelvKkL~tg~k--wiS~msi-hp~GDnli  623 (733)
T KOG0650|consen  585 TQRSVRIYDLSK--------------------------------------QELVKKLLTGSK--WISSMSI-HPNGDNLI  623 (733)
T ss_pred             eccceEEEehhH--------------------------------------HHHHHHHhcCCe--eeeeeee-cCCCCeEE
Confidence            999999999876                                      233444443333  4788888 99999999


Q ss_pred             EecCCCeEEEEEecCC-eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC-------ccc---cccccccccc
Q 012712          360 SGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN-------AAD---RATLPTNIEQ  428 (458)
Q Consensus       360 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~-------~~~---~~~~~~~~~~  428 (458)
                      .|+.|+.+..||+.-. ++.++++-|...+++++|++.-.++++|+.||++.|+.-.       +..   +..+.+|...
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~  703 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT  703 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence            9999999999999744 6778899999999999999999999999999999998532       111   2245666655


Q ss_pred             ----EEEEEEecCCcEEEeeecCCceEEE
Q 012712          429 ----VCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       429 ----v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                          |..+.|+|.-.||++++.||+|++|
T Consensus       704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccceEeecccCCCceEEecCCCceEEee
Confidence                8999999999999999999999998

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=4.1e-27  Score=201.11  Aligned_cols=113  Identities=19%  Similarity=0.275  Sum_probs=99.7

Q ss_pred             ceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCC-------eEEEEeecCCceeeEEEecCC-CCeEEEeecCCcEEE
Q 012712          341 NCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGG-------ELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKI  411 (458)
Q Consensus       341 ~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i  411 (458)
                      +...|+.+.| +| |.+.||.+++||.|++|.+..+       ++...+.+|...|+++.|+|- ...|++++.|.+|++
T Consensus       626 Ngt~vtDl~W-dPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l  704 (1012)
T KOG1445|consen  626 NGTLVTDLHW-DPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL  704 (1012)
T ss_pred             cCceeeeccc-CCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence            3335899998 66 6789999999999999998654       455778899999999999995 468999999999999


Q ss_pred             ecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          412 LTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       412 w~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ||+.+.... .+.+|.+.|..++|||||+.+|+.+.||+|++|+
T Consensus       705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            999988654 8999999999999999999999999999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=206.38  Aligned_cols=284  Identities=13%  Similarity=0.192  Sum_probs=220.1

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD  179 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  179 (458)
                      ..|....+.++|.|  +|+.|++++.||.|++|+..... ....  +.-+...|.+++...   ..|++++.+++|.+|.
T Consensus        10 yaht~G~t~i~~d~--~gefi~tcgsdg~ir~~~~~sd~e~P~t--i~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP--DGEFICTCGSDGDIRKWKTNSDEEEPET--IDISGELVSSIACYS---NHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hhccCceEEEEEcC--CCCEEEEecCCCceEEeecCCcccCCch--hhccCceeEEEeecc---cceEEeeccceEEEee
Confidence            37889999999999  99999999999999999987763 3332  333777888887765   3689999999999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD  259 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (458)
                      +..++.-..+..          ...++.+++++.+ |++++.|+.|-.|++.++.....               .....+
T Consensus        83 fps~~~~~iL~R----------ftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~---------------~~~lrg  136 (933)
T KOG1274|consen   83 FPSGEEDTILAR----------FTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQ---------------EKVLRG  136 (933)
T ss_pred             CCCCCccceeee----------eeccceEEEEecC-CcEEEeecCceeEEEEeccccch---------------heeecc
Confidence            988876544432          3347899999997 79999999999999999887642               455677


Q ss_pred             cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                      |.++|.++.|+|++.+||+.+ +|.+++|++.++.....+..                                +..-..
T Consensus       137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~--------------------------------v~k~n~  184 (933)
T KOG1274|consen  137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG--------------------------------VDKDNE  184 (933)
T ss_pred             cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc--------------------------------CCcccc
Confidence            899999999999999999887 78999999998654443321                                000011


Q ss_pred             ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      ......+..++| +|+|..++....|+.|.+|+...++....++.  +...+..++|+|+|+|||+++.||.|.|||.++
T Consensus       185 ~~~s~i~~~~aW-~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  185 FILSRICTRLAW-HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccccceeeeeee-cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            111113677888 99988888888899999999999999888864  444599999999999999999999999999998


Q ss_pred             ccccccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712          417 ADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       417 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      .+.   ......|++++|-|+..-+-.-..-|..-+|
T Consensus       264 ~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  264 HER---HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             chh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            433   3334569999999998655433344443333

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.6e-28  Score=209.18  Aligned_cols=290  Identities=16%  Similarity=0.225  Sum_probs=220.3

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcce----eeeec--cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      ....+|+..++-..++.++. ..++||.+.....    ...+.  ..-.-.+..+.|... +.++|||++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~-~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL-YSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccc-hhhhheeecCCCcEEEEec
Confidence            45667777888888888876 4688887754322    11110  011124556788853 7889999999999999999


Q ss_pred             ccc-cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712          136 LER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       136 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      ... +......+..|...++++.|++..+++|++|+.||.|++||++..+....+..          ....|..+.|+|.
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----------nSESiRDV~fsp~  187 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----------NSESIRDVKFSPG  187 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----------cchhhhceeeccC
Confidence            762 12222348899999999999999999999999999999999999888777764          3447999999998


Q ss_pred             CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCC
Q 012712          215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGL  293 (458)
Q Consensus       215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~  293 (458)
                      .++.|+++...|.+++||+|....              ....+..|.++|.++.|+|++.+||+|+.| .|+||++.+.+
T Consensus       188 ~~~~F~s~~dsG~lqlWDlRqp~r--------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  188 YGNKFASIHDSGYLQLWDLRQPDR--------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             CCceEEEecCCceEEEeeccCchh--------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            889999999999999999998652              234566789999999999999999999955 79999998642


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE-EEEec--CCCeEEEE
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY-VVSGS--DCGRIFIW  370 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-l~~~~--~dg~i~iw  370 (458)
                      ..                                    ....+  +... .+.++.| -|...+ ||+++  .|-.|+||
T Consensus       254 ~~------------------------------------~~~tI--nTia-pv~rVkW-RP~~~~hLAtcsmv~dtsV~VW  293 (839)
T KOG0269|consen  254 AK------------------------------------PKHTI--NTIA-PVGRVKW-RPARSYHLATCSMVVDTSVHVW  293 (839)
T ss_pred             cc------------------------------------ceeEE--eecc-eeeeeee-ccCccchhhhhhccccceEEEE
Confidence            21                                    11111  1111 4889998 887765 45443  46799999


Q ss_pred             EecCC-eEEEEeecCCceeeEEEecC-CCCeEEEeecCCcEEEecCCcc
Q 012712          371 KKKGG-ELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       371 d~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      |+... -+..++..|...++.++|.. |...|.+++.||+|..-.+++.
T Consensus       294 DvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  294 DVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            99643 45678889999999999965 4567889999999877666544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.9e-27  Score=191.92  Aligned_cols=296  Identities=15%  Similarity=0.175  Sum_probs=220.9

Q ss_pred             EecCC-CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeeccccccceEE
Q 012712           78 SGSDD-RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHK  155 (458)
Q Consensus        78 s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~  155 (458)
                      +++.| .++.+||+++|....++..+....-.++..-   .+.+++++.. ...+.+|.+........  ..--.+++.+
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q--~~v~Pg~v~a   86 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQ--YIVLPGPVHA   86 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhh--hcccccceee
Confidence            34444 4599999999999888833212222222222   4456666554 45789999876554432  2234578999


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      ++-+|.| ++|+.|+..|.|++|.+.+|..+..+..          |-..|+|+.|+.| +.+|++|+.||.|.+|++..
T Consensus        87 l~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~a----------HYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   87 LASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSA----------HYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             eecCCCc-eEEEeecccCcEEEEEeccccHHHHHHh----------hccceeEEEEeCC-CcEEEecCCCccEEEEEEEe
Confidence            9999999 7888888999999999999999887753          3447999999997 78999999999999999865


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCC-cEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEM  312 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
                      .-....      -....+...+.+|.-+|+.+...+.|  ..|++.+.| ++++||+..+.                   
T Consensus       155 lv~a~~------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-------------------  209 (476)
T KOG0646|consen  155 LVSADN------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-------------------  209 (476)
T ss_pred             eccccc------CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-------------------
Confidence            321111      00224566778899999999888764  477777755 89999998753                   


Q ss_pred             CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC----------------e
Q 012712          313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----------------E  376 (458)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------------~  376 (458)
                                         .+..+.-   +..+.+++. +|-++.+++|+.+|.|.+.++...                .
T Consensus       210 -------------------LLlti~f---p~si~av~l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t  266 (476)
T KOG0646|consen  210 -------------------LLLTITF---PSSIKAVAL-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT  266 (476)
T ss_pred             -------------------eeEEEec---CCcceeEEE-cccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence                               2222222   224888998 999999999999999999887432                3


Q ss_pred             EEEEeecCCc--eeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc-ccccEEEEEEecCC
Q 012712          377 LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-NIEQVCFSIYSADY  438 (458)
Q Consensus       377 ~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~v~~~~~s~d~  438 (458)
                      .+..+.+|.+  .|++++.+-||.+|++|+.||.+.|||+.+.++++... ..++|+.+.+.|=.
T Consensus       267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence            4456778988  99999999999999999999999999999998886555 67789988885543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.96  E-value=4.8e-26  Score=195.76  Aligned_cols=273  Identities=18%  Similarity=0.226  Sum_probs=206.5

Q ss_pred             CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      |.+++|-|||..|+.+. +..+.|||.+.|.++                     +++++|++.|.|++|+.||+.+|+|+
T Consensus        15 i~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll---------------------qtLKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL---------------------QPLKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             hheeEECCCCceEEEec-CCEEEEEeCCCcccc---------------------cccccccceEEEEEEccCCceeccCC
Confidence            56889999999988888 456889999999877                     45999999999999999999999999


Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      .|..|.+|.-+- +-+..+  .|...|.|+.|.|  -...|++++-+ ..-+|....... ..   ......+.+++|..
T Consensus        73 aDK~VI~W~~kl-EG~LkY--SH~D~IQCMsFNP--~~h~LasCsLs-dFglWS~~qK~V-~K---~kss~R~~~CsWtn  142 (1081)
T KOG1538|consen   73 ADKSVIIWTSKL-EGILKY--SHNDAIQCMSFNP--ITHQLASCSLS-DFGLWSPEQKSV-SK---HKSSSRIICCSWTN  142 (1081)
T ss_pred             CceeEEEecccc-cceeee--ccCCeeeEeecCc--hHHHhhhcchh-hccccChhhhhH-Hh---hhhheeEEEeeecC
Confidence            999999998543 333444  7999999999999  88899999873 567898654332 21   12345788999999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC----cEEEEecCCCeEEEEecCCC
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA----NLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~i~i~d~~~~  236 (458)
                      || ++|+.|-.+|+|.+-+-. ++....+..+..       ...+|.+++|+|..+    ..+++.....++.+|.+...
T Consensus       143 DG-qylalG~~nGTIsiRNk~-gEek~~I~Rpgg-------~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~  213 (1081)
T KOG1538|consen  143 DG-QYLALGMFNGTISIRNKN-GEEKVKIERPGG-------SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK  213 (1081)
T ss_pred             CC-cEEEEeccCceEEeecCC-CCcceEEeCCCC-------CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence            99 789999999999998643 333333332111       456899999999632    57888888888888888654


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD  315 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (458)
                      ...+.                ..-.-...|+.+.++|+++..|+ ++.+.+|.-+.                        
T Consensus       214 ~Igk~----------------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G------------------------  253 (1081)
T KOG1538|consen  214 QIGKD----------------RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG------------------------  253 (1081)
T ss_pred             eeccc----------------ccCCCCchhheeccCCcEEEEccCCCceEEEeecC------------------------
Confidence            32211                01123457899999999888776 55788886542                        


Q ss_pred             CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                                     ....++.....  +|..++. .|++++++.|+.||+|..|++
T Consensus       254 ---------------vrLGTvg~~D~--WIWtV~~-~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  254 ---------------VRLGTVGEQDS--WIWTVQA-KPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ---------------eEEeeccccce--eEEEEEE-ccCCceEEEEEccCeeehhhh
Confidence                           22233333333  5899998 999999999999999999987

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1e-27  Score=209.00  Aligned_cols=239  Identities=20%  Similarity=0.301  Sum_probs=192.7

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC-CCEEEEecC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSD   81 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~   81 (458)
                      ..+...+..+|||++..|.|-+||+..-  +                +-+++..|..|+..|+++.|++- -.+|++||.
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~--~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ  154 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKS--I----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQ  154 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCcc--c----------------cchhhhHhhhhccceeeeeeccCCccEEEecCC
Confidence            3445566789999999999999999841  1                11233468899999999999984 478999999


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      ||+|++||++.......+ .+..+.|..+.|+|. .+..++++...|.+++||++....... .+..|.++|.++.|+|+
T Consensus       155 Dg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~-k~~AH~GpV~c~nwhPn  231 (839)
T KOG0269|consen  155 DGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEK-KLTAHNGPVLCLNWHPN  231 (839)
T ss_pred             CceEEEEeeecccccccc-cccchhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHH-HhhcccCceEEEeecCC
Confidence            999999999988887777 578889999999995 678999999999999999998765443 38899999999999997


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCCCccC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWD  239 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~  239 (458)
                      + .+|++|+.|+.|+|||+.+.+........         ...++.++.|-|.....|++++  .|-.|+|||++..-  
T Consensus       232 r-~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--  299 (839)
T KOG0269|consen  232 R-EWLATGGRDKMVKIWDMTDSRAKPKHTIN---------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--  299 (839)
T ss_pred             C-ceeeecCCCccEEEEeccCCCccceeEEe---------ecceeeeeeeccCccchhhhhhccccceEEEEeecccc--
Confidence            7 79999999999999999877665554433         3457899999999888888876  57789999998643  


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecC-CcEEE
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND-EFIYL  286 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-~~i~i  286 (458)
                                  .|......|...++.++|.. |...+.+++. +.+..
T Consensus       300 ------------IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  300 ------------IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             ------------ccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence                        45667778889999999976 3346666663 34433

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.95  E-value=3.3e-26  Score=179.68  Aligned_cols=287  Identities=20%  Similarity=0.302  Sum_probs=212.3

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcc------------eeeeeccCCCcceeEEEEccC-----CCCeEEEEE
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTER------------VKLSFHSGHNDNVFQAKIMPF-----TDDRSIVTC  124 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~s~  124 (458)
                      .....+.|||||..|++-+.|..+.+|++....            ....+.......|+..+|-+.     .+..++++.
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            345578999999999999999999999974211            011111123456777787631     277889999


Q ss_pred             cCCCcEEEeecccccceeeeeccccccc---eEEEEEcCCCCeEEEEecCCCeEEEEeC-CCCCccceeeecccCCCCcc
Q 012712          125 AADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPHVFYTCGEDGLVQHFDL-RTGAATELFTCRPIDDRRNY  200 (458)
Q Consensus       125 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~  200 (458)
                      +.+.-|++||..+++.........|...   ..+++|+|||. .|+ ++....|+++|+ +.|.....+..... ...+ 
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~c~vy~t~~~-~k~g-  205 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRDCPVYTTVTK-GKFG-  205 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCCCcchhhhhc-cccc-
Confidence            9999999999999987655334445544   46899999994 445 456789999999 66654433322111 0111 


Q ss_pred             eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712          201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                       ..+-+.+++|+|.+...+++|+....+-||.-....               +..+..+|.+.|+.+.|.++|..|.+|+
T Consensus       206 -q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------pl~llggh~gGvThL~~~edGn~lfsGa  269 (406)
T KOG2919|consen  206 -QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------PLQLLGGHGGGVTHLQWCEDGNKLFSGA  269 (406)
T ss_pred             -ccceeeeeeccCCCCcceeeecccceeeeEecCCCC---------------ceeeecccCCCeeeEEeccCcCeecccc
Confidence             345688999999888899999999998888776654               3456668999999999999999999998


Q ss_pred             --CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE-ecCCCcE
Q 012712          281 --DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEY  357 (458)
Q Consensus       281 --~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~~  357 (458)
                        ++.|..||++..                                     ..++..+..|... +-..+.| ..|++++
T Consensus       270 Rk~dkIl~WDiR~~-------------------------------------~~pv~~L~rhv~~-TNQRI~FDld~~~~~  311 (406)
T KOG2919|consen  270 RKDDKILCWDIRYS-------------------------------------RDPVYALERHVGD-TNQRILFDLDPKGEI  311 (406)
T ss_pred             cCCCeEEEEeehhc-------------------------------------cchhhhhhhhccC-ccceEEEecCCCCce
Confidence              568999999874                                     3344455555442 1122323 3789999


Q ss_pred             EEEecCCCeEEEEEecC-CeEEEEeecCCceeeEEEecCCCCeEEEeecC
Q 012712          358 VVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGIE  406 (458)
Q Consensus       358 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  406 (458)
                      |++|+.||.|++||+++ +..+..+..|...++.++++|--.++|+++..
T Consensus       312 LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  312 LASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             eeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            99999999999999988 77788888899999999999998888888744

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=9.5e-26  Score=174.89  Aligned_cols=302  Identities=17%  Similarity=0.201  Sum_probs=211.1

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEecCCCeEEE
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVIL   87 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~i   87 (458)
                      .++++++|+.||.|.+||++...--..  +.+....    +-.--...-.+|+-.|.++.|-| |..++.+++.|.+++|
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~----~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKV  128 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKH----KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKV  128 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhh--ccceehe----eeeccccCCccceeeeeeeEEeeecCceeecccccceEEE
Confidence            478899999999999999984321100  0000000    00001122357889999999999 6678899999999999


Q ss_pred             EECCCcceeeeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712           88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF  166 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  166 (458)
                      ||..+.+....|  ...+.|++-+++|... -.++|+|..+-.|++.|+.++.....  +.+|...|.++.|+|....+|
T Consensus       129 WDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~e~vL  204 (397)
T KOG4283|consen  129 WDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSSEWVL  204 (397)
T ss_pred             eecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--eccccCceEEEEeccCceeEE
Confidence            999998887777  4578899999998433 34677788888999999999887655  999999999999999998999


Q ss_pred             EEecCCCeEEEEeCCCC-Cccceeeeccc---CCC-CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712          167 YTCGEDGLVQHFDLRTG-AATELFTCRPI---DDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                      ++|+.||.|++||++.- .+...+..+..   +.. ....+.+.+..++|..+ +.++++++.|..+++|+..+++....
T Consensus       205 atgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~ntl~  283 (397)
T KOG4283|consen  205 ATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGRNTLR  283 (397)
T ss_pred             EecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCccccc
Confidence            99999999999999865 33333322211   111 12336678999999998 78999999999999999988763221


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                       ++++.    +    .......-.-+. +-+ +.++..-.++.+.++++-.                             
T Consensus       284 -~~g~~----~----~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~s-----------------------------  324 (397)
T KOG4283|consen  284 -EFGPI----I----HNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLE-----------------------------  324 (397)
T ss_pred             -ccccc----c----ccccccceEEEe-ecccceEEEEecCCeEEEEEccC-----------------------------
Confidence             00000    0    000000111122 222 2333333456788887766                             


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                               +..++.+..|..  .+.+.++ .|+=+...+|..|+.|..|-.
T Consensus       325 ---------gs~ir~l~~h~k--~i~c~~~-~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  325 ---------GSFVRRLSTHLK--RINCAAY-RPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ---------ceEEEeeecccc--eeeEEee-cCchhhhhccccCCccccccc
Confidence                     445667777743  4777777 999999999999999999976

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-26  Score=178.65  Aligned_cols=289  Identities=15%  Similarity=0.228  Sum_probs=210.2

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR   83 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   83 (458)
                      +.|++-|.+||+|+.||.|.|||+.|-..-                     +.+.+|-.+|++++||+||+.|+|+|.|.
T Consensus        29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---------------------r~lsaH~~pi~sl~WS~dgr~LltsS~D~   87 (405)
T KOG1273|consen   29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIA---------------------RMLSAHVRPITSLCWSRDGRKLLTSSRDW   87 (405)
T ss_pred             EEeccCcceeeeeccCCcEEEEEccccchh---------------------hhhhccccceeEEEecCCCCEeeeecCCc
Confidence            568999999999999999999999975533                     45889999999999999999999999999


Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc---ccccceEEEEEcC
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG---KHQGRAHKLAIEP  160 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~~~  160 (458)
                      .|++||+..|.+++++  ....+|+...|+|......+++ -.+..-.+-++..+...... ..   .-.....+..|.+
T Consensus        88 si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp-~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   88 SIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLP-KDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             eeEEEeccCCCceeEE--EccCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeecc-CCCccccccccccccccC
Confidence            9999999999998887  5678999999999533333443 33344455555443221110 00   0111223346888


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG  240 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  240 (458)
                      .| +++++|...|.+.++|..+.+++..++...         ...|..+.++.. +..|+.-+.|+.||.|+++.....+
T Consensus       164 ~g-~yIitGtsKGkllv~~a~t~e~vas~rits---------~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~  232 (405)
T KOG1273|consen  164 RG-KYIITGTSKGKLLVYDAETLECVASFRITS---------VQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEG  232 (405)
T ss_pred             CC-CEEEEecCcceEEEEecchheeeeeeeech---------heeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccC
Confidence            88 789999999999999999999888776532         236888899886 7899999999999999987432111


Q ss_pred             CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712          241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS  318 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (458)
                      ......|.  .....+.  ....-.+++|+.+|.++++++..  .+++|....                           
T Consensus       233 r~~e~e~~--~K~qDvV--Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~---------------------------  281 (405)
T KOG1273|consen  233 RDGEVEPE--HKLQDVV--NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI---------------------------  281 (405)
T ss_pred             ccCCcChh--HHHHHHH--hhhhhhheeecCCccEEEeccccceeEEEEecCC---------------------------
Confidence            10000000  0000001  12344678899999999988844  699999887                           


Q ss_pred             ccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                                 +..++.+.|..+. ....+.| +|-...+++- ..|.+++|...
T Consensus       282 -----------GsLVKILhG~kgE-~l~DV~w-hp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  282 -----------GSLVKILHGTKGE-ELLDVNW-HPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             -----------cceeeeecCCchh-heeeccc-ccceeeeeec-cCCceEEEEee
Confidence                       4567777777754 3677888 8887788877 68999999864

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-24  Score=193.58  Aligned_cols=381  Identities=15%  Similarity=0.191  Sum_probs=265.1

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC---CEEEEec
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGS   80 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~   80 (458)
                      +.|++|++.++... +..|.||...||+++.                     .+.+|..++..+.+.|..   .++.+++
T Consensus        22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~s   79 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-GNFVKVYSTATGECIT---------------------SLEDHTAPLTSVIVLPSSENANYLIVCS   79 (792)
T ss_pred             cccccCCcEEEEee-CCEEEEEecchHhhhh---------------------hcccccCccceeeecCCCccceEEEEEe
Confidence            56899999998887 6689999999999884                     489999999999998854   4778999


Q ss_pred             CCCeEEEEECCCcceeeee-------------------------------------------------------------
Q 012712           81 DDRRVILWDWKTERVKLSF-------------------------------------------------------------   99 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~-------------------------------------------------------------   99 (458)
                      .||.|++||...++.+..+                                                             
T Consensus        80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~  159 (792)
T KOG1963|consen   80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE  159 (792)
T ss_pred             cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence            9999999998765332111                                                             


Q ss_pred             -----------------------------------------ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-
Q 012712          100 -----------------------------------------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-  137 (458)
Q Consensus       100 -----------------------------------------~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-  137 (458)
                                                               ...|.-.+++.+++|  .++++|++..||.|.+|.--. 
T Consensus       160 ~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~  237 (792)
T KOG1963|consen  160 HQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGS  237 (792)
T ss_pred             hcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEecccc
Confidence                                                     001333467889999  999999999999999997543 


Q ss_pred             -ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          138 -RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       138 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                       +.......+.=|..+|.+++|+++| .+|++|+.+|.+.+|.+.+++. +.+..          -..+|..+.++|| +
T Consensus       238 ~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-qfLPR----------Lgs~I~~i~vS~d-s  304 (792)
T KOG1963|consen  238 SDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-QFLPR----------LGSPILHIVVSPD-S  304 (792)
T ss_pred             ccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-ccccc----------cCCeeEEEEEcCC-C
Confidence             3333333466688999999999999 6899999999999999999983 22221          3457999999998 6


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecCCcEEEEEccCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGP  295 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~~  295 (458)
                      .+.+....|+.|.+....+........--.+.    .........+-.+.++++|. +..+..+..+.+.+||+.+....
T Consensus       305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~----~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKPP----TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI  380 (792)
T ss_pred             CeEEEEecCceEEEEeccchhhhhhccCccCC----CccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence            78888888999999988766543332211111    01112223456778889994 44455555779999999886544


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc-cceeeeeEEEEecCCCcEEEEec--------CC--
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGS--------DC--  364 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~l~~~~--------~d--  364 (458)
                      ..+.....                              ....+. .....+++++. +..|.+++++-        .|  
T Consensus       381 ~~~~v~~~------------------------------n~~~~~~n~~v~itav~~-~~~gs~maT~E~~~d~~~~~~~e  429 (792)
T KOG1963|consen  381 YKLQVCDE------------------------------NYSDGDVNIQVGITAVAR-SRFGSWMATLEARIDKFNFFDGE  429 (792)
T ss_pred             eeEEEEee------------------------------cccCCcceeEEeeeeehh-hccceEEEEeeeeehhhhccCce
Confidence            33210000                              000001 11123677776 77799998863        23  


Q ss_pred             CeEEEEEecCCeE----EEE-eecCCceeeEEEec-CCCC-eEEEeecCCcEEEecCCccc----------ccc-ccccc
Q 012712          365 GRIFIWKKKGGEL----IRV-IEADRHVVNCIEPH-PHST-VLASSGIESDIKILTPNAAD----------RAT-LPTNI  426 (458)
Q Consensus       365 g~i~iwd~~~~~~----~~~-~~~~~~~v~~~~~s-~~~~-~l~s~~~d~~i~iw~~~~~~----------~~~-~~~~~  426 (458)
                      -.+++|-......    ... ...|...+...++. |... ..++++.||.++||-+.+.+          +.. -.-|.
T Consensus       430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k  509 (792)
T KOG1963|consen  430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK  509 (792)
T ss_pred             EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc
Confidence            3578897654332    222 24577655554443 4333 89999999999999884321          111 11366


Q ss_pred             ccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712          427 EQVCFSIYSADYWWSKSQNFSCSILLFEWLV  457 (458)
Q Consensus       427 ~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~  457 (458)
                      .++++++||.||..| +.+.|++|.+||+..
T Consensus       510 ~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  510 TPITALCFSQDGSLL-AVSFDDTITIWDYDT  539 (792)
T ss_pred             CcccchhhcCCCcEE-EEecCCEEEEecCCC
Confidence            779999999999777 557888999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=6e-26  Score=186.30  Aligned_cols=305  Identities=18%  Similarity=0.242  Sum_probs=218.4

Q ss_pred             eeeeEeecCCCceEEEEEecCC--CEEEEecCCCeEEEEECCCcce----eeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      ......+-|.++|++++|+|..  +++|+|+.-|+|-+||+.+.+.    +..+ ..|..+|.++.|+|. +...+++.+
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~-n~s~i~ssS  254 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPA-NTSQIYSSS  254 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCC-Chhheeeec
Confidence            4556677899999999999955  5888999999999999953322    2333 789999999999994 667899999


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCcceeec
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVV  204 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~  204 (458)
                      .||+|++-|++.........+......+..+.|+.+.+ .++.+..=|...+||++++.. ...+..          +..
T Consensus       255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~l----------h~k  323 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRL----------HKK  323 (498)
T ss_pred             cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhh----------hhc
Confidence            99999999998765433322333445677788888874 456666667999999998765 333332          444


Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF  283 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~  283 (458)
                      .|.+++++|..+.++++++.|++.+|||+|.......           |....-.|...|.+..|||.+-.|++.+ ++.
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~  392 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE  392 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cceecccccceeeeeEEcCCCCceEeeccCCc
Confidence            7999999999899999999999999999998653221           1222345788999999999865566555 779


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee-cCcc--ceeeeeEEEEecCCCcEEEE
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHR--NCVTVKGVNFFGPKCEYVVS  360 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~~~~~s~~~~~l~~  360 (458)
                      |++||..--...                                  ..+...+ ..+.  ...+.....| .|+..++++
T Consensus       393 IRv~dss~~sa~----------------------------------~~p~~~I~Hn~~t~RwlT~fKA~W-~P~~~li~v  437 (498)
T KOG4328|consen  393 IRVFDSSCISAK----------------------------------DEPLGTIPHNNRTGRWLTPFKAAW-DPDYNLIVV  437 (498)
T ss_pred             eEEeeccccccc----------------------------------CCccceeeccCcccccccchhhee-CCCccEEEE
Confidence            999997410000                                  0011111 1111  1122455666 999999999


Q ss_pred             ecCCCeEEEEEecCCeEEEEeecCCc-eeeE-EEecCCCCeEEE-eecCCcEEEecCC
Q 012712          361 GSDCGRIFIWKKKGGELIRVIEADRH-VVNC-IEPHPHSTVLAS-SGIESDIKILTPN  415 (458)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~~~l~s-~~~d~~i~iw~~~  415 (458)
                      |..-..|-|+|-+.++.+..+..... .|.+ ..|+|-+..+++ ++..|.|+||.-+
T Consensus       438 g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  438 GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            99999999999988887877654332 4444 489998884554 4567888888654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.95  E-value=2.8e-26  Score=180.40  Aligned_cols=325  Identities=11%  Similarity=0.204  Sum_probs=228.2

Q ss_pred             eeeeeEe-ecCCCceEEEEEec-----CCCEEEEecCCCeEEEEECCCcc---eeeeec-cCCCcceeEEEEccCC--CC
Q 012712           51 LGIYAKL-DKHRGCVNTVSFNT-----DGDILISGSDDRRVILWDWKTER---VKLSFH-SGHNDNVFQAKIMPFT--DD  118 (458)
Q Consensus        51 ~~~~~~~-~~h~~~v~~~~~s~-----~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~~~~~~i~~~~~~~~~--~~  118 (458)
                      ++....+ ..|+.+|..++|.+     +-+.+|+++.+ .+.+|......   .++.+. ..|.+..+.++|+-..  ..
T Consensus        27 yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~  105 (385)
T KOG1034|consen   27 YKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGN  105 (385)
T ss_pred             eEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence            3444434 57899999999985     33577887764 68899876443   233332 2477888888987521  24


Q ss_pred             eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC
Q 012712          119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR  198 (458)
Q Consensus       119 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  198 (458)
                      .++|.++.-|.|+|.|+.+++....  +.+|...|+.+.++|+.++++++++.|..|++|++++..++..+...     .
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~--~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~-----e  178 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKN--YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV-----E  178 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccc--eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc-----c
Confidence            5789999999999999988877655  88999999999999999999999999999999999999999888643     3


Q ss_pred             cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC-------------CCCCCcCCCcccccccccee
Q 012712          199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG-------------QPADYFCPPNLIGDEQVGIT  265 (458)
Q Consensus       199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~i~  265 (458)
                      +  |...|.++.|+++ +.+|++++.|.++.+|++...+....++..             .+...+.......-|...|-
T Consensus       179 g--HrdeVLSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  179 G--HRDEVLSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             c--ccCcEEEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence            3  5557999999998 689999999999999999865443322211             11111111112334556666


Q ss_pred             EEEeCCCCcEEEEec-CCcEEEEEccC-CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712          266 GLAFSDQSELLVSYN-DEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV  343 (458)
Q Consensus       266 ~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (458)
                      |+.|--  .++++-+ ++.|..|.... ......... +...                        ......+.-.....
T Consensus       256 Cvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp-~es~------------------------~Ti~~~~~~~~c~i  308 (385)
T KOG1034|consen  256 CVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKP-PESA------------------------TTILGEFDYPMCDI  308 (385)
T ss_pred             HHHHHh--hheeecccCceEEEEecchhhhhhhccCC-Cccc------------------------eeeeeEeccCccce
Confidence            666654  5777766 66899998732 111111100 0000                        11222333333333


Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE--EEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      +....+| +|-++.||.|.+.|.|++||++..++.  .++..  ....|...+|+.|+.+|+...+|++|.-||.
T Consensus       309 Wfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  309 WFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEEEEee-cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            3455566 899999999999999999999877653  23322  2357999999999999999999999999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.6e-26  Score=183.17  Aligned_cols=305  Identities=20%  Similarity=0.250  Sum_probs=225.9

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC------cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      .+-+.+|.+.|+++.||.++++||+|+.|..+++|.++.      .+++......|...|.|++|..  ....+++|+.+
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~  126 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCc
Confidence            345679999999999999999999999999999999853      3444444456778999999998  88999999999


Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      ++|..-|+++.+.+....-....+.|..+..+|.. +.|++.+.++.|.+||.+.........+...       ......
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-------~~~~F~  198 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-------SGKNFY  198 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecC-------CCccce
Confidence            99999999988776653333334589999999997 7899999999999999987763222222211       334578


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYL  286 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i  286 (458)
                      .+.|+|..+.+|++.+..+-+.+||.+....        ++.......-+......-.+..|+|+|..+.+.-.+ .-.+
T Consensus       199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--------~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~  270 (609)
T KOG4227|consen  199 TAEFHPETPALILVNSETGGPNVFDRRMQAR--------PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY  270 (609)
T ss_pred             eeeecCCCceeEEeccccCCCCceeeccccc--------hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence            8999998889999999999999999987642        111100011111112234678899999888777655 4667


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec----CccceeeeeEEEEecCCCcEEEEec
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK----GHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      ||+-....                                     .+..+.    +..+..++.+++| - +...+++|+
T Consensus       271 ~D~~S~R~-------------------------------------~V~k~D~N~~GY~N~~T~KS~~F-~-~D~~v~tGS  311 (609)
T KOG4227|consen  271 FDFISQRC-------------------------------------FVLKSDHNPNGYCNIKTIKSMTF-I-DDYTVATGS  311 (609)
T ss_pred             eeeecccc-------------------------------------eeEeccCCCCcceeeeeeeeeee-e-cceeeeccC
Confidence            77765211                                     111111    2233445788888 3 445699999


Q ss_pred             CCCeEEEEEecCC-----------------------eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          363 DCGRIFIWKKKGG-----------------------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       363 ~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      .+-.|++|.+...                       +.+..+++|...++.+.|+|...+|++.+-.+.++||...
T Consensus       312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            9999999987421                       2235678999999999999999999999999999999754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=7.5e-26  Score=193.26  Aligned_cols=297  Identities=18%  Similarity=0.201  Sum_probs=204.2

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      +....|+.+.+||.|.++|...-....+               -..+.....|.+.|..+.|.|....|++++.|.++++
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr~e---------------e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~  126 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFRLE---------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP  126 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcchh---------------hhhhcccccccceeEeeccCCCceeEEEccCCceeee
Confidence            3456699999999999999984322100               0122446689999999999997788999999999999


Q ss_pred             EECCCcceeee-eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-------------------------
Q 012712           88 WDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-------------------------  141 (458)
Q Consensus        88 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-------------------------  141 (458)
                      ||++..+.... ...+|...|.+++|.|. +...+++|+.||.|.|||++....-                         
T Consensus       127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  127 WDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eeeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            99998887655 23699999999999994 6678899999999999999654310                         


Q ss_pred             eeeeccccccceEE---EEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcc-eeecceEEEEECCCCC
Q 012712          142 ETKLLGKHQGRAHK---LAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNA  216 (458)
Q Consensus       142 ~~~~~~~~~~~v~~---~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~  216 (458)
                      .......+...|.+   +.+..|. ..|++++. |+.|++||++..................+ .....+.++..... |
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-G  283 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-G  283 (720)
T ss_pred             cccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC-C
Confidence            00011234444444   4455566 56788777 99999999998765443332222222111 12335778888776 4


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc--cceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL  293 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~  293 (458)
                      .++++.+.|+.|+.|++......-             .....++.  ..-..-..+|++.++++++ +...++|.+.+. 
T Consensus       284 t~L~AsCtD~sIy~ynm~s~s~sP-------------~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~-  349 (720)
T KOG0321|consen  284 TYLFASCTDNSIYFYNMRSLSISP-------------VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP-  349 (720)
T ss_pred             CeEEEEecCCcEEEEeccccCcCc-------------hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc-
Confidence            566556669999999999875321             11111111  1112234689999999999 558999999874 


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEe
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~  372 (458)
                                                          ......+.+|.-.  |++++| .|. -.-++++++|.++++|++
T Consensus       350 ------------------------------------e~~~~~l~Ght~e--Vt~V~w-~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  350 ------------------------------------EAPPALLLGHTRE--VTTVRW-LPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             ------------------------------------cCChhhhhCcceE--EEEEee-ccccCCCceeeccCcceEEEec
Confidence                                                2345567788775  778887 442 234566699999999998


Q ss_pred             cCC
Q 012712          373 KGG  375 (458)
Q Consensus       373 ~~~  375 (458)
                      ..+
T Consensus       391 ~~~  393 (720)
T KOG0321|consen  391 SNG  393 (720)
T ss_pred             cCc
Confidence            654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.95  E-value=7e-26  Score=183.14  Aligned_cols=313  Identities=15%  Similarity=0.212  Sum_probs=211.4

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEEC
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW   90 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~   90 (458)
                      .+|+||+.|..|+||.++.++.-.            +...++....|..|...|+++.|+|+|.+||+|+.+|.|.+|..
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~------------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~   94 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGG------------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQ   94 (434)
T ss_pred             cceecccCccceeeeeeeecCCCC------------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEe
Confidence            389999999999999999665432            12567888899999999999999999999999999999999976


Q ss_pred             C--------C-----c--ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEE
Q 012712           91 K--------T-----E--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK  155 (458)
Q Consensus        91 ~--------~-----~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~  155 (458)
                      .        +     .  -.+...+.+|...|+.++|+|  ++.++++++.|..+++||+..+.....  +..|...+..
T Consensus        95 ~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~--~~dh~~yvqg  170 (434)
T KOG1009|consen   95 GDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAI--LDDHEHYVQG  170 (434)
T ss_pred             cCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEee--ccccccccce
Confidence            5        2     1  123344578999999999999  999999999999999999999887766  8899999999


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc-------------eeecceEEEEECCCCCcEEEEe
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY-------------MTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      ++|.|-+ +++++-+.|...+.+.+...+..............++             ....-...++|+|+ +.++++.
T Consensus       171 vawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd-G~llvtP  248 (434)
T KOG1009|consen  171 VAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD-GSLLVTP  248 (434)
T ss_pred             eecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC-CcEEEcc
Confidence            9999998 6788888888777776655443332221000000000             01122456778887 5666654


Q ss_pred             cC----CCe-----EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCC
Q 012712          223 GS----DEY-----TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL  293 (458)
Q Consensus       223 ~~----dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~  293 (458)
                      ..    .+.     .++|+-...+              .|.........+...+.++|             ..|.++.  
T Consensus       249 ag~~~~g~~~~~n~tYvfsrk~l~--------------rP~~~lp~~~k~~lavr~~p-------------Vy~elrp--  299 (434)
T KOG1009|consen  249 AGLFKVGGGVFRNTSYVFSRKDLK--------------RPAARLPSPKKPALAVRFSP-------------VYYELRP--  299 (434)
T ss_pred             cceeeeCCceeeceeEeecccccc--------------CceeecCCCCcceEEEEeee-------------eEEEecc--
Confidence            31    111     1222211110              11111111222233333333             1122111  


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                                                                   -.....+..    -|-+-.+|.++ ...|++||.+
T Consensus       300 ---------------------------------------------~~~~~~~~~----lpyrlvfaiAt-~~svyvydtq  329 (434)
T KOG1009|consen  300 ---------------------------------------------LSSEKFLFV----LPYRLVFAIAT-KNSVYVYDTQ  329 (434)
T ss_pred             ---------------------------------------------ccccccccc----cccceEEEEee-cceEEEeccc
Confidence                                                         111000111    34444555565 5689999999


Q ss_pred             CCeEEEEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          374 GGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       374 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +.+++.... -|-..|++++|++||..|+..+.||...+-.++..++-
T Consensus       330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            888887664 48889999999999999999999999888777765543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.9e-25  Score=173.22  Aligned_cols=272  Identities=15%  Similarity=0.217  Sum_probs=197.1

Q ss_pred             eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEEcC-CCCeEEEEecCCC
Q 012712           97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDG  173 (458)
Q Consensus        97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg  173 (458)
                      ..+..+|..-|.++.|.+  .|+.+|+|+.|++++|||.+....  ..+.....|.+.|..+.|.+ .-.+.+++++.|+
T Consensus         6 ~pi~s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             cccccCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence            344568999999999999  999999999999999999755433  33445778999999999964 4358999999999


Q ss_pred             eEEEEeCCCCCccc----eeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712          174 LVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       174 ~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      ++.||.-.......    -.......+     ....|+.+.|.|.. |-.+++++.||.+|||+....-......+....
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~D-----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVD-----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeec-----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            99999753111110    001111111     34579999999962 568899999999999998655433222221111


Q ss_pred             CCcCCCccccccccceeEEEeCCC---CcEEEEecCC------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA  319 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (458)
                      ..  .......+..+..|+.|+|.   ..+||.|+++      .++||........                        
T Consensus       159 ~~--~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK------------------------  212 (361)
T KOG2445|consen  159 QN--VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK------------------------  212 (361)
T ss_pred             hh--ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce------------------------
Confidence            10  01122334567789999975   3689999876      6899987664321                        


Q ss_pred             cCCCCCCcccccCceeecCccceeeeeEEEEecCCC----cEEEEecCCCeEEEEEecCC--------------------
Q 012712          320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKGG--------------------  375 (458)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~--------------------  375 (458)
                                ...+..+.+|..+  |+.++| .|+-    ..||+++.|| |+||.+...                    
T Consensus       213 ----------w~kva~L~d~~dp--I~di~w-APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v  278 (361)
T KOG2445|consen  213 ----------WLKVAELPDHTDP--IRDISW-APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV  278 (361)
T ss_pred             ----------eeeehhcCCCCCc--ceeeee-ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence                      2344566678775  999999 8863    5889999999 999998631                    


Q ss_pred             eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       376 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      +.+..+..|++.|..+.|+-.|..|++.|.||+||+|...
T Consensus       279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            3445677899999999999999999999999999999764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=2.6e-25  Score=182.62  Aligned_cols=293  Identities=13%  Similarity=0.138  Sum_probs=213.8

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF  178 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  178 (458)
                      .-+.+.|++++|+|..+-+++|+|..-|+|-+||+.+.+.  .....+..|..+|.++.|+|.+...+++.+.||+|++-
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            4578899999999954457889999999999999963322  22334778999999999999998899999999999999


Q ss_pred             eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712          179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      |++.......+....        ....+..+.|+.++ ..++.+..=|...+||+++....              .....
T Consensus       263 D~~~~i~e~v~s~~~--------d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~--------------~~~~~  319 (498)
T KOG4328|consen  263 DFEGNISEEVLSLDT--------DNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSE--------------YENLR  319 (498)
T ss_pred             eecchhhHHHhhcCc--------cceeeeeccccCCC-ccEEEeecccceEEEEeecCCcc--------------chhhh
Confidence            999876555444321        33357788888874 45556666669999999987632              12333


Q ss_pred             ccccceeEEEeCCCC-cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          259 DEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       259 ~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                      -|...|+.++++|.. .+|++++ +++.+|||++.-.....                                  +.-..
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------------------------------p~lst  365 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------------------------------PFLST  365 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----------------------------------cceec
Confidence            456699999999976 4677877 66899999987322110                                  12223


Q ss_pred             cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec----CCeEEEEeecCCc------eeeEEEecCCCCeEEEeecC
Q 012712          337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK----GGELIRVIEADRH------VVNCIEPHPHSTVLASSGIE  406 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~------~v~~~~~s~~~~~l~s~~~d  406 (458)
                      ..|...  |.+..| ||.+..|++.+.|.+|+|||..    .-++..++. |..      .....+|.|+..++++|-.-
T Consensus       366 ~~Hrrs--V~sAyF-SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~  441 (498)
T KOG4328|consen  366 LPHRRS--VNSAYF-SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYP  441 (498)
T ss_pred             ccccce--eeeeEE-cCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccC
Confidence            345553  788887 9999889999999999999983    334445554 321      24567899999999999999


Q ss_pred             CcEEEecCCccccc-ccccccc-cEEEE-EEecCCc-EEEeeecCCceEEEE
Q 012712          407 SDIKILTPNAADRA-TLPTNIE-QVCFS-IYSADYW-WSKSQNFSCSILLFE  454 (458)
Q Consensus       407 ~~i~iw~~~~~~~~-~~~~~~~-~v~~~-~~s~d~~-~l~s~~~d~~i~~w~  454 (458)
                      ..|-|+|-..++.. .+..... .|.++ .|+|-+. +++-++..|.|.||-
T Consensus       442 r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  442 RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence            99999999888744 3222222 35443 5999997 555566677777773

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.9e-27  Score=205.75  Aligned_cols=237  Identities=19%  Similarity=0.319  Sum_probs=201.8

Q ss_pred             eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712           57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL  136 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~  136 (458)
                      +-.|...|.++..-..++.+++|+.|..+-+|.......+..+ .+|..+|.++.|++  +..+|++|+.+|+|++||++
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~--~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDT--SERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCc--chhhhcccccCCceeeeehh
Confidence            4578999999998777899999999999999998877777765 79999999999999  99999999999999999999


Q ss_pred             cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      ..+.+.+  +.+|...+.++.|+|-+ .++++++.|+.+++||.+...+...+..          +...+.++.|+|+ |
T Consensus       101 eAk~vrt--Ltgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s----------~~~vv~~l~lsP~-G  166 (825)
T KOG0267|consen  101 EAKIVRT--LTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKS----------HTRVVDVLRLSPD-G  166 (825)
T ss_pred             hhhhhhh--hhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecC----------CcceeEEEeecCC-C
Confidence            8887765  99999999999999999 6789999999999999997777766653          3345788899997 7


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN  296 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~  296 (458)
                      .+++.+++|..+++||+..+++                                                          
T Consensus       167 r~v~~g~ed~tvki~d~~agk~----------------------------------------------------------  188 (825)
T KOG0267|consen  167 RWVASGGEDNTVKIWDLTAGKL----------------------------------------------------------  188 (825)
T ss_pred             ceeeccCCcceeeeeccccccc----------------------------------------------------------
Confidence            8999999999999999877653                                                          


Q ss_pred             CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe
Q 012712          297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE  376 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  376 (458)
                                                          ...|..|...  +..+.| +|..-++++|+.|+++++||+++.+
T Consensus       189 ------------------------------------~~ef~~~e~~--v~sle~-hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  189 ------------------------------------SKEFKSHEGK--VQSLEF-HPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             ------------------------------------cccccccccc--cccccc-CchhhhhccCCCCceeeeeccceeE
Confidence                                                2334445443  566666 8888889999999999999999999


Q ss_pred             EEEEeecCCceeeEEEecCCCCeEEEeecCC
Q 012712          377 LIRVIEADRHVVNCIEPHPHSTVLASSGIES  407 (458)
Q Consensus       377 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  407 (458)
                      .+.........|.+++|+|+++.+++|..+.
T Consensus       230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             EeeccCCccCCceeeeecCCceeeecCchhh
Confidence            8888887788999999999999998886553

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-24  Score=170.05  Aligned_cols=292  Identities=14%  Similarity=0.193  Sum_probs=199.3

Q ss_pred             ecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc----eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      .+|.+-|.++.|.+-|+++|||+.|++|+|||.++..    +.... +.|.+.|..+.|.+.+-|+.+|+++.|+++.||
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            4799999999999999999999999999999975443    23333 689999999999987789999999999999999


Q ss_pred             ecccc-------cceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCC---CCccee
Q 012712          134 QILER-------GGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMT  202 (458)
Q Consensus       134 ~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~  202 (458)
                      .=...       +.+....+......|+.+.|.|.. .-.+++++.||.++||+....-............   ...-.+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            75211       223334566677899999999964 2578999999999999876543332221110000   000013


Q ss_pred             ecceEEEEECCC--CCcEEEEecCC-----CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-C-
Q 012712          203 VVNLNAIAIDPR--NANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S-  273 (458)
Q Consensus       203 ~~~v~~~~~~p~--~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-  273 (458)
                      ..+..|+.|+|.  ...+|++|+.+     +.+.||........           .........+..+|+.++|.|+ | 
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----------w~kva~L~d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----------WLKVAELPDHTDPIRDISWAPNIGR  237 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----------eeeehhcCCCCCcceeeeeccccCC
Confidence            345789999875  23578888766     46888876544210           0112233468899999999997 3 


Q ss_pred             --cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          274 --ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       274 --~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                        .+||+++.+.|+||.+.................                  ...-....+..+.+|...  |..+.| 
T Consensus       238 ~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~------------------~~~l~v~~vs~~~~H~~~--VWrv~w-  296 (361)
T KOG2445|consen  238 SYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDL------------------MTDLPVEKVSELDDHNGE--VWRVRW-  296 (361)
T ss_pred             ceeeEEEeecCcEEEEEEeeccchhhhhcccCCCC------------------ccccceEEeeeccCCCCc--eEEEEE-
Confidence              478888866799999885321110000000000                  000012345567788875  899999 


Q ss_pred             cCCCcEEEEecCCCeEEEEEecC---CeEEEEee
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKG---GELIRVIE  382 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~  382 (458)
                      .-.|..|++.+.||.||+|...-   .++...++
T Consensus       297 NmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~  330 (361)
T KOG2445|consen  297 NMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLK  330 (361)
T ss_pred             eeeeeEEeecCCCceeeehhhhhhhhheeeeEEe
Confidence            88999999999999999998642   34555554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.5e-27  Score=204.19  Aligned_cols=255  Identities=17%  Similarity=0.243  Sum_probs=211.7

Q ss_pred             CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712          118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR  197 (458)
Q Consensus       118 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  197 (458)
                      ...++.....-.+++|+.+.        +..|...+.++..-..+ ..+++|+.|..+-+|.+.....+..+.+      
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~--------~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~------   68 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE--------FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTG------   68 (825)
T ss_pred             ccccceeeeeeccccccchh--------hhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhheeec------
Confidence            34445555556677887633        55688888888885555 7899999999999999887776665544      


Q ss_pred             CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712          198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV  277 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (458)
                          +..+|.++.|++. ..+|++|+.+|+|++||+...+.               ...+.+|...+.++.|+|-+.+.+
T Consensus        69 ----hespIeSl~f~~~-E~LlaagsasgtiK~wDleeAk~---------------vrtLtgh~~~~~sv~f~P~~~~~a  128 (825)
T KOG0267|consen   69 ----HESPIESLTFDTS-ERLLAAGSASGTIKVWDLEEAKI---------------VRTLTGHLLNITSVDFHPYGEFFA  128 (825)
T ss_pred             ----cCCcceeeecCcc-hhhhcccccCCceeeeehhhhhh---------------hhhhhccccCcceeeeccceEEec
Confidence                6668999999997 68999999999999999997653               234556788999999999999999


Q ss_pred             EecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc
Q 012712          278 SYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE  356 (458)
Q Consensus       278 ~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~  356 (458)
                      .++.+ .+.+||.+.                                      ..+...+.+|...  +..+.| +|+|+
T Consensus       129 ~gStdtd~~iwD~Rk--------------------------------------~Gc~~~~~s~~~v--v~~l~l-sP~Gr  167 (825)
T KOG0267|consen  129 SGSTDTDLKIWDIRK--------------------------------------KGCSHTYKSHTRV--VDVLRL-SPDGR  167 (825)
T ss_pred             cccccccceehhhhc--------------------------------------cCceeeecCCcce--eEEEee-cCCCc
Confidence            99855 799999885                                      3467778887764  677787 99999


Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEe
Q 012712          357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYS  435 (458)
Q Consensus       357 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s  435 (458)
                      +++.|++|..++|||+..|+...+|..|.+.+.++.|+|..-++++|+.|+++++||+++-+.. ........|.+++|+
T Consensus       168 ~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn  247 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFN  247 (825)
T ss_pred             eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeec
Confidence            9999999999999999999999999999999999999999999999999999999999977665 444456779999999


Q ss_pred             cCCcEEEeeecCC
Q 012712          436 ADYWWSKSQNFSC  448 (458)
Q Consensus       436 ~d~~~l~s~~~d~  448 (458)
                      |+|+.+++|..+.
T Consensus       248 ~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  248 PDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeecCchhh
Confidence            9999998876653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.6e-25  Score=175.14  Aligned_cols=290  Identities=16%  Similarity=0.183  Sum_probs=199.1

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEEecCCCeEEEE
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDRRVILW   88 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~iw   88 (458)
                      .++|++.+.|.|++||..+|+.+.                     .+++|...++.++|..  ....+.+|+.||+|++|
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~---------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w   99 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE---------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW   99 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh---------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence            568999999999999999998874                     4899999999999987  45789999999999999


Q ss_pred             ECCCcceeeeec-cCCC-cceeEEEEccCCCCeEEEEEcC----CCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           89 DWKTERVKLSFH-SGHN-DNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        89 d~~~~~~~~~~~-~~~~-~~i~~~~~~~~~~~~~l~s~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      |++.......+. ..+. .+..+++-..  .++.+++|..    +-.+.+||++..+.........|.+.|+++.|+|..
T Consensus       100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~  177 (376)
T KOG1188|consen  100 DIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD  177 (376)
T ss_pred             EeecchhhhheeccCCCCCcceEeeccC--cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence            998876655543 3333 4566666654  5667777654    567999999988775545577899999999999999


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCcc----ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAAT----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      +++|++|+.||-|.+||++.....    ..+.           +...|.++.|..++-+.+.+-+......+|+++.+..
T Consensus       178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-----------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-----------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             CCeEEeecccceEEeeecCCCcchhhHHHhhc-----------ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            999999999999999999865322    2222           4446899999987556788888999999999998763


Q ss_pred             CCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEE-ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712          239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVS-YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD  315 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~-~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (458)
                      ...  +..|............ ...+... .+| +...++. ++ .+...++-+......                    
T Consensus       247 ~~~--~~~~~~~~~d~r~~~~-~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~--------------------  302 (376)
T KOG1188|consen  247 ETW--LENPDVSADDLRKEDN-CDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSG--------------------  302 (376)
T ss_pred             hhc--ccCccchhhhHHhhhh-hhheeec-ccCCCcceEEEeccccCceeEEEeeecccc--------------------
Confidence            222  1111000000000000 0111111 123 2333333 33 344555544321100                    


Q ss_pred             CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                                  .....+..+.++... .|+++.| ...+..+++|++||.+.+|..
T Consensus       303 ------------~~~~~~a~l~g~~~e-iVR~i~~-~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  303 ------------SLLTEPAILQGGHEE-IVRDILF-DVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ------------cccCccccccCCcHH-HHHHHhh-hcccceeeccCCCceEEEEec
Confidence                        013345566664433 3778877 788899999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=3e-24  Score=183.76  Aligned_cols=188  Identities=14%  Similarity=0.209  Sum_probs=140.5

Q ss_pred             ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCC
Q 012712          222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~  299 (458)
                      .+..|.|-||+++....+..-         ....+.  ....|+.+.|.| |...|+.++ ++.|++|.+..+...... 
T Consensus       599 ~g~gG~iai~el~~PGrLPDg---------v~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-  666 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDG---------VMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-  666 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcc---------cccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-
Confidence            355788999999865432110         011122  245799999999 556777777 458999999876443331 


Q ss_pred             CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCCeEE
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~  378 (458)
                                                    ..+...+..|...  |.++.| +| -...|++++.|-+|++||+.+++..
T Consensus       667 ------------------------------~tPe~~lt~h~eK--I~slRf-HPLAadvLa~asyd~Ti~lWDl~~~~~~  713 (1012)
T KOG1445|consen  667 ------------------------------MTPEKILTIHGEK--ITSLRF-HPLAADVLAVASYDSTIELWDLANAKLY  713 (1012)
T ss_pred             ------------------------------CCcceeeecccce--EEEEEe-cchhhhHhhhhhccceeeeeehhhhhhh
Confidence                                          2345677788775  899998 77 3568899999999999999999999


Q ss_pred             EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc---cccEEEEEEecCCcEEEeeecCC----ceE
Q 012712          379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN---IEQVCFSIYSADYWWSKSQNFSC----SIL  451 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~s~~~d~----~i~  451 (458)
                      ..+.+|.+.|.+++|||||+.+|+.+.||+|++|+...++.....+.   ..+-..+.|.-||+++++.++|.    .|.
T Consensus       714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~  793 (1012)
T KOG1445|consen  714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQ  793 (1012)
T ss_pred             heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhh
Confidence            99999999999999999999999999999999999987754322211   12345678999999999988885    355


Q ss_pred             EEE
Q 012712          452 LFE  454 (458)
Q Consensus       452 ~w~  454 (458)
                      +||
T Consensus       794 ~Y~  796 (1012)
T KOG1445|consen  794 MYD  796 (1012)
T ss_pred             hhh
Confidence            554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=2.6e-25  Score=178.16  Aligned_cols=262  Identities=18%  Similarity=0.233  Sum_probs=188.6

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEE
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVIL   87 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i   87 (458)
                      +..+.++=++.|.|+||++..  .+.....+-+...   ....+++.++.+|.+.=.+|+|||-. ..|+||.--+.|++
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~~~~~---~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~l  238 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAP--HLNALSEPGLEVK---DSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHL  238 (440)
T ss_pred             CcceeeeecccCcEEEEEchh--hhhhhcCcccccc---ccccCceEEecccCccceeeecccccccccccCccccceEe
Confidence            445677778999999999872  2211111111111   13457888999999999999999932 34788888889999


Q ss_pred             EECCCcceee--eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712           88 WDWKTERVKL--SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV  165 (458)
Q Consensus        88 wd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  165 (458)
                      |...++.-..  .-..+|+..|-.++|||. ....|++|+-||+|+|||++.+........+.|.+.|+.|.|+...+ +
T Consensus       239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt-E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-l  316 (440)
T KOG0302|consen  239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPT-EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-L  316 (440)
T ss_pred             eeeccCceeecCccccccccchhhhccCCc-cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-e
Confidence            9988865321  112579999999999994 56789999999999999999985554455688999999999999985 8


Q ss_pred             EEEecCCCeEEEEeCCCCC---ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC-
Q 012712          166 FYTCGEDGLVQHFDLRTGA---ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS-  241 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-  241 (458)
                      |++|+.||+++|||+++-+   ++..+..          |..+|+++.|+|.....|++++.|.+|.+||+....-... 
T Consensus       317 LasG~DdGt~~iwDLR~~~~~~pVA~fk~----------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~  386 (440)
T KOG0302|consen  317 LASGGDDGTLSIWDLRQFKSGQPVATFKY----------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI  386 (440)
T ss_pred             eeecCCCceEEEEEhhhccCCCcceeEEe----------ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence            9999999999999998654   3444443          6668999999998788999999999999999975432111 


Q ss_pred             --ccCCCCCCCcCCCccc-cccccceeEEEeCCCC-cEEEEecCCcEEEEE
Q 012712          242 --TDFGQPADYFCPPNLI-GDEQVGITGLAFSDQS-ELLVSYNDEFIYLFT  288 (458)
Q Consensus       242 --~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~~~i~i~~  288 (458)
                        ..... +....++-++ ...+..+..+.|+++- -+|++.+-+.+.+|.
T Consensus       387 ~~~a~~~-L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  387 DQEAAEG-LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             ccccccc-hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence              00000 1111222222 2235678889999874 366666666666664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-24  Score=177.17  Aligned_cols=282  Identities=10%  Similarity=0.168  Sum_probs=203.8

Q ss_pred             EEEEecCCCEEEEecCC---CeEEEEECCCcceeeeeccCCC----cceeEEEEccC-----CCCeEEEEEcCCCcEEEe
Q 012712           66 TVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHN----DNVFQAKIMPF-----TDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~-----~~~~~l~s~~~dg~i~vw  133 (458)
                      .+..-|..++++++-.+   ..+.+|=.+..+.-. + ..|.    ....|++|...     ..|+++|.|..|..|.||
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl-Y-vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL-Y-VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcce-e-EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            45556766666666432   344444443333211 1 1221    23356666542     246899999999999999


Q ss_pred             ecccccceee-------------------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712          134 QILERGGVET-------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI  194 (458)
Q Consensus       134 ~~~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  194 (458)
                      |+.-...+..                   ..-.+|+..|.+++|+..-+++|++|+.|.+|++||+.++++...+..   
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~---  284 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH---  284 (463)
T ss_pred             ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh---
Confidence            9853322110                   112368999999999998889999999999999999999999888863   


Q ss_pred             CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712          195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE  274 (458)
Q Consensus       195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  274 (458)
                             +...|.++.|+|..+.++++|+.|++|.+.|.|....                          .+..|.-+| 
T Consensus       285 -------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--------------------------s~~~wk~~g-  330 (463)
T KOG0270|consen  285 -------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--------------------------SGKEWKFDG-  330 (463)
T ss_pred             -------cCCceeEEEecCCCceEEEeccccceEEeeeccCccc--------------------------cCceEEecc-
Confidence                   5568999999999899999999999999999985321                          011122111 


Q ss_pred             EEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712          275 LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK  354 (458)
Q Consensus       275 ~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~  354 (458)
                                                                                           .|..++| .|.
T Consensus       331 ---------------------------------------------------------------------~VEkv~w-~~~  340 (463)
T KOG0270|consen  331 ---------------------------------------------------------------------EVEKVAW-DPH  340 (463)
T ss_pred             ---------------------------------------------------------------------ceEEEEe-cCC
Confidence                                                                                 1455555 443


Q ss_pred             C-cEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCcccccccccccc---c
Q 012712          355 C-EYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADRATLPTNIE---Q  428 (458)
Q Consensus       355 ~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~---~  428 (458)
                      . ..++++..||+|+-+|++.. +++.++++|.++|.++++++.-+ +|+|++.|+.+++|++..........|..   +
T Consensus       341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r  420 (463)
T KOG0270|consen  341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR  420 (463)
T ss_pred             CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc
Confidence            3 46677889999999999864 89999999999999999987654 78899999999999998776655444443   3


Q ss_pred             EEEEEEecCC-cEEEeeecCCceEEEEEe
Q 012712          429 VCFSIYSADY-WWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       429 v~~~~~s~d~-~~l~s~~~d~~i~~w~~~  456 (458)
                      ..+.++.|+- -++|.|+..+.++|||++
T Consensus       421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  421 LHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             eeecccCCCcceEEEecCccceEEEeecc
Confidence            5666777777 677888988899999985

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=172.51  Aligned_cols=290  Identities=13%  Similarity=0.168  Sum_probs=202.2

Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc-cc
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GR  152 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~  152 (458)
                      ..+|++-..|.|++||..+++.+..+ .++...++.++|..-.....+.+|+.||+|++||++............+. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            56888888999999999999888888 78999999999986223567899999999999999998877766666666 56


Q ss_pred             eEEEEEcCCCCeEEEEec----CCCeEEEEeCCCCCc-cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe
Q 012712          153 AHKLAIEPGSPHVFYTCG----EDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY  227 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  227 (458)
                      ..+++.+-.+ +++++|.    .+-.|.+||+|..+. +..+..       .  |...|+++.|+|.++++|++|+.||.
T Consensus       120 f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-------S--H~DDVT~lrFHP~~pnlLlSGSvDGL  189 (376)
T KOG1188|consen  120 FICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-------S--HNDDVTQLRFHPSDPNLLLSGSVDGL  189 (376)
T ss_pred             ceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhh-------h--ccCcceeEEecCCCCCeEEeecccce
Confidence            6777776555 5677764    356799999998765 333321       1  56689999999999999999999999


Q ss_pred             EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712          228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      |.+||+........           ... .-.+...|.++.|..++  +..+....++..+|+++.+.....++.+....
T Consensus       190 vnlfD~~~d~EeDa-----------L~~-viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~  257 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDA-----------LLH-VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA  257 (376)
T ss_pred             EEeeecCCCcchhh-----------HHH-hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence            99999987532111           111 22346679999999988  65555668899999998876333322111100


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEec---CC---eEE
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK---GG---ELI  378 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~~---~~~  378 (458)
                      .                            ......+...+..... ..++...+.++. -|+..++-+.   ++   +.+
T Consensus       258 ~----------------------------d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~  308 (376)
T KOG1188|consen  258 D----------------------------DLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP  308 (376)
T ss_pred             h----------------------------hHHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecccccccCcc
Confidence            0                            0000000001222211 334445555444 4555555443   22   344


Q ss_pred             EEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          379 RVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       379 ~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      ..+.+ |...|.++.|...+.++.|||+||.+.+|..+
T Consensus       309 a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  309 AILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             ccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            55666 66788999999999999999999999999853

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1e-25  Score=205.34  Aligned_cols=290  Identities=15%  Similarity=0.225  Sum_probs=217.5

Q ss_pred             EEEEecCCC-EEEEe----------cCCCeEEEEECCCcce------eeeeccCCCcceeEEEEccCCCCe--EEEEEcC
Q 012712           66 TVSFNTDGD-ILISG----------SDDRRVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDR--SIVTCAA  126 (458)
Q Consensus        66 ~~~~s~~~~-~l~s~----------~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~--~l~s~~~  126 (458)
                      .++|+|++. ++|+|          +.+.++.||.+.....      ...+  .-....+.++|.+..++.  +|+.|..
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeecccc
Confidence            578999886 55544          3355667776543222      1222  234578899999933222  4888999


Q ss_pred             CCcEEEeecccc---c-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712          127 DGQVRHAQILER---G-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT  202 (458)
Q Consensus       127 dg~i~vw~~~~~---~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  202 (458)
                      ||.|.+||...-   . .........|++.|..+.|++..+++|++|+.||.|.|||+...+........        ..
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~--------~~  160 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ--------AP  160 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC--------CC
Confidence            999999998652   1 11223367899999999999999889999999999999999886544333211        03


Q ss_pred             ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEec-
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-  280 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-  280 (458)
                      ...|.+++|+.....+|++++.+|++.|||++..+.+-.+.             .......+..++|+|+.. .|++++ 
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-------------~~~~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-------------DTPGRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-------------cCCCccceeeeeeCCCCceeeeeecC
Confidence            44799999998877899999999999999999875321111             111124578999999863 444444 


Q ss_pred             CC---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-c
Q 012712          281 DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-E  356 (458)
Q Consensus       281 ~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~  356 (458)
                      ++   .|.+||++..                                     ....+.+.+|...  |.++.| .+.+ +
T Consensus       228 dd~~PviqlWDlR~a-------------------------------------ssP~k~~~~H~~G--ilslsW-c~~D~~  267 (1049)
T KOG0307|consen  228 DDSAPVIQLWDLRFA-------------------------------------SSPLKILEGHQRG--ILSLSW-CPQDPR  267 (1049)
T ss_pred             CCCCceeEeeccccc-------------------------------------CCchhhhcccccc--eeeecc-CCCCch
Confidence            33   4999998863                                     3456777888886  999999 6655 8


Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCccc
Q 012712          357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       357 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~  418 (458)
                      +|++++.|++|.+|+.++++.+..+......+..+.|+|... .++.++-||.|.|+.+.+..
T Consensus       268 lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  268 LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999999999999999999999988888999999999877 78888999999999998653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.9e-25  Score=178.55  Aligned_cols=254  Identities=17%  Similarity=0.238  Sum_probs=188.1

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceE---EeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCe
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVL---RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRR   84 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~   84 (458)
                      .|.++|.|.-|..|.|||+.--..+   +..+.-++.....   .-+.-..-.+|+..|.+++|+..- +.||+||.|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v---~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAV---LPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT  267 (463)
T ss_pred             CcceEEEeccCceeEEecccccccc---ccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence            3679999999999999998732211   1111111111100   001112235799999999998754 68999999999


Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH  164 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  164 (458)
                      |++||+.++++...+ ..|...|.++.|+|. ....|++|+.|+++.+.|.+.......  .-...+.|..++|.|...+
T Consensus       268 V~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~--~wk~~g~VEkv~w~~~se~  343 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSI-THHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGK--EWKFDGEVEKVAWDPHSEN  343 (463)
T ss_pred             EEEEEcCCCCcceeh-hhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCc--eEEeccceEEEEecCCCce
Confidence            999999999998777 679999999999995 778999999999999999986443322  2235678999999999989


Q ss_pred             EEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          165 VFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       165 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      .++++..||+|+-+|+|.. +++..+..          |..+|.++++++..+.++++++.|+.|++|++........  
T Consensus       344 ~f~~~tddG~v~~~D~R~~~~~vwt~~A----------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v--  411 (463)
T KOG0270|consen  344 SFFVSTDDGTVYYFDIRNPGKPVWTLKA----------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV--  411 (463)
T ss_pred             eEEEecCCceEEeeecCCCCCceeEEEe----------ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc--
Confidence            9999999999999999987 55555554          6668999999998889999999999999999876542100  


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEecCC-cEEEEEccCC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDE-FIYLFTQDMG  292 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~-~i~i~~~~~~  292 (458)
                                 ......-+...|.++.|+-. +++.|+.. .+++||+.+.
T Consensus       412 -----------~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  412 -----------KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             -----------ccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence                       00011123467778888754 45555544 5999999875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.94  E-value=5.3e-22  Score=182.24  Aligned_cols=358  Identities=22%  Similarity=0.353  Sum_probs=264.1

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccc-cccccccccccccccceEEeeeeeEeecCC-CceEEEEE-ecCCC-EEEEe
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQ-LSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSF-NTDGD-ILISG   79 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-s~~~~-~l~s~   79 (458)
                      +.+++.+..++.++.|+.+.+|+...+. ..                     ..+.++. ..+..+.+ ++++. +++..
T Consensus        71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (466)
T COG2319          71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLI---------------------KSLEGLHDSSVSKLALSSPDGNSILLAS  129 (466)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcCCCceeE---------------------EEEeccCCCceeeEEEECCCcceEEecc
Confidence            3467888889999899999999999664 22                     2344433 47777777 78887 55554


Q ss_pred             cC-CCeEEEEECCC-cceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeeccccccceEEE
Q 012712           80 SD-DRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKL  156 (458)
Q Consensus        80 ~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~  156 (458)
                      +. |+.+.+|+... ......+ ..|...|..++|+|  ++..+++++. ++.+++|++........  +..|...+.++
T Consensus       130 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~  204 (466)
T COG2319         130 SSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLST--LAGHTDPVSSL  204 (466)
T ss_pred             CCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEe--eccCCCceEEE
Confidence            45 89999999987 5554555 78999999999999  9988888885 99999999988555544  66799999999


Q ss_pred             EEcCCCCeEEEEecCCCeEEEEeCCCCCccce-eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      +|+|+++.++++++.|+.|++||...+..... +.        +  +.... ...|+|+ +..+++++.|+.+++|+.+.
T Consensus       205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~--------~--~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS--------G--HSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC--------C--CCcce-eEeECCC-CCEEEEecCCCcEEEeeecC
Confidence            99999853556669999999998886655442 22        1  11122 2289998 47888999999999999987


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      ....             .... ..|...+.++.|.|++..+++++ ++.+.+|+......                    
T Consensus       273 ~~~~-------------~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------  318 (466)
T COG2319         273 SSSL-------------LRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL--------------------  318 (466)
T ss_pred             CCcE-------------EEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce--------------------
Confidence            6520             0111 44578899999999888877766 44689998776321                    


Q ss_pred             CCccccCCCCCCcccccCceee--cCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEEecCCeEEEEeecCCceeeEE
Q 012712          315 DHTSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCI  391 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  391 (458)
                                        ....  ..|..  .+..+.+ .+++..++.+ ..|+.+++|+.............. .+..+
T Consensus       319 ------------------~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~  376 (466)
T COG2319         319 ------------------LSSLTLKGHEG--PVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV  376 (466)
T ss_pred             ------------------EEEeeecccCC--ceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence                              1112  24444  3777887 6664555555 678999999998777333333222 28889


Q ss_pred             EecCCCCeEEE-eecCCcEEEecCCccccccccccc-ccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          392 EPHPHSTVLAS-SGIESDIKILTPNAADRATLPTNI-EQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       392 ~~s~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      .+++ ...+.. +..++.+.+|+............. ..+....+++++..+++++.++.+++|+..
T Consensus       377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence            9988 544444 688999999999988776555544 789999999999999999999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=5.4e-24  Score=176.81  Aligned_cols=288  Identities=14%  Similarity=0.135  Sum_probs=209.6

Q ss_pred             CCcEEEEEccccccccccccccccccccceEEeeeeeEeecC--CCceEEEEEecCCC-EEEEecCCCeEEEEECCCcce
Q 012712           19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH--RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERV   95 (458)
Q Consensus        19 d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~   95 (458)
                      ...++|||+..-+....                     +..|  ...+.++.|+.... .+++.+.|..+++|.-.....
T Consensus        11 gd~~kl~D~s~~~~~~~---------------------~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~   69 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSE---------------------YVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP   69 (673)
T ss_pred             CCceEEeecccccCccc---------------------cccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC
Confidence            44699999985444322                     2222  23489999987653 233445678899997443211


Q ss_pred             -eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCe
Q 012712           96 -KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL  174 (458)
Q Consensus        96 -~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  174 (458)
                       +..........-.|++...  ...++++++..+.|+|||++.....  +.+++|...|+++.++... .+|++++..|.
T Consensus        70 ~Vp~~~k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~kl~h--r~lkdh~stvt~v~YN~~D-eyiAsvs~gGd  144 (673)
T KOG4378|consen   70 EVPRVRKLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRAKLIH--RFLKDHQSTVTYVDYNNTD-EYIASVSDGGD  144 (673)
T ss_pred             ccceeeccccchHHHHhhhh--cceeeeccCcCceeeehhhHHHHHh--hhccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence             1111111122344555444  5579999999999999999843333  3488999999999999888 68999999999


Q ss_pred             EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      |.+..+.++.....+...         ....+.-+.|+|....+|.+++.+|.|.+||+.....              ..
T Consensus       145 iiih~~~t~~~tt~f~~~---------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--------------~~  201 (673)
T KOG4378|consen  145 IIIHGTKTKQKTTTFTID---------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--------------IF  201 (673)
T ss_pred             EEEEecccCccccceecC---------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------------cc
Confidence            999999998877776532         2334678899998667888899999999999987652              24


Q ss_pred             ccccccccceeEEEeCCCCc-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          255 NLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       255 ~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                      .....|..+...++|+|... +|++.+ |..|++||.....                                      .
T Consensus       202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--------------------------------------s  243 (673)
T KOG4378|consen  202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--------------------------------------S  243 (673)
T ss_pred             chhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--------------------------------------c
Confidence            45667889999999999775 556655 5589999988632                                      2


Q ss_pred             ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC-CeEEEEeecCCceeeEEEecCCC
Q 012712          333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHS  397 (458)
Q Consensus       333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~  397 (458)
                      ...+....   +...++| +++|.+|+.|+..|.|..||+.. ..++.++..|...|++++|-|.-
T Consensus       244 ~~~l~y~~---Plstvaf-~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  244 TDRLTYSH---PLSTVAF-SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cceeeecC---Ccceeee-cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            22222111   2678898 99999999999999999999975 46889999999999999997653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=1.4e-24  Score=173.97  Aligned_cols=265  Identities=20%  Similarity=0.290  Sum_probs=190.7

Q ss_pred             eEeecCCCceEEEEEecCC--CEEEEecCCCeEEEEECCC----------------cceeeeeccCCCcceeEEEEccCC
Q 012712           55 AKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKT----------------ERVKLSFHSGHNDNVFQAKIMPFT  116 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~i~~~~~~~~~  116 (458)
                      ...-+|.+.|+.+.-++-+  .+.|+=+..|.|.||++..                .+++.++ .+|...=++++|||..
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIK  223 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccc
Confidence            3445788889888888765  4666667889999999753                2345555 7899999999999953


Q ss_pred             CCeEEEEEcCCCcEEEeecccccce-eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712          117 DDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID  195 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  195 (458)
                      . ..|++|.--+.|++|...++... -...+.+|+..|..++|+|....+|++|+-||+|+|||+|.+.....+....  
T Consensus       224 ~-g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA--  300 (440)
T KOG0302|consen  224 T-GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA--  300 (440)
T ss_pred             c-cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec--
Confidence            3 35788888889999999887643 2344778999999999999988999999999999999999985444333211  


Q ss_pred             CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--
Q 012712          196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--  273 (458)
Q Consensus       196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  273 (458)
                            +...|+.++|+.. ..+|++|+.||+++|||+|..+..            .+...+..|..+|+++.|+|..  
T Consensus       301 ------h~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~------------~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  301 ------HNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSG------------QPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             ------cCCceeeEEccCC-cceeeecCCCceEEEEEhhhccCC------------CcceeEEeccCCeeEEEeccccCc
Confidence                  5668999999997 459999999999999999987632            2345667789999999999964  


Q ss_pred             cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712          274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP  353 (458)
Q Consensus       274 ~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~  353 (458)
                      .+.+++.+++|.+||+................                      -...+.+.+.-|.....+..+.| ++
T Consensus       362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~----------------------L~dlPpQLLFVHqGQke~KevhW-H~  418 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEG----------------------LQDLPPQLLFVHQGQKEVKEVHW-HR  418 (440)
T ss_pred             eEEeccCCCcEEEEEeeccCChhhhccccccc----------------------hhcCCceeEEEecchhHhhhhee-cc
Confidence            34455557799999997643321111000000                      00122333444444445788888 55


Q ss_pred             C-CcEEEEecCCC
Q 012712          354 K-CEYVVSGSDCG  365 (458)
Q Consensus       354 ~-~~~l~~~~~dg  365 (458)
                      . -.+|++.+.||
T Consensus       419 QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  419 QIPGLLVSTAIDG  431 (440)
T ss_pred             CCCCeEEEecccc
Confidence            4 34777777787

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.93  E-value=2.2e-24  Score=164.64  Aligned_cols=303  Identities=15%  Similarity=0.121  Sum_probs=203.9

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      ...+++|.+.|+++.|..+++ |.+|..-|.|++|++.+.+....+.-.|...|+.+.-.|  + ..+.+-+.|+.+.+|
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLLILW   82 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceEEEE
Confidence            456779999999999988765 889999999999999998887777446788999999988  5 678999999999999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC-eEEEEeCC---------CCCccceeeecccCCCCcceee
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHFDLR---------TGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      ++.....+..     |.-.++++.|.+..   +...+... ....++-+         .+...+.. ..+.   +.....
T Consensus        83 ~ia~s~~i~i-----~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~-i~dd---~~~~Kl  150 (323)
T KOG0322|consen   83 TIAYSAFISI-----HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ-IADD---SERSKL  150 (323)
T ss_pred             EccCcceEEE-----eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeE-ccCc---hhcccc
Confidence            9976554333     44445556555432   22221111 11111111         11111111 1110   011123


Q ss_pred             cceEEEEECCCCC--cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-
Q 012712          204 VNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-  280 (458)
Q Consensus       204 ~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  280 (458)
                      +.+.|..+.-+.+  -++++|.++|.+.+||+.++...-.  +...   .........|..++.++.|.+.-..=++++ 
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~--~~~~---~kv~~~~ash~qpvlsldyas~~~rGisgga  225 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ--LPQS---SKVESPNASHKQPVLSLDYASSCDRGISGGA  225 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec--cccc---cccccchhhccCcceeeeechhhcCCcCCCc
Confidence            3456655433222  3567788999999999998732211  1110   011223445788999999987544444444 


Q ss_pred             CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712          281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS  360 (458)
Q Consensus       281 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~  360 (458)
                      ++.+..|+++......+++                                ....+ .+.+   +..+.. -||++.+|+
T Consensus       226 ~dkl~~~Sl~~s~gslq~~--------------------------------~e~~l-knpG---v~gvrI-RpD~KIlAT  268 (323)
T KOG0322|consen  226 DDKLVMYSLNHSTGSLQIR--------------------------------KEITL-KNPG---VSGVRI-RPDGKILAT  268 (323)
T ss_pred             cccceeeeeccccCccccc--------------------------------ceEEe-cCCC---ccceEE-ccCCcEEee
Confidence            5678888887532211110                                11111 1222   666776 999999999


Q ss_pred             ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      ++.|++||+|+.++..++..++-|.+.|++++|+|+...+|+++.|++|.+|++
T Consensus       269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999999999999999986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2.4e-24  Score=182.83  Aligned_cols=304  Identities=16%  Similarity=0.192  Sum_probs=217.3

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC--CEEEEec
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG--DILISGS   80 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~   80 (458)
                      .++-.|.|..|++|+.||+||||.+.||.++.+                     +. -.+.|.|++|+|.+  ..||++-
T Consensus       405 ~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~---------------------~~-~d~~I~~vaw~P~~~~~vLAvA~  462 (733)
T KOG0650|consen  405 SISVDPSGEWLASGSDDGTVRIWEIATGRCVRT---------------------VQ-FDSEIRSVAWNPLSDLCVLAVAV  462 (733)
T ss_pred             EEEecCCcceeeecCCCCcEEEEEeecceEEEE---------------------Ee-ecceeEEEEecCCCCceeEEEEe
Confidence            345678899999999999999999999999855                     22 34589999999976  4566555


Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEE----cCCCcEEEeeccccccee--eeeccccccceE
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC----AADGQVRHAQILERGGVE--TKLLGKHQGRAH  154 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~----~~dg~i~vw~~~~~~~~~--~~~~~~~~~~v~  154 (458)
                      .+. +.|-+..-|..+...   .             ....|+++    ..++.+..|.-...+...  ....-.|...|.
T Consensus       463 ~~~-~~ivnp~~G~~~e~~---~-------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~  525 (733)
T KOG0650|consen  463 GEC-VLIVNPIFGDRLEVG---P-------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR  525 (733)
T ss_pred             cCc-eEEeCccccchhhhc---c-------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccc
Confidence            444 666665444221111   0             11111111    224567778654322211  122445889999


Q ss_pred             EEEEcCCCCeEEEEecCC---CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          155 KLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      .+.|+..| .+|++...+   ..|.|.++........|..          ..+.+.++.|+|. ..+|++++. ..|++|
T Consensus       526 ~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ~PF~k----------skG~vq~v~FHPs-~p~lfVaTq-~~vRiY  592 (733)
T KOG0650|consen  526 QVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQSPFRK----------SKGLVQRVKFHPS-KPYLFVATQ-RSVRIY  592 (733)
T ss_pred             eeeeecCC-ceEEEeccCCCcceEEEEecccccccCchhh----------cCCceeEEEecCC-CceEEEEec-cceEEE
Confidence            99999999 567766543   4688999877665544432          3446899999998 556666665 579999


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      |+...++.+.              +.. ....|..++.+|.|.-|+.++ +..+..||+.-.                  
T Consensus       593 dL~kqelvKk--------------L~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldls------------------  639 (733)
T KOG0650|consen  593 DLSKQELVKK--------------LLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS------------------  639 (733)
T ss_pred             ehhHHHHHHH--------------Hhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC------------------
Confidence            9988664332              222 356799999999998888888 557888998764                  


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec------C---CeEEEEe
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK------G---GELIRVI  381 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~------~---~~~~~~~  381 (458)
                                         .++.+.+.-|...  +++++| ++.-.++++|+.||++.||.-.      .   --++..+
T Consensus       640 -------------------skPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L  697 (733)
T KOG0650|consen  640 -------------------SKPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL  697 (733)
T ss_pred             -------------------cchhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence                               3456777778875  899998 9999999999999999998532      1   1356778


Q ss_pred             ecCCce----eeEEEecCCCCeEEEeecCCcEEEec
Q 012712          382 EADRHV----VNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       382 ~~~~~~----v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ++|...    |..+.|+|...+|++++.||+|++|.
T Consensus       698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            888765    88999999999999999999999983

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=1.8e-23  Score=164.68  Aligned_cols=323  Identities=15%  Similarity=0.157  Sum_probs=220.6

Q ss_pred             eeccCCCcceeEEEEccCC---CCeEEEEEcCCCcEEEeecccccce---eeeeccccccceEEEEEcCC---CCeEEEE
Q 012712           98 SFHSGHNDNVFQAKIMPFT---DDRSIVTCAADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPG---SPHVFYT  168 (458)
Q Consensus        98 ~~~~~~~~~i~~~~~~~~~---~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~~l~s  168 (458)
                      .+...|..+|..++|.++.   +...+++++. ..+.+|+......+   +...-..|......++|+-+   +.-++++
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            3446788999999998642   3345666665 57888887655422   22112236666777787643   3357888


Q ss_pred             ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712          169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      ++.-|.|++.|+.+++....+..          +...|+.+.++|+.++++++++.|..|++|++++......       
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~g----------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V-------  173 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRG----------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV-------  173 (385)
T ss_pred             ecceeEEEEEecchhhhccceec----------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE-------
Confidence            88999999999999988877764          5568999999999889999999999999999998764321       


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT  327 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (458)
                           ..-..+|...|.++.|+++|.+|++++.| ++++|++........+...        ..+.++........  ..
T Consensus       174 -----fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s--------~~~~~~~t~~pfpt--~~  238 (385)
T KOG1034|consen  174 -----FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS--------ITYSPNKTTRPFPT--PK  238 (385)
T ss_pred             -----ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh--------cccCCCCccCcCCc--cc
Confidence                 22345788999999999999999999855 8999999854322221111        00111110000000  00


Q ss_pred             ccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec-CC-------------eEEEEeecCCceeeEEE-
Q 012712          328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GG-------------ELIRVIEADRHVVNCIE-  392 (458)
Q Consensus       328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~-------------~~~~~~~~~~~~v~~~~-  392 (458)
                      ...+...+-.-|.+.  |-|+.||   |+++++=+-++.|..|... -.             ..+.++.-....|.-+. 
T Consensus       239 ~~fp~fst~diHrny--VDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf  313 (385)
T KOG1034|consen  239 THFPDFSTTDIHRNY--VDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF  313 (385)
T ss_pred             cccccccccccccch--HHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence            000111122345553  6677774   6899998889999999861 11             11223333334455554 


Q ss_pred             -ecCCCCeEEEeecCCcEEEecCCccccccc---ccc--cccEEEEEEecCCcEEEeeecCCceEEEEEecC
Q 012712          393 -PHPHSTVLASSGIESDIKILTPNAADRATL---PTN--IEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK  458 (458)
Q Consensus       393 -~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~--~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  458 (458)
                       |.|-+++||.|...|.|.+||++..+....   ..+  ...|...+||.||..|+....|++|.=||++.+
T Consensus       314 ~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~~  385 (385)
T KOG1034|consen  314 AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVSA  385 (385)
T ss_pred             eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeecC
Confidence             557789999999999999999998766322   222  234999999999999999999999999998753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-23  Score=174.85  Aligned_cols=215  Identities=18%  Similarity=0.263  Sum_probs=181.8

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      ..++++|+..+.|+|||+. .+++.                    +.+++|+..|+++.++....+||+++..|.|.|..
T Consensus        91 S~y~~sgG~~~~Vkiwdl~-~kl~h--------------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~  149 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLR-AKLIH--------------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHG  149 (673)
T ss_pred             ceeeeccCcCceeeehhhH-HHHHh--------------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEe
Confidence            4789999999999999999 44442                    35899999999999999999999999999999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC  169 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  169 (458)
                      +.++.....+..+....|.-+.|+|+ ...+|.+++.+|.|.+||+....... .....|..+...|+|+|.++.+|++.
T Consensus       150 ~~t~~~tt~f~~~sgqsvRll~ys~s-kr~lL~~asd~G~VtlwDv~g~sp~~-~~~~~HsAP~~gicfspsne~l~vsV  227 (673)
T KOG4378|consen  150 TKTKQKTTTFTIDSGQSVRLLRYSPS-KRFLLSIASDKGAVTLWDVQGMSPIF-HASEAHSAPCRGICFSPSNEALLVSV  227 (673)
T ss_pred             cccCccccceecCCCCeEEEeecccc-cceeeEeeccCCeEEEEeccCCCccc-chhhhccCCcCcceecCCccceEEEe
Confidence            99988777664444566779999993 34567789999999999997766554 33678999999999999998999999


Q ss_pred             cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712          170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD  249 (458)
Q Consensus       170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  249 (458)
                      +.|..|.+||.+..+....+.           ...+...++|.++ |.+|+.|...|.|..||++..+            
T Consensus       228 G~Dkki~~yD~~s~~s~~~l~-----------y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k------------  283 (673)
T KOG4378|consen  228 GYDKKINIYDIRSQASTDRLT-----------YSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTK------------  283 (673)
T ss_pred             cccceEEEeecccccccceee-----------ecCCcceeeecCC-ceEEEeecCCceEEEEecccCC------------
Confidence            999999999999877766665           4447899999997 7999999999999999999875            


Q ss_pred             CcCCCccccccccceeEEEeCCCC
Q 012712          250 YFCPPNLIGDEQVGITGLAFSDQS  273 (458)
Q Consensus       250 ~~~~~~~~~~~~~~i~~~~~~~~~  273 (458)
                        .|......|...|++++|-|.-
T Consensus       284 --~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  284 --APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             --CCceEeeecccceeEEEeeecc
Confidence              4556677788899999998865

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.92  E-value=2.5e-23  Score=179.32  Aligned_cols=275  Identities=12%  Similarity=0.184  Sum_probs=209.0

Q ss_pred             ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      .|..++|-|||..|+.+..+ .+.+||..+|..+..+ ++|...|++++|+.  ||+.+++|+.|..|.+|+-.-...+ 
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L-   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL-   88 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEcc--CCceeccCCCceeEEEeccccccee-
Confidence            89999999999888776554 6999999999988877 89999999999999  9999999999999999986433222 


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                         -..|++.|.|+.|+|-. +.|++++-. ..-+|........+ .+           ....+.+.+|..| |.+++.|
T Consensus        89 ---kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K-~k-----------ss~R~~~CsWtnD-GqylalG  150 (1081)
T KOG1538|consen   89 ---KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK-HK-----------SSSRIICCSWTND-GQYLALG  150 (1081)
T ss_pred             ---eeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh-hh-----------hheeEEEeeecCC-CcEEEEe
Confidence               23599999999999988 677887753 46688766554322 11           4446899999998 7999999


Q ss_pred             cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-----cEEEEecCC-cEEEEEccCCCCCC
Q 012712          223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-----ELLVSYNDE-FIYLFTQDMGLGPN  296 (458)
Q Consensus       223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~~-~i~i~~~~~~~~~~  296 (458)
                      -.+|+|.+-+-...+.             .......+.+.+|.+++|+|..     ..++...-+ ++..|.+...    
T Consensus       151 ~~nGTIsiRNk~gEek-------------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~----  213 (1081)
T KOG1538|consen  151 MFNGTISIRNKNGEEK-------------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK----  213 (1081)
T ss_pred             ccCceEEeecCCCCcc-------------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----
Confidence            9999999875433221             1123344567899999999974     245555533 4555555431    


Q ss_pred             CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe
Q 012712          297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE  376 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  376 (458)
                                                         .+..-+.-.-  ...++.+ -++|.|+..|+.|+.+.+|-. .|-
T Consensus       214 -----------------------------------~Igk~r~L~F--dP~CisY-f~NGEy~LiGGsdk~L~~fTR-~Gv  254 (1081)
T KOG1538|consen  214 -----------------------------------QIGKDRALNF--DPCCISY-FTNGEYILLGGSDKQLSLFTR-DGV  254 (1081)
T ss_pred             -----------------------------------eecccccCCC--Cchhhee-ccCCcEEEEccCCCceEEEee-cCe
Confidence                                               1110000000  1346666 799999999999999999975 677


Q ss_pred             EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          377 LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       377 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      .+.++......|+.++..|++++++.|+.||+|-.|++..
T Consensus       255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            8888877788999999999999999999999999998753

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=6.7e-23  Score=166.08  Aligned_cols=299  Identities=15%  Similarity=0.176  Sum_probs=207.1

Q ss_pred             CCceEEEEEecCCC-EEEEecCCCeEEEEECCCccee--------eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVK--------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        61 ~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      ..+|.++.|.++.. .||||+.|..|++|-+..++.-        ...+..|...|+++.|+|  +|++|++|+.+|.|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLASGGDGGEVF   90 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeeeecCCCceEE
Confidence            46899999998775 9999999999999988654321        223478999999999999  999999999999999


Q ss_pred             Eeecc--------c------ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712          132 HAQIL--------E------RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR  197 (458)
Q Consensus       132 vw~~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  197 (458)
                      +|...        +      ...+..+.+.+|...|..++|+|++ ..+++++.|..+++||+..+.....+..      
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~d------  163 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDD------  163 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccc------
Confidence            99876        2      1123445577899999999999999 7899999999999999999988776653      


Q ss_pred             CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712          198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV  277 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (458)
                          +...+..++|.|- .+++++-+.|...+.+.+...+.                         +.++..   ...++
T Consensus       164 ----h~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~-------------------------~~~~~~---~~m~~  210 (434)
T KOG1009|consen  164 ----HEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQV-------------------------IKRHGL---DIMPA  210 (434)
T ss_pred             ----cccccceeecchh-hhhhhhhccCcccceeeeeeeee-------------------------eeeeee---eEeee
Confidence                4457899999997 68999999998777777665432                         111111   00011


Q ss_pred             Eec-CC---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712          278 SYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP  353 (458)
Q Consensus       278 ~~~-~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~  353 (458)
                      -.. .+   ..++|.-++                                                 .......++| +|
T Consensus       211 ~~~~~~e~~s~rLfhDeT-------------------------------------------------lksFFrRlsf-TP  240 (434)
T KOG1009|consen  211 KAFNEREGKSTRLFHDET-------------------------------------------------LKSFFRRLSF-TP  240 (434)
T ss_pred             cccCCCCcceeeeeecCc-------------------------------------------------hhhhhhhccc-CC
Confidence            000 11   123332221                                                 1123456666 88


Q ss_pred             CCcEEEEecC----C-----CeEEEEEecC-CeEEEEeecCCceeeEEEecC------------------CCCeEEEeec
Q 012712          354 KCEYVVSGSD----C-----GRIFIWKKKG-GELIRVIEADRHVVNCIEPHP------------------HSTVLASSGI  405 (458)
Q Consensus       354 ~~~~l~~~~~----d-----g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~------------------~~~~l~s~~~  405 (458)
                      ||.+|++.+.    .     +..++|+-.. .++...+.+...+...+.|+|                  -+-.+|.++ 
T Consensus       241 dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-  319 (434)
T KOG1009|consen  241 DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-  319 (434)
T ss_pred             CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence            8888776431    1     2334444322 233444444444444454443                  223445554 


Q ss_pred             CCcEEEecCCccccccc--ccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712          406 ESDIKILTPNAADRATL--PTNIEQVCFSIYSADYWWSKSQNFSCSILL  452 (458)
Q Consensus       406 d~~i~iw~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~  452 (458)
                      -+.+.+||.+..++...  .-|-..++.++|++||..|+..+.||-.-+
T Consensus       320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            56899999998766533  347778999999999999999999996544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6.9e-22  Score=175.77  Aligned_cols=384  Identities=14%  Similarity=0.149  Sum_probs=248.7

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR   84 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   84 (458)
                      .+++.+...+..- +-.+.+|+..++.....                 ....-..|...+++.++||+++++|+|..||.
T Consensus       167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~-----------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr  228 (792)
T KOG1963|consen  167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTS-----------------SRDITVHHTFNITCVALSPNERYLAAGDSDGR  228 (792)
T ss_pred             EEcCCceEEEEEE-eeeEEEEEecccceeec-----------------cchhhhhhcccceeEEeccccceEEEeccCCc
Confidence            3455555544444 44577888886441100                 01112347777999999999999999999999


Q ss_pred             EEEEECCC---cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           85 VILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        85 i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      |.+|.--.   .....+.+.=|..+|.+++|++  +|.+|++|+..|.+.+|.+.+++..   .++.-.++|..+.++||
T Consensus       229 I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~~T~~kq---fLPRLgs~I~~i~vS~d  303 (792)
T KOG1963|consen  229 ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS--DGAYLLSGGREGVLVLWQLETGKKQ---FLPRLGSPILHIVVSPD  303 (792)
T ss_pred             EEEEeccccccccccceEEEecccccceeEEec--CCceEeecccceEEEEEeecCCCcc---cccccCCeeEEEEEcCC
Confidence            99996432   2223334456889999999999  9999999999999999999988732   26667889999999999


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC-cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR-NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG  240 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  240 (458)
                      + .+.+....|..|.+....+.+....+......... ......-.+.++++|. .+.++-.+..|.|.+||+-+.+...
T Consensus       304 s-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~  381 (792)
T KOG1963|consen  304 S-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIY  381 (792)
T ss_pred             C-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceee
Confidence            9 56677778999999987665544444322221000 0012334577889995 6788888999999999998877654


Q ss_pred             CccCCCCCCCcCCCcccc---ccccceeEEEeCCCCcEEEEec---------CC--cEEEEEccCCCCCCCCCCCCcccc
Q 012712          241 STDFGQPADYFCPPNLIG---DEQVGITGLAFSDQSELLVSYN---------DE--FIYLFTQDMGLGPNPPPSSPVSTR  306 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~---------~~--~i~i~~~~~~~~~~~~~~~~~~~~  306 (458)
                      .+....       .....   .+...++.++.+..|.++++..         ++  .+++|..........         
T Consensus       382 ~~~v~~-------~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~---------  445 (792)
T KOG1963|consen  382 KLQVCD-------ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI---------  445 (792)
T ss_pred             eEEEEe-------ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE---------
Confidence            432211       11111   2345678888888899998763         22  378887665322111         


Q ss_pred             ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEecCC----------
Q 012712          307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKGG----------  375 (458)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~----------  375 (458)
                                              -.......|...  +...++..+... ..++++.||.+++|-+.+.          
T Consensus       446 ------------------------L~T~I~~PH~~~--~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W  499 (792)
T KOG1963|consen  446 ------------------------LNTKINNPHGNA--FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNW  499 (792)
T ss_pred             ------------------------EEEEEecCCCce--eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccce
Confidence                                    112333456665  333333344433 8899999999999988432          


Q ss_pred             eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc-cccccccccc-ccEEEEEEecCC--cEEEeeecCCceE
Q 012712          376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA-ADRATLPTNI-EQVCFSIYSADY--WWSKSQNFSCSIL  451 (458)
Q Consensus       376 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~-~~v~~~~~s~d~--~~l~s~~~d~~i~  451 (458)
                      .+...-.-|..++++++|+.||..|+ ++.|++|.+||..+ .++....+.. .++..+.|....  ...+.......+.
T Consensus       500 ~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  578 (792)
T KOG1963|consen  500 TCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLS  578 (792)
T ss_pred             EEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEe
Confidence            22222223778899999999997665 56789999999998 4443332221 223333333322  1222333455677


Q ss_pred             EEEEe
Q 012712          452 LFEWL  456 (458)
Q Consensus       452 ~w~~~  456 (458)
                      +|+.+
T Consensus       579 ~WNll  583 (792)
T KOG1963|consen  579 VWNLL  583 (792)
T ss_pred             hHhhh
Confidence            77754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.91  E-value=4.1e-23  Score=157.80  Aligned_cols=301  Identities=13%  Similarity=0.138  Sum_probs=202.9

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc-ccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD  179 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  179 (458)
                      .+|.+.++++.|-.   ..+|.++...|.+++|++.+.+....  +. .+...|+.+.--|++  .+.+-+.|+.+.+|+
T Consensus        11 Rp~~~~v~s~~fqa---~~rL~sg~~~G~V~~w~lqt~r~~~~--~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen   11 RPHSSSVTSVLFQA---NERLMSGLSVGIVKMWVLQTERDLPL--IRLFGRLFITNLQSIPND--SLDTQGRDPLLILWT   83 (323)
T ss_pred             ccccchheehhhcc---chhhhcccccceEEEEEeecCccchh--hhhhccceeeceeecCCc--chhhcCCCceEEEEE
Confidence            58899999999985   45699999999999999998877665  44 577889999999976  478999999999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC-eEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      +.-+..+..             +...++++.|.+.   -+...+... ..-.|+-+..........+.+.....+.....
T Consensus        84 ia~s~~i~i-------------~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~  147 (323)
T KOG0322|consen   84 IAYSAFISI-------------HSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER  147 (323)
T ss_pred             ccCcceEEE-------------eeeeccccccccc---eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence            987654432             2234566666553   122222221 22233333222222222222222222222223


Q ss_pred             ccccceeEEEeCCC-C-c-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712          259 DEQVGITGLAFSDQ-S-E-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ  334 (458)
Q Consensus       259 ~~~~~i~~~~~~~~-~-~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (458)
                      ...+.+.+..+..+ + + ++++|. .+.+.+||+.++.....++.                            ..+...
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~----------------------------~~kv~~  199 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ----------------------------SSKVES  199 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc----------------------------cccccc
Confidence            33466777665432 3 3 344555 45799999998643333221                            022334


Q ss_pred             eecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC--eE--EEEeecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712          335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG--EL--IRVIEADRHVVNCIEPHPHSTVLASSGIESDIK  410 (458)
Q Consensus       335 ~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  410 (458)
                      ....|..+  +.++.| .+.-..=++|+.+..+..|+++..  .+  -.++.-..-.|..+.+-||++.+||++.|+.||
T Consensus       200 ~~ash~qp--vlsldy-as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiR  276 (323)
T KOG0322|consen  200 PNASHKQP--VLSLDY-ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIR  276 (323)
T ss_pred             chhhccCc--ceeeee-chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEE
Confidence            44556654  888888 666556677888888999988643  21  122222233588899999999999999999999


Q ss_pred             EecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          411 ILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       411 iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ||+..+...+ .+..|...|.+++|+||...+|.++.|++|-+|+.
T Consensus       277 Vyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  277 VYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999998776 66788899999999999999999999999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=8.4e-24  Score=193.02  Aligned_cols=251  Identities=21%  Similarity=0.291  Sum_probs=195.3

Q ss_pred             CCceEEEEEecCCCE----EEEecCCCeEEEEECCCc---c---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           61 RGCVNTVSFNTDGDI----LISGSDDRRVILWDWKTE---R---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~----l~s~~~d~~i~iwd~~~~---~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      ...-+.++|.+.|..    ||.|..||.|.+||...-   .   .+.+ ...|.+.|..+.|+++ .+++||+|+.||.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-~~~h~G~V~gLDfN~~-q~nlLASGa~~geI  141 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT-KSKHTGPVLGLDFNPF-QGNLLASGADDGEI  141 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh-hcccCCceeeeecccc-CCceeeccCCCCcE
Confidence            356778999987755    888999999999998652   1   2233 3689999999999994 55699999999999


Q ss_pred             EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      .|||+...+......-....+.|.+++|+..-.++|++++.+|.+.|||++..+.+-.+....        ....+..++
T Consensus       142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~--------~~~~~S~l~  213 (1049)
T KOG0307|consen  142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP--------GRMHCSVLA  213 (1049)
T ss_pred             EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC--------Cccceeeee
Confidence            999998866544322223567899999999877899999999999999999887665554322        223578999


Q ss_pred             ECCCCCcEEEEecCCC---eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEec-CCcEE
Q 012712          211 IDPRNANLFAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIY  285 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~  285 (458)
                      |+|++...+++++.|.   .|.+||+|.-.              .+.....+|...|.++.|++.+ ++|++++ |+.|.
T Consensus       214 WhP~~aTql~~As~dd~~PviqlWDlR~as--------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  214 WHPDHATQLLVASGDDSAPVIQLWDLRFAS--------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             eCCCCceeeeeecCCCCCceeEeecccccC--------------CchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence            9999888888888764   58999998754              3455667899999999999987 6777776 66899


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEecCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDC  364 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~d  364 (458)
                      +|+.++++                                      .+..+....+  ++..+.| .|..- .+++++-|
T Consensus       280 ~wN~~tgE--------------------------------------vl~~~p~~~n--W~fdv~w-~pr~P~~~A~asfd  318 (1049)
T KOG0307|consen  280 CWNPNTGE--------------------------------------VLGELPAQGN--WCFDVQW-CPRNPSVMAAASFD  318 (1049)
T ss_pred             EecCCCce--------------------------------------EeeecCCCCc--ceeeeee-cCCCcchhhhheec
Confidence            99999853                                      3344444333  4888998 77665 78889999


Q ss_pred             CeEEEEEecCCe
Q 012712          365 GRIFIWKKKGGE  376 (458)
Q Consensus       365 g~i~iwd~~~~~  376 (458)
                      |.|.||.+....
T Consensus       319 gkI~I~sl~~~~  330 (1049)
T KOG0307|consen  319 GKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeeecCC
Confidence            999999987553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.91  E-value=4.1e-23  Score=162.90  Aligned_cols=302  Identities=13%  Similarity=0.138  Sum_probs=215.1

Q ss_pred             EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEE-EcCCCcEEEeecccccceeee
Q 012712           66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADGQVRHAQILERGGVETK  144 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~dg~i~vw~~~~~~~~~~~  144 (458)
                      -.+|||+|+++|+++.- .+.|-|.++-+..+.+  ..-..|..+.|..  |..+++. ...++.|.+|++...+.... 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~ck-   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYCK-   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeec--cceeeeeeeeccceEEEEEeecceeEEE-
Confidence            36799999999999875 7888888887765554  2346788899998  8777654 55688999999988876655 


Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                       +.....++.+++|+|+|+++|.+...+-.|.+|.+.+.+....-.           ....+..++|+|| +++.+.++.
T Consensus        87 -Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-----------pK~~~kg~~f~~d-g~f~ai~sR  153 (447)
T KOG4497|consen   87 -IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-----------PKTNVKGYAFHPD-GQFCAILSR  153 (447)
T ss_pred             -eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-----------cccCceeEEECCC-Cceeeeeec
Confidence             777788999999999998899999999999999998876543221           2224688999998 677777664


Q ss_pred             CCeEEEEecC---CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---CcEEEEEccCCCCCCCC
Q 012712          225 DEYTRLYDIR---KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       225 dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~i~i~~~~~~~~~~~~  298 (458)
                      -.....+.+.   .-.+++.               ..-..-..+.+.|+|||..||.-..   -.|+.|....       
T Consensus       154 rDCkdyv~i~~c~~W~ll~~---------------f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l-------  211 (447)
T KOG4497|consen  154 RDCKDYVQISSCKAWILLKE---------------FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL-------  211 (447)
T ss_pred             ccHHHHHHHHhhHHHHHHHh---------------cCCCcccccCceECCCCcEEEEecchhhheeeeeeecc-------
Confidence            3211111111   1111111               1112345678999999998886442   1344443322       


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  378 (458)
                                                                   .+..++| +|.+++|+.|+.|+.+|+.+--+.+..
T Consensus       212 ---------------------------------------------G~k~v~w-sP~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  212 ---------------------------------------------GLKFVEW-SPCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             ---------------------------------------------ceeEEEe-ccccceEEeeccchhhhhhceeeeeeh
Confidence                                                         2777888 999999999999999988765221110


Q ss_pred             ------------------------------------------------------------EEeec------CCceeeEEE
Q 012712          379 ------------------------------------------------------------RVIEA------DRHVVNCIE  392 (458)
Q Consensus       379 ------------------------------------------------------------~~~~~------~~~~v~~~~  392 (458)
                                                                                  ..++.      ..-.+.-++
T Consensus       246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la  325 (447)
T KOG4497|consen  246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA  325 (447)
T ss_pred             hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence                                                                        01110      112366789


Q ss_pred             ecCCCCeEEEeec--CCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          393 PHPHSTVLASSGI--ESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       393 ~s~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      |++|..+++|-.+  -+.+.+||+...+...+.....+|.+..|.|....|+.+.....+++|-
T Consensus       326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence            9999999998754  4689999999998888888888999999999998777766666677773

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.3e-23  Score=177.32  Aligned_cols=306  Identities=14%  Similarity=0.209  Sum_probs=212.3

Q ss_pred             CeEEEeeCCCcEEEE--EccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712           11 KRARTSVDKALVDVW--LRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW   88 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw   88 (458)
                      ...++..+|...++|  ++. +-.+...+..+........+.+.+..++..|...|+.++|.|....|++++.|++|++|
T Consensus       243 ~~~~g~d~~l~~~l~~~tla-~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W  321 (577)
T KOG0642|consen  243 SISVGADEDLMSRLGLGTLA-GLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW  321 (577)
T ss_pred             CccccCchHHHHhhcccchh-cccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence            346666777888888  554 33333322211111111344566666899999999999999999999999999999999


Q ss_pred             ECCC--------cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--------eeeeeccccccc
Q 012712           89 DWKT--------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--------VETKLLGKHQGR  152 (458)
Q Consensus        89 d~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~~  152 (458)
                      +++.        -+++.++ .+|.++|.|+++.+  ++..+++|+-||+|+.|++.....        .....+.+|++.
T Consensus       322 nLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~--n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda  398 (577)
T KOG0642|consen  322 NLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPS--NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA  398 (577)
T ss_pred             hhcccCCccccceeeeEEE-ecccCceEEEEecC--CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc
Confidence            9932        2456666 79999999999999  999999999999999997753221        222347899999


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      ++.+++++.. ..|++++.||+++.|+.....+ ..+....        ..+...++.+-.....+.++   +.....++
T Consensus       399 vw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~--------e~g~Plsvd~~ss~~a~~~~---s~~~~~~~  465 (577)
T KOG0642|consen  399 VWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPK--------EHGYPLSVDRTSSRPAHSLA---SFRFGYTS  465 (577)
T ss_pred             eeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCcc--------ccCCcceEeeccchhHhhhh---hccccccc
Confidence            9999999987 6799999999999999876655 2232211        11223455554331122222   22333333


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM  312 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
                      +...+..                         ..+.+.+.                 ..                     
T Consensus       466 ~~~~ev~-------------------------s~~~~~~s-----------------~~---------------------  482 (577)
T KOG0642|consen  466 IDDMEVV-------------------------SDLLIFES-----------------SA---------------------  482 (577)
T ss_pred             chhhhhh-------------------------hheeeccc-----------------cC---------------------
Confidence            3332211                         00111110                 00                     


Q ss_pred             CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEE
Q 012712          313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE  392 (458)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  392 (458)
                                             ..+......+..+.. .|.+.+.+++..|+.|+++|..+++++.....|...+++++
T Consensus       483 -----------------------~~~~~~~~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla  538 (577)
T KOG0642|consen  483 -----------------------SPGPRRYPQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA  538 (577)
T ss_pred             -----------------------CCcccccCccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceeccee
Confidence                                   000000012455555 88889999999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          393 PHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       393 ~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +.|+|.+|++++.|+.+++|.+....+.
T Consensus       539 i~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  539 IDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             ecCCCceEEeecCCceeehhhccchhee
Confidence            9999999999999999999999766543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.91  E-value=4e-22  Score=157.39  Aligned_cols=373  Identities=12%  Similarity=0.101  Sum_probs=238.8

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE-ecCC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-GSDD   82 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d   82 (458)
                      +.|||+|+++|++++- .+.|-|.+|-++++-                     + .--+.|.-+.|..|..++++ ...|
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql---------------------f-~cldki~yieW~ads~~ilC~~yk~   70 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQL---------------------F-LCLDKIVYIEWKADSCHILCVAYKD   70 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHH---------------------H-HHHHHhhheeeeccceeeeeeeecc
Confidence            4689999999999955 777999997665521                     1 11345777889888866655 4668


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeE-EEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      +.|.+|++...+-...+ .....++.+++|+|  ||+. |.+...+-.|.+|.+.+.+...   ++.....+..++|+|+
T Consensus        71 ~~vqvwsl~Qpew~ckI-deg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~---~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   71 PKVQVWSLVQPEWYCKI-DEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL---LPHPKTNVKGYAFHPD  144 (447)
T ss_pred             ceEEEEEeecceeEEEe-ccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE---ecccccCceeEEECCC
Confidence            89999999988877777 45678899999999  9955 5566679999999998877654   3333455688999999


Q ss_pred             CCeEEEEecCCCeEEEEeCC---CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC--CCeEEEEecCCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--DEYTRLYDIRKY  236 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~  236 (458)
                      | ++.+.++..-....+++.   .-.....+..          .....+.+.|+|| ++.+++=..  +-.|..|..   
T Consensus       145 g-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~----------dT~DltgieWsPd-g~~laVwd~~Leykv~aYe~---  209 (447)
T KOG4497|consen  145 G-QFCAILSRRDCKDYVQISSCKAWILLKEFKL----------DTIDLTGIEWSPD-GNWLAVWDNVLEYKVYAYER---  209 (447)
T ss_pred             C-ceeeeeecccHHHHHHHHhhHHHHHHHhcCC----------CcccccCceECCC-CcEEEEecchhhheeeeeee---
Confidence            9 455544432111111111   1111222221          2335678999998 567664221  112222211   


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCC------CC--------
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPP------SS--------  301 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~------~~--------  301 (458)
                                              .-.+..++|+|.+++|+.|+.| .+++.+--+-+...++-      .+        
T Consensus       210 ------------------------~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke  265 (447)
T KOG4497|consen  210 ------------------------GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE  265 (447)
T ss_pred             ------------------------ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence                                    2467889999999999999954 67665543332221111      00        


Q ss_pred             ---CccccccccccCCCCccccCCCCC-----Ccc------cccCceeecCccceeeeeEEEEecCCCcEEEEecCC--C
Q 012712          302 ---PVSTRSEASEMGSDHTSAASPSTA-----NTD------VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC--G  365 (458)
Q Consensus       302 ---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d--g  365 (458)
                         +.........+.|...........     ...      ..++...+....  ..+--++| ++|..|+++-.+.  +
T Consensus       266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk--~g~g~laf-s~Ds~y~aTrnd~~Pn  342 (447)
T KOG4497|consen  266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK--CGAGKLAF-SCDSTYAATRNDKYPN  342 (447)
T ss_pred             hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc--cccceeee-cCCceEEeeecCCCCc
Confidence               000000001122221111111100     000      011111111111  23667788 9999999987654  6


Q ss_pred             eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeee
Q 012712          366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQN  445 (458)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  445 (458)
                      .+.+||+...+....+. ...+|....|+|....|+.+.....+++|.+........+...-.|..+.|.-+|..++-.+
T Consensus       343 alW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~  421 (447)
T KOG4497|consen  343 ALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCG  421 (447)
T ss_pred             eEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEc
Confidence            89999997766655553 45679999999999999888878889999999877777777778899999999999998888


Q ss_pred             cCC
Q 012712          446 FSC  448 (458)
Q Consensus       446 ~d~  448 (458)
                      .|-
T Consensus       422 kDa  424 (447)
T KOG4497|consen  422 KDA  424 (447)
T ss_pred             CCc
Confidence            885

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=7.9e-20  Score=167.81  Aligned_cols=330  Identities=22%  Similarity=0.357  Sum_probs=240.3

Q ss_pred             EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc-eeeeeccCCCcceeEEEE-ccCCCCe-EEEEEcC-CCcEE
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKI-MPFTDDR-SIVTCAA-DGQVR  131 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~-~~~~~~~-~l~s~~~-dg~i~  131 (458)
                      .+..|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+...+...+..+.+ .+  ++. .++..+. |+.+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP--DGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC--CcceEEeccCCCCccEE
Confidence            467899999999999999999999999999999998886 555552223346777777 66  777 5555444 99999


Q ss_pred             Eeeccc-ccceeeeeccccccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          132 HAQILE-RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       132 vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      +|+... ......  +..|...+..++|+|++. .+++++. |+.+++|++..+.....+..          +...+.++
T Consensus       138 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~  204 (466)
T COG2319         138 LWDLSTPGKLIRT--LEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAG----------HTDPVSSL  204 (466)
T ss_pred             EEEecCCCeEEEE--EecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeecc----------CCCceEEE
Confidence            999977 333333  778999999999999994 6777775 99999999998666555543          44579999


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT  288 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~  288 (458)
                      +|+|++...+++++.|+.|++||........              .....|.... ...|+|++.++++++ ++.+++|+
T Consensus       205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~  269 (466)
T COG2319         205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLR--------------STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD  269 (466)
T ss_pred             EEcCCcceEEEEecCCCcEEEEECCCCcEEe--------------eecCCCCcce-eEeECCCCCEEEEecCCCcEEEee
Confidence            9999843356666999999999877443211              0223333333 228999997777666 55899999


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                      ......                                     ....+.+|..  .+.++.| .|++..+++++.|+.+.
T Consensus       270 ~~~~~~-------------------------------------~~~~~~~~~~--~v~~~~~-~~~~~~~~~~~~d~~~~  309 (466)
T COG2319         270 LRSSSS-------------------------------------LLRTLSGHSS--SVLSVAF-SPDGKLLASGSSDGTVR  309 (466)
T ss_pred             ecCCCc-------------------------------------EEEEEecCCc--cEEEEEE-CCCCCEEEEeeCCCcEE
Confidence            886321                                     1222244433  4788888 99888888898899999


Q ss_pred             EEEecCCeEEEEee--cCCceeeEEEecCCCCeEEEe-ecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEe-e
Q 012712          369 IWKKKGGELIRVIE--ADRHVVNCIEPHPHSTVLASS-GIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKS-Q  444 (458)
Q Consensus       369 iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~  444 (458)
                      +|+...........  .|...+..+.|.+++..++.+ ..|+.+.+|+...............+..+.+++ ...... +
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  388 (466)
T COG2319         310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSG  388 (466)
T ss_pred             EEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEe
Confidence            99998887776665  788789999994343555555 678999999998876222222222388999999 544444 6


Q ss_pred             ecCCceEEEEEe
Q 012712          445 NFSCSILLFEWL  456 (458)
Q Consensus       445 ~~d~~i~~w~~~  456 (458)
                      ..++.+.+|+..
T Consensus       389 ~~~~~~~~~~~~  400 (466)
T COG2319         389 STDGTVRLWDLS  400 (466)
T ss_pred             cCCCceEEEecc
Confidence            899999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=1.7e-21  Score=150.97  Aligned_cols=275  Identities=16%  Similarity=0.228  Sum_probs=192.5

Q ss_pred             CCcEEEeeccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCC-------CeEEEEeCCCCCccceeeecccCCCC
Q 012712          127 DGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGAATELFTCRPIDDRR  198 (458)
Q Consensus       127 dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~  198 (458)
                      |+.|.+.++.... .+....+..|.+.|..++-+|-.+.+|+++..+       -.+.+|.+.................-
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            5777777765543 334445777889999999999987888877553       24679988654322111100000000


Q ss_pred             cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC--CCcEE
Q 012712          199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELL  276 (458)
Q Consensus       199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l  276 (458)
                      .....+.+.|+.|.|+ +..+++.. |..|.+|++........ .+        +.....++....++-+|+|  +|..+
T Consensus       119 dteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~va-ev--------~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVA-EV--------LSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             CHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchhe-ee--------cccccccccceecccccCCCCccceE
Confidence            0113447899999996 66777665 78899999987654211 00        0111122455678889998  78899


Q ss_pred             EEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc
Q 012712          277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE  356 (458)
Q Consensus       277 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~  356 (458)
                      ++.++.++..||+++......                                     .-..|..  .+..+.| .|+.+
T Consensus       188 ~tt~d~tl~~~D~RT~~~~~s-------------------------------------I~dAHgq--~vrdlDf-Npnkq  227 (370)
T KOG1007|consen  188 ATTSDSTLQFWDLRTMKKNNS-------------------------------------IEDAHGQ--RVRDLDF-NPNKQ  227 (370)
T ss_pred             EEeCCCcEEEEEccchhhhcc-------------------------------------hhhhhcc--eeeeccC-CCCce
Confidence            999999999999997533222                                     1223433  4889998 88876


Q ss_pred             -EEEEecCCCeEEEEEecC-CeEEEEeecCCceeeEEEecCC-CCeEEEeecCCcEEEecCCc-----------------
Q 012712          357 -YVVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKILTPNA-----------------  416 (458)
Q Consensus       357 -~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iw~~~~-----------------  416 (458)
                       +|+++++||.|+|||.+. ..+++++.+|...|.++.|+|. .++|.+++.|..|.+|....                 
T Consensus       228 ~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e  307 (370)
T KOG1007|consen  228 HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE  307 (370)
T ss_pred             EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCc
Confidence             677999999999999874 4688999999999999999996 45788999999999995321                 


Q ss_pred             -------------ccccccccccccEEEEEEecCCcEE-EeeecCCceEE
Q 012712          417 -------------ADRATLPTNIEQVCFSIYSADYWWS-KSQNFSCSILL  452 (458)
Q Consensus       417 -------------~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~d~~i~~  452 (458)
                                   +.+.++..|...|.+++||.-..|+ |+-+.||.+.|
T Consensus       308 ~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  308 DEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             chhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence                         2233556788889999999888765 67899999876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.89  E-value=3.3e-23  Score=182.73  Aligned_cols=291  Identities=20%  Similarity=0.278  Sum_probs=217.5

Q ss_pred             eEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           48 VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        48 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      +.+++.++.|.||..+|.|+.|...|.++++|+.|..++||..++..++... .+|.+.|+.++.+.  +..++++++.|
T Consensus       177 vqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~--~n~~iaaaS~D  253 (1113)
T KOG0644|consen  177 VQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSS--NNTMIAAASND  253 (1113)
T ss_pred             HHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccch--hhhhhhhcccC
Confidence            3445777888999999999999999999999999999999999999998887 89999999999998  88899999999


Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      ..|++|.+..+..+..  +.+|++.|++++|+|-     .+.+.||++++||.+-.-..  +...+. ...   ...-+.
T Consensus       254 ~vIrvWrl~~~~pvsv--LrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~--y~prp~-~~~---~~~~~~  320 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPVSV--LRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRI--YVPRPL-KFT---EKDLVD  320 (1113)
T ss_pred             ceEEEEecCCCchHHH--HhccccceeeeccCcc-----ccCCCCCceEeccccccccc--cCCCCC-Ccc---ccccee
Confidence            9999999999888766  8999999999999993     37889999999998811111  110110 000   223455


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecCC-cEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE-FIY  285 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~-~i~  285 (458)
                      ++.|... +..+++++.|+.-..|.......                     +...+.-+.++.+- .+.++.-.+ .+.
T Consensus       321 s~~~~~~-~~~f~Tgs~d~ea~n~e~~~l~~---------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~  378 (1113)
T KOG0644|consen  321 SILFENN-GDRFLTGSRDGEARNHEFEQLAW---------------------RSNLLIFVTRSSDLSSIVVTARNDHRLC  378 (1113)
T ss_pred             eeecccc-ccccccccCCcccccchhhHhhh---------------------hccceEEEeccccccccceeeeeeeEee
Confidence            6666664 67899999999888777654321                     11122222222222 233333333 688


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEecCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDC  364 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~d  364 (458)
                      +|++.+                                      +.....+.+|...  +..+.+ +|-.. ...+++.|
T Consensus       379 vwnl~~--------------------------------------g~l~H~l~ghsd~--~yvLd~-Hpfn~ri~msag~d  417 (1113)
T KOG0644|consen  379 VWNLYT--------------------------------------GQLLHNLMGHSDE--VYVLDV-HPFNPRIAMSAGYD  417 (1113)
T ss_pred             eeeccc--------------------------------------chhhhhhcccccc--eeeeee-cCCCcHhhhhccCC
Confidence            899887                                      4556677788876  455555 66544 45589999


Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      |...|||+-.|.+++.+......+....||+||..++....-|.+.|.....+
T Consensus       418 gst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  418 GSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             CceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence            99999999999888776543456778899999999998888899999876654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=8.8e-20  Score=159.09  Aligned_cols=278  Identities=14%  Similarity=0.140  Sum_probs=172.3

Q ss_pred             EEEEcCCCcEEEeecccccce-eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712          121 IVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN  199 (458)
Q Consensus       121 l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  199 (458)
                      +++...++.|.+|++.+...+ ....+. +.+....++++|+++.+++++..++.|.+|++.............      
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------   77 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------   77 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence            344467899999999643322 212232 345677899999995444555568899999987321121111111      


Q ss_pred             ceeecceEEEEECCCCCcEEEEec-CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS  278 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (458)
                        .......++++|+ ++++++++ .++.|.+|++.+......     .      .... ........++++|+|+++++
T Consensus        78 --~~~~p~~i~~~~~-g~~l~v~~~~~~~v~v~~~~~~g~~~~-----~------~~~~-~~~~~~~~~~~~p~g~~l~v  142 (330)
T PRK11028         78 --LPGSPTHISTDHQ-GRFLFSASYNANCVSVSPLDKDGIPVA-----P------IQII-EGLEGCHSANIDPDNRTLWV  142 (330)
T ss_pred             --CCCCceEEEECCC-CCEEEEEEcCCCeEEEEEECCCCCCCC-----c------eeec-cCCCcccEeEeCCCCCEEEE
Confidence              1123568999998 45555554 588999999974321110     0      0001 11234567889999998866


Q ss_pred             ec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc
Q 012712          279 YN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE  356 (458)
Q Consensus       279 ~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~  356 (458)
                      .+  ++.|.+||+.+........                               ...........   ...++| +|+|+
T Consensus       143 ~~~~~~~v~v~d~~~~g~l~~~~-------------------------------~~~~~~~~g~~---p~~~~~-~pdg~  187 (330)
T PRK11028        143 PCLKEDRIRLFTLSDDGHLVAQE-------------------------------PAEVTTVEGAG---PRHMVF-HPNQQ  187 (330)
T ss_pred             eeCCCCEEEEEEECCCCcccccC-------------------------------CCceecCCCCC---CceEEE-CCCCC
Confidence            55  4579999997632111000                               00001111111   456777 99999


Q ss_pred             EEEEecC-CCeEEEEEecC--C--eEEEEeecC------CceeeEEEecCCCCeEEEeec-CCcEEEecCCccc-ccccc
Q 012712          357 YVVSGSD-CGRIFIWKKKG--G--ELIRVIEAD------RHVVNCIEPHPHSTVLASSGI-ESDIKILTPNAAD-RATLP  423 (458)
Q Consensus       357 ~l~~~~~-dg~i~iwd~~~--~--~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~-d~~i~iw~~~~~~-~~~~~  423 (458)
                      +++++.. +++|.+|++..  +  +.+..+..+      ......+.++|++++|+++.. ++.|.+|++.... ...+.
T Consensus       188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~  267 (330)
T PRK11028        188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE  267 (330)
T ss_pred             EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence            9988876 89999999973  3  334444322      112346889999999988854 7899999986432 22222


Q ss_pred             ccc---ccEEEEEEecCCcEEEeeec-CCceEEEEE
Q 012712          424 TNI---EQVCFSIYSADYWWSKSQNF-SCSILLFEW  455 (458)
Q Consensus       424 ~~~---~~v~~~~~s~d~~~l~s~~~-d~~i~~w~~  455 (458)
                      .+.   .....++++|||++|+++.. +++|.+|+.
T Consensus       268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            222   23567899999999987665 889999975

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=4.9e-22  Score=167.90  Aligned_cols=256  Identities=18%  Similarity=0.197  Sum_probs=183.5

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      ....|+|....|++++.||++++|+++...             ......++++.+|++|.++|.|+++.+++..+.+|+.
T Consensus       298 r~l~~~~sep~lit~sed~~lk~WnLqk~~-------------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  298 RALAFHPSEPVLITASEDGTLKLWNLQKAK-------------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             hhhhcCCCCCeEEEeccccchhhhhhcccC-------------CccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            456688999999999999999999996311             2234567889999999999999999999999999999


Q ss_pred             CCeEEEEECCCc---------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           82 DRRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        82 d~~i~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      ||+|+.|++...         ..+...+.||.+.|+.+++++  ....|++++.||+++.|+...... .+.......+.
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            999999965321         123334479999999999999  888899999999999999876555 22111112233


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      ..++.+-...+...++...-+.-.+.+++.......+.   .....+......+.-+.++|. ..+.+++..|+.|+++|
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~---s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE---SSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFD  517 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeecc---ccCCCcccccCccceEEecCC-CCeeEecccCCceeccc
Confidence            44555554432223333333333344444443333332   222222212345778889997 57999999999999999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCC
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG  292 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~  292 (458)
                      ..+++...               -...|...++++++.|+|-+|++++ ++.+++|.+...
T Consensus       518 n~~~~~l~---------------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  518 NKTGKILH---------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccccccch---------------heeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            99987533               3444678899999999999999998 568999998763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=1.5e-19  Score=157.64  Aligned_cols=282  Identities=12%  Similarity=0.151  Sum_probs=173.3

Q ss_pred             EEecCCCeEEEEECCC-cc--eeeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeeccccccee-eeecccccc
Q 012712           77 ISGSDDRRVILWDWKT-ER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVE-TKLLGKHQG  151 (458)
Q Consensus        77 ~s~~~d~~i~iwd~~~-~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~-~~~~~~~~~  151 (458)
                      ++...++.|.+|++.+ ++  .+..+  .+.+....++++|  ++++|++++ .++.|.+|++.....+. .... ....
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~   80 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPG   80 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCC
Confidence            4446789999999964 33  33333  2445678899999  999887664 57889999997322221 1111 1233


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      ....++++|+++.++++...++.|.+|++.+.. .........        ....+.+++++|++...+++...++.|.+
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v  152 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------GLEGCHSANIDPDNRTLWVPCLKEDRIRL  152 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------CCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence            567899999995444444458999999997432 211111100        11235678899985444456667799999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      ||+.+.......         ...............++|+|+|+++++..  ++.|.+|+++......            
T Consensus       153 ~d~~~~g~l~~~---------~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~------------  211 (330)
T PRK11028        153 FTLSDDGHLVAQ---------EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI------------  211 (330)
T ss_pred             EEECCCCccccc---------CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE------------
Confidence            999763321100         00000001123456899999999987776  4589999997421100            


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCc----cceeeeeEEEEecCCCcEEEEecC-CCeEEEEEecCCeEEEEeec
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGH----RNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~  383 (458)
                                            .....+...    ........+.+ +|+|++++++.. ++.|.+|++........+.+
T Consensus       212 ----------------------~~~~~~~~~p~~~~~~~~~~~i~~-~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~  268 (330)
T PRK11028        212 ----------------------ECVQTLDMMPADFSDTRWAADIHI-TPDGRHLYACDRTASLISVFSVSEDGSVLSFEG  268 (330)
T ss_pred             ----------------------EEEEEEecCCCcCCCCccceeEEE-CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence                                  001111000    00111345777 999999998854 68999999965432222222


Q ss_pred             C---CceeeEEEecCCCCeEEEeec-CCcEEEecCC
Q 012712          384 D---RHVVNCIEPHPHSTVLASSGI-ESDIKILTPN  415 (458)
Q Consensus       384 ~---~~~v~~~~~s~~~~~l~s~~~-d~~i~iw~~~  415 (458)
                      +   ......++++|||++|++++. +++|.+|+++
T Consensus       269 ~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        269 HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            2   124568999999999998775 8999999874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=1.4e-20  Score=146.01  Aligned_cols=280  Identities=16%  Similarity=0.177  Sum_probs=188.8

Q ss_pred             eEeecCCCceEEEEEec-CCCEEEEecCC-------CeEEEEECCCc---------ceeeeeccCCCcceeEEEEccCCC
Q 012712           55 AKLDKHRGCVNTVSFNT-DGDILISGSDD-------RRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTD  117 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d-------~~i~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~  117 (458)
                      +.|..|.+.|..++-+| +.+.|+|+..+       -.+.||.+...         +++..+...+-+.|.|+.|.|  +
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P--n  134 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP--N  134 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC--C
Confidence            35677899999999999 45677776542       25789988643         233344345667999999999  9


Q ss_pred             CeEEEEEcCCCcEEEeeccccccee-e---eeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeec
Q 012712          118 DRSIVTCAADGQVRHAQILERGGVE-T---KLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCR  192 (458)
Q Consensus       118 ~~~l~s~~~dg~i~vw~~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  192 (458)
                      +..+++-. |..|.+|++.....+. .   ..-.++....++-+|+|.. .+.++ ...|+++..||+++.+....+.-.
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhh
Confidence            99998877 7899999998776521 1   1122356678888999932 24444 455799999999988776555422


Q ss_pred             ccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC
Q 012712          193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ  272 (458)
Q Consensus       193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (458)
                               |...+..+.|+|+...+|++|+.||.|++||.|..+              .+.....+|...+.++.|+|.
T Consensus       213 ---------Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------------~pv~el~~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  213 ---------HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------------FPVQELPGHSHWVWAVRFNPE  269 (370)
T ss_pred             ---------hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------------ccccccCCCceEEEEEEecCc
Confidence                     444689999999877889999999999999999876              234556678899999999997


Q ss_pred             C-cEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712          273 S-ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF  350 (458)
Q Consensus       273 ~-~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  350 (458)
                      - ++|.+++.+ .+.+|..........+.............         ......+-....+.++..|+..  |.+++|
T Consensus       270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d---------seer~kpL~dg~l~tydehEDS--VY~~aW  338 (370)
T KOG1007|consen  270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED---------SEERVKPLQDGQLETYDEHEDS--VYALAW  338 (370)
T ss_pred             cceEEEecCCCceeEEEeccccccccccccccccccCcchh---------hHHhcccccccccccccccccc--eEEEee
Confidence            4 566676655 78888876543222211100000000000         0000000112345677888885  999999


Q ss_pred             ecCCCcEEEEecCCCeEEEEEe
Q 012712          351 FGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       351 ~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                      .+.|-=.+|+-+.||++.|=.+
T Consensus       339 SsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  339 SSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ccCCCeeEEEeccCceEEeecC
Confidence            4444446678899999988655

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=2.5e-20  Score=144.75  Aligned_cols=209  Identities=23%  Similarity=0.282  Sum_probs=163.1

Q ss_pred             cCCCceEEEEEecCC-----CEEEEecCCCeEEEEECCCcceee---ee-----ccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           59 KHRGCVNTVSFNTDG-----DILISGSDDRRVILWDWKTERVKL---SF-----HSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~-----~~l~s~~~d~~i~iwd~~~~~~~~---~~-----~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      .|.-+++.+.|.|+.     ++|||++.  .+++|.+...+...   ..     ...+.+++++..|... +.++|.+++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence            588899999999976     46776553  69999987422111   11     1346678999999874 778999999


Q ss_pred             CCCcEEEeecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          126 ADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      -|-+..|||++++..  +.+ .+-.|..+|..++|...+..+|++.+.||.+++||++..+-...+...+.       ..
T Consensus       171 iDTTCTiWdie~~~~~~vkT-QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-------~~  242 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKT-QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-------PS  242 (364)
T ss_pred             ccCeEEEEEEeeccccceee-EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-------CC
Confidence            999999999998733  333 36789999999999998888999999999999999998776555443221       23


Q ss_pred             cceEEEEECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecC
Q 012712          204 VNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYND  281 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~  281 (458)
                      .+...++|++++.+++|+-..| ..|.+.|+|...              .+......|.+.|+.++|.|.. ..|++++|
T Consensus       243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------------tpva~L~~H~a~VNgIaWaPhS~~hictaGD  308 (364)
T KOG0290|consen  243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------------TPVARLRNHQASVNGIAWAPHSSSHICTAGD  308 (364)
T ss_pred             CcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------------cceehhhcCcccccceEecCCCCceeeecCC
Confidence            4688999999989999887655 469999999764              2345667799999999999975 57888887


Q ss_pred             C-cEEEEEccCC
Q 012712          282 E-FIYLFTQDMG  292 (458)
Q Consensus       282 ~-~i~i~~~~~~  292 (458)
                      + .+.+||+...
T Consensus       309 D~qaliWDl~q~  320 (364)
T KOG0290|consen  309 DCQALIWDLQQM  320 (364)
T ss_pred             cceEEEEecccc
Confidence            7 6999999874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=2.6e-20  Score=146.86  Aligned_cols=285  Identities=13%  Similarity=0.124  Sum_probs=197.8

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeec-CCCceEEEEEe-------cCCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFN-------TDGD   74 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s-------~~~~   74 (458)
                      ..-++|||.-+++-+.|..+++|++...-.-+         ..+.....+..-.++- -.+.|...+|-       |+..
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~---------~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~  124 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK---------KADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN  124 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhccc---------CCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence            45589999999999999999999987321111         1112222222222221 23567777775       5678


Q ss_pred             EEEEecCCCeEEEEECCCcceeeeec-cCCCc---ceeEEEEccCCCCeEEEEEcCCCcEEEeecc-cccceeeeecc--
Q 012712           75 ILISGSDDRRVILWDWKTERVKLSFH-SGHND---NVFQAKIMPFTDDRSIVTCAADGQVRHAQIL-ERGGVETKLLG--  147 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~---~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~--  147 (458)
                      ++|+.+.+.-|++||.-+|+....+. -.|..   ...+++|+|  ||..|+.|- ...|+++|+. .+.........  
T Consensus       125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeecc-cceEEEeeccCCCCCCcchhhhhc
Confidence            99999999999999999999876662 12333   346899999  999998775 5789999994 44332222122  


Q ss_pred             ---ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-
Q 012712          148 ---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-  223 (458)
Q Consensus       148 ---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-  223 (458)
                         +..+.+.+++|+|-....++.++....+-|+.-..+.+...+..          +.+.|+.+.|.++ ++.|++|. 
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----------h~gGvThL~~~ed-Gn~lfsGaR  270 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----------HGGGVTHLQWCED-GNKLFSGAR  270 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----------cCCCeeeEEeccC-cCeeccccc
Confidence               23677899999999877899999999999998888877766653          5668999999998 56777776 


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc-ceeEE--EeCCCCcEEEEec-CCcEEEEEccCCCCCCCCC
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGL--AFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~  299 (458)
                      .+-.|..||+|..+..              .-.+..|.. .-..|  ...|++++|++|+ +|.|++||++..       
T Consensus       271 k~dkIl~WDiR~~~~p--------------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~-------  329 (406)
T KOG2919|consen  271 KDDKILCWDIRYSRDP--------------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL-------  329 (406)
T ss_pred             CCCeEEEEeehhccch--------------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-------
Confidence            5778999999976421              111111222 22333  4468899999996 778999999873       


Q ss_pred             CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                                                    +..+..+..+..  .++.+++ .|--.++|+++..
T Consensus       330 ------------------------------gn~~sv~~~~sd--~vNgvsl-nP~mpilatssGq  361 (406)
T KOG2919|consen  330 ------------------------------GNEVSVTGNYSD--TVNGVSL-NPIMPILATSSGQ  361 (406)
T ss_pred             ------------------------------CCcccccccccc--cccceec-CcccceeeeccCc
Confidence                                          122334444444  4788888 8888888877643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=152.99  Aligned_cols=293  Identities=13%  Similarity=0.085  Sum_probs=210.0

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc------cceeeeeccccccceEEEEEcCCCCeEEEEecCCCe
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL  174 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  174 (458)
                      .+|.+.|+++.|+.  ++++|++|+.|..+++|++...      +++... -..|...|.|++|...+ ..+++|+.+++
T Consensus        53 ~~H~GCiNAlqFS~--N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~~N-~~~~SG~~~~~  128 (609)
T KOG4227|consen   53 REHTGCINALQFSH--NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDLEN-RFLYSGERWGT  128 (609)
T ss_pred             hhhccccceeeecc--CCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEccCC-eeEecCCCcce
Confidence            58999999999999  9999999999999999998642      222221 22456899999999877 78999999999


Q ss_pred             EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      |...|+++.+.+..+....        ..+.|+.+..+|. .+.|++.+.++.|.+||.+....        +...+++ 
T Consensus       129 VI~HDiEt~qsi~V~~~~~--------~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~--------~~~~~~~-  190 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENN--------NRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQN--------PISLVLP-  190 (609)
T ss_pred             eEeeecccceeeeeecccC--------cccceeecccCCC-CceEEEEecCceEEEEeccCCCC--------CCceeee-
Confidence            9999999998777665221        3347999999998 68999999999999999987642        1111122 


Q ss_pred             ccccccccceeEEEeCCCC-cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          255 NLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       255 ~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                         .........+.|+|.. .+|++.+ .+.+-+||.+......-..                               ..
T Consensus       191 ---AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~-------------------------------~~  236 (609)
T KOG4227|consen  191 ---ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR-------------------------------SM  236 (609)
T ss_pred             ---cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh-------------------------------hc
Confidence               2234457788899976 4556655 5579999988642211000                               00


Q ss_pred             ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE-EEEeecCC-------ceeeEEEecCCCCeEEEee
Q 012712          333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL-IRVIEADR-------HVVNCIEPHPHSTVLASSG  404 (458)
Q Consensus       333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~-------~~v~~~~~s~~~~~l~s~~  404 (458)
                      ...+....  ..-.++.| +|+|+.+.+--....-.+||+.+..+ +..+. |.       ..+.+++|..|.. +++|+
T Consensus       237 ~~~L~~~~--~~~M~~~~-~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGS  311 (609)
T KOG4227|consen  237 FKGLPQEN--TEWMGSLW-SPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGS  311 (609)
T ss_pred             cccCcccc--hhhhheee-CCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccC
Confidence            01111101  01355667 99999888876666667888866433 22222 22       2477888876654 89999


Q ss_pred             cCCcEEEecCCc------------------------ccccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          405 IESDIKILTPNA------------------------ADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       405 ~d~~i~iw~~~~------------------------~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      .+-.|++|.+..                        ++...+.+|..-+..+.|+|...+|++.+..+.++||-
T Consensus       312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence            999999998752                        12234567777789999999999999999999999994

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.88  E-value=2.6e-20  Score=165.39  Aligned_cols=286  Identities=13%  Similarity=0.116  Sum_probs=202.1

Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee----eeeccccccceEEEEE
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE----TKLLGKHQGRAHKLAI  158 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~v~~~~~  158 (458)
                      +.+.||+++........ -.....|.+++|+|+ +..+++.|..+|+|.+||++.+....    ......|..++..+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEE-EecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999877332222 245788999999996 78889999999999999998876621    1223468889999999


Q ss_pred             cCCCC-eEEEEecCCCeEEEEeCCCCCccceeeecccCC--CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          159 EPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       159 ~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      ..+.. .-|++++.||.|..|+++.-.............  .........+++++|.|.+.+.|++|+.+|.|.--+...
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            76531 348899999999999887654422221111111  001113446899999999899999999999988744433


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      .+...       ...+.+......|.++|..+.++|=+. ++.+++|.+++||.....                      
T Consensus       380 ~~~~~-------~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~----------------------  430 (555)
T KOG1587|consen  380 YTPAP-------EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI----------------------  430 (555)
T ss_pred             Ccccc-------cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----------------------
Confidence            32111       011223334556789999999999764 555666779999987631                      


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEecC--CeEEEEeecCCceeeEE
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKG--GELIRVIEADRHVVNCI  391 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~  391 (458)
                                     ..++..+..+..  .+++++| ||-. ..++++..||.|.+||+..  ..++.+...+....+.+
T Consensus       431 ---------------~~Pl~~~~~~~~--~v~~vaW-SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~  492 (555)
T KOG1587|consen  431 ---------------ASPLLSLDSSPD--YVTDVAW-SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV  492 (555)
T ss_pred             ---------------CCcchhhhhccc--eeeeeEE-cCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence                           223334444444  3899999 9876 4667888899999999864  34555555556677888


Q ss_pred             EecCCCCeEEEeecCCcEEEecCCcc
Q 012712          392 EPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       392 ~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      .|++.|+.|+.|+..|++.+|++...
T Consensus       493 ~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  493 RWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ecCCCCcEEEEecCCCcEEEEEcCch
Confidence            99999999999999999999999643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.7e-20  Score=170.06  Aligned_cols=297  Identities=21%  Similarity=0.274  Sum_probs=209.1

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC--CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      ..+-..+.|+|-...++++...-.|+|||.+.++....|..+  ....|+.+++....|..++++|+.||.|+||+--..
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            345667888998888999987789999999999887766322  345788998876556788999999999999975333


Q ss_pred             c-ceee--e---ecc----ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          139 G-GVET--K---LLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       139 ~-~~~~--~---~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      . ....  .   .+.    +..+.-.-+.|.....+ |++++.-..|+|||.........+...         ....+++
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~---------s~t~vTa 1213 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYG---------SSTLVTA 1213 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccC---------CCcccee
Confidence            2 1110  0   011    11111134567766644 555555789999999987776665432         3345777


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc--eeEEEeCCCCcE-EEEec-CCcE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG--ITGLAFSDQSEL-LVSYN-DEFI  284 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~-~~~i  284 (458)
                      +.-+..+++++++|..||.|++||.|.....            +.......|...  |..+.+.++|-- |++++ +|.|
T Consensus      1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPD------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred             ecccccCCceEEEeecCCceEEeecccCCcc------------ccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence            7776666899999999999999999875422            223344455555  999999987643 77776 7789


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce-eeeeEEEEecCCCcEEEEecC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~l~~~~~  363 (458)
                      ++||++.....                                    .......|... ...+++.. +++...+|+|+.
T Consensus      1282 ~~~DlR~~~~e------------------------------------~~~~iv~~~~yGs~lTal~V-H~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1282 QLLDLRMSSKE------------------------------------TFLTIVAHWEYGSALTALTV-HEHAPIIASGSA 1324 (1387)
T ss_pred             EEEecccCccc------------------------------------ccceeeeccccCccceeeee-ccCCCeeeecCc
Confidence            99999874111                                    11111122211 13677777 899999999998


Q ss_pred             CCeEEEEEecCCeEEEEeecC-------CceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          364 CGRIFIWKKKGGELIRVIEAD-------RHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                       +.|.||++ .|+.+..++.+       .+.+.+++|+|..-+||+|+.|.+|.||......
T Consensus      1325 -q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 -QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             -ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence             99999998 56666555432       2467999999999999999999999999877554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=9e-20  Score=138.09  Aligned_cols=283  Identities=12%  Similarity=0.198  Sum_probs=196.4

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCC---------cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKT---------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      ..|.+-+++|.+++|+.|..+|.|.+..+.+         ++.......+|.++|+.++|.    ..+|++|+. |.|+-
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~gd-G~V~g   85 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGGD-GLVYG   85 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeeccC-ceEEE
Confidence            4566778999999999999999999998753         222222227899999999996    356777764 99999


Q ss_pred             eecccccc------eeeeeccccc-----cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcce
Q 012712          133 AQILERGG------VETKLLGKHQ-----GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM  201 (458)
Q Consensus       133 w~~~~~~~------~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  201 (458)
                      |..+....      ......+.|.     ..|+++...|..+. ++.++.|+.++-||+++|+....++.          
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rG----------  154 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRG----------  154 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcC----------
Confidence            98865433      1111122232     46899999998855 45555899999999999998887764          


Q ss_pred             eecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712          202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND  281 (458)
Q Consensus       202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (458)
                      |...+.++.--.. ...+++|++||++|+||.++.+....+.                                      
T Consensus       155 HtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie--------------------------------------  195 (325)
T KOG0649|consen  155 HTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIE--------------------------------------  195 (325)
T ss_pred             Ccceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEec--------------------------------------
Confidence            4557888887444 3578899999999999999876322100                                      


Q ss_pred             CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712          282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG  361 (458)
Q Consensus       282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~  361 (458)
                          .|                                           +....++.|.+. .|.+++-   +..+|++|
T Consensus       196 ----~y-------------------------------------------k~~~~lRp~~g~-wigala~---~edWlvCG  224 (325)
T KOG0649|consen  196 ----PY-------------------------------------------KNPNLLRPDWGK-WIGALAV---NEDWLVCG  224 (325)
T ss_pred             ----cc-------------------------------------------cChhhcCcccCc-eeEEEec---cCceEEec
Confidence                00                                           011122223332 4666654   56688887


Q ss_pred             cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCC-cE
Q 012712          362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADY-WW  440 (458)
Q Consensus       362 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~-~~  440 (458)
                      + ...+.+|.+.+.++..++.- .+.+..+.|-  .+.+++++..+.+.-|.+..-.....+......++..|+-.- ++
T Consensus       225 g-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~  300 (325)
T KOG0649|consen  225 G-GPKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKF  300 (325)
T ss_pred             C-CCceeEEeccCCCceEEEec-ccceeEeeee--cceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEE
Confidence            6 45789999998888777652 3456777773  456777888889999988776555555555556666665544 66


Q ss_pred             EEeeecCCceEEEE
Q 012712          441 SKSQNFSCSILLFE  454 (458)
Q Consensus       441 l~s~~~d~~i~~w~  454 (458)
                      +-.++..+.+.|+.
T Consensus       301 ~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  301 ISIAGFSNKLHILK  314 (325)
T ss_pred             EEecccceeeeeee
Confidence            76678888887764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-19  Score=137.38  Aligned_cols=246  Identities=15%  Similarity=0.155  Sum_probs=170.3

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR   84 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   84 (458)
                      +.+|.+++|++|..+|.|.+..++.-  .        .++....-+. .+-..++|.++|..++|.  ..+|++|+. |.
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl--~--------s~sa~~~gk~-~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~   82 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSL--D--------SGSAEPPGKL-KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GL   82 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhh--h--------ccccCCCCCc-ceeeccccCCCeeeeeee--hhheeeccC-ce
Confidence            46899999999999999999998731  1        1111111111 223458999999999998  446777764 99


Q ss_pred             EEEEECCCccee------eee-ccCCC-----cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           85 VILWDWKTERVK------LSF-HSGHN-----DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        85 i~iwd~~~~~~~------~~~-~~~~~-----~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      |+=|........      .+. ..-|.     ..|+++-..|  ..+-+++++.|+.+.-||+++++....  +.+|++.
T Consensus        83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP--~enSi~~AgGD~~~y~~dlE~G~i~r~--~rGHtDY  158 (325)
T KOG0649|consen   83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP--SENSILFAGGDGVIYQVDLEDGRIQRE--YRGHTDY  158 (325)
T ss_pred             EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc--CCCcEEEecCCeEEEEEEecCCEEEEE--EcCCcce
Confidence            999987654321      111 01122     3688999998  666777777999999999999886655  9999999


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      +.++.--... ..+++|++||++++||.++++.++.+...+............|.+++-+.   .++++|+ ...+.+|.
T Consensus       159 vH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwh  233 (325)
T KOG0649|consen  159 VHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWH  233 (325)
T ss_pred             eeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEe
Confidence            9999985444 35899999999999999999998888765443322211333567777765   3777665 45799999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM  291 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~  291 (458)
                      ++..+....+                .-..++..+.|..+  .+++++ .+.+.-|.+..
T Consensus       234 Lrsse~t~vf----------------pipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  234 LRSSESTCVF----------------PIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ccCCCceEEE----------------ecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence            9987633221                12346667777554  455555 44788887754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.87  E-value=2.2e-19  Score=155.42  Aligned_cols=330  Identities=15%  Similarity=0.127  Sum_probs=198.8

Q ss_pred             EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC
Q 012712           13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT   92 (458)
Q Consensus        13 l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~   92 (458)
                      +++-..++.|.|.|..+.+.+.                     ++......-..+.|+|||+++++++.|+.|.++|+.+
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~---------------------~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~   67 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVA---------------------RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT   67 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEE---------------------EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS
T ss_pred             EEEecCCCEEEEEECCCCeEEE---------------------EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc
Confidence            4566678999999999887764                     3655444445578999999999999999999999999


Q ss_pred             cceeeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeecccccceeeeeccc-----cccceEEEEEcCCCCeEE
Q 012712           93 ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHVF  166 (458)
Q Consensus        93 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l  166 (458)
                      ++.+.++..  .....++++++  ||++++++. .++.+.++|.++.+.+......+     ....+..+..+|..+.++
T Consensus        68 ~~~v~~i~~--G~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV  143 (369)
T PF02239_consen   68 GKVVATIKV--GGNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV  143 (369)
T ss_dssp             SSEEEEEE---SSEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred             ccEEEEEec--CCCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence            999888843  34578899999  999998776 58999999999888766533222     234677888888885555


Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCC
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ  246 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  246 (458)
                      ++.-+.+.|.+.|....+....-...         .........|+|++..++++...+..|-++|..+.+.......+.
T Consensus       144 v~lkd~~~I~vVdy~d~~~~~~~~i~---------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~  214 (369)
T PF02239_consen  144 VNLKDTGEIWVVDYSDPKNLKVTTIK---------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK  214 (369)
T ss_dssp             EEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS
T ss_pred             EEEccCCeEEEEEeccccccceeeec---------ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc
Confidence            55555688988898776543322111         122457789999843344555677799999998876543322111


Q ss_pred             CCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                                 ..|..+...+--...|...++...+.  +-.........                              
T Consensus       215 -----------~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v------------------------------  253 (369)
T PF02239_consen  215 -----------KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV------------------------------  253 (369)
T ss_dssp             -----------SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-------------------------------
T ss_pred             -----------cccccccccccCCCcceEEeeccccceecccccCCcccc------------------------------
Confidence                       12333333332111223333333221  22222221100                              


Q ss_pred             CCcccccCceeecCccceeeeeEEEEecCCCcEEEEe----cCCCeEEEEEecCCeEEEEeecCC-ceeeEEEecCCCCe
Q 012712          325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG----SDCGRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTV  399 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~  399 (458)
                      .+....+.++.+.....+   .-+.. +|+++++.+.    ...++|.++|.++.+.+.++.... ..+..+.|++||+.
T Consensus       254 ~d~~~wkvv~~I~~~G~g---lFi~t-hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  254 HDDYAWKVVKTIPTQGGG---LFIKT-HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             STTTBTSEEEEEE-SSSS-----EE---TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             chhhcCeEEEEEECCCCc---ceeec-CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence            000114455555554443   33444 9999999987    445899999999998888875332 35889999999997


Q ss_pred             EEEeec--CCcEEEecCCcccccc
Q 012712          400 LASSGI--ESDIKILTPNAADRAT  421 (458)
Q Consensus       400 l~s~~~--d~~i~iw~~~~~~~~~  421 (458)
                      +..+..  ++.|.+||..+.+...
T Consensus       330 v~vS~~~~~~~i~v~D~~Tl~~~~  353 (369)
T PF02239_consen  330 VWVSVWDGNGAIVVYDAKTLKEKK  353 (369)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEE
T ss_pred             EEEEEecCCCEEEEEECCCcEEEE
Confidence            655443  3479999999887653

...

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=9.2e-20  Score=141.65  Aligned_cols=291  Identities=14%  Similarity=0.164  Sum_probs=203.7

Q ss_pred             eeeeEeecCCCceEEEEEec---CCCEEEEecC----CCeEEEEEC--CCcceeeeeccCCCcceeEEEEccCCCC----
Q 012712           52 GIYAKLDKHRGCVNTVSFNT---DGDILISGSD----DRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDD----  118 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~----d~~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~----  118 (458)
                      +.+..+..+ -++.++.|+.   ...+||.|+.    ...|.|-.+  ++++.+..-...|.-+++.+.|.|  +.    
T Consensus        36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiP--d~~g~~  112 (364)
T KOG0290|consen   36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIP--DSKGVY  112 (364)
T ss_pred             ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecC--CccccC
Confidence            334444432 4678899984   2357888874    355666544  344544433347999999999999  54    


Q ss_pred             -eEEEEEcCCCcEEEeecccccc--eee-----eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc--cce
Q 012712          119 -RSIVTCAADGQVRHAQILERGG--VET-----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--TEL  188 (458)
Q Consensus       119 -~~l~s~~~dg~i~vw~~~~~~~--~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~  188 (458)
                       .+|||++  -.+|+|.+...+.  ...     ..-..+..++++..|+.-.++++.+++-|-+..+||++++..  +++
T Consensus       113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT  190 (364)
T KOG0290|consen  113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT  190 (364)
T ss_pred             cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence             4566665  3799999874321  111     112346679999999998889999999999999999999733  221


Q ss_pred             eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc-ccccceeEE
Q 012712          189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGL  267 (458)
Q Consensus       189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~  267 (458)
                      ....         |..+|..++|...+.+.|++.+.||.+|+||+|..+...             ..... ....+...+
T Consensus       191 QLIA---------HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-------------IIYE~p~~~~pLlRL  248 (364)
T KOG0290|consen  191 QLIA---------HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-------------IIYEDPSPSTPLLRL  248 (364)
T ss_pred             EEEe---------cCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-------------EEecCCCCCCcceee
Confidence            1111         667899999999777899999999999999999875211             01111 114577889


Q ss_pred             EeCCCC-cEEEEecCC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceee
Q 012712          268 AFSDQS-ELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT  344 (458)
Q Consensus       268 ~~~~~~-~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (458)
                      +|+++. +++|+-..+  .|.+.|++..                                     ..++..+.+|...  
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P-------------------------------------~tpva~L~~H~a~--  289 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVP-------------------------------------CTPVARLRNHQAS--  289 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCC-------------------------------------CcceehhhcCccc--
Confidence            999865 577776644  6999999864                                     4567788999985  


Q ss_pred             eeEEEEecCC-CcEEEEecCCCeEEEEEecCCeE------EEEeecCCceeeEEEecCC-CCeEEEeecCCcEEE
Q 012712          345 VKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGEL------IRVIEADRHVVNCIEPHPH-STVLASSGIESDIKI  411 (458)
Q Consensus       345 i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i  411 (458)
                      |++++| .|. ...|+++++|..+.+||+.+.-.      +..+. ..+.|+.++|++. ...++.+. ++++.|
T Consensus       290 VNgIaW-aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  290 VNGIAW-APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             ccceEe-cCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            999999 665 56899999999999999965321      22222 4567999999964 55777665 455544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=9.6e-21  Score=153.17  Aligned_cols=210  Identities=21%  Similarity=0.265  Sum_probs=161.2

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-----eeeeccccccceEEEEEcCCCCeEEEEecCCCeE
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-----ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV  175 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  175 (458)
                      .+|+++|..+.|+|+ +...||+|+.|.+|.||++..+...     ....+.+|...|--++|+|...+.|++++.|..|
T Consensus        78 ~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             cCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            689999999999997 6789999999999999999776432     2345889999999999999998999999999999


Q ss_pred             EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712          176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN  255 (458)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  255 (458)
                      .+||+.+++..-.+.           |...|.+++|+-+ |.++++.+.|..|+|||.++++....              
T Consensus       157 ~iWnv~tgeali~l~-----------hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e--------------  210 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-----------HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSE--------------  210 (472)
T ss_pred             EEEeccCCceeeecC-----------CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeee--------------
Confidence            999999998776655           5557999999998 78999999999999999999875432              


Q ss_pred             cccccccceeEEEeCCCCcEEEEec----CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712          256 LIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI  331 (458)
Q Consensus       256 ~~~~~~~~i~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (458)
                      -..+....-..+.|..+|.++.+|-    +..+-+||..+-...                                   .
T Consensus       211 ~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-----------------------------------~  255 (472)
T KOG0303|consen  211 GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-----------------------------------I  255 (472)
T ss_pred             cccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-----------------------------------c
Confidence            1122233456677888998666654    236999997763211                                   1


Q ss_pred             CceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCCe
Q 012712          332 APQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGE  376 (458)
Q Consensus       332 ~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~  376 (458)
                      ....+....+   |. +-|+++|.+.++ +|-.|+.||-|.+....
T Consensus       256 ~~~elDtSnG---vl-~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  256 ALQELDTSNG---VL-LPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeEEeccCCc---eE-EeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            1223333322   33 334599988776 56679999999996654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.86  E-value=1.1e-19  Score=153.01  Aligned_cols=268  Identities=10%  Similarity=0.130  Sum_probs=188.3

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC------CCCeEEEEecCCCeE
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP------GSPHVFYTCGEDGLV  175 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~s~~~dg~i  175 (458)
                      .|...+.++.|+.  ....+.+++.+..+.-|++.+... ....+. .+.-.+.+..-+      .+...|+.++.||.+
T Consensus        12 r~~e~vc~v~w~~--~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p-~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS--NEEIYFVSDDHQIFKWSDVSRDSV-EVAKLP-DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             ccceeEEeecccc--cceEEEeccCceEEEeecccchhh-hhhhCC-cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence            5677778999986  555555555444444445543322 211111 001111111111      123468888999999


Q ss_pred             EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712          176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN  255 (458)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  255 (458)
                      .+.+- .++.......          |.+.+.+-.|+|+ |.-|+++++||.|++|.-...-                ..
T Consensus        88 ~il~k-~~rVE~sv~A----------H~~A~~~gRW~~d-GtgLlt~GEDG~iKiWSrsGML----------------RS  139 (737)
T KOG1524|consen   88 VILNK-SARVERSISA----------HAAAISSGRWSPD-GAGLLTAGEDGVIKIWSRSGML----------------RS  139 (737)
T ss_pred             EEecc-cchhhhhhhh----------hhhhhhhcccCCC-CceeeeecCCceEEEEeccchH----------------HH
Confidence            88863 3444333332          6668899999998 7899999999999999864321                22


Q ss_pred             cccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee
Q 012712          256 LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV  335 (458)
Q Consensus       256 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (458)
                      .......+|.|++|.|+..-++.+..+.+.+=.+..                                      ...+-.
T Consensus       140 tl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~--------------------------------------n~k~i~  181 (737)
T KOG1524|consen  140 TVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA--------------------------------------NSKIIR  181 (737)
T ss_pred             HHhhcCceeEEEEECCCCCceEEecCCeEEEeeccc--------------------------------------ccceeE
Confidence            333456789999999999988888888777766554                                      234556


Q ss_pred             ecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       336 ~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      .+.|.+-  |.++.| ++..+++++|++|-..++||. .|..+..-..|..+|++++|.|+ +.++.++. +++|+    
T Consensus       182 WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~----  251 (737)
T KOG1524|consen  182 WRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF----  251 (737)
T ss_pred             EeccCcE--EEEeec-CccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-eeeee----
Confidence            7788885  899999 999999999999999999997 67888888889999999999999 66666664 45552    


Q ss_pred             cccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          416 AADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                            .....+.|..++|||||..++.|...|.+.+=..
T Consensus       252 ------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  252 ------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             ------cCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence                  1223567999999999999999999998765433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.86  E-value=1.8e-19  Score=165.94  Aligned_cols=354  Identities=14%  Similarity=0.101  Sum_probs=216.2

Q ss_pred             eeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcce-------eeeeccCCCcceeEEEEccCCCCeEEEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERV-------KLSFHSGHNDNVFQAKIMPFTDDRSIVT  123 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~l~s  123 (458)
                      .++..+..|...|..++.+++. .+++|||.||+|++|+...-..       ..++ ......+.++.+.+  .++.+|.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~--~~~~~Av 1115 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCG--NGDQFAV 1115 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEecc--CCCeEEE
Confidence            4556788999999999988765 9999999999999999864321       2222 23467889999999  9999999


Q ss_pred             EcCCCcEEEeecccccce-----eeeecc--ccccceEEEEEcCCCCe-EEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712          124 CAADGQVRHAQILERGGV-----ETKLLG--KHQGRAHKLAIEPGSPH-VFYTCGEDGLVQHFDLRTGAATELFTCRPID  195 (458)
Q Consensus       124 ~~~dg~i~vw~~~~~~~~-----~~~~~~--~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  195 (458)
                      ++.||.|++.++......     +.+...  .....+..-+|...... .++.+..-+.|..||++.......++...  
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-- 1193 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-- 1193 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc--
Confidence            999999999998762211     111111  22223334445443333 78888888999999999887776665433  


Q ss_pred             CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC---
Q 012712          196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---  272 (458)
Q Consensus       196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---  272 (458)
                            ..+.|++++.+|. +++++.|+..|.+.+||+|-+.....              ...++..+|+.+..+|-   
T Consensus      1194 ------~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~s--------------w~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1194 ------RHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILS--------------WEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred             ------cccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeec--------------ccCcccCCcceEEeeccCCC
Confidence                  3447999999997 78999999999999999997754322              12223456776666653   


Q ss_pred             CcEEEEecC---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEE
Q 012712          273 SELLVSYND---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN  349 (458)
Q Consensus       273 ~~~l~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  349 (458)
                      ....++++.   +.+.+|++.++.....+..+.....            +......+ . ...     .+.-  ......
T Consensus      1253 ~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~------------ls~~~Ps~-~-~~k-----p~~~--~~~~~~ 1311 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI------------LSYALPSN-D-ARK-----PDSL--AGISCG 1311 (1431)
T ss_pred             CceEEEecccCCCceeeeecccCcceEEEEcCCCCcc------------hhhhcccc-c-CCC-----CCcc--cceeee
Confidence            345555543   3699999998765444332200000            00000000 0 000     1111  112222


Q ss_pred             EecCCCcEEEEecCCCeEEEEEecCCeEEE-EeecCCceeeEEEecCCCCeEEEeecC--------------CcE-EEec
Q 012712          350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIR-VIEADRHVVNCIEPHPHSTVLASSGIE--------------SDI-KILT  413 (458)
Q Consensus       350 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d--------------~~i-~iw~  413 (458)
                      + ...+.++.+|+.|..|+.||....+... ...+..........+.+ ..++.++.-              ... ..=.
T Consensus      1312 ~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~ 1389 (1431)
T KOG1240|consen 1312 V-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQK 1389 (1431)
T ss_pred             c-ccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccc
Confidence            2 3345688899999999999986554331 12222212222222211 112222210              000 0111


Q ss_pred             CCcccccccccccccEEEEEEecCC-cEEEeeecCCceEEEE
Q 012712          414 PNAADRATLPTNIEQVCFSIYSADY-WWSKSQNFSCSILLFE  454 (458)
Q Consensus       414 ~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~  454 (458)
                      +..+.......|...|+++++-... .+|++++.||.|+||.
T Consensus      1390 ~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1390 LRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence            1122223445678889999876554 7889999999999994

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.86  E-value=6.6e-18  Score=135.91  Aligned_cols=290  Identities=13%  Similarity=0.192  Sum_probs=199.7

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC--CcEEEeecccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--GQVRHAQILER  138 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--g~i~vw~~~~~  138 (458)
                      ...+..+.|..+...|..|+.|| -++|..+..+..... ......|..+-|+.    .++|..+.+  ..+++.+.+..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcccC
Confidence            45677778999999999999998 688887765542222 22334566677754    566655544  45889998877


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      ..+....   ...+|.++.++.+   .|+++-.+ .|+|||+++.+.+..+...+.       +...+.++++++. +.+
T Consensus        79 ~~ICe~~---fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~-------n~~gl~AlS~n~~-n~y  143 (391)
T KOG2110|consen   79 TTICEIF---FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPP-------NPKGLCALSPNNA-NCY  143 (391)
T ss_pred             ceEEEEe---cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCC-------CccceEeeccCCC-Cce
Confidence            7666533   4468999999874   35555544 499999999998877754322       2224556666654 356


Q ss_pred             EEEe--cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-c-EEEEEccCCCC
Q 012712          219 FAVA--GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-F-IYLFTQDMGLG  294 (458)
Q Consensus       219 l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~-i~i~~~~~~~~  294 (458)
                      ++.-  ...|.|.+||+.+.+               +......|++.+.+++|+++|.+||++++. + |++|.+.++  
T Consensus       144 lAyp~s~t~GdV~l~d~~nl~---------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G--  206 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINLQ---------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG--  206 (391)
T ss_pred             EEecCCCCCceEEEEEcccce---------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--
Confidence            6643  246889999998865               345566899999999999999999999965 4 899999874  


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                          +....|+.......|.+++| +|++++|++.+..++|++|.++.
T Consensus       207 ------------------------------------~kl~eFRRG~~~~~IySL~F-s~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  207 ------------------------------------QKLYEFRRGTYPVSIYSLSF-SPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ------------------------------------cEeeeeeCCceeeEEEEEEE-CCCCCeEEEecCCCeEEEEEecc
Confidence                                                44555554444667999999 99999999999999999999853


Q ss_pred             CeE---------------------------E----------EEeecCCcee-eEEEec--CCCCeEEEeecCCcEEEecC
Q 012712          375 GEL---------------------------I----------RVIEADRHVV-NCIEPH--PHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       375 ~~~---------------------------~----------~~~~~~~~~v-~~~~~s--~~~~~l~s~~~d~~i~iw~~  414 (458)
                      ...                           +          .+.+...... ..+.+.  +..+++..++.||.+..|.+
T Consensus       250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l  329 (391)
T KOG2110|consen  250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL  329 (391)
T ss_pred             cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence            210                           0          0001011111 223333  46778888999999999987


Q ss_pred             Cc---ccccccccc
Q 012712          415 NA---ADRATLPTN  425 (458)
Q Consensus       415 ~~---~~~~~~~~~  425 (458)
                      ..   |++..+..|
T Consensus       330 ~~~~gGec~lik~h  343 (391)
T KOG2110|consen  330 PPKEGGECALIKRH  343 (391)
T ss_pred             CCCCCceeEEEEee
Confidence            53   455444433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.86  E-value=4.1e-21  Score=169.69  Aligned_cols=277  Identities=17%  Similarity=0.198  Sum_probs=211.0

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      .+|...|+|+.|..  .|.++++++.|..++||..++..+...  ..+|.+.|+.++.+.++ .++++++.|..|++|-+
T Consensus       187 lgH~naVyca~fDr--tg~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDR--TGRYIITGSDDRLVKIWSMETARCLAS--CRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             Hhhhhheeeeeecc--ccceEeecCccceeeeeeccchhhhcc--CCCCccccchhccchhh-hhhhhcccCceEEEEec
Confidence            58999999999999  999999999999999999988888766  89999999999999887 78899999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      ..+.++..+..          +.+.|++++|+|. .    +.+.||++++||.+-.-..           +.+.......
T Consensus       262 ~~~~pvsvLrg----------htgavtaiafsP~-~----sss~dgt~~~wd~r~~~~~-----------y~prp~~~~~  315 (1113)
T KOG0644|consen  262 PDGAPVSVLRG----------HTGAVTAIAFSPR-A----SSSDDGTCRIWDARLEPRI-----------YVPRPLKFTE  315 (1113)
T ss_pred             CCCchHHHHhc----------cccceeeeccCcc-c----cCCCCCceEeccccccccc-----------cCCCCCCccc
Confidence            99999888764          6678999999996 2    7789999999999821111           0111111122


Q ss_pred             ccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...+.++.|..++.-+++++++ .-..|.+...                                            ..+
T Consensus       316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l--------------------------------------------~~~  351 (1113)
T KOG0644|consen  316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQL--------------------------------------------AWR  351 (1113)
T ss_pred             ccceeeeeccccccccccccCCcccccchhhHh--------------------------------------------hhh
Confidence            3556777777778777777744 5555554321                                            111


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeE-EEeecCCcEEEecCCccc
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL-ASSGIESDIKILTPNAAD  418 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~iw~~~~~~  418 (458)
                      ...  +.-+.+.+--..+.+++-.+..+.+|++.+|.++..+.+|...+..|.++|-+..+ .+++.||...|||+..+.
T Consensus       352 ~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  352 SNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             ccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence            111  11111111122466777788899999999999999999999999999999977765 478999999999998875


Q ss_pred             ccc-cccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          419 RAT-LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       419 ~~~-~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ..+ .......+..-+||+||..++....-|.+.|.-
T Consensus       430 pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  430 PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             cceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence            442 223355677889999999888877778887764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.86  E-value=9.2e-18  Score=135.08  Aligned_cols=237  Identities=11%  Similarity=0.126  Sum_probs=175.8

Q ss_pred             CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCC
Q 012712          104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLR  181 (458)
Q Consensus       104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~  181 (458)
                      ...+..+.|..  +...|..|+.|| .++++.........  .......|-.+-|+.   .+++..+.+  +.+++++.+
T Consensus         5 ~~ti~~~~~Nq--d~~~lsvGs~~G-yk~~~~~~~~k~~~--~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K   76 (391)
T KOG2110|consen    5 KPTINFIGFNQ--DSTLLSVGSKDG-YKIFSCSPFEKCFS--KDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK   76 (391)
T ss_pred             Ccceeeeeecc--ceeEEEccCCCc-eeEEecCchHHhhc--ccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc
Confidence            34567777888  888888888887 47887765444211  122223455556665   344444443  458899988


Q ss_pred             CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712          182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ  261 (458)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (458)
                      .+..+..+.           ...+|.++.++.+   .|+++-++. |+|||+++.+++....            ....+.
T Consensus        77 k~~~ICe~~-----------fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~------------t~~~n~  129 (391)
T KOG2110|consen   77 KKTTICEIF-----------FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIE------------TTPPNP  129 (391)
T ss_pred             cCceEEEEe-----------cCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhh------------ccCCCc
Confidence            887766665           3447899999764   555555544 9999999998765532            222244


Q ss_pred             cceeEEEeCCCCcEEEEec---CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          262 VGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       262 ~~i~~~~~~~~~~~l~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                      ..+..+.+++.+.++|.-+   .|.|.+||..+                                      .+....+..
T Consensus       130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--------------------------------------l~~v~~I~a  171 (391)
T KOG2110|consen  130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--------------------------------------LQPVNTINA  171 (391)
T ss_pred             cceEeeccCCCCceEEecCCCCCceEEEEEccc--------------------------------------ceeeeEEEe
Confidence            5677777777788888654   45799999987                                      567778889


Q ss_pred             ccceeeeeEEEEecCCCcEEEEecCCCe-EEEEEecCCeEEEEeecCC--ceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          339 HRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEADR--HVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      |.+.  +-+++| +++|.+||++++.|+ ||++.+.+|+.+.+++-..  ..|.+++|+|++++|++.|..++|+|+.++
T Consensus       172 H~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  172 HKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             cCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            9986  899998 999999999999997 7899999999999997433  468999999999999999999999999876


Q ss_pred             c
Q 012712          416 A  416 (458)
Q Consensus       416 ~  416 (458)
                      .
T Consensus       249 ~  249 (391)
T KOG2110|consen  249 K  249 (391)
T ss_pred             c
Confidence            4

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.4e-19  Score=143.51  Aligned_cols=195  Identities=12%  Similarity=0.093  Sum_probs=142.4

Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL  286 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i  286 (458)
                      .+++|+++ +..+++++.||++|+|+..+...               ......|...|.++.|+|||++|++-+.+..++
T Consensus       148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t---------------~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~V  211 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLT---------------ILEEIAHHAEVKDLDFSPDGKFLASIGADSARV  211 (398)
T ss_pred             eEEEEcCC-CCEeeeccccceEEEEecCcchh---------------hhhhHhhcCccccceeCCCCcEEEEecCCceEE
Confidence            68999998 68999999999999999766542               223445788999999999999999999889999


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-----cEEEEe
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-----EYVVSG  361 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~l~~~  361 (458)
                      |+.+++.....                                      ............+.| +.|+     ...+..
T Consensus       212 W~~~~g~~~a~--------------------------------------~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~  252 (398)
T KOG0771|consen  212 WSVNTGAALAR--------------------------------------KTPFSKDEMFSSCRF-SVDNAQETLRLAASQ  252 (398)
T ss_pred             EEeccCchhhh--------------------------------------cCCcccchhhhhcee-cccCCCceEEEEEec
Confidence            99998632221                                      111111112344445 6665     233333


Q ss_pred             cCCCeEEEEEecCCeE-----EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccc--ccccccEEEEEE
Q 012712          362 SDCGRIFIWKKKGGEL-----IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL--PTNIEQVCFSIY  434 (458)
Q Consensus       362 ~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~v~~~~~  434 (458)
                      ..-+.|+.|++...+.     .+....-...|++++.++||+++|.|+.||.|-|++..+-++..+  ..|..-|+.+.|
T Consensus       253 ~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF  332 (398)
T KOG0771|consen  253 FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF  332 (398)
T ss_pred             CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE
Confidence            4446777777643322     111112234799999999999999999999999999998877754  456777999999


Q ss_pred             ecCCcEEEeeecCCceEEEEEe
Q 012712          435 SADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       435 s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +||.+++++-+.|....|...-
T Consensus       333 ~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  333 SPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cCCcCcccccccCCceeEEEEe
Confidence            9999999999999888876543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=6.5e-19  Score=159.98  Aligned_cols=296  Identities=14%  Similarity=0.165  Sum_probs=201.1

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeec---CCCceEEEEEec--CCCEEEE
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HRGCVNTVSFNT--DGDILIS   78 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~s~--~~~~l~s   78 (458)
                      +-++|-.+.++++.+...|+|||.+.++.+..                     |..   -...|+.+.+-.  |..+|++
T Consensus      1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~---------------------F~n~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNG---------------------FDNGAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred             eeecCCCceeEEcCCcceEEEEecccCceecc---------------------ccCCCCCCCccceeeeecccchhheee
Confidence            45778888999999888999999998887643                     222   245788888865  4468999


Q ss_pred             ecCCCeEEEEECC-Cc----ceeeee------ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc
Q 012712           79 GSDDRRVILWDWK-TE----RVKLSF------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG  147 (458)
Q Consensus        79 ~~~d~~i~iwd~~-~~----~~~~~~------~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  147 (458)
                      |+.||.|+||+-- +.    +.+..+      ..+..+.=.-+.|..  ...+|+++|.-..|+|||.......... ..
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~Ll~tGd~r~IRIWDa~~E~~~~di-P~ 1205 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGHLLVTGDVRSIRIWDAHKEQVVADI-PY 1205 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh--hCCeEEecCCeeEEEEEecccceeEeec-cc
Confidence            9999999999642 21    222111      111111113456766  5556666666789999999776555443 22


Q ss_pred             ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe
Q 012712          148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY  227 (458)
Q Consensus       148 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  227 (458)
                      +....++++.-+..+.+++++|..||.|++||.+..........     .+.|....+|..+.+.+.+-..+++|+.+|.
T Consensus      1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~-----~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV-----YREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred             CCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee-----ecccCCcccceeEEeecCCCcceeeeccCCe
Confidence            34556777776655558999999999999999987654322221     1233333348999999875456999999999


Q ss_pred             EEEEecCCCccCCCccCCCCCCCcCCCcccccc--ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712          228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      |++||+|.......            .....+-  .+..+++..++....+|+|+...|+||++.........       
T Consensus      1281 I~~~DlR~~~~e~~------------~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k------- 1341 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETF------------LTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK------- 1341 (1387)
T ss_pred             EEEEecccCccccc------------ceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc-------
Confidence            99999998521111            1111111  22589999999999999999988999998764321110       


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                                                ....|.+.... .+.+++| +|..-++|+|+.|.+|.||.....
T Consensus      1342 --------------------------~n~~F~~q~~g-s~scL~F-HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 --------------------------YNPGFMGQRIG-SVSCLAF-HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             --------------------------cCcccccCcCC-Ccceeee-cchhHhhhhccCCceEEEeecCCc
Confidence                                      11122222222 3688998 999999999999999999987554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.84  E-value=6.5e-18  Score=146.32  Aligned_cols=326  Identities=13%  Similarity=0.076  Sum_probs=191.0

Q ss_pred             EEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEE
Q 012712           77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL  156 (458)
Q Consensus        77 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~  156 (458)
                      ++-..++.|.+.|..+.+.+.++..+. ..-..+.|+|  |++++++++.||.|.++|+.+.+.+..  +. -......+
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~--i~-~G~~~~~i   83 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVAT--IK-VGGNPRGI   83 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEE--EE--SSEEEEE
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEE--Ee-cCCCcceE
Confidence            455668999999999999988884333 3334578999  999999999999999999999887665  33 22346789


Q ss_pred             EEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      +++++|+.++++....+.+.++|.++.+.++.+.........   ....+.++..+|....++++.-..+.|.+.|....
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            999999666666678899999999999988877643321110   22356778888875446666666688988887664


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      +..              ...............|+|++++++.+.  .+.+.++|..+.+....+...             
T Consensus       161 ~~~--------------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g-------------  213 (369)
T PF02239_consen  161 KNL--------------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG-------------  213 (369)
T ss_dssp             SCE--------------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S-------------
T ss_pred             ccc--------------ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc-------------
Confidence            311              111111234566789999999877654  457999998764321110000             


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEec
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH  394 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  394 (458)
                                 ..........+ .|.....+...   ...+...++.-....+.+||..+.+.++++.....+ ..+..+
T Consensus       214 -----------~~p~~~~~~~~-php~~g~vw~~---~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th  277 (369)
T PF02239_consen  214 -----------KKPHPGPGANF-PHPGFGPVWAT---SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH  277 (369)
T ss_dssp             -----------SSBEETTEEEE-EETTTEEEEEE---EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred             -----------ccccccccccc-cCCCcceEEee---ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence                       00000000001 12211112221   112222222222335567888899999999876666 788899


Q ss_pred             CCCCeEEEe----ecCCcEEEecCCcccccccccccc--cEEEEEEecCCcEEEeeecC--CceEEEE
Q 012712          395 PHSTVLASS----GIESDIKILTPNAADRATLPTNIE--QVCFSIYSADYWWSKSQNFS--CSILLFE  454 (458)
Q Consensus       395 ~~~~~l~s~----~~d~~i~iw~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~s~~~d--~~i~~w~  454 (458)
                      |+++++.+.    ...+.|.++|.++.+.........  ++..+.|++||+.+..+..+  +.|.+||
T Consensus       278 P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  278 PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            999999887    445899999999986553322222  49999999999755443333  3699987

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=5.1e-19  Score=158.80  Aligned_cols=237  Identities=12%  Similarity=0.145  Sum_probs=160.5

Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEE
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  158 (458)
                      +..|.+||.+.... ..+ ..|...+..++|+|  ||+.|+.++.+   ..|.+||+.+++......+.+|   ...++|
T Consensus       183 ~~~i~i~d~dg~~~-~~l-t~~~~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FIV-NRSSQPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF  255 (429)
T ss_pred             eEEEEEECCCCCCc-eEe-ccCCCccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence            57899999875553 443 56788899999999  99999987653   4699999987654333223333   346899


Q ss_pred             cCCCCeEEEEecCCCeEEEE--eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          159 EPGSPHVFYTCGEDGLVQHF--DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      +|++..++++.+.+|.+.+|  |+.+++... +..          +...+....|+||+..++++...+|...+|++...
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~----------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS----------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc----------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence            99995555555577765555  666554322 211          22246789999985444555556788888887543


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCC
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH  316 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (458)
                      ...              ..... +..  ....|+|+|+.|+..+.+.+.+||+.++..                      
T Consensus       325 ~~~--------------~~~l~-~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~----------------------  365 (429)
T PRK01742        325 GGG--------------ASLVG-GRG--YSAQISADGKTLVMINGDNVVKQDLTSGST----------------------  365 (429)
T ss_pred             CCC--------------eEEec-CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCe----------------------
Confidence            210              01111 122  357899999999888877788899876421                      


Q ss_pred             ccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec--CCeEEEEeecCCceeeEEEec
Q 012712          317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK--GGELIRVIEADRHVVNCIEPH  394 (458)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s  394 (458)
                                       ..+.....   ...+.| +|||++|+.++.++.+.+|++.  +|+.++.+..|.+.+...+|+
T Consensus       366 -----------------~~lt~~~~---~~~~~~-sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws  424 (429)
T PRK01742        366 -----------------EVLSSTFL---DESPSI-SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS  424 (429)
T ss_pred             -----------------EEecCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence                             11111111   234556 9999999999999988888763  688888898888889999999


Q ss_pred             CC
Q 012712          395 PH  396 (458)
Q Consensus       395 ~~  396 (458)
                      |-
T Consensus       425 p~  426 (429)
T PRK01742        425 PY  426 (429)
T ss_pred             CC
Confidence            84

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=5.2e-19  Score=143.27  Aligned_cols=206  Identities=17%  Similarity=0.216  Sum_probs=158.3

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-CEEEEec
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGS   80 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~   80 (458)
                      |..+.|-+...+|+|++|.+|.||++-.+.+...              -.+.+..|.||...|--++|+|.. +.|++++
T Consensus        86 Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   86 DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             ccccCccCCceeecCCCCceEEEEECCCcccccC--------------cccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            4555666677899999999999999986655432              125677899999999999999964 7899999


Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc-ceEEEEEc
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-RAHKLAIE  159 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~~  159 (458)
                      .|.+|.+|++.+++.+.++  .|..-|+++.|+.  ||.+|++.+.|..|+|||.++++.+..  -.+|.+ .-..+.|-
T Consensus       152 ~Dn~v~iWnv~tgeali~l--~hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e--~~~heG~k~~Raifl  225 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITL--DHPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSE--GVAHEGAKPARAIFL  225 (472)
T ss_pred             CCceEEEEeccCCceeeec--CCCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeee--cccccCCCcceeEEe
Confidence            9999999999999998887  4999999999999  999999999999999999999988766  355654 34456677


Q ss_pred             CCCCeEEEEec----CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          160 PGSPHVFYTCG----EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       160 ~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      .++ . +++.+    .+..+-+||....+..-.+....        ....|.---+.|+.+-+.++|-.|+.|+.|.+..
T Consensus       226 ~~g-~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--------tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  226 ASG-K-IFTTGFSRMSERQIALWDPNNLEEPIALQELD--------TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             ccC-c-eeeeccccccccceeccCcccccCcceeEEec--------cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            777 4 45444    35679999977655433222111        2334555567887544455666899999999987


Q ss_pred             Cc
Q 012712          236 YK  237 (458)
Q Consensus       236 ~~  237 (458)
                      ..
T Consensus       296 d~  297 (472)
T KOG0303|consen  296 EP  297 (472)
T ss_pred             CC
Confidence            54

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=2.6e-18  Score=152.82  Aligned_cols=285  Identities=13%  Similarity=0.061  Sum_probs=193.1

Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--ceeeecccCCCCcceeecc
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~  205 (458)
                      +.+.+|++........  .......|.++.|+|..+++++.|+.+|.|.+||++.+...  ..+..      ..+.+..+
T Consensus       222 ~~~~vW~~~~p~~Pe~--~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~------~~~sh~~~  293 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPEL--VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA------LEVSHSEP  293 (555)
T ss_pred             ceEEEEecCCCCCceE--EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc------ccccCCcC
Confidence            4789999988733332  23356789999999999999999999999999999987663  22221      23346778


Q ss_pred             eEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEec-CC
Q 012712          206 LNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DE  282 (458)
Q Consensus       206 v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~  282 (458)
                      +..+.|..+- +.-|++++.||.|..|+++............+.   ............++++.|.+.. ..++.|+ +|
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~---~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G  370 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK---KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG  370 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc---cccccccccccceeeEeeccCCCceEEEEcCCc
Confidence            8999997651 134889999999999988766542111111100   0001111234578899998854 3555666 45


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      .|+-=+-........                              ...+....+..|.++  |.++.+ +|=+..++..+
T Consensus       371 ~v~~~~r~g~~~~~~------------------------------~~~~~~~~~~~h~g~--v~~v~~-nPF~~k~fls~  417 (555)
T KOG1587|consen  371 KVYKGCRKGYTPAPE------------------------------VSYKGHSTFITHIGP--VYAVSR-NPFYPKNFLSV  417 (555)
T ss_pred             EEEEEeccCCccccc------------------------------ccccccccccccCcc--eEeeec-CCCccceeeee
Confidence            554422221110000                              001223345556664  888887 77665554444


Q ss_pred             CCCeEEEEEec-CCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCccccc---ccccccccEEEEEEecC
Q 012712          363 DCGRIFIWKKK-GGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADRA---TLPTNIEQVCFSIYSAD  437 (458)
Q Consensus       363 ~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~v~~~~~s~d  437 (458)
                      .|.+++||... ...++..+..+...+++++|||... .++++..||.|.|||+......   ....+....+.+.|+++
T Consensus       418 gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~  497 (555)
T KOG1587|consen  418 GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN  497 (555)
T ss_pred             ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCC
Confidence            49999999987 6777877887888899999999876 6778888999999999765433   22333455778889999


Q ss_pred             CcEEEeeecCCceEEEEEe
Q 012712          438 YWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       438 ~~~l~s~~~d~~i~~w~~~  456 (458)
                      |+.|+.|...|.+.+|+..
T Consensus       498 g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  498 GKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CcEEEEecCCCcEEEEEcC
Confidence            9999999999999999863

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=6.6e-18  Score=133.30  Aligned_cols=225  Identities=13%  Similarity=0.099  Sum_probs=166.2

Q ss_pred             eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      +.--.++|+|.+|++|+..+|.+-....|.||......   ..+++ ..|...|+.+.|+|  ..+.|++|+.|..-.+|
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap--~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAP--KSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecC--CCCceeEccCCCCcccc
Confidence            33345799999999999999999999999999977655   33444 78999999999999  99999999999999999


Q ss_pred             ec-ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          134 QI-LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      .. ..+...++..+..++..++++.|+|.+ +.|++|+....|.+|-++..+.=..-+..+      ......|.++.|+
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhik------kPirStv~sldWh  155 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIK------KPIRSTVTSLDWH  155 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhC------Cccccceeeeecc
Confidence            98 555556666678899999999999999 789999999999999887654321111000      0034468999999


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCccCCCc---cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712          213 PRNANLFAVAGSDEYTRLYDIRKYKWDGST---DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT  288 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~  288 (458)
                      |. +-++++|+.|+..++|..--.......   ..+.....-+.........+.+..+.|+|+|..|+-.+ +..+.+-|
T Consensus       156 pn-nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  156 PN-NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             CC-cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            97 689999999999999976433322211   11111111111111223467899999999999998766 55788887


Q ss_pred             ccCC
Q 012712          289 QDMG  292 (458)
Q Consensus       289 ~~~~  292 (458)
                      ....
T Consensus       235 a~~p  238 (361)
T KOG1523|consen  235 AAGP  238 (361)
T ss_pred             cCCC
Confidence            6654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=1.1e-18  Score=147.17  Aligned_cols=208  Identities=16%  Similarity=0.240  Sum_probs=157.9

Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccce
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA  153 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v  153 (458)
                      ..|+.++.||.+.|-+ +.++....+ ..|.+.+.+-.|+|  ||.-|+++++||.|++|.- ++-...  .+.....+|
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRS--tl~Q~~~~v  148 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRS--TVVQNEESI  148 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHH--HHhhcCcee
Confidence            5688889999999887 445554555 78999999999999  9999999999999999984 332222  245567789


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      .|++|.|+..+++++.+  +.+.+=.+.....+-..+.          |.+-|.++.|+|. .+++++|++|-..++||.
T Consensus       149 ~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkA----------HDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  149 RCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRA----------HDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             EEEEECCCCCceEEecC--CeEEEeecccccceeEEec----------cCcEEEEeecCcc-ccceeecCCceeEEeecc
Confidence            99999999977777665  4565555554443333332          6668999999998 689999999999999998


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccC
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG  313 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (458)
                      ....                ......|+.+|++++|+|+ +.++.++-+.+++=..+.                      
T Consensus       216 ~G~~----------------Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~----------------------  256 (737)
T KOG1524|consen  216 QGAN----------------LFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV----------------------  256 (737)
T ss_pred             cCcc----------------cccCChhccceeeeeeccc-cceeeeeeeeeeecCCCc----------------------
Confidence            6543                1223447889999999999 777777766666322221                      


Q ss_pred             CCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                                                 +  .|..++| |+||..+++|+..|.+.+=
T Consensus       257 ---------------------------G--SifnlsW-S~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  257 ---------------------------G--SIFNLSW-SADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ---------------------------c--ceEEEEE-cCCCceeeccccCceEEEe
Confidence                                       1  4899999 9999999999999876543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.9e-18  Score=144.22  Aligned_cols=172  Identities=20%  Similarity=0.293  Sum_probs=128.8

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEE
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHF  178 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw  178 (458)
                      +.+|++.|+++.|+.  +|.+|++|+.|-.+.|||....+.+.. .-.+|...|.++.|-|.. ..++++|..|..|+++
T Consensus        46 L~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllhs-I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLHS-ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hccccceecceeecC--CCCEEeecCCcceEEeecchhcceeee-eecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            379999999999999  999999999999999999986665553 367899999999999853 4688999999999999


Q ss_pred             eCCCCCc----------cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712          179 DLRTGAA----------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       179 d~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      |+...+.          ...+.+          +...|..++-.|.+++.+.++++||+|+-+|++....-..       
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~c----------ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p-------  185 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSC----------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP-------  185 (758)
T ss_pred             ecccccccccccCccchhhhhhh----------hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc-------
Confidence            9985321          112222          4457888999998889999999999999999997542111       


Q ss_pred             CCcCCCcccc--ccccceeEEEeCCCC-cEEEEecCC-cEEEEEccC
Q 012712          249 DYFCPPNLIG--DEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDM  291 (458)
Q Consensus       249 ~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~~-~i~i~~~~~  291 (458)
                      ..-++..+..  ..--...++..+|.. .+|+.|+.+ -.++||.+.
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence            0001111111  112356789999975 577777766 799999644

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=2e-17  Score=152.81  Aligned_cols=269  Identities=13%  Similarity=0.063  Sum_probs=170.5

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      +.+..++.+.+++||+.||+||+||...-..-.            +  ..+...++.--...+.++.+.+.++.+|.++.
T Consensus      1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------------~--s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------------G--SARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             ceeecCCCCceEEEecCCceEEEeeehhhhcCc------------c--eeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            445677888999999999999999987322110            1  12222333335678999999999999999999


Q ss_pred             CCeEEEEECCCcceee------eeccC-CCcceeEE-EEccCCCCe-EEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           82 DRRVILWDWKTERVKL------SFHSG-HNDNVFQA-KIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~------~~~~~-~~~~i~~~-~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      ||.|++.+++..+..+      ..... ..+.+.++ +|.. ..+. .|+.+...+.|..||++..............+.
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~-~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA-IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccc-cccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            9999999987621111      11111 22333333 3333 1334 778888889999999988877665445556688


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC--cEEEEe-c-CCCeE
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVA-G-SDEYT  228 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~-~-~dg~i  228 (458)
                      |++++.+|.+ +.++.|+..|.+.+||++-+.++.....+         ...++..+..+|-.+  ...+++ . ..+.|
T Consensus      1198 vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P---------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1198 VTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHP---------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred             eeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCc---------ccCCcceEEeeccCCCCceEEEecccCCCce
Confidence            9999999999 79999999999999999988877666533         334566666555422  344444 3 57889


Q ss_pred             EEEecCCCccCCCccCC--CC-CCCcCCCc--cccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712          229 RLYDIRKYKWDGSTDFG--QP-ADYFCPPN--LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP  295 (458)
Q Consensus       229 ~i~d~~~~~~~~~~~~~--~~-~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~  295 (458)
                      .+|++.++......-.+  .| .....+..  ........+.+..-.+++-.+.++++..|+.||.......
T Consensus      1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            99999987533221111  11 11111111  0011112233333334444444455779999998876544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.82  E-value=7.5e-18  Score=134.31  Aligned_cols=351  Identities=15%  Similarity=0.183  Sum_probs=210.9

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcce----eeeeccCC------------CcceeEEEEccCCCCeEEEEE
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGH------------NDNVFQAKIMPFTDDRSIVTC  124 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~------------~~~i~~~~~~~~~~~~~l~s~  124 (458)
                      .+-|.++.|...|.+||||..+|.|.++.-.....    .....+.|            ...|..+.|.+..+...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            46789999999999999999999999997543221    12222333            246889999985556677888


Q ss_pred             cCCCcEEEeeccccccee----------------------------------eeeccccccceEEEEEcCCCCeEEEEec
Q 012712          125 AADGQVRHAQILERGGVE----------------------------------TKLLGKHQGRAHKLAIEPGSPHVFYTCG  170 (458)
Q Consensus       125 ~~dg~i~vw~~~~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~  170 (458)
                      ..|.+|++|.+.......                                  ...-..|+.-|+++.++.|. ..+++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lS-A  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLS-A  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEee-c
Confidence            889999999986532211                                  01123588889999999998 44454 4


Q ss_pred             CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC--ccCCCCC
Q 012712          171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS--TDFGQPA  248 (458)
Q Consensus       171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~  248 (458)
                      .|=.|.+|+++-......+--.+...++.  -..-|++..|+|...++|+-.+..|+|++.|+|...+-..  -.+..|.
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEe--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            57889999987543322221111111111  2234788999998788999999999999999995432110  0011111


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCC-CCCCCccccccccccCCCCccccCCCCCCc
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP-PPSSPVSTRSEASEMGSDHTSAASPSTANT  327 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (458)
                      . ......+.+--..|..+.|+++|+++++-.--++++||++....+.. ++.+...                       
T Consensus       261 d-p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~l-----------------------  316 (433)
T KOG1354|consen  261 D-PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYL-----------------------  316 (433)
T ss_pred             C-CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhH-----------------------
Confidence            1 01122333344678899999999999998888999999976432211 1000000                       


Q ss_pred             ccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE-EEeecCCce--eeEEEecCCCCeEEEee
Q 012712          328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHV--VNCIEPHPHSTVLASSG  404 (458)
Q Consensus       328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~--v~~~~~s~~~~~l~s~~  404 (458)
                        ...+..+.....--.-..++| +.++.++++|+....+++|++..|... .++......  +..+   ..-+.+.+++
T Consensus       317 --r~kLc~lYEnD~IfdKFec~~-sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g  390 (433)
T KOG1354|consen  317 --RSKLCSLYENDAIFDKFECSW-SGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSG  390 (433)
T ss_pred             --HHHHHHHhhccchhheeEEEE-cCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCC
Confidence              000000111111111345677 889999999999999999997666433 233322221  1111   1123444455


Q ss_pred             cCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712          405 IESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       405 ~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      ......+|-       ........+...+|+|....+|.+..++ +++|
T Consensus       391 ~r~~~~~~v-------d~ldf~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  391 KRKRDEISV-------DALDFRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             Ccccccccc-------chhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            444422221       1111223466678999999888876653 4443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5.4e-19  Score=147.07  Aligned_cols=306  Identities=14%  Similarity=0.143  Sum_probs=218.6

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEE
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHF  178 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw  178 (458)
                      +..|.+.|..+.|..  .|..|++++.|..|.+||.......... ..+|...|....|-|.. ..-+++++.||.+++=
T Consensus       138 L~~H~GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~~l~f-~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSPKLSF-ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             ccCCCCccceeeecc--cCceeeccCccceEEeehhhccCccccc-ccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            478999999999999  9999999999999999999887766543 56898889888898853 3568999999999987


Q ss_pred             eCCCCCccc-eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          179 DLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       179 d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      .+.....+. .....+        +.++|.-++..|+.+.-|.+++.|+.+.-+|++.........        | ....
T Consensus       215 ~i~~t~~~e~t~rl~~--------h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--------c-r~~~  277 (559)
T KOG1334|consen  215 EILETGYVENTKRLAP--------HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--------C-READ  277 (559)
T ss_pred             eeccccceecceeccc--------ccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--------e-eccC
Confidence            764333322 222111        566889999999988999999999999999998875322211        0 0000


Q ss_pred             cccccceeEEEeCCCCc-EEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee
Q 012712          258 GDEQVGITGLAFSDQSE-LLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV  335 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~-~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (458)
                      ....-....++..|... .+++++.+ .+++||.+.-.....-                           .....-+...
T Consensus       278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---------------------------~~~~~f~p~h  330 (559)
T KOG1334|consen  278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---------------------------GVLDKFCPHH  330 (559)
T ss_pred             CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc---------------------------chhhhcCCcc
Confidence            00113567888888765 66666644 6899997653211100                           0000112222


Q ss_pred             ecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec--CC----------eEEE-EeecCCc--eeeEEEe-cCCCCe
Q 012712          336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK--GG----------ELIR-VIEADRH--VVNCIEP-HPHSTV  399 (458)
Q Consensus       336 ~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~----------~~~~-~~~~~~~--~v~~~~~-s~~~~~  399 (458)
                      +.. ..+..|++++| +.++.-|.+.-.|-.|+++.-.  .|          ..+. .+++|..  .|..+-| -|...+
T Consensus       331 l~~-d~~v~ITgl~Y-sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy  408 (559)
T KOG1334|consen  331 LVE-DDPVNITGLVY-SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY  408 (559)
T ss_pred             ccc-cCcccceeEEe-cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence            333 34456999999 8777666666678889999542  22          2222 3778864  4666654 588899


Q ss_pred             EEEeecCCcEEEecCCccccccccccc-ccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          400 LASSGIESDIKILTPNAADRATLPTNI-EQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       400 l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +++|++=|.|.||+-.+++.+.+.... .-|.++.-+|--..||+++-|..|+||-
T Consensus       409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             EEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence            999999999999999999988654433 3589999999999999999999999995

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4.6e-18  Score=144.55  Aligned_cols=329  Identities=17%  Similarity=0.201  Sum_probs=221.9

Q ss_pred             CcEEEEEccccccccccccc----cccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEECCCcc
Q 012712           20 ALVDVWLRELGQLSTRNFAL----RRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTER   94 (458)
Q Consensus        20 ~~i~iw~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~   94 (458)
                      ..|+||++..|+-++...+.    ......+...++++++.|. |...-+.|..+|||+|+ |||...-.|++||+.+-.
T Consensus         7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS   85 (703)
T KOG2321|consen    7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS   85 (703)
T ss_pred             CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence            45899999988777653331    2222223334456666665 78888999999999875 566778899999998655


Q ss_pred             eeeeeccCCCcce-eEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC
Q 012712           95 VKLSFHSGHNDNV-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG  173 (458)
Q Consensus        95 ~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  173 (458)
                      ....  ......+ .-.-.+.  |-..++.-..|.+|.+-..- +..... .++   ..-..++++.-... |++++...
T Consensus        86 LKFE--RhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~-G~hy~~-RIP---~~GRDm~y~~~scD-ly~~gsg~  155 (703)
T KOG2321|consen   86 LKFE--RHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKY-GRHYRT-RIP---KFGRDMKYHKPSCD-LYLVGSGS  155 (703)
T ss_pred             eeee--ecccccceeEEEecc--chhhheEeecCceeeehhhc-Ceeeee-ecC---cCCccccccCCCcc-EEEeecCc
Confidence            4332  2223333 3333343  55556666667777654321 111111 111   22345666654423 45555667


Q ss_pred             eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712          174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP  253 (458)
Q Consensus       174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  253 (458)
                      .|+-+++++|..+..+..          ....++++..++- ..+|++|+.+|.|..||.+.......+.....+..   
T Consensus       156 evYRlNLEqGrfL~P~~~----------~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s---  221 (703)
T KOG2321|consen  156 EVYRLNLEQGRFLNPFET----------DSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS---  221 (703)
T ss_pred             ceEEEEcccccccccccc----------ccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCC---
Confidence            799999999998887764          3457899999997 56999999999999999999877665444322111   


Q ss_pred             CccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                       .........|+++.|+.+|-.+++|+ .|.++|||+++..                                       
T Consensus       222 -~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~---------------------------------------  261 (703)
T KOG2321|consen  222 -HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK---------------------------------------  261 (703)
T ss_pred             -CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC---------------------------------------
Confidence             11112234599999999999999988 6789999999742                                       


Q ss_pred             ceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEE
Q 012712          333 PQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI  411 (458)
Q Consensus       333 ~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  411 (458)
                      ......|.....|..+.|...+ ++.+++. +...++|||-.+|+....+..- ..++.+++-|++.++.++-+++.+..
T Consensus       262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  262 PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             ceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCccee
Confidence            2334456666668888883333 3345444 4578999999999999888743 45999999999999999999888877


Q ss_pred             ecCC
Q 012712          412 LTPN  415 (458)
Q Consensus       412 w~~~  415 (458)
                      |=+.
T Consensus       340 yyiP  343 (703)
T KOG2321|consen  340 YYIP  343 (703)
T ss_pred             EEcc
Confidence            6544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=2.6e-17  Score=139.74  Aligned_cols=334  Identities=10%  Similarity=0.104  Sum_probs=214.3

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe---
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG---   79 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---   79 (458)
                      ..+++++|+++|.+. +..++|++..++..+.+                     ..  ...+.++.|||.|.+|.|=   
T Consensus        39 v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt---------------------~~--~~~~~~L~fSP~g~yL~T~e~~   94 (566)
T KOG2315|consen   39 VFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLC---------------------VE--LKKTYDLLFSPKGNYLLTWEPW   94 (566)
T ss_pred             eEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEE---------------------ec--cceeeeeeeccccccccccccc
Confidence            456888898888776 77899999997753311                     11  1268899999999998762   


Q ss_pred             --cC-----CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           80 --SD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        80 --~~-----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                        ..     ...+++|+++++.....+....... +++.|++  |..+. .--..+.+.+|+..+.+...   -.-|...
T Consensus        95 ~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~--dEsl~-arlv~nev~f~~~~~f~~~~---~kl~~~~  167 (566)
T KOG2315|consen   95 AIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI--DESLA-ARLVSNEVQFYDLGSFKTIQ---HKLSVSG  167 (566)
T ss_pred             ccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc--chhhh-hhhhcceEEEEecCCcccee---eeeeccc
Confidence              11     2457899999965554443333333 6889997  65443 33334689999987754433   2336778


Q ss_pred             eEEEEEcCCC-CeEEEE-----ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC--
Q 012712          153 AHKLAIEPGS-PHVFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--  224 (458)
Q Consensus       153 v~~~~~~~~~-~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--  224 (458)
                      |+.+.++|.. +..+++     .+.-+.+++|........+.......       ....-..+.|++.+..+|+.++.  
T Consensus       168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-------Fkadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-------FKADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-------cccceeEEEeccCCceEEEEEEEee
Confidence            9999999973 333333     34456799998763332222211110       11122457788764445544432  


Q ss_pred             ---------CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---CcEEEEEccCC
Q 012712          225 ---------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYLFTQDMG  292 (458)
Q Consensus       225 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~i~i~~~~~~  292 (458)
                               +.+++++++....                ..+.-...++|.++.|+|+++-+++...   -++.+||++..
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s----------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~  304 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGES----------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK  304 (566)
T ss_pred             cCCCccccccceEEEEEecCce----------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence                     2357777776322                1122234789999999999987665542   37999998752


Q ss_pred             CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---CeEEE
Q 012712          293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFI  369 (458)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~i  369 (458)
                                                             ++..+....    -+++-| +|.|++|+.++-+   |.|.+
T Consensus       305 ---------------------------------------~v~df~egp----RN~~~f-np~g~ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  305 ---------------------------------------PVFDFPEGP----RNTAFF-NPHGNIILLAGFGNLPGDMEV  340 (566)
T ss_pred             ---------------------------------------EeEeCCCCC----ccceEE-CCCCCEEEEeecCCCCCceEE
Confidence                                                   222222111    234555 9999999977654   89999


Q ss_pred             EEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec------CCcEEEecCCcccccccccccccEEEEEEecC
Q 012712          370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAADRATLPTNIEQVCFSIYSAD  437 (458)
Q Consensus       370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d  437 (458)
                      ||+.+.+++..+....  -+-+.|+|||++++|+..      |+.++||+..+....... .......+.|-|-
T Consensus       341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~-f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM-FKSELLQVEWRPF  411 (566)
T ss_pred             EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh-hhHhHhheeeeec
Confidence            9999999888887654  456799999999998864      788999998765443211 1114566666653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=2.8e-18  Score=154.06  Aligned_cols=233  Identities=15%  Similarity=0.098  Sum_probs=152.8

Q ss_pred             CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC---CeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      +..|.+||..... ..  .+..|...+...+|+|+|. .|+..+.+   ..|++||+++++.......           .
T Consensus       183 ~~~i~i~d~dg~~-~~--~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----------~  247 (429)
T PRK01742        183 PYEVRVADYDGFN-QF--IVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASF-----------R  247 (429)
T ss_pred             eEEEEEECCCCCC-ce--EeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecC-----------C
Confidence            4689999986544 22  2566778899999999995 45555433   4699999988764322211           1


Q ss_pred             cceEEEEECCCCCcEEEEe-cCCCeEEEE--ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712          204 VNLNAIAIDPRNANLFAVA-GSDEYTRLY--DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~-~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      .....++|+|| ++.|+.+ ..+|.+.||  |+.+++.                .....+...+....|+|||+.|+..+
T Consensus       248 g~~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~~~~~~----------------~~lt~~~~~~~~~~wSpDG~~i~f~s  310 (429)
T PRK01742        248 GHNGAPAFSPD-GSRLAFASSKDGVLNIYVMGANGGTP----------------SQLTSGAGNNTEPSWSPDGQSILFTS  310 (429)
T ss_pred             CccCceeECCC-CCEEEEEEecCCcEEEEEEECCCCCe----------------EeeccCCCCcCCEEECCCCCEEEEEE
Confidence            12346899998 5666554 567766555  5544431                11222345677899999999877665


Q ss_pred             --CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEE
Q 012712          281 --DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV  358 (458)
Q Consensus       281 --~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l  358 (458)
                        ++...+|+++....                                     ....+ .+..    ....| +|||++|
T Consensus       311 ~~~g~~~I~~~~~~~~-------------------------------------~~~~l-~~~~----~~~~~-SpDG~~i  347 (429)
T PRK01742        311 DRSGSPQVYRMSASGG-------------------------------------GASLV-GGRG----YSAQI-SADGKTL  347 (429)
T ss_pred             CCCCCceEEEEECCCC-------------------------------------CeEEe-cCCC----CCccC-CCCCCEE
Confidence              34677777654211                                     11111 1221    23456 9999999


Q ss_pred             EEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC---CcccccccccccccEEEEEEe
Q 012712          359 VSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP---NAADRATLPTNIEQVCFSIYS  435 (458)
Q Consensus       359 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~---~~~~~~~~~~~~~~v~~~~~s  435 (458)
                      +.++.++ +.+||+.+++.......+  ....+.|+|||++|+.++.++.+.+|.+   .......+..|.+.+..++||
T Consensus       348 a~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws  424 (429)
T PRK01742        348 VMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS  424 (429)
T ss_pred             EEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence            8887655 566999888754332222  2456789999999999999998887765   344445667777788999999


Q ss_pred             cC
Q 012712          436 AD  437 (458)
Q Consensus       436 ~d  437 (458)
                      |-
T Consensus       425 p~  426 (429)
T PRK01742        425 PY  426 (429)
T ss_pred             CC
Confidence            85

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.1e-17  Score=135.51  Aligned_cols=277  Identities=18%  Similarity=0.247  Sum_probs=190.2

Q ss_pred             CCCceEEEEEecCC--CEEEEecCCCeEEEEECCCcceeeee-----ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           60 HRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERVKLSF-----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        60 h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      -...|.+++|.-++  ..|...+.+..+..+.+.........     ......+|..++..   | ..|++|-.+|.+.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---d-g~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---D-GTLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---C-CEEEEEecCCcEEE
Confidence            34578888887665  45666657777888887766654432     23456677777764   3 46788888999999


Q ss_pred             eecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          133 AQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       133 w~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      |....+..  .....+..+ ..+..+.-++..++++++|+..  ..+.+||+++.+.+..-...+... -+..-...+++
T Consensus       130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~-L~LrVPvW~td  207 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR-LGLRVPVWITD  207 (412)
T ss_pred             EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc-ccceeeeeecc
Confidence            99885431  111112222 5567777788888888889999  889999999884433322211111 11112234455


Q ss_pred             EEECCC-CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEE
Q 012712          209 IAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF  287 (458)
Q Consensus       209 ~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~  287 (458)
                      +.|-|. ....|++++.-+.+++||.+.++                        .+|.++.|.                 
T Consensus       208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR------------------------RPV~~fd~~-----------------  246 (412)
T KOG3881|consen  208 IRFLEGSPNYKFATITRYHQVRLYDTRHQR------------------------RPVAQFDFL-----------------  246 (412)
T ss_pred             ceecCCCCCceEEEEecceeEEEecCcccC------------------------cceeEeccc-----------------
Confidence            666552 13566666666666666666432                        233333332                 


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                                                                          ++  .+.++.. .|+|+++++|..-|.+
T Consensus       247 ----------------------------------------------------E~--~is~~~l-~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  247 ----------------------------------------------------EN--PISSTGL-TPSGNFIYTGNTKGQL  271 (412)
T ss_pred             ----------------------------------------------------cC--cceeeee-cCCCcEEEEecccchh
Confidence                                                                22  2677776 8999999999999999


Q ss_pred             EEEEecCCeEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCC
Q 012712          368 FIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADY  438 (458)
Q Consensus       368 ~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~  438 (458)
                      ..||+..++.... +.+-.+.|+++..+|.+++||++|-|..+||+|+.+.+++.-..-...++.+-+.++-
T Consensus       272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            9999999998877 8888999999999999999999999999999999997666544455567777776554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=1.8e-17  Score=130.91  Aligned_cols=248  Identities=13%  Similarity=0.110  Sum_probs=177.5

Q ss_pred             CCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC-
Q 012712          103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL-  180 (458)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-  180 (458)
                      ..++|+|.+|++  |...+|.+.....|.||.....+ ......+..|...|+.+.|+|.. +.|++++.|..-++|.. 
T Consensus         9 ~~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecC--CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccC
Confidence            457899999999  99999999999999999988777 55556789999999999999998 67899999999999998 


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      ..++-.+.+....        .....+++.|+|. ++.|++|+.-..|.+|-.+..+-           -...+++....
T Consensus        86 ~~~~WkptlvLlR--------iNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENd-----------WWVsKhikkPi  145 (361)
T KOG1523|consen   86 SGGTWKPTLVLLR--------INRAATCVKWSPK-ENKFAVGSGARLISVCYYEQEND-----------WWVSKHIKKPI  145 (361)
T ss_pred             CCCeeccceeEEE--------eccceeeEeecCc-CceEEeccCccEEEEEEEecccc-----------eehhhhhCCcc
Confidence            4444444433322        4557899999997 79999999999999998875431           11123344456


Q ss_pred             ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...|.++.|+|++-+|++|+ |+..++|...-..........+-....                    .-+..+..+...
T Consensus       146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~--------------------PFG~lm~E~~~~  205 (361)
T KOG1523|consen  146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKM--------------------PFGQLMSEASSS  205 (361)
T ss_pred             ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCC--------------------cHHHHHHhhccC
Confidence            78899999999999999998 567888875432221111111111000                    002233334322


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe-EEEEeecCCceeeEEEecCC
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPH  396 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~  396 (458)
                      .  ..+..+.| +|+|..|+-.+.|..+.+-|..... .+..+....-+..++.|-.+
T Consensus       206 g--gwvh~v~f-s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  206 G--GWVHGVLF-SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             C--CceeeeEe-CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence            2  35899998 9999999999999999999986554 34444333356666666543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.1e-18  Score=142.94  Aligned_cols=199  Identities=16%  Similarity=0.153  Sum_probs=150.8

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .++|+.+|..|++|+.||++|||+......+                     .....|.+.|.++.|+|||++|++-+.|
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------------l~e~~~~~eV~DL~FS~dgk~lasig~d  207 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------------LEEIAHHAEVKDLDFSPDGKFLASIGAD  207 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhh---------------------hhhHhhcCccccceeCCCCcEEEEecCC
Confidence            3678999999999999999999997644444                     2356799999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCC---eEE--EEEcCCCcEEEeecccccc---eeeeeccccccce
Q 012712           83 RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDD---RSI--VTCAADGQVRHAQILERGG---VETKLLGKHQGRA  153 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~---~~l--~s~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v  153 (458)
                       ..+||+++++..+...- .........+.|+.  |+   .++  +....-+.|+.|++.....   ........-...|
T Consensus       208 -~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si  284 (398)
T KOG0771|consen  208 -SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI  284 (398)
T ss_pred             -ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence             89999999997666552 23445567788887  65   332  3333456677766643322   1111122233579


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      .+++.+++| ++++.|+.||.|.+++..+.+..+..+..         |..-|+.+.|+|+ .+++++.+.+....+..+
T Consensus       285 Ssl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~~vk~a---------H~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  285 SSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQYVKEA---------HLGFVTGLTFSPD-SRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             eeEEEcCCC-cEEEEeccCCcEEEEEeceeeeeEeehhh---------heeeeeeEEEcCC-cCcccccccCCceeEEEE
Confidence            999999999 78999999999999999888776655422         6668999999998 789999999988888887


Q ss_pred             CCC
Q 012712          234 RKY  236 (458)
Q Consensus       234 ~~~  236 (458)
                      .-.
T Consensus       354 ~vd  356 (398)
T KOG0771|consen  354 AVD  356 (398)
T ss_pred             eec
Confidence            653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.80  E-value=4.9e-18  Score=143.19  Aligned_cols=196  Identities=13%  Similarity=0.141  Sum_probs=133.8

Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCCcEEEEEccCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGL  293 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~~~~~~~  293 (458)
                      +.-++.|-.-|.+.+.|....+....+...           ....+..++++.|-|.+  .++++-..+.+++||.....
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~-----------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~  253 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEE-----------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC  253 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhc-----------ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc
Confidence            456777888899999988764322211110           01124689999999864  56677778899999874321


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                      ....          ........+....+..........++..+.--..  .|...+| +|||++||+.+.||.+||||..
T Consensus       254 ~~t~----------p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fd  320 (636)
T KOG2394|consen  254 GATA----------PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFD  320 (636)
T ss_pred             cCCC----------CcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeecc
Confidence            1110          0011111111111111111111122222222222  4888998 9999999999999999999999


Q ss_pred             CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEe
Q 012712          374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYS  435 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s  435 (458)
                      +.+++..++..-+...|++|||||++|++|++|-.|.||.+...+.+ .-.+|...|..|+|.
T Consensus       321 t~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  321 TQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             HHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            98888888877788999999999999999999999999999988776 557888999999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.8e-16  Score=127.35  Aligned_cols=198  Identities=12%  Similarity=0.070  Sum_probs=143.1

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV  141 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  141 (458)
                      -.+..++|++.-..+|++..|-.|++|+-.. .+...+.......|++++|-|. .++.|+.|+. +-|.+|........
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl-saselavgCr-~gIciW~~s~tln~  175 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL-SASELAVGCR-AGICIWSDSRTLNA  175 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC-Ccceeeeeec-ceeEEEEcCccccc
Confidence            4578899998767788999999999999766 4445554556778999999994 4456777776 55899987532211


Q ss_pred             ------------eeeeccccccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          142 ------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       142 ------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                                  +....++| .+|+++.|++|| ..+++++. |..|.+||..++..+.....          ..+.+.-
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~----------glgg~sl  243 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPK----------GLGGFSL  243 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccccc----------CCCceee
Confidence                        11113344 689999999999 56777765 57899999999987665521          3346788


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT  288 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~  288 (458)
                      +.|+|| +.+|+++.-|+..++|+.......              ..... ..+.|....|+|+|++|.....+.-.+|.
T Consensus       244 LkwSPd-gd~lfaAt~davfrlw~e~q~wt~--------------erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lys  307 (445)
T KOG2139|consen  244 LKWSPD-GDVLFAATCDAVFRLWQENQSWTK--------------ERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYS  307 (445)
T ss_pred             EEEcCC-CCEEEEecccceeeeehhccccee--------------cceec-cCCceeeeeecCCCCEEEEEEcCCceEEE
Confidence            999998 689999999999999965443211              11111 23589999999999988877766666665


Q ss_pred             cc
Q 012712          289 QD  290 (458)
Q Consensus       289 ~~  290 (458)
                      +.
T Consensus       308 l~  309 (445)
T KOG2139|consen  308 LT  309 (445)
T ss_pred             Ee
Confidence            44

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.6e-16  Score=142.27  Aligned_cols=235  Identities=15%  Similarity=0.139  Sum_probs=152.3

Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      ..|.++|........   +..+...+...+|+|+|..++++..  .+..|.+||+.+++.......           ...
T Consensus       179 ~~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-----------~~~  244 (429)
T PRK03629        179 YELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----------PRH  244 (429)
T ss_pred             eeEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-----------CCC
Confidence            368888876544322   3446678899999999955444332  235799999988764333221           112


Q ss_pred             eEEEEECCCCCcEEE-EecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712          206 LNAIAIDPRNANLFA-VAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       206 v~~~~~~p~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                      ...+.|+||+ +.|+ +...+|  .|++||+.+++..               .+ ..+...+....|+|||+.|+..++.
T Consensus       245 ~~~~~~SPDG-~~La~~~~~~g~~~I~~~d~~tg~~~---------------~l-t~~~~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        245 NGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR---------------QV-TDGRSNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             cCCeEECCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ec-cCCCCCcCceEECCCCCEEEEEeCC
Confidence            4468999985 5554 445455  5888999876421               11 1123456788999999988877642


Q ss_pred             --c--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEE
Q 012712          283 --F--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV  358 (458)
Q Consensus       283 --~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l  358 (458)
                        .  |+++++.++.                                       ...+.....  ......| +|||++|
T Consensus       308 ~g~~~Iy~~d~~~g~---------------------------------------~~~lt~~~~--~~~~~~~-SpDG~~I  345 (429)
T PRK03629        308 AGRPQVYKVNINGGA---------------------------------------PQRITWEGS--QNQDADV-SSDGKFM  345 (429)
T ss_pred             CCCceEEEEECCCCC---------------------------------------eEEeecCCC--CccCEEE-CCCCCEE
Confidence              3  5555554421                                       112211111  1345666 9999999


Q ss_pred             EEecCC---CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCc---EEEecCCcccccccccccccEEEE
Q 012712          359 VSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD---IKILTPNAADRATLPTNIEQVCFS  432 (458)
Q Consensus       359 ~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~---i~iw~~~~~~~~~~~~~~~~v~~~  432 (458)
                      +..+.+   ..|++||+.+++.. .+... .......|+|||++|+.++.++.   +.++++++.....+..|.+.+..+
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p  423 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP  423 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCc
Confidence            876543   36888999877643 33321 22356789999999999887764   778888777777777788889999


Q ss_pred             EEecC
Q 012712          433 IYSAD  437 (458)
Q Consensus       433 ~~s~d  437 (458)
                      +|+|-
T Consensus       424 ~Wsp~  428 (429)
T PRK03629        424 AWSPY  428 (429)
T ss_pred             ccCCC
Confidence            99983

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=9.4e-17  Score=144.59  Aligned_cols=234  Identities=10%  Similarity=0.044  Sum_probs=151.0

Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      ..|.+||...... ..+ ..+...+...+|+|  |++.|+..+.+   ..|.+|++.+++...   +..+.+...+..|+
T Consensus       184 ~~l~i~D~~g~~~-~~l-t~~~~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~S  256 (433)
T PRK04922        184 YALQVADSDGYNP-QTI-LRSAEPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFS  256 (433)
T ss_pred             EEEEEECCCCCCc-eEe-ecCCCccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceEC
Confidence            4699999865443 444 45677899999999  99999987643   469999998766433   33334445678999


Q ss_pred             CCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCe--EEEEecC
Q 012712          160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEY--TRLYDIR  234 (458)
Q Consensus       160 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--i~i~d~~  234 (458)
                      |+|..++++.+.+|  .|++||+.+++......           +.......+|+|| +..++..+ .+|.  |+++|+.
T Consensus       257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-----------~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~  324 (433)
T PRK04922        257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-----------HFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAAS  324 (433)
T ss_pred             CCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-----------CCCCccceEECCC-CCEEEEEECCCCCceEEEEECC
Confidence            99976666666665  59999998876433221           1112456899998 55555444 4554  6666665


Q ss_pred             CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC---cEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      +++..               .+. .........+|+|+|+.|+..+ ++   .|.+|++.++..                
T Consensus       325 ~g~~~---------------~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----------------  372 (433)
T PRK04922        325 GGSAE---------------RLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----------------  372 (433)
T ss_pred             CCCeE---------------Eee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe----------------
Confidence            54321               011 1122344689999999988764 22   489999876421                


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---CeEEEEEecCCeEEEEeecCCce
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHV  387 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~  387 (458)
                                             ..+.....   .....| +|||++|+..+.+   +.|+++++ ++...+.+..+.+.
T Consensus       373 -----------------------~~Lt~~~~---~~~p~~-spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~~g~  424 (433)
T PRK04922        373 -----------------------RTLTPGSL---DESPSF-APNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSADGE  424 (433)
T ss_pred             -----------------------EECCCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccCCCC
Confidence                                   11111111   233466 9999988876653   46888887 45556666666677


Q ss_pred             eeEEEecC
Q 012712          388 VNCIEPHP  395 (458)
Q Consensus       388 v~~~~~s~  395 (458)
                      +...+|+|
T Consensus       425 ~~~p~wsp  432 (433)
T PRK04922        425 VREPAWSP  432 (433)
T ss_pred             CCCCccCC
Confidence            88888887

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=3.6e-16  Score=140.05  Aligned_cols=235  Identities=12%  Similarity=0.095  Sum_probs=153.0

Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      ..|.+||.+.... ..+ ..+...+...+|+|  ||+.|+..+.   +..|.+|++.+++....   ...........|+
T Consensus       179 ~~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~l---~~~~~~~~~~~~S  251 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQV---ASFPRHNGAPAFS  251 (429)
T ss_pred             eeEEEEcCCCCCC-EEe-ecCCCceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEEc---cCCCCCcCCeEEC
Confidence            4799999876554 333 34667899999999  9999987542   45799999987654332   2233344568999


Q ss_pred             CCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCeEEEE--ecC
Q 012712          160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLY--DIR  234 (458)
Q Consensus       160 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~--d~~  234 (458)
                      |+|..++++.+.+|  .|++||+++++......           ....+....|+|+ ++.|+..+ .++...+|  |+.
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-----------~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~  319 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNIN  319 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-----------CCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECC
Confidence            99966655555555  58899998876543322           1224578899998 56555444 44444444  555


Q ss_pred             CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      +++..               .+ ...........|+|||++|+..+.  +  .+++||+.++.                 
T Consensus       320 ~g~~~---------------~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-----------------  366 (429)
T PRK03629        320 GGAPQ---------------RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-----------------  366 (429)
T ss_pred             CCCeE---------------Ee-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-----------------
Confidence            44311               11 111233557889999999887652  2  48888887642                 


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe---EEEEEecCCeEEEEeecCCce
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR---IFIWKKKGGELIRVIEADRHV  387 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~  387 (458)
                                            ...+.....   .....| +|||++|+.++.++.   ++++++ +|+....+.+|.+.
T Consensus       367 ----------------------~~~Lt~~~~---~~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~  419 (429)
T PRK03629        367 ----------------------VQVLTDTFL---DETPSI-APNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ  419 (429)
T ss_pred             ----------------------eEEeCCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC
Confidence                                  111211111   224556 999999998887754   677777 57777778888888


Q ss_pred             eeEEEecCC
Q 012712          388 VNCIEPHPH  396 (458)
Q Consensus       388 v~~~~~s~~  396 (458)
                      +...+|+|-
T Consensus       420 ~~~p~Wsp~  428 (429)
T PRK03629        420 VKFPAWSPY  428 (429)
T ss_pred             cCCcccCCC
Confidence            999999983

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1e-14  Score=115.44  Aligned_cols=240  Identities=14%  Similarity=0.148  Sum_probs=162.6

Q ss_pred             ceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC------CeEEEEe
Q 012712          106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFD  179 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd  179 (458)
                      ...+++|..  |..-++.|..+| .++|+.+.-+.........-.-.+..+-|-. + .+.+.|+.+      ..+.|||
T Consensus         7 ~~lsvs~NQ--D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~-N-~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    7 KTLSVSFNQ--DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS-N-YLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             ceeEEEEcc--CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh-c-eEEEecCCCCCCCCCceEEEEe
Confidence            345589998  888888887765 7999987644322211111111222222322 1 344445443      4799999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC-ccCCCccCCCCCCCcCCCcccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      -....++..+.           ...+|.++.+.++   .+++.- .+.|++|..... +....            .....
T Consensus        82 D~k~~~i~el~-----------f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~------------~et~~  134 (346)
T KOG2111|consen   82 DLKERCIIELS-----------FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHV------------IETRS  134 (346)
T ss_pred             cccCcEEEEEE-----------eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheee------------eeccc
Confidence            66666666665           4457999999985   444443 568999998743 22211            01111


Q ss_pred             ccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          259 DEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       259 ~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                       ......++.-..+..+||.-+  -|.|.+-|+...+.                                    .....+
T Consensus       135 -NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------------------------------------~~p~~I  177 (346)
T KOG2111|consen  135 -NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------------------------------------NAPSII  177 (346)
T ss_pred             -CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc------------------------------------CCceEE
Confidence             122344444444556777766  45799999876321                                    134677


Q ss_pred             cCccceeeeeEEEEecCCCcEEEEecCCCe-EEEEEecCCeEEEEeecC--CceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ..|.+.  |.+++. ..+|..+|+++..|+ |||||..+|+++.+++-.  ...|.+++|||+..+||++|+-|+|+|+.
T Consensus       178 ~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  178 NAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             EcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            889886  888988 999999999999997 799999999999998642  35799999999999999999999999998


Q ss_pred             CCcc
Q 012712          414 PNAA  417 (458)
Q Consensus       414 ~~~~  417 (458)
                      +...
T Consensus       255 l~~~  258 (346)
T KOG2111|consen  255 LRDT  258 (346)
T ss_pred             eecC
Confidence            8753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.6e-15  Score=122.10  Aligned_cols=238  Identities=13%  Similarity=0.077  Sum_probs=153.3

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCC-CEEEEecC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDG-DILISGSD   81 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~-~~l~s~~~   81 (458)
                      +++++.-.-+|++..|-.|||||-+. +...                     .++ .-...|+|++|-|.+ .-|+.|..
T Consensus       104 ~aWhqH~~~fava~nddvVriy~kss-t~pt---------------------~Lks~sQrnvtclawRPlsaselavgCr  161 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPT---------------------KLKSVSQRNVTCLAWRPLSASELAVGCR  161 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCC-CCCc---------------------eecchhhcceeEEEeccCCcceeeeeec
Confidence            34444444577788899999999875 3331                     132 234689999999955 67777777


Q ss_pred             CCeEEEEECCCcceee------------ee-ccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeecc
Q 012712           82 DRRVILWDWKTERVKL------------SF-HSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLG  147 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~------------~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~  147 (458)
                      .| |.+|..+......            .+ ..+| .+|++++|.+  ||..+++++. |..|.+||..++......  .
T Consensus       162 ~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~  235 (445)
T KOG2139|consen  162 AG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTGQKIPLI--P  235 (445)
T ss_pred             ce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeecccCcceEEEEcCCCCCccccc--c
Confidence            55 9999875321110            01 1344 6899999999  9999999886 678999999998876642  2


Q ss_pred             ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe
Q 012712          148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY  227 (458)
Q Consensus       148 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  227 (458)
                      .-.+.+.-+.|+||+ ..|++++-|+..++|+....-.......          ..+.|...+|+|++..+|++++..-.
T Consensus       236 ~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~l----------gsgrvqtacWspcGsfLLf~~sgsp~  304 (445)
T KOG2139|consen  236 KGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWIL----------GSGRVQTACWSPCGSFLLFACSGSPR  304 (445)
T ss_pred             cCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceec----------cCCceeeeeecCCCCEEEEEEcCCce
Confidence            345678889999999 6788899999999996554332222221          33478999999997666777665544


Q ss_pred             EEEEecCCCccCCCccCCC------CCCCcCCCccc---cccccceeEEEeCCCCcEEEEecCC
Q 012712          228 TRLYDIRKYKWDGSTDFGQ------PADYFCPPNLI---GDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       228 i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                      +  |.+..........-..      ++.........   .--.+.+.+++|.|.|.+||+.-.+
T Consensus       305 l--ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  305 L--YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             E--EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence            4  4433221111100000      00000000000   1114678999999999999987643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=4.3e-14  Score=120.53  Aligned_cols=317  Identities=13%  Similarity=0.163  Sum_probs=204.3

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc-----C-----CCcE
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-----A-----DGQV  130 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-----~-----dg~i  130 (458)
                      ..+++..++|++|+++|.+.. ..++|++...+..+....  .. .++++.|+|  -+.+|.+--     .     .-.+
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~--~~-~~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn~  107 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE--LK-KTYDLLFSP--KGNYLLTWEPWAIYGPKNASNPNV  107 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec--cc-eeeeeeecc--cccccccccccccccCCCCCCCce
Confidence            345778899999998887654 679999998886555542  22 889999999  888887521     1     2457


Q ss_pred             EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      ++|+++++...... ...... -++..|++|. . +++--..+.+.+|++...+....--           +...+..+.
T Consensus       108 ~v~~vet~~~~s~~-q~k~Q~-~W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~~~kl-----------~~~~i~~f~  172 (566)
T KOG2315|consen  108 LVYNVETGVQRSQI-QKKMQN-GWVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTIQHKL-----------SVSGITMLS  172 (566)
T ss_pred             eeeeeccceehhhe-ehhhhc-Ccccccccch-h-hhhhhhcceEEEEecCCccceeeee-----------eccceeeEE
Confidence            79999884333221 111222 2688999987 3 3443445789999987733221111           444688899


Q ss_pred             ECCC-CCcEEEE-----ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE-EE-Eec--
Q 012712          211 IDPR-NANLFAV-----AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LV-SYN--  280 (458)
Q Consensus       211 ~~p~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~-~~~--  280 (458)
                      ++|. ....+++     .+.-+.|++|..........      +   ..+.+.   ...-..+.|++-|.- |+ +.+  
T Consensus       173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~------~---a~ksFF---kadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP------V---ANKSFF---KADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             ecCCCCCceEEEEccCCCCCCcEEEEeccccccccch------h---hhcccc---ccceeEEEeccCCceEEEEEEEee
Confidence            9985 2334443     45667899998873321110      0   011111   233456778887752 22 211  


Q ss_pred             C---------CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          281 D---------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       281 ~---------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                      |         .++++++++..                                      .....+. ..+  .|.++.| 
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~--------------------------------------s~~V~L~-k~G--PVhdv~W-  278 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGE--------------------------------------SVSVPLL-KEG--PVHDVTW-  278 (566)
T ss_pred             cCCCccccccceEEEEEecCc--------------------------------------eEEEecC-CCC--CceEEEE-
Confidence            1         13777776521                                      1111121 122  4899999 


Q ss_pred             cCCCcEEE--EecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCccccccccccc
Q 012712          352 GPKCEYVV--SGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNI  426 (458)
Q Consensus       352 s~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~  426 (458)
                      +|+++-++  .|-.-..+.|||+ .+.++..+.  .++-+++-|+|.|++|+.+|-+   |.+-|||+.+.+++.-.. .
T Consensus       279 ~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-a  354 (566)
T KOG2315|consen  279 SPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-A  354 (566)
T ss_pred             CCCCCEEEEEEecccceEEEEcC-CCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-c
Confidence            99997655  4566789999998 567776663  5677899999999999887764   789999999865543222 2


Q ss_pred             ccEEEEEEecCCcEEEeeec------CCceEEEEEe
Q 012712          427 EQVCFSIYSADYWWSKSQNF------SCSILLFEWL  456 (458)
Q Consensus       427 ~~v~~~~~s~d~~~l~s~~~------d~~i~~w~~~  456 (458)
                      ..-+-+.|+|||.+++|++.      |+.++||+|.
T Consensus       355 ~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  355 ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            23456789999999988764      6889999984

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=8.8e-15  Score=115.85  Aligned_cols=237  Identities=14%  Similarity=0.192  Sum_probs=157.6

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCc--ceeEEEEccCCCCeEEEE-EcCC------CcEEEee
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND--NVFQAKIMPFTDDRSIVT-CAAD------GQVRHAQ  134 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s-~~~d------g~i~vw~  134 (458)
                      ..+++|+.|..-++.|..+| .+||+.+.-+...+. ..+.+  .+..+-|    -.++|+- |+.+      ..+.|||
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLf----R~N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhh----hhceEEEecCCCCCCCCCceEEEEe
Confidence            44599999999999888877 899998764332221 11222  2333334    3345554 3332      4699999


Q ss_pred             cccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC-CCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      =...+++..  + ....+|.++.+.++.   +++. .++.|.+|... ..+....+....        ....+-+++-..
T Consensus        82 D~k~~~i~e--l-~f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~--------NPkGlC~~~~~~  146 (346)
T KOG2111|consen   82 DLKERCIIE--L-SFNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRS--------NPKGLCSLCPTS  146 (346)
T ss_pred             cccCcEEEE--E-EeccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeeccc--------CCCceEeecCCC
Confidence            544444443  2 356899999999864   3433 35789999987 444444433221        111233333222


Q ss_pred             CCCcEEEE-ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc-EEEEEcc
Q 012712          214 RNANLFAV-AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYLFTQD  290 (458)
Q Consensus       214 ~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~-i~i~~~~  290 (458)
                      . ..+|+. |-.-|.|++-|+...+..             +......|...|.+++.+.+|.++|+++ .|+ |+|||..
T Consensus       147 ~-k~~LafPg~k~GqvQi~dL~~~~~~-------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~  212 (346)
T KOG2111|consen  147 N-KSLLAFPGFKTGQVQIVDLASTKPN-------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE  212 (346)
T ss_pred             C-ceEEEcCCCccceEEEEEhhhcCcC-------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence            2 334443 446689999999876531             2456778999999999999999999999 454 9999999


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      ++.                                      .+..++.......|.+++| ||+..+||++++.|+++||
T Consensus       213 ~g~--------------------------------------~l~E~RRG~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  213 DGT--------------------------------------LLQELRRGVDRADIYCIAF-SPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             CCc--------------------------------------EeeeeecCCchheEEEEEe-CCCccEEEEEcCCCeEEEE
Confidence            854                                      3444444334446999999 9999999999999999999


Q ss_pred             EecC
Q 012712          371 KKKG  374 (458)
Q Consensus       371 d~~~  374 (458)
                      .+..
T Consensus       254 ~l~~  257 (346)
T KOG2111|consen  254 SLRD  257 (346)
T ss_pred             Eeec
Confidence            9865

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=1.5e-17  Score=137.81  Aligned_cols=226  Identities=15%  Similarity=0.213  Sum_probs=182.6

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR   84 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   84 (458)
                      -|+.+|+.|+.|+..|.|-.+|..++++...                     +. -...|..+.|-.+.+++|++-. ..
T Consensus       136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---------------------i~-v~Etv~Dv~~LHneq~~AVAQK-~y  192 (545)
T KOG1272|consen  136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---------------------IN-VMETVRDVTFLHNEQFFAVAQK-KY  192 (545)
T ss_pred             eecCCccEEEecCCccceeeeecccceeeee---------------------ee-hhhhhhhhhhhcchHHHHhhhh-ce
Confidence            3778999999999999999999999887733                     22 3467899999988888888755 67


Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH  164 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  164 (458)
                      +.||| ..|..++.+ ..| ..|..+.|.|  .--+|++++..|.++.-|+..++.+..  +..-.+.+..++-+|-+ -
T Consensus       193 ~yvYD-~~GtElHCl-k~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~~G~~~vm~qNP~N-a  264 (545)
T KOG1272|consen  193 VYVYD-NNGTELHCL-KRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVAS--IRTGAGRTDVMKQNPYN-A  264 (545)
T ss_pred             EEEec-CCCcEEeeh-hhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHH--HHccCCccchhhcCCcc-c
Confidence            99999 457776776 333 5799999999  888899999999999999999988766  55566788889999987 6


Q ss_pred             EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccC
Q 012712          165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF  244 (458)
Q Consensus       165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  244 (458)
                      ++-+|...|+|.+|.....+++..+.+          +.++|.++++.++ |+++++.+.|..++|||++.......   
T Consensus       265 Vih~GhsnGtVSlWSP~skePLvKiLc----------H~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t---  330 (545)
T KOG1272|consen  265 VIHLGHSNGTVSLWSPNSKEPLVKILC----------HRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHT---  330 (545)
T ss_pred             eEEEcCCCceEEecCCCCcchHHHHHh----------cCCCcceEEECCC-CcEEeecccccceeEeeeccccccce---
Confidence            788899999999999998888766665          6668999999997 79999999999999999998753221   


Q ss_pred             CCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712          245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ  289 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~  289 (458)
                                 ...  ..+...+++|..| +||.+..+.+.+|.-
T Consensus       331 -----------~~t--p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  331 -----------YRT--PHPASNLSLSQKG-LLALSYGDHVQIWKD  361 (545)
T ss_pred             -----------eec--CCCcccccccccc-ceeeecCCeeeeehh
Confidence                       111  2356677887766 677777788999953

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=3.9e-16  Score=140.63  Aligned_cols=234  Identities=13%  Similarity=0.057  Sum_probs=150.4

Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC---CCeEEEEeCCCCCccceeeecccCCCCcceeec
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV  204 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (458)
                      ..|.+||...... ..  +..+...+.+.+|+|++. .|+..+.   +..|++||+.+++......           ...
T Consensus       184 ~~l~i~D~~g~~~-~~--lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~-----------~~g  248 (433)
T PRK04922        184 YALQVADSDGYNP-QT--ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVAS-----------FRG  248 (433)
T ss_pred             EEEEEECCCCCCc-eE--eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEecc-----------CCC
Confidence            3588899854333 22  555677889999999995 4554443   3469999998876533221           111


Q ss_pred             ceEEEEECCCCCcEEEEecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-
Q 012712          205 NLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-  281 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  281 (458)
                      ...+..|+|++..++++.+.+|  .|++||+.+++..                ....+.......+|+|||+.|+..++ 
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----------------~lt~~~~~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----------------RLTNHFGIDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----------------ECccCCCCccceEECCCCCEEEEEECC
Confidence            2457899998544555555555  5999999876521                11122233467899999998887763 


Q ss_pred             -Cc--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEE
Q 012712          282 -EF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV  358 (458)
Q Consensus       282 -~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l  358 (458)
                       +.  ++++++.++.                                       .+.+..+..  .....+| +|||++|
T Consensus       313 ~g~~~iy~~dl~~g~---------------------------------------~~~lt~~g~--~~~~~~~-SpDG~~I  350 (433)
T PRK04922        313 GGRPQIYRVAASGGS---------------------------------------AERLTFQGN--YNARASV-SPDGKKI  350 (433)
T ss_pred             CCCceEEEEECCCCC---------------------------------------eEEeecCCC--CccCEEE-CCCCCEE
Confidence             23  6666665431                                       111111111  1235677 9999999


Q ss_pred             EEecCCC---eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcccccccccccccEEEE
Q 012712          359 VSGSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQVCFS  432 (458)
Q Consensus       359 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~v~~~  432 (458)
                      +..+.++   .|++||+.+++.. .+. +........|+|||++|+..+.+   +.|.++++.++....+..+.+.+..+
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p  428 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREP  428 (433)
T ss_pred             EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCC
Confidence            8765432   6999999877654 443 22245577999999988776653   46888888776666666666678888


Q ss_pred             EEec
Q 012712          433 IYSA  436 (458)
Q Consensus       433 ~~s~  436 (458)
                      +|||
T Consensus       429 ~wsp  432 (433)
T PRK04922        429 AWSP  432 (433)
T ss_pred             ccCC
Confidence            8887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.4e-15  Score=137.27  Aligned_cols=235  Identities=13%  Similarity=0.070  Sum_probs=149.2

Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      ..|.++|...... ..  +..|...+...+|+|+|..++++..  .+..|.+||+.+++......           ....
T Consensus       182 ~~l~~~d~dg~~~-~~--lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-----------~~g~  247 (435)
T PRK05137        182 KRLAIMDQDGANV-RY--LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-----------FPGM  247 (435)
T ss_pred             eEEEEECCCCCCc-EE--EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-----------CCCc
Confidence            3688888754333 22  5567788999999999954444332  24689999998886533221           2224


Q ss_pred             eEEEEECCCCCcEEEEecCCCe--EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-
Q 012712          206 LNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-  282 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-  282 (458)
                      +...+|+||+..++++.+.++.  |++||+.+++..                ....+........|+|||+.|+..++. 
T Consensus       248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------~Lt~~~~~~~~~~~spDG~~i~f~s~~~  311 (435)
T PRK05137        248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----------------RLTDSPAIDTSPSYSPDGSQIVFESDRS  311 (435)
T ss_pred             ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----------------EccCCCCccCceeEcCCCCEEEEEECCC
Confidence            5678999985445556666655  777788765421                112233445678999999988877632 


Q ss_pred             ---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712          283 ---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV  359 (458)
Q Consensus       283 ---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~  359 (458)
                         .|+++|+..+.                                       .+.+..+..  .+....| +|||++|+
T Consensus       312 g~~~Iy~~d~~g~~---------------------------------------~~~lt~~~~--~~~~~~~-SpdG~~ia  349 (435)
T PRK05137        312 GSPQLYVMNADGSN---------------------------------------PRRISFGGG--RYSTPVW-SPRGDLIA  349 (435)
T ss_pred             CCCeEEEEECCCCC---------------------------------------eEEeecCCC--cccCeEE-CCCCCEEE
Confidence               48888866421                                       122221111  1445667 99999998


Q ss_pred             EecCC---CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC------CcEEEecCCcccccccccccccEE
Q 012712          360 SGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE------SDIKILTPNAADRATLPTNIEQVC  430 (458)
Q Consensus       360 ~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~v~  430 (458)
                      ..+.+   ..|.+||+..+. .+.+. ....+..+.|+|||++|+..+.+      ..|.++++.++....+. ..+.+.
T Consensus       350 ~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~-~~~~~~  426 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP-TPGDAS  426 (435)
T ss_pred             EEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc-CCCCcc
Confidence            76543   368888875544 33343 22346788999999988765443      25778888776655544 344577


Q ss_pred             EEEEecC
Q 012712          431 FSIYSAD  437 (458)
Q Consensus       431 ~~~~s~d  437 (458)
                      ..+|+|-
T Consensus       427 ~p~Wsp~  433 (435)
T PRK05137        427 DPAWSPL  433 (435)
T ss_pred             CcccCCC
Confidence            7888873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.1e-15  Score=137.28  Aligned_cols=238  Identities=12%  Similarity=0.059  Sum_probs=142.9

Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      ..|.++|... .....  +..+...+.+.+|+|++..++++...+  ..|.+||+.+++......           ....
T Consensus       176 ~~L~~~D~dG-~~~~~--l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-----------~~g~  241 (427)
T PRK02889        176 YQLQISDADG-QNAQS--ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-----------FKGS  241 (427)
T ss_pred             cEEEEECCCC-CCceE--eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------CCCC
Confidence            3566667633 22222  445677889999999995444433222  459999999886543221           1123


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecC--CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--  281 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  281 (458)
                      ....+|+||+..++++.+.+|...+|.+.  .+..               . ....+........|+|||+.|+..++  
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---------------~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~  305 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL---------------R-RLTQSSGIDTEPFFSPDGRSIYFTSDRG  305 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCCc---------------E-ECCCCCCCCcCeEEcCCCCEEEEEecCC
Confidence            46789999854444567778876666543  3221               1 11122334566789999998886663  


Q ss_pred             CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712          282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG  361 (458)
Q Consensus       282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~  361 (458)
                      +...+|.+....                                    . ....+.....  ......| +|||++|+..
T Consensus       306 g~~~Iy~~~~~~------------------------------------g-~~~~lt~~g~--~~~~~~~-SpDG~~Ia~~  345 (427)
T PRK02889        306 GAPQIYRMPASG------------------------------------G-AAQRVTFTGS--YNTSPRI-SPDGKLLAYI  345 (427)
T ss_pred             CCcEEEEEECCC------------------------------------C-ceEEEecCCC--CcCceEE-CCCCCEEEEE
Confidence            345555543210                                    0 0111111111  1234566 9999999877


Q ss_pred             cCCC---eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEecCCcccccccccccccEEEEEEe
Q 012712          362 SDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAADRATLPTNIEQVCFSIYS  435 (458)
Q Consensus       362 ~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~v~~~~~s  435 (458)
                      +.++   .|++||+.+++... +..+ .......|+|||++|+.++.++   .+.+.++.......+..+.+.+...+||
T Consensus       346 s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws  423 (427)
T PRK02889        346 SRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWG  423 (427)
T ss_pred             EccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccC
Confidence            6554   69999998876543 3322 2346789999999988776544   3555566544444455566678888888


Q ss_pred             cC
Q 012712          436 AD  437 (458)
Q Consensus       436 ~d  437 (458)
                      |-
T Consensus       424 p~  425 (427)
T PRK02889        424 PF  425 (427)
T ss_pred             CC
Confidence            73

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.73  E-value=1.1e-15  Score=129.33  Aligned_cols=253  Identities=15%  Similarity=0.166  Sum_probs=166.0

Q ss_pred             CCeEEEEEcCCCcEEEeecccccce----eeeeccccccceEEEEE-----cCCCCeEEEEecCCCeEEEEeCCCCCccc
Q 012712          117 DDRSIVTCAADGQVRHAQILERGGV----ETKLLGKHQGRAHKLAI-----EPGSPHVFYTCGEDGLVQHFDLRTGAATE  187 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  187 (458)
                      .|.+|+..-. ..+.+|+.+.+...    ....+.+.  ...|-+|     .|.+ .-++.+-.-|.+.+.|....+..+
T Consensus       134 ~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sk  209 (636)
T KOG2394|consen  134 KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSK  209 (636)
T ss_pred             CCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCC-cceEEeeccCceEEecchhhHHHH
Confidence            5666665443 36788887743222    11112211  1222233     3444 345667677889998877643333


Q ss_pred             eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC---CC----------CCCcCCC
Q 012712          188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG---QP----------ADYFCPP  254 (458)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~----------~~~~~~~  254 (458)
                      .+.      ...+.....++|+.|-|-+...|+++-.+|.+++||.....-.....+.   .+          .....|.
T Consensus       210 lfn------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv  283 (636)
T KOG2394|consen  210 LFN------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV  283 (636)
T ss_pred             hhh------hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence            222      1222245679999999987788999999999999987432111110000   00          0000111


Q ss_pred             ccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712          255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP  333 (458)
Q Consensus       255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (458)
                      ....-..+.|...+|+|||++||+.+ |+.++|||..+.                                      ...
T Consensus       284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------------------------------------eLl  325 (636)
T KOG2394|consen  284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------------------------------------ELL  325 (636)
T ss_pred             ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH--------------------------------------HHH
Confidence            11112245789999999999999998 558999998873                                      223


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCC-----------------
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH-----------------  396 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----------------  396 (458)
                      ..++..-..  ..|++| ||||+||++|++|--|.||.+...+.+..=++|...|+.++|.|-                 
T Consensus       326 g~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~  402 (636)
T KOG2394|consen  326 GVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTF  402 (636)
T ss_pred             HHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccc
Confidence            333333332  789999 999999999999999999999999999999999999999999830                 


Q ss_pred             ------------------C-------------CeEEEeecCCcEEEecCCccccc
Q 012712          397 ------------------S-------------TVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       397 ------------------~-------------~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                                        +             -.+.+.+.|..+.+||+....+.
T Consensus       403 ~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  403 SDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             cchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence                              1             14678889999999999876443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=6.7e-15  Score=132.87  Aligned_cols=235  Identities=12%  Similarity=0.126  Sum_probs=151.5

Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccccceeeeeccccccceEEEEE
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  158 (458)
                      ...|.++|.+.... ..+ ..|...+...+|+|  ||+.|+..+.   +..|.+||+.+++...   +..+.+.+...+|
T Consensus       181 ~~~l~~~d~dg~~~-~~l-t~~~~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~  253 (435)
T PRK05137        181 IKRLAIMDQDGANV-RYL-TDGSSLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRF  253 (435)
T ss_pred             ceEEEEECCCCCCc-EEE-ecCCCCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEE
Confidence            34789999865443 444 46788999999999  9999888764   4689999998775432   4445567778999


Q ss_pred             cCCCCeEEEEecCCCe--EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCC--eEEEEec
Q 012712          159 EPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE--YTRLYDI  233 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~  233 (458)
                      +|+|..++++.+.++.  |++||+++++......           +........|+|| ++.++..+ .+|  .|+++|+
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-----------~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-----------SPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCceEEccC-----------CCCccCceeEcCC-CCEEEEEECCCCCCeEEEEEC
Confidence            9999766667776665  7777988776533221           1223456899998 55655544 343  5778887


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEEEEccCCCCCCCCCCCCccccccc
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      ..++..               .+. .....+....|+|+|+.|+....  +  .|.+|++..+.                
T Consensus       322 ~g~~~~---------------~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----------------  369 (435)
T PRK05137        322 DGSNPR---------------RIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----------------  369 (435)
T ss_pred             CCCCeE---------------Eee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----------------
Confidence            654321               111 12344567889999999887652  2  47788865421                


Q ss_pred             cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC------CeEEEEEecCCeEEEEeec
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC------GRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~  383 (458)
                                             .+.+....   .+....| +|||++|+..+.+      ..++++|+..++. ..+. 
T Consensus       370 -----------------------~~~lt~~~---~~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-  420 (435)
T PRK05137        370 -----------------------ERILTSGF---LVEGPTW-APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-  420 (435)
T ss_pred             -----------------------eEeccCCC---CCCCCeE-CCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-
Confidence                                   11111111   1445667 9999998865443      3678888855544 4444 


Q ss_pred             CCceeeEEEecCC
Q 012712          384 DRHVVNCIEPHPH  396 (458)
Q Consensus       384 ~~~~v~~~~~s~~  396 (458)
                      ..+.+...+|+|-
T Consensus       421 ~~~~~~~p~Wsp~  433 (435)
T PRK05137        421 TPGDASDPAWSPL  433 (435)
T ss_pred             CCCCccCcccCCC
Confidence            2445677788873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=4.4e-15  Score=133.33  Aligned_cols=235  Identities=11%  Similarity=0.083  Sum_probs=146.9

Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      ..|.++|.+ +.....+ ..+...+.+.+|+|  |++.|+..+.+   ..|.+||+.+++...   +....+.....+|+
T Consensus       176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~S  248 (427)
T PRK02889        176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWS  248 (427)
T ss_pred             cEEEEECCC-CCCceEe-ccCCCCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEEC
Confidence            467888874 3333444 46778899999999  99999877643   359999998776543   22233456689999


Q ss_pred             CCCCeEEEEecCCCeEEEEe--CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE-EecCCCeEEEEecC--
Q 012712          160 PGSPHVFYTCGEDGLVQHFD--LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEYTRLYDIR--  234 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~i~d~~--  234 (458)
                      |++..++++.+.++...+|.  +..+.. ..+..          +........|+|| ++.++ +...+|...+|.+.  
T Consensus       249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~----------~~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        249 PDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ----------SSGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCCc-EECCC----------CCCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEECC
Confidence            99966666777888766664  444432 22211          1112456789998 45555 44445666666654  


Q ss_pred             CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-C---cEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E---FIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      +++.               ..+. .........+|+|+|++|+..+. +   .|++||+.++..                
T Consensus       317 ~g~~---------------~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----------------  364 (427)
T PRK02889        317 GGAA---------------QRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----------------  364 (427)
T ss_pred             CCce---------------EEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----------------
Confidence            3221               0011 01122345789999999887653 2   499999876421                


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC---eEEEEEecCCeEEEEeecCCce
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRHV  387 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~  387 (458)
                                             ..+.....   .....| +|||++|+.++.++   .+++.++ +++....+..+.+.
T Consensus       365 -----------------------~~lt~~~~---~~~p~~-spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~  416 (427)
T PRK02889        365 -----------------------TALTDTTR---DESPSF-APNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGD  416 (427)
T ss_pred             -----------------------EEccCCCC---ccCceE-CCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCC
Confidence                                   11111111   234566 99999998776543   3556666 56666677667777


Q ss_pred             eeEEEecCC
Q 012712          388 VNCIEPHPH  396 (458)
Q Consensus       388 v~~~~~s~~  396 (458)
                      +...+|+|-
T Consensus       417 ~~~p~wsp~  425 (427)
T PRK02889        417 VREPSWGPF  425 (427)
T ss_pred             CCCCccCCC
Confidence            888899874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.71  E-value=1.9e-15  Score=120.82  Aligned_cols=253  Identities=15%  Similarity=0.170  Sum_probs=180.2

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE-CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD-WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      +..+++.++||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+...-..+++++.+.+  +...|+.+-..|
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ng   90 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNG   90 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecc
Confidence            4456678899999999999999888899999999999995 3445544444334567889999999  999999999999


Q ss_pred             cEEEeecccc--cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          129 QVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       129 ~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      ++.-+.+...  +....+....|...+..+.|+... ..+++.+.|..+.---.+.+..+..+..           ....
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----------~~~~  158 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF-----------ETPA  158 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe-----------eccC
Confidence            9988876543  222233466799999999998776 6788899887765555555554433321           1112


Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEE
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIY  285 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~  285 (458)
                      .++.+.-   .+...|...|.|..-.+.....             .+.....+|...+.+++|.|..++|.++..+ .+.
T Consensus       159 t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~-------------~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi  222 (404)
T KOG1409|consen  159 SALQFDA---LYAFVGDHSGQITMLKLEQNGC-------------QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI  222 (404)
T ss_pred             CCCceee---EEEEecccccceEEEEEeecCC-------------ceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence            2222221   1455566666666655543321             2345567789999999999999999999866 799


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG  365 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg  365 (458)
                      +||+...                                     ......+.+|...  +..+.+ -+.-+.+.+++.||
T Consensus       223 ~wdigg~-------------------------------------~g~~~el~gh~~k--V~~l~~-~~~t~~l~S~~edg  262 (404)
T KOG1409|consen  223 MWDIGGR-------------------------------------KGTAYELQGHNDK--VQALSY-AQHTRQLISCGEDG  262 (404)
T ss_pred             EEeccCC-------------------------------------cceeeeeccchhh--hhhhhh-hhhheeeeeccCCC
Confidence            9998753                                     2234456667664  677766 66778899999999


Q ss_pred             eEEEEEe
Q 012712          366 RIFIWKK  372 (458)
Q Consensus       366 ~i~iwd~  372 (458)
                      .|.+|++
T Consensus       263 ~i~~w~m  269 (404)
T KOG1409|consen  263 GIVVWNM  269 (404)
T ss_pred             eEEEEec
Confidence            9999998

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.70  E-value=7e-14  Score=117.87  Aligned_cols=323  Identities=17%  Similarity=0.163  Sum_probs=209.6

Q ss_pred             eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--------
Q 012712           57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--------  128 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--------  128 (458)
                      +..-.-++..++|||.|.+|++....+ |.+|.-.....+..+  .| ..|..+.|+|  .+++|.+-+..+        
T Consensus        28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~-~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~  101 (561)
T COG5354          28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF--RH-PDVKYLDFSP--NEKYLVTWSREPIIEPEIEI  101 (561)
T ss_pred             ccccCcchhheeecCcchheehhhccc-eEEccccchhheeee--ec-CCceecccCc--ccceeeeeccCCccChhhcc
Confidence            333556889999999999999887765 999998877765555  23 5699999999  999999866543        


Q ss_pred             -------cEEEeecccccceeeeeccccccceE-EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc
Q 012712          129 -------QVRHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY  200 (458)
Q Consensus       129 -------~i~vw~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  200 (458)
                             .+.+||+.++..+..........-.. -+.|+-+. .+++-. ....++++++ ++.... ......      
T Consensus       102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~-~p~~~l------  171 (561)
T COG5354         102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEE-HPFKNL------  171 (561)
T ss_pred             CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCcccc-Cchhhc------
Confidence                   48999999888766532222221133 57788776 333322 3356899997 433221 111111      


Q ss_pred             eeecceEEEEECCC-CCcEEEE-----ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712          201 MTVVNLNAIAIDPR-NANLFAV-----AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE  274 (458)
Q Consensus       201 ~~~~~v~~~~~~p~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  274 (458)
                       ....+...+|+|. ++..|+.     .+..+.+++|.+..+.....            ..+.   +..-..+.|.+.|+
T Consensus       172 -r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t------------k~lf---k~~~~qLkW~~~g~  235 (561)
T COG5354         172 -RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT------------KNLF---KVSGVQLKWQVLGK  235 (561)
T ss_pred             -cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee------------eeeE---eecccEEEEecCCc
Confidence             1235788889986 2233333     45678899998875543221            1111   22335688999998


Q ss_pred             EEEEec------------CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce
Q 012712          275 LLVSYN------------DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC  342 (458)
Q Consensus       275 ~l~~~~------------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (458)
                      +|++-.            +.+++|+++...                                       .+.....-.+ 
T Consensus       236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---------------------------------------~i~V~~~~~~-  275 (561)
T COG5354         236 YLLVLVMTHTKSNKSYFGESNLYLLRITER---------------------------------------SIPVEKDLKD-  275 (561)
T ss_pred             eEEEEEEEeeecccceeccceEEEEeeccc---------------------------------------ccceeccccc-
Confidence            776421            234777777631                                       1111112233 


Q ss_pred             eeeeEEEEecCCCcEEEE--ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcc
Q 012712          343 VTVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAA  417 (458)
Q Consensus       343 ~~i~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~  417 (458)
                       .|...+| .|.++.+++  |-.+..+.++|+... ....  ...+.-+.+.|+|.+++++.++-|   |.+-+|+..+.
T Consensus       276 -pVhdf~W-~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         276 -PVHDFTW-EPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             -cceeeee-cccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence             3888998 999887765  457788999998544 3333  344556788999999999998766   67999998876


Q ss_pred             cccccccccccEEEEEEecCCcEEEeee------cCCceEEEEEe
Q 012712          418 DRATLPTNIEQVCFSIYSADYWWSKSQN------FSCSILLFEWL  456 (458)
Q Consensus       418 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~------~d~~i~~w~~~  456 (458)
                      ....-.-......-+.|||||.++.+..      .|..|.||++-
T Consensus       351 f~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         351 FKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             eEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            4433122222345567999998876643      57889999973

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.70  E-value=5.8e-14  Score=118.33  Aligned_cols=336  Identities=12%  Similarity=0.129  Sum_probs=217.0

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.+||.|++|++....+ |.+|.-..+..+.+                     +.  ...|..+.|||.++||.|=+..
T Consensus        37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~---------------------~~--~~~V~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          37 YVSESPLGTYLFSEHAAG-VECWGGPSKAKLVR---------------------FR--HPDVKYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             heeecCcchheehhhccc-eEEccccchhheee---------------------ee--cCCceecccCcccceeeeeccC
Confidence            467899999999888554 88999886654422                     22  2468899999999999985543


Q ss_pred             ---------------CeEEEEECCCcceeeeeccCCCcc--ee-EEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712           83 ---------------RRVILWDWKTERVKLSFHSGHNDN--VF-QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK  144 (458)
Q Consensus        83 ---------------~~i~iwd~~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  144 (458)
                                     ..+.+||..++..+..+. .-..+  .+ -+.|+-  +..++|-.. ...+.++++ ++.... .
T Consensus        93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~--~D~y~ARvv-~~sl~i~e~-t~n~~~-~  166 (561)
T COG5354          93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSI--DDKYVARVV-GSSLYIHEI-TDNIEE-H  166 (561)
T ss_pred             CccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeee--cchhhhhhc-cCeEEEEec-CCcccc-C
Confidence                           248999999999888873 33333  33 678887  777776543 346899997 332211 1


Q ss_pred             eccc-cccceEEEEEcCCCC-eEEEE-----ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712          145 LLGK-HQGRAHKLAIEPGSP-HVFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       145 ~~~~-~~~~v~~~~~~~~~~-~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      .+.. ....+....|+|.+. ..|+.     ....+.+++|.+..+..+..-...+.          .-..+.|.+. ++
T Consensus       167 p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~----------~~~qLkW~~~-g~  235 (561)
T COG5354         167 PFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV----------SGVQLKWQVL-GK  235 (561)
T ss_pred             chhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee----------cccEEEEecC-Cc
Confidence            1111 135678888999742 22332     35678899998886655443332211          1235677776 44


Q ss_pred             EEEEec-----------CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--C-Cc
Q 012712          218 LFAVAG-----------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D-EF  283 (458)
Q Consensus       218 ~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~-~~  283 (458)
                      ++++--           ....+++++++....                .......++|...+|.|.++.+++.+  . -.
T Consensus       236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i----------------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~  299 (561)
T COG5354         236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI----------------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS  299 (561)
T ss_pred             eEEEEEEEeeecccceeccceEEEEeeccccc----------------ceeccccccceeeeecccCCceeEEecccccc
Confidence            443311           124577888774431                11113467899999999988776655  3 36


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~  363 (458)
                      +.++|++..                                       ....+....    -+.+.| +|.+++++.++-
T Consensus       300 ~s~~~lr~N---------------------------------------l~~~~Pe~~----rNT~~f-sp~~r~il~agF  335 (561)
T COG5354         300 VSVFDLRGN---------------------------------------LRFYFPEQK----RNTIFF-SPHERYILFAGF  335 (561)
T ss_pred             eeecccccc---------------------------------------eEEecCCcc----cccccc-cCcccEEEEecC
Confidence            889988763                                       111111111    233445 999999998776


Q ss_pred             C---CeEEEEEecCCeEEE-EeecCCceeeEEEecCCCCeEEEee------cCCcEEEecCCcccccccccccccEEEEE
Q 012712          364 C---GRIFIWKKKGGELIR-VIEADRHVVNCIEPHPHSTVLASSG------IESDIKILTPNAADRATLPTNIEQVCFSI  433 (458)
Q Consensus       364 d---g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~v~~~~  433 (458)
                      |   |.+.+||......+. .+.+.+  ..-+.|+||++++.+..      .|..|+||++...+..       ..+.+.
T Consensus       336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-------el~~~~  406 (561)
T COG5354         336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-------ELTNIT  406 (561)
T ss_pred             CccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-------hhhhcc
Confidence            5   789999987654443 565543  45678999999887653      3788999999876543       455677


Q ss_pred             EecCCcEEEeeecCC
Q 012712          434 YSADYWWSKSQNFSC  448 (458)
Q Consensus       434 ~s~d~~~l~s~~~d~  448 (458)
                      |.|.|++..+.+.+.
T Consensus       407 W~p~~~~~ttsSs~~  421 (561)
T COG5354         407 WDPSGQYVTTSSSCP  421 (561)
T ss_pred             ccCCcccceeeccCC
Confidence            888777765555443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=1.3e-13  Score=120.25  Aligned_cols=292  Identities=13%  Similarity=0.175  Sum_probs=171.3

Q ss_pred             CeEEEEEC--CCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----CCcEEEeecccc-cce-eeeeccccccceE
Q 012712           83 RRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILER-GGV-ETKLLGKHQGRAH  154 (458)
Q Consensus        83 ~~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----dg~i~vw~~~~~-~~~-~~~~~~~~~~~v~  154 (458)
                      +.|.+|++  ++++....-..........++++|  ++++|.+...    ++.|..|.+... ..+ .............
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~   90 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC   90 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence            68988888  344332211112345567789999  9999988876    578999998765 222 2111222334556


Q ss_pred             EEEEcCCCCeEEEEecCCCeEEEEeCCCC-Cccceeeecc---cCCCCcceeecceEEEEECCCCCcEEEE-ecCCCeEE
Q 012712          155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRP---IDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDEYTR  229 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~  229 (458)
                      .++++|++..++++.-.+|.|.++++... ..........   ..............++.++|++ +++++ .-....|+
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~  169 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVY  169 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEE
Confidence            79999999666666667899999999874 3322211110   0000001123356789999984 55554 44556799


Q ss_pred             EEecCCCc--cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccc
Q 012712          230 LYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       230 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      +|++....  +..            ............+.++|+|+++++....  .+.|.+|++........        
T Consensus       170 ~~~~~~~~~~l~~------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--------  229 (345)
T PF10282_consen  170 VYDIDDDTGKLTP------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--------  229 (345)
T ss_dssp             EEEE-TTS-TEEE------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--------
T ss_pred             EEEEeCCCceEEE------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--------
Confidence            99997654  110            0111122345678999999999887766  44799998873211000        


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEec--CC--eEEE
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK--GG--ELIR  379 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~  379 (458)
                                             ..+....+. +.........+++ +|||++|+++. ..+.|.+|++.  ++  +.+.
T Consensus       230 -----------------------~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~  285 (345)
T PF10282_consen  230 -----------------------EIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ  285 (345)
T ss_dssp             -----------------------EEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred             -----------------------EEEEeeeccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence                                   000011110 0111112567777 99999988755 45789999993  23  3344


Q ss_pred             EeecCCceeeEEEecCCCCeEEEee-cCCcEEEecCC--cccccc
Q 012712          380 VIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN--AADRAT  421 (458)
Q Consensus       380 ~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~--~~~~~~  421 (458)
                      .+.........++++|+|++|+++. .++.|.+|+++  ++.+..
T Consensus       286 ~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  286 TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            4444445589999999999998876 56789999764  555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=2.4e-15  Score=118.46  Aligned_cols=108  Identities=14%  Similarity=0.202  Sum_probs=88.3

Q ss_pred             eeeEEEEecCCCcEEEE--ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCccc
Q 012712          344 TVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAAD  418 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~  418 (458)
                      .|.+++| +|+|+.+|+  |..++.|.+||++ ++.+..+.  ...++.+.|+|+|++|++++.+   |.|.+||..+.+
T Consensus        61 ~I~~~~W-sP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   61 PIHDVAW-SPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             ceEEEEE-CcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            3899999 999998754  4567899999995 67776664  4567899999999999998754   679999999877


Q ss_pred             ccccccccccEEEEEEecCCcEEEeeec------CCceEEEEEe
Q 012712          419 RATLPTNIEQVCFSIYSADYWWSKSQNF------SCSILLFEWL  456 (458)
Q Consensus       419 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~------d~~i~~w~~~  456 (458)
                      ......|. .++.++|||||+++++++.      |+.++||++.
T Consensus       137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  137 KISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            77655554 4789999999999998764      7889999974

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.9e-14  Score=122.92  Aligned_cols=280  Identities=13%  Similarity=0.129  Sum_probs=190.4

Q ss_pred             CCCCCCCe-EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC--CceEEEEEecCCCEEEEecC
Q 012712            5 SNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR--GCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         5 ~~~~~~~~-l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~   81 (458)
                      --+|||++ +|||...-.|++||+..-.+                       .|.-|.  ..|.-.-++.|-..++--..
T Consensus        58 k~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------KFERhlDae~V~feiLsDD~SK~v~L~~  114 (703)
T KOG2321|consen   58 KVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------KFERHLDAEVVDFEILSDDYSKSVFLQN  114 (703)
T ss_pred             EecCCCcEEEEecccCCceEEEEccccee-----------------------eeeecccccceeEEEeccchhhheEeec
Confidence            35899998 67788899999999983221                       234443  44555556666555666667


Q ss_pred             CCeEEEEECCCcce-eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           82 DRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        82 d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      |++|.+-.-- |.. ...+    ...-..++++.  -..-|+.++....|.-++++.+.-+..  +....+.++++..++
T Consensus       115 DR~IefHak~-G~hy~~RI----P~~GRDm~y~~--~scDly~~gsg~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~  185 (703)
T KOG2321|consen  115 DRTIEFHAKY-GRHYRTRI----PKFGRDMKYHK--PSCDLYLVGSGSEVYRLNLEQGRFLNP--FETDSGELNVVSINE  185 (703)
T ss_pred             Cceeeehhhc-Ceeeeeec----CcCCccccccC--CCccEEEeecCcceEEEEccccccccc--cccccccceeeeecC
Confidence            7887765422 221 1111    12234566665  233344444445788889988877655  555668999999999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCCccceeeeccc-CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      -. .+|++|+.+|.|..||.++...+..+..... ....+......|+++.|+.+ +-.+++|+.+|.+.|||+++.+..
T Consensus       186 ~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  186 EH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             cc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCce
Confidence            88 7899999999999999999888777654332 11222223345999999987 799999999999999999987621


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT  317 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (458)
                                    ...-.....+|..+.|.+.  +..+++.....++|||-.+++..                      
T Consensus       264 --------------~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~----------------------  307 (703)
T KOG2321|consen  264 --------------LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM----------------------  307 (703)
T ss_pred             --------------eecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce----------------------
Confidence                          1112223567899999876  45676666668999998885432                      


Q ss_pred             cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                      ..+....   .++.+|+ -|++.+++++.+++.+..|=+..
T Consensus       308 ----------------asiEpt~---~lND~C~-~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  308 ----------------ASIEPTS---DLNDFCF-VPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ----------------eeccccC---CcCceee-ecCCceEEEecCCCcceeEEccc
Confidence                            2222111   2677787 68888999999888888776654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.68  E-value=1.4e-12  Score=113.86  Aligned_cols=279  Identities=14%  Similarity=0.143  Sum_probs=165.4

Q ss_pred             CceEEEEEecCCCEEEEecC----CCeEEEEECCCc--ce--eeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEE
Q 012712           62 GCVNTVSFNTDGDILISGSD----DRRVILWDWKTE--RV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRH  132 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~v  132 (458)
                      ..-..++++|++++|.+...    ++.|..|++...  +.  +.+. .........++++|  ++++|+++.. +|.|.+
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~--~g~~l~vany~~g~v~v  113 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDP--DGRFLYVANYGGGSVSV  113 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECT--TSSEEEEEETTTTEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEec--CCCEEEEEEccCCeEEE
Confidence            44567889999999988866    579999988764  22  2222 11334556899999  9999988875 899999


Q ss_pred             eecccccceeee--ecc----------ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCc
Q 012712          133 AQILERGGVETK--LLG----------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRN  199 (458)
Q Consensus       133 w~~~~~~~~~~~--~~~----------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~  199 (458)
                      +++.....+...  .+.          .......++.++|+++.++++.-....|.+|++..... +.........    
T Consensus       114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~----  189 (345)
T PF10282_consen  114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP----  189 (345)
T ss_dssp             EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS----
T ss_pred             EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc----
Confidence            999875433221  110          12245688999999965555554556899999977652 2111111111    


Q ss_pred             ceeecceEEEEECCCCCcEEEEecCCCeEEEEecC--CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV  277 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (458)
                        .......++|+|++....++...++.|.++++.  .++.......       ...............++++|||++|.
T Consensus       190 --~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~i~ispdg~~ly  260 (345)
T PF10282_consen  190 --PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI-------STLPEGFTGENAPAEIAISPDGRFLY  260 (345)
T ss_dssp             --TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-------ESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred             --cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe-------eeccccccccCCceeEEEecCCCEEE
Confidence              223468899999855555666778899999988  2221110000       00000001123678899999999988


Q ss_pred             Eec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712          278 SYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC  355 (458)
Q Consensus       278 ~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~  355 (458)
                      ++.  .+.|.+|+++.....                                  ...+..+.....  ..+.+++ +|+|
T Consensus       261 vsnr~~~sI~vf~~d~~~g~----------------------------------l~~~~~~~~~G~--~Pr~~~~-s~~g  303 (345)
T PF10282_consen  261 VSNRGSNSISVFDLDPATGT----------------------------------LTLVQTVPTGGK--FPRHFAF-SPDG  303 (345)
T ss_dssp             EEECTTTEEEEEEECTTTTT----------------------------------EEEEEEEEESSS--SEEEEEE--TTS
T ss_pred             EEeccCCEEEEEEEecCCCc----------------------------------eEEEEEEeCCCC--CccEEEE-eCCC
Confidence            776  447999998532100                                  111222221111  2577888 9999


Q ss_pred             cEEEEec-CCCeEEEEEec--CCeEEEEee-cCCceeeEEEe
Q 012712          356 EYVVSGS-DCGRIFIWKKK--GGELIRVIE-ADRHVVNCIEP  393 (458)
Q Consensus       356 ~~l~~~~-~dg~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~  393 (458)
                      ++|+++. .++.|.+|++.  +|.+...-. ..-....|+.|
T Consensus       304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            9999876 45789999874  666544332 12234556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=1e-16  Score=132.95  Aligned_cols=191  Identities=11%  Similarity=0.195  Sum_probs=166.4

Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcE
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI  284 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i  284 (458)
                      ..+.+.++.+ |.+++.|+..|.|..+|..+.++...+.                -...|..+.|..+.+++|++....+
T Consensus       131 GPY~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------v~Etv~Dv~~LHneq~~AVAQK~y~  193 (545)
T KOG1272|consen  131 GPYHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEIN----------------VMETVRDVTFLHNEQFFAVAQKKYV  193 (545)
T ss_pred             CCeeeeecCC-ccEEEecCCccceeeeecccceeeeeee----------------hhhhhhhhhhhcchHHHHhhhhceE
Confidence            4577888886 7899999999999999999987643322                2456888999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      ++||-..                                       ..+..++.+..   +..+.| -|..-+|++++..
T Consensus       194 yvYD~~G---------------------------------------tElHClk~~~~---v~rLeF-LPyHfLL~~~~~~  230 (545)
T KOG1272|consen  194 YVYDNNG---------------------------------------TELHCLKRHIR---VARLEF-LPYHFLLVAASEA  230 (545)
T ss_pred             EEecCCC---------------------------------------cEEeehhhcCc---hhhhcc-cchhheeeecccC
Confidence            9999653                                       34455555554   788888 8988889999999


Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEe
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKS  443 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s  443 (458)
                      |.++--|+.+|+.+..+....+.+..|+-+|-+..+-+|...|+|.+|++...+.+ .+..|.++|.++++.++|.|+||
T Consensus       231 G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaT  310 (545)
T KOG1272|consen  231 GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMAT  310 (545)
T ss_pred             CceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEee
Confidence            99999999999999999988889999999999999999999999999999988766 88999999999999999999999


Q ss_pred             eecCCceEEEEE
Q 012712          444 QNFSCSILLFEW  455 (458)
Q Consensus       444 ~~~d~~i~~w~~  455 (458)
                      .+.|..++|||.
T Consensus       311 tG~Dr~~kIWDl  322 (545)
T KOG1272|consen  311 TGLDRKVKIWDL  322 (545)
T ss_pred             cccccceeEeee
Confidence            999999999996

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.67  E-value=6.1e-13  Score=111.41  Aligned_cols=223  Identities=13%  Similarity=0.129  Sum_probs=148.5

Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC-CCCcceeecceEEEE-ECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      +.||..+++.  ..|.|.+||..+.+..+.--..+.. ..+......+..-+. |++-++.+++..+. |...+.+...+
T Consensus       275 nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         275 NSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             CCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            3455444443  3477999998876543321111111 000000111111111 45555778887775 56666665443


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-cEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      -                 .+.-++.+.|.-..+.-+++-++.+. ++ .+-+||..+++                     
T Consensus       352 ~-----------------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---------------------  393 (668)
T COG4946         352 Y-----------------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---------------------  393 (668)
T ss_pred             e-----------------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---------------------
Confidence            2                 12223456677777776666666666 33 79999998742                     


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEec
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH  394 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  394 (458)
                                        .+.+...-+  .|.++.. +|+|++++.+.....+.+.|+++++....-+...+-|+.++||
T Consensus       394 ------------------~kr~e~~lg--~I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~  452 (668)
T COG4946         394 ------------------VKRIEKDLG--NIEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH  452 (668)
T ss_pred             ------------------EEEeeCCcc--ceEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc
Confidence                              233333333  3888998 9999999999999999999999998766556666789999999


Q ss_pred             CCCCeEEEeecCC----cEEEecCCcccccccccccccEEEEEEecCCcEEEe
Q 012712          395 PHSTVLASSGIES----DIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKS  443 (458)
Q Consensus       395 ~~~~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  443 (458)
                      |+++++|.+--+|    .|+++|..+++...+......-.+.+|.|||++|..
T Consensus       453 ~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         453 PNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             CCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence            9999999886665    689999999988877777777788999999988754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.65  E-value=6.8e-13  Score=121.54  Aligned_cols=148  Identities=22%  Similarity=0.329  Sum_probs=123.0

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV   85 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   85 (458)
                      ++++.-++++|+--+.|.+|+...-+..                     ..+.||.+.|.++.++.||.++++.|.|+++
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsi  199 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKP---------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSI  199 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCc---------------------ceecccCCceEEEEEccCCcEEEEEecCcce
Confidence            4566677899999999999998822211                     1578999999999999999999999999999


Q ss_pred             EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc-cceEEEEEcCCCCe
Q 012712           86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPH  164 (458)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~  164 (458)
                      ++|++++.+......-+|...|..++|.|  +  .+++++.|.+.++|+.... .+.  .+.+|. ..+..++..++. .
T Consensus       200 RlW~i~s~~~~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctcrvW~~~~~-~l~--~y~~h~g~~iw~~~~~~~~-~  271 (967)
T KOG0974|consen  200 RLWPIDSREVLGCTGFGHSARVWACCFLP--N--RIITVGEDCTCRVWGVNGT-QLE--VYDEHSGKGIWKIAVPIGV-I  271 (967)
T ss_pred             eeeecccccccCcccccccceeEEEEecc--c--eeEEeccceEEEEEecccc-eeh--hhhhhhhcceeEEEEcCCc-e
Confidence            99999998876644468999999999998  5  9999999999999976433 232  256665 568899998887 7


Q ss_pred             EEEEecCCCeEEEEeCCC
Q 012712          165 VFYTCGEDGLVQHFDLRT  182 (458)
Q Consensus       165 ~l~s~~~dg~i~iwd~~~  182 (458)
                      .+++++.|+.+++||+..
T Consensus       272 ~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  272 IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEeeccCcchhhhhhhc
Confidence            899999999999999764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.65  E-value=1.2e-14  Score=132.73  Aligned_cols=278  Identities=12%  Similarity=0.080  Sum_probs=183.2

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccC----CCCeEEEEEcCCCcEEEeec
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF----TDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~l~s~~~dg~i~vw~~  135 (458)
                      |-+++++.++-.  ++|+.|.. ..|.+||+..+..+..+...+-..+.    .+.    -.+.+++++..-+.+..=+.
T Consensus         6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~   78 (967)
T KOG0974|consen    6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEA   78 (967)
T ss_pred             ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecch
Confidence            345555655543  56765544 56999999988765444222222222    110    02345555554444333222


Q ss_pred             ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      ....      .......+....+.... ..++..+.+..+.+||...+............      .-....-+.++++ 
T Consensus        79 ~~~~------~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------~l~~~~~~g~s~~-  144 (967)
T KOG0974|consen   79 SNQI------IERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------TLYSSLIIGDSAE-  144 (967)
T ss_pred             hhhh------hhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceE------EEEeEEEEeccCc-
Confidence            1111      11122334444445555 46777788889999998877655444322110      0001112233443 


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP  295 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~  295 (458)
                      .-++++|+.-+.|.+|+....+                                                          
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn----------------------------------------------------------  166 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDN----------------------------------------------------------  166 (967)
T ss_pred             EEEEEeccccccEEEEeccccC----------------------------------------------------------
Confidence            4556666666666666654111                                                          


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                                                          ....+.+|++.  +.++.+ +.||+++++.++|.++|+|++++.
T Consensus       167 ------------------------------------~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~  207 (967)
T KOG0974|consen  167 ------------------------------------KPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSR  207 (967)
T ss_pred             ------------------------------------CcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccc
Confidence                                                11145678875  889998 999999999999999999999998


Q ss_pred             eEEE-EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccccccc-EEEEEEecCCcEEEeeecCCceEEE
Q 012712          376 ELIR-VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQ-VCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       376 ~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      +... +.-+|+..|..+.|+|+  .++|++.|-+.++|+....++..+.+|..+ ++.++..++..+++|++.|+.+++|
T Consensus       208 ~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  208 EVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             cccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence            8776 66789999999999998  899999999999998887777777778776 9999999999999999999999999


Q ss_pred             EEec
Q 012712          454 EWLV  457 (458)
Q Consensus       454 ~~~~  457 (458)
                      +++-
T Consensus       286 ~l~~  289 (967)
T KOG0974|consen  286 DLNG  289 (967)
T ss_pred             hhhc
Confidence            9763

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=7.3e-14  Score=113.80  Aligned_cols=252  Identities=10%  Similarity=0.046  Sum_probs=175.8

Q ss_pred             CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee----eccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712          103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK----LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF  178 (458)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  178 (458)
                      -...|..++|.-....+.+..++.+..+..+.+.........    .......+|..++... +  .|++|-.+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g--~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-G--TLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC-C--EEEEEecCCcEEEE
Confidence            345677788875223345555556667777776655443321    2333455666666543 3  47888889999999


Q ss_pred             eCCCCCcc----ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC--CeEEEEecCCCccCCCccCCCCCCCcC
Q 012712          179 DLRTGAAT----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--EYTRLYDIRKYKWDGSTDFGQPADYFC  252 (458)
Q Consensus       179 d~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~  252 (458)
                      ..+.+...    ..+.           ....+..+.-+|..+.++++|+..  ..+.+||+...+.              
T Consensus       131 ~~k~~d~hss~l~~la-----------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q--------------  185 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLA-----------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ--------------  185 (412)
T ss_pred             eccCCccccccceeee-----------cCCceeeeccCCCCCceEecCchhcccceeeeeccccee--------------
Confidence            98855421    1111           122456666677667788888888  7788898876431              


Q ss_pred             CCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          253 PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       253 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                                 |....--|+.                                                           
T Consensus       186 -----------iw~aKNvpnD-----------------------------------------------------------  195 (412)
T KOG3881|consen  186 -----------IWSAKNVPND-----------------------------------------------------------  195 (412)
T ss_pred             -----------eeeccCCCCc-----------------------------------------------------------
Confidence                       1111111111                                                           


Q ss_pred             ceeecCccceeeeeEEEEecCC--CcEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeEEEecCCCCeEEEeecCCcE
Q 012712          333 PQVYKGHRNCVTVKGVNFFGPK--CEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI  409 (458)
Q Consensus       333 ~~~~~~~~~~~~i~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i  409 (458)
                         .-+-.-+.+++++.| -+.  ...+|+++.-+.+++||...+ +++..+.....+++++...|+++++++|..-+.+
T Consensus       196 ---~L~LrVPvW~tdi~F-l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  196 ---RLGLRVPVWITDIRF-LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             ---cccceeeeeecccee-cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence               111112234566666 454  678999999999999999865 5778887778899999999999999999999999


Q ss_pred             EEecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          410 KILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       410 ~iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      ..+|+..+...  .+.+..+.|+++..+|.+.+||+++-|..|+|+|.-
T Consensus       272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            99999998776  367788889999999999999999999999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=3.2e-14  Score=112.03  Aligned_cols=113  Identities=14%  Similarity=0.182  Sum_probs=86.5

Q ss_pred             ccceeEEEeCCCCcEEEEec---CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712          261 QVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK  337 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (458)
                      .++|.+++|+|+|+.++...   ...+.+||++.                                       ..+..+.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------------------------------------~~i~~~~   99 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------------------------------------KKIFSFG   99 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------------------------------------cEeEeec
Confidence            45799999999998876553   33799999863                                       2233333


Q ss_pred             CccceeeeeEEEEecCCCcEEEEecC---CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec------CCc
Q 012712          338 GHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESD  408 (458)
Q Consensus       338 ~~~~~~~i~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d~~  408 (458)
                      .  .  .+..+.| +|+|++|++++.   .|.|.+||+.+.+.+.+.. |. .++.++|+|||++|+++..      |+.
T Consensus       100 ~--~--~~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng  172 (194)
T PF08662_consen  100 T--Q--PRNTISW-SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNG  172 (194)
T ss_pred             C--C--CceEEEE-CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence            2  1  2567888 999999998764   4779999999888887775 33 4789999999999998864      788


Q ss_pred             EEEecCCcccc
Q 012712          409 IKILTPNAADR  419 (458)
Q Consensus       409 i~iw~~~~~~~  419 (458)
                      ++||+..+..+
T Consensus       173 ~~Iw~~~G~~l  183 (194)
T PF08662_consen  173 FKIWSFQGRLL  183 (194)
T ss_pred             EEEEEecCeEe
Confidence            99999876543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=3.4e-14  Score=113.77  Aligned_cols=260  Identities=12%  Similarity=0.191  Sum_probs=167.5

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecC------------CCceEEEEEec
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH------------RGCVNTVSFNT   71 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~s~   71 (458)
                      +-|..+|.+||||..+|.|-++.-+.....                .++....++.|            ...|..+.|.+
T Consensus        31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~----------------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~   94 (433)
T KOG1354|consen   31 VEFDHYGERLATGDKGGRVVLFEREKLYKG----------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD   94 (433)
T ss_pred             EEeecccceEeecCCCCeEEEeeccccccc----------------ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence            457889999999999999999977632210                12222333333            35689999998


Q ss_pred             CC--CEEEEecCCCeEEEEECCCcce-----------------------------------eeeeccCCCcceeEEEEcc
Q 012712           72 DG--DILISGSDDRRVILWDWKTERV-----------------------------------KLSFHSGHNDNVFQAKIMP  114 (458)
Q Consensus        72 ~~--~~l~s~~~d~~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~i~~~~~~~  114 (458)
                      ++  ..++..+.|.+|++|.+.....                                   ...+...|+--|+++.+..
T Consensus        95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns  174 (433)
T KOG1354|consen   95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS  174 (433)
T ss_pred             CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence            76  3566677899999998754321                                   1122346888899999998


Q ss_pred             CCCCeEEEEEcCCCcEEEeeccccccee-eeecc-----ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--
Q 012712          115 FTDDRSIVTCAADGQVRHAQILERGGVE-TKLLG-----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--  186 (458)
Q Consensus       115 ~~~~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--  186 (458)
                        |.+.++++. |=.|.+|+++-..... ...++     .-+.-|++..|+|...++|+-.+..|+|++-|++.....  
T Consensus       175 --D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~  251 (433)
T KOG1354|consen  175 --DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA  251 (433)
T ss_pred             --ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence              999888876 5689999986543221 11122     234568999999988788888899999999999964332  


Q ss_pred             --ceeeecccCCCCc--ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc----
Q 012712          187 --ELFTCRPIDDRRN--YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG----  258 (458)
Q Consensus       187 --~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----  258 (458)
                        +.+..+.....+.  ..-...|..+.|++. |+++++-.. -+|++||+.....        |+..+.......    
T Consensus       252 hsKlfEepedp~~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~--------pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAK--------PVETYPVHEYLRSKLC  321 (433)
T ss_pred             hhhhhccccCCcchhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCC--------cceEEeehHhHHHHHH
Confidence              1111111100000  001235788999997 788887554 4799999965431        211111111100    


Q ss_pred             -----ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCC
Q 012712          259 -----DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG  292 (458)
Q Consensus       259 -----~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~  292 (458)
                           ..-..-..++|+.++..+++|+ .+-.++|+...+
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                 0011224678999999999999 457899996654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.9e-13  Score=123.86  Aligned_cols=235  Identities=15%  Similarity=0.110  Sum_probs=143.6

Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      .|.++|...... ..  +..+...+....|+|+|..++++...+  ..|.+||+.+++......           .....
T Consensus       180 ~l~~~d~~g~~~-~~--l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-----------~~g~~  245 (430)
T PRK00178        180 TLQRSDYDGARA-VT--LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-----------FEGLN  245 (430)
T ss_pred             EEEEECCCCCCc-eE--EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-----------CCCCc
Confidence            377777754432 22  445667889999999995544444333  368999998886543221           11124


Q ss_pred             EEEEECCCCCcEEEEecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C
Q 012712          207 NAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E  282 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~  282 (458)
                      ....|+|++..++++...+|  .|+++|+.+++..                ....+........|+|||+.|+..++  +
T Consensus       246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g  309 (430)
T PRK00178        246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGG  309 (430)
T ss_pred             CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----------------EcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence            46899998544444555555  5888898876421                11112334556789999998876653  2


Q ss_pred             --cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712          283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS  360 (458)
Q Consensus       283 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~  360 (458)
                        .|+++++.++...                                    . ..+.+..    .....| +|||++|+.
T Consensus       310 ~~~iy~~d~~~g~~~------------------------------------~-lt~~~~~----~~~~~~-Spdg~~i~~  347 (430)
T PRK00178        310 KPQIYKVNVNGGRAE------------------------------------R-VTFVGNY----NARPRL-SADGKTLVM  347 (430)
T ss_pred             CceEEEEECCCCCEE------------------------------------E-eecCCCC----ccceEE-CCCCCEEEE
Confidence              4777777653210                                    0 0111111    223456 999999987


Q ss_pred             ecCC-C--eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcccccccccccccEEEEEE
Q 012712          361 GSDC-G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQVCFSIY  434 (458)
Q Consensus       361 ~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~v~~~~~  434 (458)
                      .+.+ +  .|.++|+.+++.. .+.. ........|+|||++|+..+.+   ..|.++++.......+..+.+.+...+|
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~w  425 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSW  425 (430)
T ss_pred             EEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCcc
Confidence            6543 3  5888999877643 3322 2223356899999998876543   3577777766555455555566778888


Q ss_pred             ecC
Q 012712          435 SAD  437 (458)
Q Consensus       435 s~d  437 (458)
                      ||-
T Consensus       426 s~~  428 (430)
T PRK00178        426 SPY  428 (430)
T ss_pred             CCC
Confidence            873

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=7e-13  Score=113.14  Aligned_cols=317  Identities=13%  Similarity=0.170  Sum_probs=197.7

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC-
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD-   82 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-   82 (458)
                      +.+||.|.+|+|--..| |.+|--+.=..++                     +|. |. .|.-+.|||..+||+|-+.. 
T Consensus       216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---------------------RF~-Hp-~Vq~idfSP~EkYLVT~s~~p  271 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---------------------RFY-HP-GVQFIDFSPNEKYLVTYSPEP  271 (698)
T ss_pred             EEecCCceEEEEEeccc-eeeecCccHHHHH---------------------hcc-CC-CceeeecCCccceEEEecCCc
Confidence            45899999999998776 7799766433332                     232 54 48899999999999986541 


Q ss_pred             ----------CeEEEEECCCcceeeeecc--CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712           83 ----------RRVILWDWKTERVKLSFHS--GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ  150 (458)
Q Consensus        83 ----------~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  150 (458)
                                ..++|||+.+|.....+..  .....-.-..||.  |++++|--.. ..|.|++...-..+..+.+  ..
T Consensus       272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki  346 (698)
T KOG2314|consen  272 IIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTG-NSISIYETPSFMLLDKKSL--KI  346 (698)
T ss_pred             cccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEecc-ceEEEEecCceeeeccccc--CC
Confidence                      5799999999998887743  1222223467998  9999987776 4689998766444333222  23


Q ss_pred             cceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccCCCCcceeecceE--EEEECCCCCcEEEEe-
Q 012712          151 GRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN--AIAIDPRNANLFAVA-  222 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~p~~~~~l~~~-  222 (458)
                      ..|....|+|.+ ++|+-=...     ..+.+..+.+++.+..-...            .|.  .+-|-.+ |.+|+.- 
T Consensus       347 ~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf------------nVsDckLhWQk~-gdyLcvkv  412 (698)
T KOG2314|consen  347 SGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF------------NVSDCKLHWQKS-GDYLCVKV  412 (698)
T ss_pred             ccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccce------------eeeccEEEeccC-CcEEEEEE
Confidence            568889999987 555432111     23444444444333322211            122  2344443 4555432 


Q ss_pred             ---------cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEc
Q 012712          223 ---------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQ  289 (458)
Q Consensus       223 ---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~  289 (458)
                               +.=..+.|+.++....        |      .. .-.-...|...+|.|.|..++.-+.+    ++.+|.+
T Consensus       413 dR~tK~~~~g~f~n~eIfrireKdI--------p------ve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~  477 (698)
T KOG2314|consen  413 DRHTKSKVKGQFSNLEIFRIREKDI--------P------VE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAV  477 (698)
T ss_pred             EeeccccccceEeeEEEEEeeccCC--------C------ce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEe
Confidence                     1122356666665542        1      11 11224678899999999877765532    5888888


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe---cCCCe
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG---SDCGR  366 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~---~~dg~  366 (458)
                      .+....                                  ...+..+..    ...+.+.| +|.|++++.+   +..|.
T Consensus       478 e~~~~~----------------------------------~~lVk~~dk----~~~N~vfw-sPkG~fvvva~l~s~~g~  518 (698)
T KOG2314|consen  478 ETNIKK----------------------------------PSLVKELDK----KFANTVFW-SPKGRFVVVAALVSRRGD  518 (698)
T ss_pred             ecCCCc----------------------------------hhhhhhhcc----cccceEEE-cCCCcEEEEEEecccccc
Confidence            742111                                  122333332    13567777 9999999865   45789


Q ss_pred             EEEEEecCCeEEEEe-ecCCceeeEEEecCCCCeEEEeec------CCcEEEecCCccc
Q 012712          367 IFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAAD  418 (458)
Q Consensus       367 i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~iw~~~~~~  418 (458)
                      +.++|+.-.....+- ..|. ..+.+.|.|.|+|++|++.      |.--+||+..+..
T Consensus       519 l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  519 LEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             eEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence            999998643322222 1233 4678999999999999875      5567788877653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=8.7e-13  Score=112.59  Aligned_cols=306  Identities=12%  Similarity=0.094  Sum_probs=193.9

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-----------CCcEEE
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----------DGQVRH  132 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-----------dg~i~v  132 (458)
                      =+-+.|||.|.||+|--..| |.+|--.+-..++++  .|. .|.-+.|||  ..++|+|-+.           ...++|
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp-~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHP-GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCC-CceeeecCC--ccceEEEecCCccccCcccCCCceEEE
Confidence            35689999999999998877 999987766666776  464 588999999  9999998653           257999


Q ss_pred             eecccccceeeeeccccccce-EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          133 AQILERGGVETKLLGKHQGRA-HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      ||+.+|..............+ .-..|+-|+ .+++.... ..|.+|+...-.++..-..          ....|....|
T Consensus       287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Ksl----------ki~gIr~Fsw  354 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSL----------KISGIRDFSW  354 (698)
T ss_pred             EEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccccc----------CCccccCccc
Confidence            999999876553221122222 346889888 66666655 5688998665332211111          2235788999


Q ss_pred             CCCCCcEEEEecC-----CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-----
Q 012712          212 DPRNANLFAVAGS-----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----  281 (458)
Q Consensus       212 ~p~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----  281 (458)
                      +|. +++||-=..     -..+.+-.+.+.+.+..               ..-++-.=..+.|-.+|.+|+.--+     
T Consensus       355 sP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt---------------~nlfnVsDckLhWQk~gdyLcvkvdR~tK~  418 (698)
T KOG2314|consen  355 SPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRT---------------KNLFNVSDCKLHWQKSGDYLCVKVDRHTKS  418 (698)
T ss_pred             CCC-cceEEEEcccccCCcceEEEEecCccceeee---------------ccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence            997 566653221     12234444433332111               1112222345778888998886432     


Q ss_pred             ---C---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712          282 ---E---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC  355 (458)
Q Consensus       282 ---~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~  355 (458)
                         +   .+.|+.++...                                     .++..+.-..   .|...+| .|.|
T Consensus       419 ~~~g~f~n~eIfrireKd-------------------------------------Ipve~velke---~vi~FaW-EP~g  457 (698)
T KOG2314|consen  419 KVKGQFSNLEIFRIREKD-------------------------------------IPVEVVELKE---SVIAFAW-EPHG  457 (698)
T ss_pred             cccceEeeEEEEEeeccC-------------------------------------CCceeeecch---heeeeee-ccCC
Confidence               1   24555554421                                     1112222111   3788898 9999


Q ss_pred             cEEEEecCC---CeEEEEEecC-C---eEEEEeecCCceeeEEEecCCCCeEEEe---ecCCcEEEecCCccccc--ccc
Q 012712          356 EYVVSGSDC---GRIFIWKKKG-G---ELIRVIEADRHVVNCIEPHPHSTVLASS---GIESDIKILTPNAADRA--TLP  423 (458)
Q Consensus       356 ~~l~~~~~d---g~i~iwd~~~-~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~d~~i~iw~~~~~~~~--~~~  423 (458)
                      ..+++-+.+   .++.+|.+++ .   +++..+..  ...+.+.|+|.|++++.+   |..|.+.++|..-....  ...
T Consensus       458 dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~  535 (698)
T KOG2314|consen  458 DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP  535 (698)
T ss_pred             CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc
Confidence            877754432   5788998873 2   23344432  456889999999998876   55789999998853322  333


Q ss_pred             cccccEEEEEEecCCcEEEeeecC
Q 012712          424 TNIEQVCFSIYSADYWWSKSQNFS  447 (458)
Q Consensus       424 ~~~~~v~~~~~s~d~~~l~s~~~d  447 (458)
                      . +...+.+.|.|.|+|+++++..
T Consensus       536 e-h~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  536 E-HFAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             c-ccccccceECCCCCEEEEeeeh
Confidence            3 3357889999999999987754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.8e-13  Score=123.27  Aligned_cols=233  Identities=16%  Similarity=0.114  Sum_probs=141.3

Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      .|.++|...... .  .+..+...+....|+|+|..++++...++  .|++||+.+++.......           ....
T Consensus       199 ~l~i~d~dG~~~-~--~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-----------~g~~  264 (448)
T PRK04792        199 QLMIADYDGYNE-Q--MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-----------PGIN  264 (448)
T ss_pred             EEEEEeCCCCCc-e--EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----------CCCc
Confidence            566667644332 2  24456678889999999965555444333  588899988764332211           1123


Q ss_pred             EEEEECCCCCcEEEEecCCCe--EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C
Q 012712          207 NAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E  282 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~  282 (458)
                      ...+|+||+..++++...+|.  |+++|+.+++..                ....+.......+|+|||+.|+..++  +
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g  328 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----------------RITRHRAIDTEPSWHPDGKSLIFTSERGG  328 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----------------ECccCCCCccceEECCCCCEEEEEECCCC
Confidence            467999985444455666665  777788765421                11112334567899999998877653  3


Q ss_pred             --cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee--cCccceeeeeEEEEecCCCcEE
Q 012712          283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPKCEYV  358 (458)
Q Consensus       283 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~s~~~~~l  358 (458)
                        .++++|+.++.                                       ...+  .+..    ....+| +|||++|
T Consensus       329 ~~~Iy~~dl~~g~---------------------------------------~~~Lt~~g~~----~~~~~~-SpDG~~l  364 (448)
T PRK04792        329 KPQIYRVNLASGK---------------------------------------VSRLTFEGEQ----NLGGSI-TPDGRSM  364 (448)
T ss_pred             CceEEEEECCCCC---------------------------------------EEEEecCCCC----CcCeeE-CCCCCEE
Confidence              36677765531                                       1111  1211    233566 9999998


Q ss_pred             EEecCC-C--eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC-C--cEEEecCCcccccccccccccEEEE
Q 012712          359 VSGSDC-G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-S--DIKILTPNAADRATLPTNIEQVCFS  432 (458)
Q Consensus       359 ~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~--~i~iw~~~~~~~~~~~~~~~~v~~~  432 (458)
                      +..+.+ +  .|.++|+.+++.. .+... .......|+|||++|+..+.+ +  .+.+++.+......+..+.+.+...
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p  442 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSP  442 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCC
Confidence            876543 3  5666787777543 33322 122345899999988765543 3  3777787666555566566678888


Q ss_pred             EEecC
Q 012712          433 IYSAD  437 (458)
Q Consensus       433 ~~s~d  437 (458)
                      +|||-
T Consensus       443 ~Wsp~  447 (448)
T PRK04792        443 AWSPF  447 (448)
T ss_pred             ccCCC
Confidence            89873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.62  E-value=1.9e-13  Score=123.89  Aligned_cols=232  Identities=16%  Similarity=0.142  Sum_probs=140.2

Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      .|.++|...... ..  +..+...+...+|+|++..++++...+  ..|++||+.+++......           ....+
T Consensus       171 ~l~~~d~~g~~~-~~--l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-----------~~~~~  236 (417)
T TIGR02800       171 ELQVADYDGANP-QT--ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-----------FPGMN  236 (417)
T ss_pred             eEEEEcCCCCCC-EE--eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-----------CCCCc
Confidence            577777753332 22  445666788999999995444433222  479999998876433222           11235


Q ss_pred             EEEEECCCCCcEEEEecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C
Q 012712          207 NAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E  282 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~  282 (458)
                      .+++|+|++..++++.+.++  .|++||+.+++...                ...+........|+|+|+.|+..++  +
T Consensus       237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----------------l~~~~~~~~~~~~s~dg~~l~~~s~~~g  300 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----------------LTNGPGIDTEPSWSPDGKSIAFTSDRGG  300 (417)
T ss_pred             cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----------------CCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence            56899998544445555544  58888887654211                1112223446789999998876653  2


Q ss_pred             --cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712          283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS  360 (458)
Q Consensus       283 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~  360 (458)
                        .|+++++.++.                                       ...+..+..  ......| +|+|++++.
T Consensus       301 ~~~iy~~d~~~~~---------------------------------------~~~l~~~~~--~~~~~~~-spdg~~i~~  338 (417)
T TIGR02800       301 SPQIYMMDADGGE---------------------------------------VRRLTFRGG--YNASPSW-SPDGDLIAF  338 (417)
T ss_pred             CceEEEEECCCCC---------------------------------------EEEeecCCC--CccCeEE-CCCCCEEEE
Confidence              47777765421                                       111221111  2455677 999999998


Q ss_pred             ecCCC---eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEecCCcccccccccccccEEEEEE
Q 012712          361 GSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAADRATLPTNIEQVCFSIY  434 (458)
Q Consensus       361 ~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~v~~~~~  434 (458)
                      ++.++   .|.+||+.++.. ..+... .......|+|||++|+..+.++   .+.+.+........+..+.+.+..++|
T Consensus       339 ~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       339 VHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             EEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCCCcCCCCC
Confidence            87765   789999877543 333322 2345668999999888776654   456666555444444444444555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=3.2e-13  Score=120.63  Aligned_cols=244  Identities=13%  Similarity=0.091  Sum_probs=144.6

Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCe--EEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH--VFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      ..|.+.|........   +.........-.|+|||..  ++++...+|  .|.+.++.+++.......           .
T Consensus       165 ~~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-----------~  230 (428)
T PRK01029        165 GELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-----------Q  230 (428)
T ss_pred             ceEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-----------C
Confidence            356666665443322   4444556677899999854  233444443  578888888765443321           1


Q ss_pred             cceEEEEECCCCCcEEEEecCCC----eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                      ......+|+||+..++++...+|    .+..|++..+...            .+..+...........+|+|||+.|+..
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~  298 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG------------KPRRLLNEAFGTQGNPSFSPDGTRLVFV  298 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC------------cceEeecCCCCCcCCeEECCCCCEEEEE
Confidence            13356799999544444443333    3444666543100            0111222222334567999999988876


Q ss_pred             c--CCc--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712          280 N--DEF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC  355 (458)
Q Consensus       280 ~--~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~  355 (458)
                      +  ++.  ++++++...                                     ......+..+..  .+....| +|||
T Consensus       299 s~~~g~~~ly~~~~~~~-------------------------------------g~~~~~lt~~~~--~~~~p~w-SPDG  338 (428)
T PRK01029        299 SNKDGRPRIYIMQIDPE-------------------------------------GQSPRLLTKKYR--NSSCPAW-SPDG  338 (428)
T ss_pred             ECCCCCceEEEEECccc-------------------------------------ccceEEeccCCC--CccceeE-CCCC
Confidence            6  333  444444321                                     011122222222  2456677 9999


Q ss_pred             cEEEEecCC---CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec---CCcEEEecCCcccccccccccccE
Q 012712          356 EYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---ESDIKILTPNAADRATLPTNIEQV  429 (458)
Q Consensus       356 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~v  429 (458)
                      ++|+..+.+   ..|++||+.+++... +......+....|+|||+.|+....   ...|.++++.+++...+....+.+
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~  417 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEK  417 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcc
Confidence            998866543   479999998887643 3333345678999999998875432   357889999888777776666678


Q ss_pred             EEEEEecCC
Q 012712          430 CFSIYSADY  438 (458)
Q Consensus       430 ~~~~~s~d~  438 (458)
                      ...+|||-.
T Consensus       418 ~~p~Ws~~~  426 (428)
T PRK01029        418 RFPSWGAFP  426 (428)
T ss_pred             cCceecCCC
Confidence            888998854

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.61  E-value=4e-13  Score=121.77  Aligned_cols=233  Identities=12%  Similarity=0.092  Sum_probs=143.4

Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEE
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  158 (458)
                      ...|.++|...... ..+ ..+...+...+|+|  |+++|+.+..+   ..|.+|++.+++...   +..+...+.+++|
T Consensus       169 ~~~l~~~d~~g~~~-~~l-~~~~~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~  241 (417)
T TIGR02800       169 RYELQVADYDGANP-QTI-TRSREPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAF  241 (417)
T ss_pred             cceEEEEcCCCCCC-EEe-ecCCCceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEE
Confidence            34688888764443 334 35666788999999  99999887653   479999998765433   2334455677899


Q ss_pred             cCCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE-ecCCC--eEEEEec
Q 012712          159 EPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDE--YTRLYDI  233 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg--~i~i~d~  233 (458)
                      +|++..++++.+.++  .|++||+.++.......           +........|+|+ +..|+. ...++  .|+++|+
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-----------GPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCEEECCC-----------CCCCCCCEEECCC-CCEEEEEECCCCCceEEEEEC
Confidence            999966666666554  58888988775433221           1112345689998 455554 43343  5777777


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEccCCCCCCCCCCCCccccccc
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      .+.+..                ....+......+.|+|+|++++....+    .|.+||+.++..               
T Consensus       310 ~~~~~~----------------~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---------------  358 (417)
T TIGR02800       310 DGGEVR----------------RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---------------  358 (417)
T ss_pred             CCCCEE----------------EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---------------
Confidence            654321                111123456678999999988877633    588888765311               


Q ss_pred             cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC---eEEEEEecCCeEEEEeecCCc
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRH  386 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~  386 (458)
                                              ..+.....   .....| +|||++|+..+.++   .+++.+. +++....+..+.+
T Consensus       359 ------------------------~~l~~~~~---~~~p~~-spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g  409 (417)
T TIGR02800       359 ------------------------RVLTDTGL---DESPSF-APNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNG  409 (417)
T ss_pred             ------------------------EEccCCCC---CCCceE-CCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCC
Confidence                                    11111111   223456 99999888776653   4555554 4555555554444


Q ss_pred             eeeEEEe
Q 012712          387 VVNCIEP  393 (458)
Q Consensus       387 ~v~~~~~  393 (458)
                      .+..++|
T Consensus       410 ~~~~~~w  416 (417)
T TIGR02800       410 DVREPAW  416 (417)
T ss_pred             CcCCCCC
Confidence            5555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.60  E-value=2.7e-11  Score=102.80  Aligned_cols=273  Identities=12%  Similarity=0.065  Sum_probs=167.6

Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----------CCcEEEeecccccceeeeecccc---
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGKH---  149 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------dg~i~vw~~~~~~~~~~~~~~~~---  149 (458)
                      ++|.+.|.++++.+..+..+....  .+ ++|  |++.|+.+..          +..|.+||..+.+......+..-   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF  101 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence            789999999999888875444333  34 899  9988877665          78999999999888766443221   


Q ss_pred             --ccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712          150 --QGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE  226 (458)
Q Consensus       150 --~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  226 (458)
                        ......++++|+|+.++++--. +..|.+.|+.+++.+..+....           ...-...+++ ..+  +-+.||
T Consensus       102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----------~~~vy~t~e~-~~~--~~~~Dg  167 (352)
T TIGR02658       102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----------CYHIFPTAND-TFF--MHCRDG  167 (352)
T ss_pred             hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----------CcEEEEecCC-ccE--EEeecC
Confidence              2234478999999544444434 7899999999999887776421           1111112221 111  222344


Q ss_pred             eEEEEecCCCccCCCccCCCCCCCcCCCccccc-----cccceeEEEeCC-CCcEEEEecCCcEEEEEccCCCCCCCCCC
Q 012712          227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-----EQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPS  300 (458)
Q Consensus       227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~~~i~i~~~~~~~~~~~~~~  300 (458)
                      ......+........          ....+...     ...+    .|.+ +|+++....++.|++.|+........   
T Consensus       168 ~~~~v~~d~~g~~~~----------~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~---  230 (352)
T TIGR02658       168 SLAKVGYGTKGNPKI----------KPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFL---  230 (352)
T ss_pred             ceEEEEecCCCceEE----------eeeeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceec---
Confidence            333332222111000          00000000     0111    3455 88888877789999999755321111   


Q ss_pred             CCccccccccccCCCCccccCCCCCCcccccCceeecC-----ccceeeeeEEEEecCCCcEEEEec----------CCC
Q 012712          301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-----HRNCVTVKGVNFFGPKCEYVVSGS----------DCG  365 (458)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~s~~~~~l~~~~----------~dg  365 (458)
                                                    .....+..     .-.+.....+++ +|+++.++...          ..+
T Consensus       231 ------------------------------~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~  279 (352)
T TIGR02658       231 ------------------------------PAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASR  279 (352)
T ss_pred             ------------------------------ceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCC
Confidence                                          00111100     001111334777 99999888742          225


Q ss_pred             eEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEee-cCCcEEEecCCcccccccc
Q 012712          366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRATLP  423 (458)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~iw~~~~~~~~~~~  423 (458)
                      .|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+++.....
T Consensus       280 ~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       280 FLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            899999999999998874 34689999999999 777665 5788999999988766443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=5.1e-13  Score=120.39  Aligned_cols=236  Identities=14%  Similarity=0.110  Sum_probs=143.6

Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CC--cEEEeecccccceeeeeccccccceEEEEEc
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DG--QVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      ..|.++|.+.... ..+ ..+...+....|+|  ||+.|+..+. ++  .|.+||+.+++....   ..........+|+
T Consensus       198 ~~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~l---t~~~g~~~~~~wS  270 (448)
T PRK04792        198 YQLMIADYDGYNE-QML-LRSPEPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREKV---TSFPGINGAPRFS  270 (448)
T ss_pred             eEEEEEeCCCCCc-eEe-ecCCCcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEEe---cCCCCCcCCeeEC
Confidence            3677778765543 333 45677889999999  9999887654 23  588889877654332   2222334568999


Q ss_pred             CCCCeEEEEecCCCe--EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eEEEEecCC
Q 012712          160 PGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRK  235 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~  235 (458)
                      |++..++++.+.++.  |+++|+.+++......           +.......+|+||+..++++...++  .|+++|+.+
T Consensus       271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-----------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~  339 (448)
T PRK04792        271 PDGKKLALVLSKDGQPEIYVVDIATKALTRITR-----------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS  339 (448)
T ss_pred             CCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-----------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            999766666677775  7778888776433221           1123466789998544444444444  466667765


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      ++..               .+. .........+|+|||++|+..+.  +  .|.++|+.++..                 
T Consensus       340 g~~~---------------~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-----------------  386 (448)
T PRK04792        340 GKVS---------------RLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-----------------  386 (448)
T ss_pred             CCEE---------------EEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-----------------
Confidence            5421               110 01112345689999998877653  3  356667665321                 


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC-C--eEEEEEecCCeEEEEeecCCcee
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-G--RIFIWKKKGGELIRVIEADRHVV  388 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v  388 (458)
                                            ..+.....   .....| +|||+.|+..+.+ |  .+++++. +++..+.+..+.+.+
T Consensus       387 ----------------------~~lt~~~~---d~~ps~-spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~  439 (448)
T PRK04792        387 ----------------------QVLTSTRL---DESPSV-APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEV  439 (448)
T ss_pred             ----------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCc
Confidence                                  11111110   112346 9999988765543 3  4777776 666677776666678


Q ss_pred             eEEEecCC
Q 012712          389 NCIEPHPH  396 (458)
Q Consensus       389 ~~~~~s~~  396 (458)
                      ...+|+|-
T Consensus       440 ~~p~Wsp~  447 (448)
T PRK04792        440 KSPAWSPF  447 (448)
T ss_pred             CCCccCCC
Confidence            88899873

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.60  E-value=1e-12  Score=103.17  Aligned_cols=206  Identities=16%  Similarity=0.220  Sum_probs=148.2

Q ss_pred             CCceEEEEEec---CCC-EEEEecCCCeEEEEECCCcceeeeeccCCC------cceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           61 RGCVNTVSFNT---DGD-ILISGSDDRRVILWDWKTERVKLSFHSGHN------DNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        61 ~~~v~~~~~s~---~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      +..+..+.|..   +|. .|+-+..+|.|.++.....+....+ .+-.      ....++.|++  .+..++++-.+|.+
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~  145 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSI  145 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeec--cCceEEEEcCCCcE
Confidence            35566777764   454 5667778899999987655543333 2211      1245778888  88889999999999


Q ss_pred             EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      .+-+.........+..+.|..++..+.|+...++++++|+.|+.+..||++.++ ...+.....       +...|.++.
T Consensus       146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kv-------H~~GV~SI~  217 (339)
T KOG0280|consen  146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKV-------HTSGVVSIY  217 (339)
T ss_pred             EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeeccee-------eecceEEEe
Confidence            866655544444345889999999999999988999999999999999999443 122221111       566789999


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEecCCcEEEEE
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFT  288 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~~  288 (458)
                      -+|..+.++++|+.|-.|++||.|+...        |+       ....-.+.|..+.++|.  +++|+++.-+..++-+
T Consensus       218 ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl-------~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  218 SSPPKPTYIATGSYDECIRVLDTRNMGK--------PL-------FKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             cCCCCCceEEEeccccceeeeehhcccC--------cc-------ccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence            9887789999999999999999996431        11       11223478999999996  4566677677777777


Q ss_pred             ccCC
Q 012712          289 QDMG  292 (458)
Q Consensus       289 ~~~~  292 (458)
                      ...+
T Consensus       283 ~~~~  286 (339)
T KOG0280|consen  283 SSDK  286 (339)
T ss_pred             eccc
Confidence            7654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.60  E-value=3.1e-13  Score=108.39  Aligned_cols=246  Identities=16%  Similarity=0.237  Sum_probs=168.3

Q ss_pred             eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712           99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF  178 (458)
Q Consensus        99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  178 (458)
                      ...+|.+.+++...-|  ..+-+++.+.|.++++|--++...........-..+++++.+.+.. ..|+.+-..|++.-+
T Consensus        19 ~~eG~~d~vn~~~l~~--~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIP--KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhcCchhhhhhheecc--CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEE
Confidence            3478999999988888  7778999999999999975544332222222345678999999988 678999999999888


Q ss_pred             eCCCC----CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          179 DLRTG----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       179 d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      .+...    ...+.+..          +...+..+-|+-. ..++++.+.|..+.---.+.+..++.+.+..+       
T Consensus        96 s~sedfnkm~~~r~~~~----------h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-------  157 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLA----------HQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-------  157 (404)
T ss_pred             Ehhhhhhhcchhhhhhh----------hhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEeecc-------
Confidence            65432    22222221          5567888888876 68999999998776555555544333221110       


Q ss_pred             ccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712          255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP  333 (458)
Q Consensus       255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (458)
                               .+++.+.-.  +...|. .+.+..-.+..                                    .....+
T Consensus       158 ---------~t~~~~d~~--~~fvGd~~gqvt~lr~~~------------------------------------~~~~~i  190 (404)
T KOG1409|consen  158 ---------ASALQFDAL--YAFVGDHSGQITMLKLEQ------------------------------------NGCQLI  190 (404)
T ss_pred             ---------CCCCceeeE--EEEecccccceEEEEEee------------------------------------cCCceE
Confidence                     000000000  111111 22232222221                                    114567


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe-EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      ..+.+|...  +.+++| .|..+.|++|..|..+-+||+.-.+ ...++.+|...|..+...+.-+.|.+++.||.|.+|
T Consensus       191 ~~~~~h~~~--~~~l~W-d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w  267 (404)
T KOG1409|consen  191 TTFNGHTGE--VTCLKW-DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVW  267 (404)
T ss_pred             EEEcCcccc--eEEEEE-cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence            788899986  899999 9999999999999999999996443 345678899999999988888999999999999999


Q ss_pred             cCC
Q 012712          413 TPN  415 (458)
Q Consensus       413 ~~~  415 (458)
                      +.+
T Consensus       268 ~mn  270 (404)
T KOG1409|consen  268 NMN  270 (404)
T ss_pred             ecc
Confidence            765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=7.6e-11  Score=96.06  Aligned_cols=292  Identities=11%  Similarity=0.191  Sum_probs=178.6

Q ss_pred             CCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccc--cceeeeeccccccceE
Q 012712           82 DRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILER--GGVETKLLGKHQGRAH  154 (458)
Q Consensus        82 d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~--~~~~~~~~~~~~~~v~  154 (458)
                      +.-|.+|++++..  .....+..+.+..+-++|+|  +.+.|.++..   +|.|..|.+...  +....-.......+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            4569999987432  22222245678899999999  9989988765   477888887653  3221111111223448


Q ss_pred             EEEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcc--eeecceEEEEECCCCCcEEEEec-CCCeEEE
Q 012712          155 KLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVAG-SDEYTRL  230 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i  230 (458)
                      .+++++++..++.+.-.-|.|.++-++. |................|  +....+....+.|+ ++++++.. .--.|.+
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~  171 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFL  171 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEE
Confidence            8999999955444445568999999865 443332222111111111  11223778899998 56776654 3346999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCC-CCCCCCCCccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLG-PNPPPSSPVSTRS  307 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~-~~~~~~~~~~~~~  307 (458)
                      |++..+++....          +..+  ......+.|+|+|++++.....  +++|.+|..+.... ...+.        
T Consensus       172 y~~~dg~L~~~~----------~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ--------  231 (346)
T COG2706         172 YDLDDGKLTPAD----------PAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ--------  231 (346)
T ss_pred             EEcccCcccccc----------cccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee--------
Confidence            999977643221          1111  2345678999999999877766  66899998876311 11100        


Q ss_pred             cccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEecCC-eEEE---Eee
Q 012712          308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGG-ELIR---VIE  382 (458)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~-~~~~---~~~  382 (458)
                                          ........|.+...   ..++.. ++||++|++... ...|.+|.+... ..+.   ...
T Consensus       232 --------------------~i~tlP~dF~g~~~---~aaIhi-s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~  287 (346)
T COG2706         232 --------------------TIDTLPEDFTGTNW---AAAIHI-SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP  287 (346)
T ss_pred             --------------------eeccCccccCCCCc---eeEEEE-CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec
Confidence                                00112233444433   566776 999999987653 247888877543 2222   223


Q ss_pred             cCCceeeEEEecCCCCeEEEeecC-CcEEEecCC--ccccc
Q 012712          383 ADRHVVNCIEPHPHSTVLASSGIE-SDIKILTPN--AADRA  420 (458)
Q Consensus       383 ~~~~~v~~~~~s~~~~~l~s~~~d-~~i~iw~~~--~~~~~  420 (458)
                      .+........|+|.|++|+++..+ ..|.+|.++  +|++.
T Consensus       288 teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         288 TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence            344557899999999999988775 468888665  44443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=5.6e-11  Score=96.83  Aligned_cols=281  Identities=14%  Similarity=0.142  Sum_probs=172.2

Q ss_pred             cCCCceEEEEEecCCCEEEEecC---CCeEEEEECCC--cceeeeec-cCCCcceeEEEEccCCCCeEEEEEcC-CCcEE
Q 012712           59 KHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKT--ERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVR  131 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~  131 (458)
                      .+.+..+-|+|+|++++|.++..   +|.|.-|.++.  |+....-. .....+-..+++++  ++++++++.. .|.|.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~  114 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVS  114 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEE
Confidence            46678899999999999998755   46787777765  44322111 11223348899999  9999998876 58899


Q ss_pred             Eeeccccccee-eeeccccccc----------eEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712          132 HAQILERGGVE-TKLLGKHQGR----------AHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRN  199 (458)
Q Consensus       132 vw~~~~~~~~~-~~~~~~~~~~----------v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  199 (458)
                      ++.+.....+. ......|.+.          +....+.|+++ +|++.. .--.|.+|++..+.....-...-.     
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-----  188 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-----  188 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEcccCccccccccccC-----
Confidence            99997643322 1123335544          88899999994 555543 234699999997765433221111     


Q ss_pred             ceeecceEEEEECCCCCcEEEE-ecCCCeEEEEecCCC--ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712          200 YMTVVNLNAIAIDPRNANLFAV-AGSDEYTRLYDIRKY--KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL  276 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  276 (458)
                        .....+-|.|+|+ +++..+ .--+++|.+|.....  +.... +     .....+.-.. .......|..+|||++|
T Consensus       189 --~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~g~~~~l-Q-----~i~tlP~dF~-g~~~~aaIhis~dGrFL  258 (346)
T COG2706         189 --PGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAVGKFEEL-Q-----TIDTLPEDFT-GTNWAAAIHISPDGRFL  258 (346)
T ss_pred             --CCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCCceEEEe-e-----eeccCccccC-CCCceeEEEECCCCCEE
Confidence              3335688999998 555544 456889999998774  21110 0     0000111111 24567789999999999


Q ss_pred             EEecCC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712          277 VSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK  354 (458)
Q Consensus       277 ~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~  354 (458)
                      .++..+  .|.+|.+......                                  .........+.  ..-+...+ +++
T Consensus       259 YasNRg~dsI~~f~V~~~~g~----------------------------------L~~~~~~~teg--~~PR~F~i-~~~  301 (346)
T COG2706         259 YASNRGHDSIAVFSVDPDGGK----------------------------------LELVGITPTEG--QFPRDFNI-NPS  301 (346)
T ss_pred             EEecCCCCeEEEEEEcCCCCE----------------------------------EEEEEEeccCC--cCCcccee-CCC
Confidence            998854  6888887653110                                  00111111111  12356666 999


Q ss_pred             CcEEEEecCC-CeEEEEEec--CCeEEEEee-cCCceeeEEEec
Q 012712          355 CEYVVSGSDC-GRIFIWKKK--GGELIRVIE-ADRHVVNCIEPH  394 (458)
Q Consensus       355 ~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~s  394 (458)
                      |++|+++.++ ..|.+|..+  +|++-.... .......|+.|.
T Consensus       302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         302 GRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            9999998876 468888764  455443332 233345566653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=5.6e-12  Score=112.10  Aligned_cols=402  Identities=13%  Similarity=0.075  Sum_probs=240.8

Q ss_pred             eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC------------CEEEEe
Q 012712           12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG------------DILISG   79 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~------------~~l~s~   79 (458)
                      ++|-|+ ...|.+-|..+-+.+                     +.+.-|...|+.+.|.|..            -+||++
T Consensus        28 LiAygs-hslV~VVDs~s~q~i---------------------qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa   85 (1062)
T KOG1912|consen   28 LIAYGS-HSLVSVVDSRSLQLI---------------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA   85 (1062)
T ss_pred             eEEEec-CceEEEEehhhhhhh---------------------hccccCccceeEEEeccCCCchhccCccccceeEEec
Confidence            556666 567778888765555                     5588899999999998731            357788


Q ss_pred             cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCC--eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEE
Q 012712           80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD--RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA  157 (458)
Q Consensus        80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~  157 (458)
                      .-.|.|.+||...+..+..+ ..|..++..++|-|..+.  ..|+.-.....+.+|+..+|+....  .........|+.
T Consensus        86 D~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f~  162 (1062)
T KOG1912|consen   86 DISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCFR  162 (1062)
T ss_pred             cccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--cccCCcceeeee
Confidence            88899999999988876666 678899999999885443  3566666678999999999988766  333445667789


Q ss_pred             EcCCCCeEEEEecCCCeEEEEeCCCCC----ccceeeecccCCC---------Ccceee---------cceEEEEECCCC
Q 012712          158 IEPGSPHVFYTCGEDGLVQHFDLRTGA----ATELFTCRPIDDR---------RNYMTV---------VNLNAIAIDPRN  215 (458)
Q Consensus       158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~---------~~~~~~---------~~v~~~~~~p~~  215 (458)
                      +.|-....+..-+..|.+.+-+.-..+    ..+.++.......         .+....         .....++|+|.-
T Consensus       163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~  242 (1062)
T KOG1912|consen  163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW  242 (1062)
T ss_pred             eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence            998765556666666777766543211    1222222111000         000000         012245678863


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc--EEEEec-CCcEEEEEccCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE--LLVSYN-DEFIYLFTQDMG  292 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~-~~~i~i~~~~~~  292 (458)
                      .+.++ ......+.++|++-......               ..-..+.+.-+.+-|+++  .|.+.. +|.+.+|-.+..
T Consensus       243 rn~lf-i~~prellv~dle~~~~l~v---------------vpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~  306 (1062)
T KOG1912|consen  243 RNILF-ITFPRELLVFDLEYECCLAV---------------VPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE  306 (1062)
T ss_pred             hceEE-EEeccceEEEcchhhceeEE---------------EEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence            33443 44567799999986543222               222244556677777754  455554 777888865542


Q ss_pred             CCCCCCCCC---------------CccccccccccCCCCc-ccc-------------------CCCCCCcc---------
Q 012712          293 LGPNPPPSS---------------PVSTRSEASEMGSDHT-SAA-------------------SPSTANTD---------  328 (458)
Q Consensus       293 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~---------  328 (458)
                      ......+..               .....+..+...|... .++                   ........         
T Consensus       307 ~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~  386 (1062)
T KOG1912|consen  307 PTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFN  386 (1062)
T ss_pred             CccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccccc
Confidence            221111100               0000000000011100 000                   00000000         


Q ss_pred             ---------cccCceeecCccceeee---------eEEEEecCCCc-------EEEEecCCCeEEEEEecCCeEEEEeec
Q 012712          329 ---------VRIAPQVYKGHRNCVTV---------KGVNFFGPKCE-------YVVSGSDCGRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       329 ---------~~~~~~~~~~~~~~~~i---------~~~~~~s~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~  383 (458)
                               ....+....+|......         .-... .|.|+       ++|.|...|+|.++|+.++...+.+..
T Consensus       387 ~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~-~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv  465 (1062)
T KOG1912|consen  387 LSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVEN-DPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV  465 (1062)
T ss_pred             CceeehhhccccchhhcCCCCCCceeeecccCcccceeec-CCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc
Confidence                     00000000122221111         11111 33332       678899999999999999999999999


Q ss_pred             CCceeeEEEecCCCCeEEE---------eecCCcEEEecCCccccccccc----ccccEEEEEEecCCcEEEeeecCCce
Q 012712          384 DRHVVNCIEPHPHSTVLAS---------SGIESDIKILTPNAADRATLPT----NIEQVCFSIYSADYWWSKSQNFSCSI  450 (458)
Q Consensus       384 ~~~~v~~~~~s~~~~~l~s---------~~~d~~i~iw~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~s~~~d~~i  450 (458)
                      |...|.++.|--..+++-.         ++.-+.+.+=++.+|....+.+    ...+|+.+..|..|.||+..-.|.-+
T Consensus       466 ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~pl  545 (1062)
T KOG1912|consen  466 HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPL  545 (1062)
T ss_pred             cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccch
Confidence            9999999999766554432         2223467788888886665542    33459999999999999999999999


Q ss_pred             EEEEE
Q 012712          451 LLFEW  455 (458)
Q Consensus       451 ~~w~~  455 (458)
                      .+||.
T Consensus       546 Eiwd~  550 (1062)
T KOG1912|consen  546 EIWDL  550 (1062)
T ss_pred             HHHhh
Confidence            99986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=9.9e-13  Score=119.18  Aligned_cols=235  Identities=9%  Similarity=0.082  Sum_probs=145.1

Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      .|.++|.+.+.. ..+ ..+...+....|+|  ||+.|+..+.+   ..|.+|++.+++...   +....+......|+|
T Consensus       180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~Sp  252 (430)
T PRK00178        180 TLQRSDYDGARA-VTL-LQSREPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSP  252 (430)
T ss_pred             EEEEECCCCCCc-eEE-ecCCCceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECC
Confidence            578888775543 333 35677899999999  99999876543   368899998775433   233334455789999


Q ss_pred             CCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eEEEEecCCC
Q 012712          161 GSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKY  236 (458)
Q Consensus       161 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~  236 (458)
                      +|..++++...+|  .|+++|+.+++......           .........|+|++..++++...+|  .|+++|+.++
T Consensus       253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        253 DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN-----------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCeEEccc-----------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9966666666555  58888998876433221           1113456789998544444444444  4677777665


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM  312 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
                      +...               +.. .........|+|+|+.|+....  +  .|.++|+.++..                  
T Consensus       322 ~~~~---------------lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------------  367 (430)
T PRK00178        322 RAER---------------VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------------  367 (430)
T ss_pred             CEEE---------------eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------------
Confidence            4211               000 0112345689999999887652  2  478888876421                  


Q ss_pred             CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---CeEEEEEecCCeEEEEeecCCceee
Q 012712          313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVN  389 (458)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~  389 (458)
                                           +.+.....   .....| +|||++++..+.+   ..++++++ .+...+.+..+.+.+.
T Consensus       368 ---------------------~~lt~~~~---~~~p~~-spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~  421 (430)
T PRK00178        368 ---------------------RILTDTSL---DESPSV-APNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQGEVR  421 (430)
T ss_pred             ---------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence                                 11111101   113356 9999999876544   35677777 4444555655566677


Q ss_pred             EEEecCC
Q 012712          390 CIEPHPH  396 (458)
Q Consensus       390 ~~~~s~~  396 (458)
                      ..+|+|-
T Consensus       422 ~p~ws~~  428 (430)
T PRK00178        422 EPSWSPY  428 (430)
T ss_pred             CCccCCC
Confidence            8888873

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.2e-12  Score=116.87  Aligned_cols=218  Identities=16%  Similarity=0.070  Sum_probs=129.2

Q ss_pred             CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc--EEEEecCCC--eEEEEecCCCccCCCccCCCCC
Q 012712          173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN--LFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      ..|.+.|...+.......           ......+-.|+||+..  ++++...+|  .|++.++..++..         
T Consensus       165 ~~l~~~d~dG~~~~~lt~-----------~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---------  224 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQ-----------EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---------  224 (428)
T ss_pred             ceEEEEcCCCCCceEccc-----------CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------
Confidence            367777776655433221           1223456799999543  333444443  5777788766421         


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEE--EEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYL--FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP  322 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (458)
                             ......+.....+|+|||+.|+..++  +  .+++  |++..+..                            
T Consensus       225 -------~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~----------------------------  269 (428)
T PRK01029        225 -------KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI----------------------------  269 (428)
T ss_pred             -------EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC----------------------------
Confidence                   11112334456899999998887653  2  3433  55543210                            


Q ss_pred             CCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEE--EecC-CeEEEEeecCCceeeEEEecCCCC
Q 012712          323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIW--KKKG-GELIRVIEADRHVVNCIEPHPHST  398 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~~~~s~~~~  398 (458)
                             ............  .....+| +|||+.|+..+ .+|...+|  ++.. +.....+..+...+....|||||+
T Consensus       270 -------g~~~~lt~~~~~--~~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        270 -------GKPRRLLNEAFG--TQGNPSF-SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             -------CcceEeecCCCC--CcCCeEE-CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence                   011111111111  1345677 99999888665 45654555  4432 233444554555677899999999


Q ss_pred             eEEEeecC---CcEEEecCCcccccccccccccEEEEEEecCCcEEEeee-cC--CceEEEEE
Q 012712          399 VLASSGIE---SDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQN-FS--CSILLFEW  455 (458)
Q Consensus       399 ~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~d--~~i~~w~~  455 (458)
                      .|+..+.+   ..|.+||+.+++...+......+....|+|||++|+... .+  ..|.+++.
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            98876543   469999999988777665555678899999998887533 33  34655553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.57  E-value=1.1e-10  Score=99.21  Aligned_cols=292  Identities=12%  Similarity=0.105  Sum_probs=167.2

Q ss_pred             CCCeEEEeeCC-----CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC--
Q 012712            9 NNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD--   81 (458)
Q Consensus         9 ~~~~l~~~~~d-----~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--   81 (458)
                      ++.+++.-...     ++|.+.|..+++.+..                     +..-..+- .+ +||||+.|+.+..  
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~---------------------i~~G~~P~-~~-~spDg~~lyva~~~~   67 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGM---------------------TDGGFLPN-PV-VASDGSFFAHASTVY   67 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEE---------------------EEccCCCc-ee-ECCCCCEEEEEeccc
Confidence            44454444333     8899999998876643                     33222222 24 9999998887765  


Q ss_pred             --------CCeEEEEECCCcceeeeeccCCC------cceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceeeee
Q 012712           82 --------DRRVILWDWKTERVKLSFHSGHN------DNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKL  145 (458)
Q Consensus        82 --------d~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~  145 (458)
                              +..|.+||..+.+.+.++..+-.      .....++++|  ||++|+....  +..|.+.|+.+++.+....
T Consensus        68 ~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~  145 (352)
T TIGR02658        68 SRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD  145 (352)
T ss_pred             cccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence                    67999999999999888743211      2234788999  9999998773  6899999999988766533


Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      ..   +...-...+++. +  ...+.||......+........-...-...........+    .|.+.++.++++..+ 
T Consensus       146 vp---~~~~vy~t~e~~-~--~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-  214 (352)
T TIGR02658       146 VP---DCYHIFPTANDT-F--FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-  214 (352)
T ss_pred             CC---CCcEEEEecCCc-c--EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-
Confidence            31   111112222222 1  222344444443332221111100000000000000111    345523566666665 


Q ss_pred             CeEEEEecCCCccCCCccCCCCCCCcCCCcc-ccccccceeEEEeCCCCcEEEEec-----------CCcEEEEEccCCC
Q 012712          226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQDMGL  293 (458)
Q Consensus       226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-----------~~~i~i~~~~~~~  293 (458)
                      |.|.+.|+...+......+    ........ ..-..+.+.-++++|+++.+....           .+.|.++|..+. 
T Consensus       215 G~V~~id~~~~~~~~~~~~----~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-  289 (352)
T TIGR02658       215 GKIFQIDLSSGDAKFLPAI----EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-  289 (352)
T ss_pred             CeEEEEecCCCcceeccee----eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-
Confidence            9999999765432211100    00000000 000123445599999988776632           136889998773 


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEec-CCCeEEEEE
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIFIWK  371 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~-~dg~i~iwd  371 (458)
                                                           +.+..+.-..   .+..+++ +||++ +|++.. .++.|.++|
T Consensus       290 -------------------------------------kvi~~i~vG~---~~~~iav-S~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       290 -------------------------------------KRLRKIELGH---EIDSINV-SQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             -------------------------------------eEEEEEeCCC---ceeeEEE-CCCCCeEEEEeCCCCCcEEEEE
Confidence                                                 3333333222   2678888 99999 777666 578899999


Q ss_pred             ecCCeEEEEee
Q 012712          372 KKGGELIRVIE  382 (458)
Q Consensus       372 ~~~~~~~~~~~  382 (458)
                      ..+++.++++.
T Consensus       329 ~~t~k~i~~i~  339 (352)
T TIGR02658       329 AETGKELSSVN  339 (352)
T ss_pred             CcCCeEEeeec
Confidence            99999998883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.56  E-value=1.3e-11  Score=110.04  Aligned_cols=309  Identities=10%  Similarity=0.001  Sum_probs=179.2

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      +..+++++.++.|..+|..+|+.+.+... .......+..    ++..++.++.+|.+..+|..+++.+....+.   ..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~  136 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---SE  136 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---ce
Confidence            56788888899999999999998766521 1111112222    5677888888999999999888876653332   12


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      +.+.-.. .+ ..++.++.++.+..+|.++++.+..+........    .. ...+.... +  ..++.+..++.+..+|
T Consensus       137 ~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----~~-~~~sp~~~-~--~~v~~~~~~g~v~ald  206 (377)
T TIGR03300       137 VLSPPLV-AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALT----LR-GSASPVIA-D--GGVLVGFAGGKLVALD  206 (377)
T ss_pred             eecCCEE-EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCcee----ec-CCCCCEEE-C--CEEEEECCCCEEEEEE
Confidence            2111111 12 3466677899999999999987766543211000    00 00111121 2  3677788889999999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccce-eEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      .++++..-......+.........     ..+ ....+ .++.+++...++.++.||..+++......            
T Consensus       207 ~~tG~~~W~~~~~~~~g~~~~~~~-----~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~------------  268 (377)
T TIGR03300       207 LQTGQPLWEQRVALPKGRTELERL-----VDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRD------------  268 (377)
T ss_pred             ccCCCEeeeeccccCCCCCchhhh-----hccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeec------------
Confidence            988865432211111000000000     000 01111 24445555557789999998764322210            


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeE
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNC  390 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~  390 (458)
                                              ..   .   ....   ..++..++.++.+|.++.+|..+++.+...... ......
T Consensus       269 ------------------------~~---~---~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss  315 (377)
T TIGR03300       269 ------------------------AS---S---YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA  315 (377)
T ss_pred             ------------------------cC---C---ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc
Confidence                                    00   0   1111   224567778888999999999999877655321 112222


Q ss_pred             EEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712          391 IEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       391 ~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      ...  .+..|++++.+|.|.++|..+++.. ....+...+...-...+++ |+.++.||.|..|
T Consensus       316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~  376 (377)
T TIGR03300       316 PAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF  376 (377)
T ss_pred             CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence            222  4668888999999999999988776 3333333333332333444 6678899998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=6.1e-12  Score=110.96  Aligned_cols=246  Identities=14%  Similarity=0.117  Sum_probs=164.2

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR   83 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   83 (458)
                      +.++....++|+|+.||.+++-.+.+...-... ++++..     ..+..-+++.||.+.|.-+.|+.+.+.|-|...+|
T Consensus        20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~-~glaa~-----snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNK-SGLAAA-----SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             EEEcccCCeEEeccccceeEEEEccccCCcccc-cccccc-----cccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            456677789999999999999998865433221 111111     23455678999999999999999999999999999


Q ss_pred             eEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           84 RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      .|.+|-+-.+.-..... .....-|.+++|..  ||..++..-.||.|.+=.+..++ +..+.+++  .....+.|++|.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg--~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGNR-IWGKELKG--QLLAHVLWSEDL  168 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccce-ecchhcch--heccceeecccH
Confidence            99999998776433322 34566789999999  99999999999998877665433 22222322  123468899998


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccce-----eeecccCCCCcceeecceEEEEEC--------CCCCcEEEEecCCCeEE
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATEL-----FTCRPIDDRRNYMTVVNLNAIAID--------PRNANLFAVAGSDEYTR  229 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~--------p~~~~~l~~~~~dg~i~  229 (458)
                       ..++.+-..|.+.++|.+..-..+.     .........    ....+..+.|.        |+ .-.++++..+|.+.
T Consensus       169 -~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~----~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  169 -EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN----FPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQ  242 (1189)
T ss_pred             -HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC----CCccccceeeccCccccCCCC-CCEEEEEEcCceeh
Confidence             5667777889999999764321110     000000000    11123344442        45 46889999999888


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                      +-.-.+..                ....-...-.+..+.|+++|.+|+.++.+
T Consensus       243 iMR~eND~----------------~Pvv~dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  243 IMRSENDP----------------EPVVVDTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             hhhhcCCC----------------CCeEEecccEeecceecCCCcEEEEccCc
Confidence            86544432                11111223578899999999999988743

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2.3e-11  Score=108.37  Aligned_cols=347  Identities=13%  Similarity=0.114  Sum_probs=198.2

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC---C-CEEEEecCCCe
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---G-DILISGSDDRR   84 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~-~~l~s~~~d~~   84 (458)
                      .--+||++.-.|.|.+||...+..+-                     .+..|.++|..++|-+.   . ..|+.-....+
T Consensus        78 ~~lliAsaD~~GrIil~d~~~~s~~~---------------------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~  136 (1062)
T KOG1912|consen   78 SQLLIASADISGRIILVDFVLASVIN---------------------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST  136 (1062)
T ss_pred             cceeEEeccccCcEEEEEehhhhhhh---------------------hhcCCCcchhheeeeeccCcchheeEEecCCcE
Confidence            34568888899999999999776653                     37789999999999773   3 46666666789


Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-------eeeee------------
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-------VETKL------------  145 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-------~~~~~------------  145 (458)
                      +.+|+..+|+..... ........|+.+.|+ |.+.+..-+..|.+.+-+.-...+       .+...            
T Consensus       137 lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPf-d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~  214 (1062)
T KOG1912|consen  137 LVLWNTDTGEKFWKY-DYSHEILSCFRVDPF-DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET  214 (1062)
T ss_pred             EEEEEccCCceeecc-ccCCcceeeeeeCCC-CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence            999999999988776 333455667888887 555555555555555444321100       00000            


Q ss_pred             -----------------------ccc------------------------------cccceEEEEEcCCC-CeEEEEecC
Q 012712          146 -----------------------LGK------------------------------HQGRAHKLAIEPGS-PHVFYTCGE  171 (458)
Q Consensus       146 -----------------------~~~------------------------------~~~~v~~~~~~~~~-~~~l~s~~~  171 (458)
                                             +..                              ..+.+.-+.+-|+. +..|++.-.
T Consensus       215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~  294 (1062)
T KOG1912|consen  215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS  294 (1062)
T ss_pred             hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEec
Confidence                                   000                              11222334455543 235677778


Q ss_pred             CCeEEEEeCCCCCccc-----eeeecccCC--CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc-
Q 012712          172 DGLVQHFDLRTGAATE-----LFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD-  243 (458)
Q Consensus       172 dg~i~iwd~~~~~~~~-----~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  243 (458)
                      ||.+.+|--+......     .+.......  .-.......+......|..+..++.--.+|.+.+|.+++++...... 
T Consensus       295 nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s  374 (1062)
T KOG1912|consen  295 NGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS  374 (1062)
T ss_pred             CCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc
Confidence            8888888544311110     000000000  00000111233344455545566666678889999998665422111 


Q ss_pred             ----CCCCCC-----------CcCCCccccccccceeEEEeCC-----------CC-------cEEEEec-CCcEEEEEc
Q 012712          244 ----FGQPAD-----------YFCPPNLIGDEQVGITGLAFSD-----------QS-------ELLVSYN-DEFIYLFTQ  289 (458)
Q Consensus       244 ----~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~-----------~~-------~~l~~~~-~~~i~i~~~  289 (458)
                          +..|..           .+......++|.....+....|           .|       .++|.|. .|+|.++|+
T Consensus       375 ~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv  454 (1062)
T KOG1912|consen  375 SSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV  454 (1062)
T ss_pred             ccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence                111111           0001111223333333333322           22       1556666 568999998


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE---------E
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV---------S  360 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~---------~  360 (458)
                      .++                                      .....+..|...  |.++.| .....++-         +
T Consensus       455 st~--------------------------------------~v~~~fsvht~~--VkgleW-~g~sslvSfsys~~n~~s  493 (1062)
T KOG1912|consen  455 STN--------------------------------------AVAASFSVHTSL--VKGLEW-LGNSSLVSFSYSHVNSAS  493 (1062)
T ss_pred             cch--------------------------------------hhhhhhcccccc--eeeeee-ccceeEEEeeeccccccc
Confidence            873                                      344556666664  777777 44333332         2


Q ss_pred             ecCCCeEEEEEecCCeEE--EEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          361 GSDCGRIFIWKKKGGELI--RVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      |+--+.+.+-|+.+|...  +.++ ....+|..+..|.-++||+..-.|.-+.+||+.+..+
T Consensus       494 g~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~  555 (1062)
T KOG1912|consen  494 GGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM  555 (1062)
T ss_pred             cceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence            233356778888888543  2233 2456899999999999999999999999999965433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.50  E-value=4.4e-11  Score=106.61  Aligned_cols=307  Identities=15%  Similarity=0.119  Sum_probs=176.8

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      +.++++++.+|.|..+|..+|+.+.+                     .+-.........  .++..++.++.++.+..+|
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~---------------------~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald  121 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWR---------------------VDLDERLSGGVG--ADGGLVFVGTEKGEVIALD  121 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeee---------------------ecCCCCcccceE--EcCCEEEEEcCCCEEEEEE
Confidence            55788888899999999998987744                     111111111122  2466788888899999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc---eEEEEEcCCCCeEE
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPHVF  166 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l  166 (458)
                      .++|+.+.+...  ...+.+   +|...+..++.++.+|.+..||..+++.+...........   ....... ++  .+
T Consensus       122 ~~tG~~~W~~~~--~~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v  193 (377)
T TIGR03300       122 AEDGKELWRAKL--SSEVLS---PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--GV  193 (377)
T ss_pred             CCCCcEeeeecc--Cceeec---CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--EE
Confidence            999998776522  223322   1111344677777889999999998887654322211000   0011111 22  46


Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce-EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG  245 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  245 (458)
                      +.+..++.+..+|+++++.....................+ ....+.   +..+++++.+|.++.+|..+++..-.... 
T Consensus       194 ~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-  269 (377)
T TIGR03300       194 LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDA-  269 (377)
T ss_pred             EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence            7788889999999999986554322110000000000000 111121   24677788899999999988764322110 


Q ss_pred             CCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 012712          246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA  325 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (458)
                                      ........ .++.+++...++.++.+|..+++......                          
T Consensus       270 ----------------~~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~--------------------------  306 (377)
T TIGR03300       270 ----------------SSYQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKND--------------------------  306 (377)
T ss_pred             ----------------CCccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccc--------------------------
Confidence                            01111111 13444444446789999988764332210                          


Q ss_pred             CcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCcee-eEEEecCCCCeEEEee
Q 012712          326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV-NCIEPHPHSTVLASSG  404 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~  404 (458)
                               .+....    ..+...   .+..|++++.+|.++++|..+++.+..++.+...+ ...++. ++ .|+.++
T Consensus       307 ---------~~~~~~----~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~  368 (377)
T TIGR03300       307 ---------ELKYRQ----LTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQT  368 (377)
T ss_pred             ---------cccCCc----cccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEe
Confidence                     010000    111111   35688889999999999999999998888666433 233332 33 477888


Q ss_pred             cCCcEEEe
Q 012712          405 IESDIKIL  412 (458)
Q Consensus       405 ~d~~i~iw  412 (458)
                      .||.|..+
T Consensus       369 ~dG~l~~~  376 (377)
T TIGR03300       369 RDGDLYAF  376 (377)
T ss_pred             CCceEEEe
Confidence            89998775

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.49  E-value=2.4e-12  Score=102.09  Aligned_cols=283  Identities=13%  Similarity=0.160  Sum_probs=171.3

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc-eeeee---ccCCC------------cceeEEEEccCCCCeEEEE
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSF---HSGHN------------DNVFQAKIMPFTDDRSIVT  123 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~------------~~i~~~~~~~~~~~~~l~s  123 (458)
                      ....|+++.|...|.||++|...|.|.+|.-.... +...+   .++|.            ..|..+.|.....-..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999999999999765432 11111   13343            4688889886333456777


Q ss_pred             EcCCCcEEEeecccccce-----------------------------------------eeeeccccccceEEEEEcCCC
Q 012712          124 CAADGQVRHAQILERGGV-----------------------------------------ETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus       124 ~~~dg~i~vw~~~~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      .+.|.+|++|.+......                                         .......|...++++.|+.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            778999999988543110                                         000113577788999999887


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  242 (458)
                       ..+++ +.|-.|.+|+++-......+.-.+....+.  -..-|++..|+|...+.+.-.+..|.|++-|+|...+-...
T Consensus       185 -et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmee--LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         185 -ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEE--LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             -heeee-ccceeeeeccccccCCceEEEeccCccHHH--HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence             44444 457789999987544322221111111111  22347888999987788888899999999999854321100


Q ss_pred             -cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCC-CCCCCccccccccccCCCCcccc
Q 012712          243 -DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP-PPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       243 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                       .+-.............+-...|..+.|+++|+++++-.--++++||.+..+.+.. ++-+....               
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~---------------  325 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM---------------  325 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHH---------------
Confidence             0000000000112223334678899999999999998888999999987543211 11000000               


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                                ..+........--.-..+.| |.|.+.+.+|+..+..-+|-.
T Consensus       326 ----------~~l~d~YEnDaifdkFeisf-Sgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         326 ----------DELNDVYENDAIFDKFEISF-SGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             ----------HHHHhhhhccceeeeEEEEe-cCCcccccccccccceeeecc
Confidence                      00000000111011245666 888899999998888777764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.1e-11  Score=109.43  Aligned_cols=281  Identities=10%  Similarity=0.106  Sum_probs=184.6

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce--------------eeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--------------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      ......|++|+....++|+|+.||.+++-.+.+...              +.+.+.+|.+.|.-+.|..  ..+.|-++.
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--~~QKLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--NNQKLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--ccccccccC
Confidence            345678999999999999999999999998765321              1223479999999999998  888899999


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc-ceeeecccCCCCcceeec
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVV  204 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~  204 (458)
                      .+|.|.+|-+-.+.......-....+.|.+++|+.+| ..+...-.||.|.+=.++..+.- +.+.            ..
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLk------------g~  157 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELK------------GQ  157 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcc------------hh
Confidence            9999999999887765544344556788999999999 56777888888877665543221 1111            11


Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC--------CCCcEE
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS--------DQSELL  276 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l  276 (458)
                      ....+.|++| ...++.+-.+|.+.+||....-.. .+.....+.   ...........|..+.|.        |+...|
T Consensus       158 ~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~~-Kl~~~c~Vn---~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l  232 (1189)
T KOG2041|consen  158 LLAHVLWSED-LEQALFKKANGETHLYDNQGNFER-KLEKDCEVN---GTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL  232 (1189)
T ss_pred             eccceeeccc-HHHHHhhhcCCcEEEecccccHHH-hhhhceEEe---eeeeecCCCccccceeeccCccccCCCCCCEE
Confidence            2457889998 577777888999999997643111 000000000   000011111224444443        455566


Q ss_pred             EEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712          277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC  355 (458)
Q Consensus       277 ~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~  355 (458)
                      +.+. .|.+.+..-.+.                                      +.+..+...   ..+....| +++|
T Consensus       233 avcy~nGr~QiMR~eND--------------------------------------~~Pvv~dtg---m~~vgakW-nh~G  270 (1189)
T KOG2041|consen  233 AVCYANGRMQIMRSEND--------------------------------------PEPVVVDTG---MKIVGAKW-NHNG  270 (1189)
T ss_pred             EEEEcCceehhhhhcCC--------------------------------------CCCeEEecc---cEeeccee-cCCC
Confidence            6665 445655543331                                      111111111   23778888 9999


Q ss_pred             cEEEEecCC---------CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712          356 EYVVSGSDC---------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS  403 (458)
Q Consensus       356 ~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  403 (458)
                      ..||.++.+         +.|.+|.. -|+.+.+++.....|++++|-..|-.+|.+
T Consensus       271 ~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  271 AVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             cEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence            999988754         35666664 678888998888889999997766555443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.48  E-value=6.6e-12  Score=108.23  Aligned_cols=169  Identities=19%  Similarity=0.157  Sum_probs=134.7

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccc---------------------------------------ccccccc
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFAL---------------------------------------RRRASED   46 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~---------------------------------------~~~~~~~   46 (458)
                      +||...++|....||.+||||..++++... |.|                                       ++-+...
T Consensus         1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e-~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    1 SPPALDYFALSTGDGRLRIWDTAKNQLQQE-FAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             CCchhheEeecCCCCeEEEEEccCceeeee-eccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            467778899999999999999998876543 222                                       2222222


Q ss_pred             ceEEe------eeeeEee--cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCC
Q 012712           47 LVLRL------GIYAKLD--KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD  118 (458)
Q Consensus        47 ~~~~~------~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  118 (458)
                      +..-+      ++...+.  .|.+.|.++.++.+-..|.+++.|+.+..|+......+..+ ......+.+++.+|  |+
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~~~~~~~~sl~is~--D~  156 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-KEQKPLVSSLCISP--DG  156 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-ccCCCccceEEEcC--CC
Confidence            22221      4555554  79999999999998899999999999999999988887776 67788899999999  99


Q ss_pred             eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC-----CCeEEEEecCCCeEEEEeCCC
Q 012712          119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-----SPHVFYTCGEDGLVQHFDLRT  182 (458)
Q Consensus       119 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~  182 (458)
                      ..+++++  ++|++||+++.+.+..  +.+|.++|++++|.-+     |.++|.+...+.-+.+|-++.
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~~--ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVIT--FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEEE--ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999998  5899999999888876  9999999999999876     555666666677788887665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.47  E-value=7.2e-10  Score=107.39  Aligned_cols=369  Identities=13%  Similarity=0.038  Sum_probs=216.9

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccc--------ccc---ccc-----------------cceEEeeee
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFAL--------RRR---ASE-----------------DLVLRLGIY   54 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~--------~~~---~~~-----------------~~~~~~~~~   54 (458)
                      .+.+|||..+|+....++.+.+-... -+.+....-.        .++   |++                 +....-...
T Consensus       125 a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~  203 (928)
T PF04762_consen  125 AASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDE  203 (928)
T ss_pred             EEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcccc
Confidence            46799999999999989988776543 2332220000        000   000                 000000001


Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecC------CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC--
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--  126 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--  126 (458)
                      ..+. +...-..++|-.||.++|+.+.      -+.++||+-+ |...... ..-.+--.+++|.|  .|++||+...  
T Consensus       204 ~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrP--sG~lIA~~q~~~  278 (928)
T PF04762_consen  204 GKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRP--SGNLIASSQRLP  278 (928)
T ss_pred             Cccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCC--CCCEEEEEEEcC
Confidence            2233 5556678999999999998764      2689999955 6543332 33344456789999  9999998765  


Q ss_pred             -CCcEEEeecccccceeeeecc--ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--ceeeecccCCCCcce
Q 012712          127 -DGQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYM  201 (458)
Q Consensus       127 -dg~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~  201 (458)
                       ...|.+|.-+.- .-....+.  .....|..+.|++++ .+|+....|. |.+|-..+-.--  +.+...         
T Consensus       279 ~~~~VvFfErNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~---------  346 (928)
T PF04762_consen  279 DRHDVVFFERNGL-RHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFS---------  346 (928)
T ss_pred             CCcEEEEEecCCc-EeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEcc---------
Confidence             345666664322 11112222  355689999999999 6777766554 999987765422  222211         


Q ss_pred             eecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEec
Q 012712          202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN  280 (458)
Q Consensus       202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~  280 (458)
                      ....+..+.|+|..+..|...+.+|.+..++..-...                          .+-...|+.. .+++..
T Consensus       347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~--------------------------~s~~~~~~D~g~vaVID  400 (928)
T PF04762_consen  347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS--------------------------RSPGSSPNDNGTVAVID  400 (928)
T ss_pred             CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE--------------------------ecCCCCccCceEEEEEe
Confidence            1223455999998888888888888887776642110                          0001122222 334444


Q ss_pred             CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712          281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS  360 (458)
Q Consensus       281 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~  360 (458)
                      +.++.+-.++....+.++                                 ....+.-.   ..|..++| ++++..+++
T Consensus       401 G~~lllTpf~~a~VPPPM---------------------------------s~~~l~~~---~~v~~vaf-~~~~~~~av  443 (928)
T PF04762_consen  401 GNKLLLTPFRRAVVPPPM---------------------------------SSYELELP---SPVNDVAF-SPSNSRFAV  443 (928)
T ss_pred             CCeEEEecccccCCCchH---------------------------------hceEEcCC---CCcEEEEE-eCCCCeEEE
Confidence            446777777654332221                                 11222222   14889998 898888888


Q ss_pred             ecCCCeEEEEEecCCeEE--------EEee----------cCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcccc
Q 012712          361 GSDCGRIFIWKKKGGELI--------RVIE----------ADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADR  419 (458)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~--------~~~~----------~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~  419 (458)
                      -..||.|.+|........        ..+.          .....+..++|..+...++....+   ..+.+++....+.
T Consensus       444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  523 (928)
T PF04762_consen  444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN  523 (928)
T ss_pred             EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence            899999999986432211        1111          123457888998888776666554   6788888743321


Q ss_pred             c----ccccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712          420 A----TLPTNIEQVCFSIYSADYWWSKSQNFSCSILL  452 (458)
Q Consensus       420 ~----~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~  452 (458)
                      .    ......+.+..+...++...++....||.+..
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~  560 (928)
T PF04762_consen  524 SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQ  560 (928)
T ss_pred             ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence            1    22222334555556666654566677887764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1.2e-11  Score=106.63  Aligned_cols=191  Identities=10%  Similarity=0.120  Sum_probs=142.5

Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE------CCC-------------CCcEEEEecC
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI------DPR-------------NANLFAVAGS  224 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~-------------~~~~l~~~~~  224 (458)
                      .+++....||.+++||...++..+.+......       .+...+..|      +|.             +...++-|..
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~-------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASL-------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhc-------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            67899999999999999988877666532211       111222222      221             2347888999


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCc
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPV  303 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~  303 (458)
                      .|.|.+|++..++....             .....|.+.|.++.++.+-..|.+++.+ .+..|+....           
T Consensus        79 ~g~v~~ys~~~g~it~~-------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-----------  134 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAK-------------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-----------  134 (541)
T ss_pred             CccEEEEEecCCeEEEE-------------EecCCCCCcceeeecccccCceEecCCceeEEEEecccc-----------
Confidence            99999999998875322             2235688999999999998889888855 7999998773           


Q ss_pred             cccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712          304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  383 (458)
                                                 ...+.+.....  .+.+++. +|||+.+++++  ++|.+||+++.+.+.++.+
T Consensus       135 ---------------------------~~~~~~~~~~~--~~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftg  182 (541)
T KOG4547|consen  135 ---------------------------VIIRIWKEQKP--LVSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTG  182 (541)
T ss_pred             ---------------------------eeeeeeccCCC--ccceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecC
Confidence                                       34445554444  3778887 99999999886  7899999999999999999


Q ss_pred             CCceeeEEEecCC-----CCeEE-EeecCCcEEEecCCcc
Q 012712          384 DRHVVNCIEPHPH-----STVLA-SSGIESDIKILTPNAA  417 (458)
Q Consensus       384 ~~~~v~~~~~s~~-----~~~l~-s~~~d~~i~iw~~~~~  417 (458)
                      |.++|++++|-.+     |.++. +...+..+.+|-+...
T Consensus       183 h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  183 HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             CCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            9999999999876     56555 4455677888877653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.45  E-value=1.2e-11  Score=97.21  Aligned_cols=206  Identities=13%  Similarity=0.025  Sum_probs=141.9

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCcceee-eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      -.++.|++.+..++++..+|.+.+-+........ +..+.|.-+++-..|+.. +.+++.+|+.|+.+..||++.++...
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCccee
Confidence            4577889999999999999998855544433322 234789999999999874 56789999999999999998554433


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      -...+-|...|.+|.-+|..+..+++|+.|-.|++||.+. ++++..-.           ..+.|..+..+|.....++.
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-----------v~GGVWRi~~~p~~~~~lL~  271 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-----------VGGGVWRIKHHPEIFHRLLA  271 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-----------cccceEEEEecchhhhHHHH
Confidence            3335568999999999998888999999999999999984 44443322           33579999999974334444


Q ss_pred             ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEE-EEEccC
Q 012712          222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIY-LFTQDM  291 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~-i~~~~~  291 (458)
                      ++.-.-.++-+.........          ........|.+-...-.|.....+|++++  +..++ +|-.-+
T Consensus       272 ~CMh~G~ki~~~~~~~~e~~----------~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  272 ACMHNGAKILDSSDKVLEFQ----------IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             HHHhcCceEEEecccccchh----------eeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            44444477777765542211          11223334555555556655556788876  44544 775443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.45  E-value=6.1e-10  Score=93.89  Aligned_cols=225  Identities=15%  Similarity=0.101  Sum_probs=149.4

Q ss_pred             CCCCCeEEEeeCCCcEEEEEcccccccccccc-ccccccccceEEeeeeeEeecCCCceEEEE-Eec-CCCEEEEecCCC
Q 012712            7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFA-LRRRASEDLVLRLGIYAKLDKHRGCVNTVS-FNT-DGDILISGSDDR   83 (458)
Q Consensus         7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~-~~~~l~s~~~d~   83 (458)
                      +.||++++-.- .|.|.++|.++..+.+-... ++.. .          ......-.+..-+. |++ +|.+++..|. |
T Consensus       275 nsDGkrIvFq~-~GdIylydP~td~lekldI~lpl~r-k----------~k~~k~~~pskyledfa~~~Gd~ia~VSR-G  341 (668)
T COG4946         275 NSDGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDR-K----------KKQPKFVNPSKYLEDFAVVNGDYIALVSR-G  341 (668)
T ss_pred             CCCCcEEEEec-CCcEEEeCCCcCcceeeecCCcccc-c----------cccccccCHHHhhhhhccCCCcEEEEEec-C
Confidence            56788866544 78899999997554321000 0000 0          00000111111121 333 6888888876 6


Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC-cEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG-QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      ...|.+...+-.++   -+|...|.-..+..  +++-++.|..|| .+-++|..+++...   +...-+.|.++..+|+|
T Consensus       342 kaFi~~~~~~~~iq---v~~~~~VrY~r~~~--~~e~~vigt~dgD~l~iyd~~~~e~kr---~e~~lg~I~av~vs~dG  413 (668)
T COG4946         342 KAFIMRPWDGYSIQ---VGKKGGVRYRRIQV--DPEGDVIGTNDGDKLGIYDKDGGEVKR---IEKDLGNIEAVKVSPDG  413 (668)
T ss_pred             cEEEECCCCCeeEE---cCCCCceEEEEEcc--CCcceEEeccCCceEEEEecCCceEEE---eeCCccceEEEEEcCCC
Confidence            78888766554432   37888899988888  888899999999 89999998776433   45566889999999999


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC----eEEEEecCCCcc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKW  238 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~  238 (458)
                       +.++.+-....+.+.|+.++.....-+.          ...-|+.+.|+|+ ++++|-+--+|    .|+++|+..++.
T Consensus       414 -K~~vvaNdr~el~vididngnv~~idkS----------~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         414 -KKVVVANDRFELWVIDIDNGNVRLIDKS----------EYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             -cEEEEEcCceEEEEEEecCCCeeEeccc----------ccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeE
Confidence             5677777788899999999975433221          3345899999997 78998876655    589999998764


Q ss_pred             CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712          239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      ...                ......=.+-+|.|++++|..-+
T Consensus       482 y~v----------------TT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         482 YDV----------------TTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEe----------------cCCcccccCcccCCCCcEEEEEe
Confidence            221                01122234567899999776544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.45  E-value=9.5e-13  Score=127.03  Aligned_cols=187  Identities=18%  Similarity=0.240  Sum_probs=147.4

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV   85 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   85 (458)
                      -.|...+-+||+.||.|++|....++.+-.                  . +-.|. ..|+.+.|+.+|+.+..+..||.+
T Consensus      2216 sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~------------------~-rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l 2275 (2439)
T KOG1064|consen 2216 SHPSDPYYLTGSQDGSVRMFEWGHGQQVVC------------------F-RTAGN-SRVTRSRFNHQGNKFGIVDGDGDL 2275 (2439)
T ss_pred             CCCCCceEEecCCCceEEEEeccCCCeEEE------------------e-eccCc-chhhhhhhcccCCceeeeccCCce
Confidence            356667889999999999999997765522                  1 11233 889999999999999999999999


Q ss_pred             EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      .+|... .++.... +.|.....+..|.    +..+++++.   ++.+.+||..-....... ...|.+.++++++-|..
T Consensus      2276 ~l~q~~-pk~~~s~-qchnk~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2276 SLWQAS-PKPYTSW-QCHNKALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred             eecccC-Ccceecc-ccCCccccceeee----ehhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcc
Confidence            999977 4444444 6788889999996    367777654   688999997544332222 37899999999999998


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                       ++|++|+.+|.|++||++..+....++               .    ++ . ..+|++|+..|.++||++.....+..
T Consensus      2349 -qllisggr~G~v~l~D~rqrql~h~~~---------------~----~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2349 -QLLISGGRKGEVCLFDIRQRQLRHTFQ---------------A----LD-T-REYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred             -eEEEecCCcCcEEEeehHHHHHHHHhh---------------h----hh-h-hheeeccCcccceEEEEccccchhhc
Confidence             899999999999999999988776654               1    33 2 57999999999999999998766554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.44  E-value=1.3e-09  Score=105.60  Aligned_cols=327  Identities=14%  Similarity=0.158  Sum_probs=194.8

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEE----ECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILW----DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      ..+.|.++.+-++...|+.+..+|.|.+.    +..+...  .....-...|.+++|||  |++.|+....++++.+-.-
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~  149 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTR  149 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEec
Confidence            35789999999999989999999999999    5443332  22133467899999999  9999999988888766421


Q ss_pred             ----cc---------c--cce-------ee------------------------eeccccccceEEEEEcCCCCeEEEEe
Q 012712          136 ----LE---------R--GGV-------ET------------------------KLLGKHQGRAHKLAIEPGSPHVFYTC  169 (458)
Q Consensus       136 ----~~---------~--~~~-------~~------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~  169 (458)
                          -.         +  +.+       .+                        ..+. +...-..++|-.|| .++++.
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVs  227 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVS  227 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEE
Confidence                00         0  000       00                        0011 23345678999999 566665


Q ss_pred             cC---C---CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---CCeEEEEecCCCccCC
Q 012712          170 GE---D---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---DEYTRLYDIRKYKWDG  240 (458)
Q Consensus       170 ~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~  240 (458)
                      +.   .   ..+++|+-+ |.......  +.        .+--.+++|-|. |++||+.-.   ...|.+|.-+..+. +
T Consensus       228 s~~~~~~~~R~iRVy~Re-G~L~stSE--~v--------~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfErNGLrh-g  294 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSRE-GELQSTSE--PV--------DGLEGALSWRPS-GNLIASSQRLPDRHDVVFFERNGLRH-G  294 (928)
T ss_pred             EEEcCCCceeEEEEECCC-ceEEeccc--cC--------CCccCCccCCCC-CCEEEEEEEcCCCcEEEEEecCCcEe-e
Confidence            53   2   579999855 54332222  11        111257899998 788887754   34566666544331 1


Q ss_pred             CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                      .+.+           ........|..+.|++|+..||....+.|.+|-..+-.-.                         
T Consensus       295 eF~l-----------~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWY-------------------------  338 (928)
T PF04762_consen  295 EFTL-----------RFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWY-------------------------  338 (928)
T ss_pred             eEec-----------CCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEE-------------------------
Confidence            1111           1123456789999999999999988888999988764211                         


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEe----cC----------------CeEE-
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKK----KG----------------GELI-  378 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~----~~----------------~~~~-  378 (458)
                                 ..+.+.-.... .+..+.| +|.. ..|...+.+|.+..++.    ..                |..+ 
T Consensus       339 -----------LKqei~~~~~~-~~~~~~W-dpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~ll  405 (928)
T PF04762_consen  339 -----------LKQEIRFSSSE-SVNFVKW-DPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLL  405 (928)
T ss_pred             -----------EEEEEEccCCC-CCCceEE-CCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEE
Confidence                       01111100000 1222444 4432 23334443344433322    10                1110 


Q ss_pred             ---------------EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc---------cc----------cc
Q 012712          379 ---------------RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA---------TL----------PT  424 (458)
Q Consensus       379 ---------------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~----------~~  424 (458)
                                     ..+. -..+|.+++|++++..+|+-..||.|.+|........         .+          ..
T Consensus       406 lTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (928)
T PF04762_consen  406 LTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSEL  484 (928)
T ss_pred             EecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccc
Confidence                           1111 2457999999999988999999999999985433211         11          11


Q ss_pred             ccccEEEEEEecCCcEEEeeecC---CceEEEEE
Q 012712          425 NIEQVCFSIYSADYWWSKSQNFS---CSILLFEW  455 (458)
Q Consensus       425 ~~~~v~~~~~s~d~~~l~s~~~d---~~i~~w~~  455 (458)
                      ....+..++|..+...++....+   ..+.+++.
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  518 (928)
T PF04762_consen  485 PLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI  518 (928)
T ss_pred             ccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence            23347888998888776665554   55777665

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=1.1e-12  Score=112.23  Aligned_cols=176  Identities=20%  Similarity=0.263  Sum_probs=129.2

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc-------ceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      .+..+.||+..|+.++--.+.+-+++++.|++|++|.++..       .+..++ ..|+.+|.++.|..  +.+.++++ 
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~--~lr~i~Sc-  802 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLA--DLRSIASC-  802 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeee--ccceeeec-
Confidence            34567899999999987777788999999999999998632       233444 78999999999998  88888766 


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCC-CCeEEEEe-cCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                       ||.|.+||.--++.+.........+.+..+..-|+ ...+++++ +...+|+++|.+..+....++......     ..
T Consensus       803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~-----Pn  876 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG-----PN  876 (1034)
T ss_pred             -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC-----Cc
Confidence             68899999877665542212222233444444444 22444444 788999999999988776665432211     33


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      .-+.+++..|. |+.++++-.+|.|.+.|.++++..
T Consensus       877 a~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  877 ALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             hheeEEEeccC-cchhhHHhcCCcEEEEecCCCcee
Confidence            45789999997 799999999999999999998743

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.40  E-value=5.7e-12  Score=111.45  Aligned_cols=291  Identities=14%  Similarity=0.151  Sum_probs=185.6

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      .+++.++..+|.|+-+|.++.-| +.+-|++..-.....+ .--.-.|-.+.|+|+....+-++......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788899999999999998877 5666776543323331 112335677889885444454444444556689886543


Q ss_pred             c-eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          140 G-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       140 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      . .....+.+|...|+.+.|+|+.+.++++++.|-.+..||++......-....         -......+.|+-.+++.
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~---------w~s~asqVkwnyk~p~v  173 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS---------WRSAASQVKWNYKDPNV  173 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec---------ccccCceeeecccCcch
Confidence            2 2334577899999999999999999999999999999999987643211110         12245678898876666


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEecCCcEEEEEccCCCCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPN  296 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~  296 (458)
                      +++ +....|++||.+.+.              .+.....+|...|..+.|+.-  ++.+-+..+++++.||........
T Consensus       174 las-shg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~  238 (1081)
T KOG0309|consen  174 LAS-SHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES  238 (1081)
T ss_pred             hhh-ccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence            654 456679999999875              233344456777888888753  445555557799999987643222


Q ss_pred             CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc--EEE---------EecCCC
Q 012712          297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVV---------SGSDCG  365 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~l~---------~~~~dg  365 (458)
                      ...                                    . ....  .+..-.+ -|=|+  ++.         .-.-+.
T Consensus       239 ~~~------------------------------------v-tt~~--piw~~r~-~Pfg~g~~~mp~~G~n~v~~~~c~n  278 (1081)
T KOG0309|consen  239 KRT------------------------------------V-TTNF--PIWRGRY-LPFGEGYCIMPMVGGNMVPQLRCEN  278 (1081)
T ss_pred             cee------------------------------------c-cccC--cceeccc-cccCceeEeccccCCeeeeeccccc
Confidence            110                                    0 0000  1222222 23221  111         111122


Q ss_pred             eEEEEEecC-CeEEEEeecCCceeeEEEecCCC----------CeEEEeecCCcEEEecCCc
Q 012712          366 RIFIWKKKG-GELIRVIEADRHVVNCIEPHPHS----------TVLASSGIESDIKILTPNA  416 (458)
Q Consensus       366 ~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~d~~i~iw~~~~  416 (458)
                      .-..|+..+ .+++.++.||...|....|-..+          -.|+|-+.|.++++|-+.+
T Consensus       279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            223344333 36788999999988877774322          1699999999999998875

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.38  E-value=3.1e-11  Score=93.38  Aligned_cols=201  Identities=13%  Similarity=0.093  Sum_probs=125.5

Q ss_pred             eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC
Q 012712           12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK   91 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~   91 (458)
                      .|+++..++.+......++.++..         .+...+....+.+..|+++-.+-+.+--++.++++..||.+.+++.+
T Consensus        49 ~lf~~e~~~~~ss~g~~r~~~~~~---------~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~  119 (319)
T KOG4714|consen   49 ILFTGETSSQIISLGKGRGRCISL---------WERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTD  119 (319)
T ss_pred             eeecccchhheeeeccceEEEech---------hhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEech
Confidence            456666666666655555444422         11112234455566666655555555567789999999999999977


Q ss_pred             Cccee-eeeccCCCcceeEEEEccCCCCeEEEEEcC-----CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712           92 TERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV  165 (458)
Q Consensus        92 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  165 (458)
                      .-..+ .++...|.+. .+.++..  .++.+.++.-     -+..+.|++...+.....  ......|.+++-+|...++
T Consensus       120 ~~~~~~~~i~~~~~~~-as~~~~~--~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~hp~qq~~  194 (319)
T KOG4714|consen  120 KDLALMSRIPSIHSGS-ASRKICR--HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--KKALDAVTALCSHPAQQHL  194 (319)
T ss_pred             HHHhhhhhcccccccc-cccceee--cccEEecCCcceEeeccceeeeccccccccccc--ccccccchhhhCCcccccE
Confidence            52211 1111112211 1222333  4444444332     234566666544433221  1122349999999988789


Q ss_pred             EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      +++|+.||.+.+||.+.......+...         +..++..+-|+|.++..|+++++||.+.-||..+
T Consensus       195 v~cgt~dg~~~l~d~rn~~~p~S~l~a---------hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  195 VCCGTDDGIVGLWDARNVAMPVSLLKA---------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEecCCCeEEEEEcccccchHHHHHH---------hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            999999999999999988544332211         5668999999999999999999999999999864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=8.9e-10  Score=97.98  Aligned_cols=208  Identities=13%  Similarity=0.122  Sum_probs=124.7

Q ss_pred             ceEEEEEcCCCCeEEEEecC---CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC--C
Q 012712          152 RAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--E  226 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g  226 (458)
                      ......|+|++..+++..+.   +..|.++|+.+++......           .........|+||+..++++.+.+  .
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-----------~~g~~~~~~~SPDG~~la~~~~~~g~~  257 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-----------SQGMLVVSDVSKDGSKLLLTMAPKGQP  257 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-----------CCCcEEeeEECCCCCEEEEEEccCCCc
Confidence            67789999999643443332   3569999998887655433           122345678999855555555444  4


Q ss_pred             eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEccCCCCCCCCCCCC
Q 012712          227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~~~~~~~~~~~~~~  302 (458)
                      .|+++|+.+++...               + ...........|+|||+.|+..++.    .|+++++.++....      
T Consensus       258 ~Iy~~dl~~g~~~~---------------L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r------  315 (419)
T PRK04043        258 DIYLYDTNTKTLTQ---------------I-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ------  315 (419)
T ss_pred             EEEEEECCCCcEEE---------------c-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe------
Confidence            67788877654211               1 1111223345799999988877643    48888877542100      


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---------CeEEEEEec
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---------GRIFIWKKK  373 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~  373 (458)
                                                     ..+.+..      ...| +|||++|+.....         ..|++.|+.
T Consensus       316 -------------------------------lt~~g~~------~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~  357 (419)
T PRK04043        316 -------------------------------VVFHGKN------NSSV-STYKNYIVYSSRETNNEFGKNTFNLYLISTN  357 (419)
T ss_pred             -------------------------------CccCCCc------CceE-CCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence                                           0011111      1256 9999988865543         368888987


Q ss_pred             CCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcccccccccccccEEEE
Q 012712          374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQVCFS  432 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~v~~~  432 (458)
                      +++. +.+... .......|+|||+.|+....+   ..|.+.++.......+....+.+...
T Consensus       358 ~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~~p  417 (419)
T PRK04043        358 SDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSI  417 (419)
T ss_pred             CCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccCCC
Confidence            7764 344332 233468999999988766543   24667777766555554444444433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.35  E-value=3.6e-10  Score=88.05  Aligned_cols=244  Identities=12%  Similarity=-0.015  Sum_probs=161.5

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILW   88 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iw   88 (458)
                      -..||.|+.-|...+|...+.+...+                    ....|...|+-+.=..| .-.+..++.|.++++.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~--------------------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~  143 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLY--------------------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM  143 (344)
T ss_pred             ccEEEeccccceeeeecccCccccee--------------------eecccccchhhhhhhcccccceeeccCCcceeEE
Confidence            34688898999999999987665422                    23334443332221111 2235567889999999


Q ss_pred             ECCCcceeeeeccCCCc--ceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee-eccccccceEEEEEcCCCCeE
Q 012712           89 DWKTERVKLSFHSGHND--NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQGRAHKLAIEPGSPHV  165 (458)
Q Consensus        89 d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~  165 (458)
                      +++.+......   |..  .+.++.+++  |++++++.+....|-.|.+......... .....++.-.+..|+... ..
T Consensus       144 ~~~~~s~~~~~---h~~~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~  217 (344)
T KOG4532|consen  144 VVSGDSNKFAV---HNQNLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQ  217 (344)
T ss_pred             EEecCccccee---eccccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ce
Confidence            88765543333   333  388999999  9999999999999999998765543322 344445556788899887 68


Q ss_pred             EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC-cEEEEecCCCeEEEEecCCCccCCCccC
Q 012712          166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDF  244 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~  244 (458)
                      ++++..||++.+||++.............    .| +.+.+..+.|++.+. .+|+..-.-+.+.+.|+++.+..+....
T Consensus       218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstr----p~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  218 FAVVFQDGTCAIYDVRNMATPMAEISSTR----PH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             EEEEecCCcEEEEEecccccchhhhcccC----CC-CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            99999999999999987654433222111    11 667899999997532 3455555567899999998864332211


Q ss_pred             CCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712          245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~  291 (458)
                      ..       .....+....|..-.|+.++.-+.+.++..+.-|++..
T Consensus       293 ~~-------d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s  332 (344)
T KOG4532|consen  293 PD-------DVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS  332 (344)
T ss_pred             Cc-------cccccccccccccccccCCCcccccccchhhheeeccc
Confidence            11       11122223347778888888877777777777787765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.34  E-value=1.3e-09  Score=107.73  Aligned_cols=274  Identities=11%  Similarity=0.071  Sum_probs=155.0

Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC-Cc---ceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-RN---YMTVVNLNAIAIDPRNANLFAVAGSDEYTR  229 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  229 (458)
                      ..+++++.+..++++-+.++.|+++|... .....+........ .+   ...-.....++++++++.++++-..++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788876547788888889999999764 33222221000000 00   001224678999987433344444567899


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCcc-ccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccc
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR  306 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~  306 (458)
                      .+|..++........+........... ....-.....++++| ++.++++.. ++.|++||..++....          
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~----------  719 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV----------  719 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE----------
Confidence            999876542110000000000000000 000012346899999 455555555 4579999986642110          


Q ss_pred             ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCCeEEEEeec--
Q 012712          307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGELIRVIEA--  383 (458)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~--  383 (458)
                           +..++.....  .     .... ......   ....+++ +|++++|+ +-+.+++|++||+.++.......+  
T Consensus       720 -----~~G~G~~~~~--~-----g~~~-~~~~~~---~P~GIav-spdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        720 -----FSGDGYERNL--N-----GSSG-TSTSFA---QPSGISL-SPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             -----EecCCccccC--C-----CCcc-cccccc---CccEEEE-eCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence                 0000000000  0     0000 000001   2467887 99998554 556679999999987653211100  


Q ss_pred             -----------C--------CceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc--------------ccccEE
Q 012712          384 -----------D--------RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT--------------NIEQVC  430 (458)
Q Consensus       384 -----------~--------~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--------------~~~~v~  430 (458)
                                 +        -.....++++++|+++++-..+++|++||..++....+.+              ......
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~  862 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA  862 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence                       0        1124689999999988888899999999998776543322              122477


Q ss_pred             EEEEecCCcEEEeeecCCceEEEEE
Q 012712          431 FSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       431 ~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .++++++|+++++-+.++.|++|+.
T Consensus       863 GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        863 GLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEEC
Confidence            8999999998888889999999985

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.33  E-value=6e-11  Score=97.63  Aligned_cols=167  Identities=12%  Similarity=0.114  Sum_probs=120.4

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      ..+.+++.+++||.+..+....+.++......               .++.-...+..-...|+.+..+......-.++.
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---------------~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG---------------AKLLDVSCVPKRPTAISFIREDTSVLVADKAGD  130 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCc---------------ceeeeEeecccCcceeeeeeccceEEEEeecCC
Confidence            35678999999999998888778887743221               111111222223344444444433333334556


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      ...+.+|....+.....  .+|-.-++.++|+|  |+++|+++..|..|++-.+.....+... .-+|+.-|..++.-++
T Consensus       131 ~~~~di~s~~~~~~~~~--lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~~  205 (390)
T KOG3914|consen  131 VYSFDILSADSGRCEPI--LGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTDN  205 (390)
T ss_pred             ceeeeeecccccCcchh--hhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeeccC
Confidence            66778888776555444  49999999999999  9999999999999999887665554432 5579999999999987


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceee
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFT  190 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  190 (458)
                      .  .|++++.|++|++||+++++.+..+.
T Consensus       206 ~--~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  206 Y--LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             c--eeeecCCCCcEEEEecccCCcccccc
Confidence            5  58999999999999999999876554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.32  E-value=2.6e-09  Score=105.66  Aligned_cols=288  Identities=11%  Similarity=0.059  Sum_probs=160.4

Q ss_pred             eEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc------------cccceEEEEEcCCCCeEEEEecCCCeE
Q 012712          108 FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------------HQGRAHKLAIEPGSPHVFYTCGEDGLV  175 (458)
Q Consensus       108 ~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~s~~~dg~i  175 (458)
                      ..+++++. ++..+++-..++.|+++|... .......-.+            .-.....+++++++..++++-...+.|
T Consensus       571 ~gvavd~~-~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLL-NNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECC-CCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            35777761 355667777788999999754 3222110101            112357899999874455555556789


Q ss_pred             EEEeCCCCCccceeeecccCC--CCc-----ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712          176 QHFDLRTGAATELFTCRPIDD--RRN-----YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~~--~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      +.+|+.++.. ..+.......  ..+     ...-.....++++|+++.++++...++.|++||..++.......-+...
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999877643 2221110000  000     0001234689999965777888888899999998765431100000000


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEe-c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN  326 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (458)
                      .... .......-.....++++|++..|..+ . ++.|++||+.++.........+.        +. .  .+  ....+
T Consensus       728 ~~~g-~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~--------~~-~--~l--~~fG~  793 (1057)
T PLN02919        728 NLNG-SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT--------FS-D--NL--FKFGD  793 (1057)
T ss_pred             cCCC-CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc--------cC-c--cc--ccccC
Confidence            0000 00000112346789999999854444 3 45899999876431100000000        00 0  00  00000


Q ss_pred             cccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee-------------cCCceeeEEEe
Q 012712          327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-------------ADRHVVNCIEP  393 (458)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~  393 (458)
                      .. +......  ..   ...++++ +++|+.+++-..+++|++||..++.......             +.-.....+++
T Consensus       794 ~d-G~g~~~~--l~---~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav  866 (1057)
T PLN02919        794 HD-GVGSEVL--LQ---HPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL  866 (1057)
T ss_pred             CC-Cchhhhh--cc---CCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence            00 0000000  01   1356777 9999988888889999999998776553221             11124778999


Q ss_pred             cCCCCeEEEeecCCcEEEecCCcccc
Q 012712          394 HPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       394 s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      +++|+++++-+.+++|++|++.+++.
T Consensus       867 d~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        867 GENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999988888999999999987643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.6e-09  Score=96.43  Aligned_cols=181  Identities=17%  Similarity=0.069  Sum_probs=112.6

Q ss_pred             ceEEEEECCCCCcEEEEecC---CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-
Q 012712          205 NLNAIAIDPRNANLFAVAGS---DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-  280 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  280 (458)
                      ......|+|++...++..+.   +..|+++|+.+++..                ......+......|+|||+.|+... 
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~----------------~lt~~~g~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE----------------KIASSQGMLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE----------------EEecCCCcEEeeEECCCCCEEEEEEc
Confidence            45688999985433554332   356999999876521                1111234456678999998776543 


Q ss_pred             -CC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712          281 -DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY  357 (458)
Q Consensus       281 -~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~  357 (458)
                       ++  .|+++++.++.                                       .+.+..+...  .....| +|||+.
T Consensus       253 ~~g~~~Iy~~dl~~g~---------------------------------------~~~LT~~~~~--d~~p~~-SPDG~~  290 (419)
T PRK04043        253 PKGQPDIYLYDTNTKT---------------------------------------LTQITNYPGI--DVNGNF-VEDDKR  290 (419)
T ss_pred             cCCCcEEEEEECCCCc---------------------------------------EEEcccCCCc--cCccEE-CCCCCE
Confidence             22  58888876532                                       1222222211  123356 999998


Q ss_pred             EEEecCC-C--eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---------CcEEEecCCcccccccccc
Q 012712          358 VVSGSDC-G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---------SDIKILTPNAADRATLPTN  425 (458)
Q Consensus       358 l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~  425 (458)
                      |+..+.. +  .|++.|+.+++..+.... ..  ....|+|||+.|+.....         ..|.+.++++++...+...
T Consensus       291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~  367 (419)
T PRK04043        291 IVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN  367 (419)
T ss_pred             EEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence            8766532 3  688888877766443322 11  124899999988876543         3678888888876666554


Q ss_pred             cccEEEEEEecCCcEEEeeecC
Q 012712          426 IEQVCFSIYSADYWWSKSQNFS  447 (458)
Q Consensus       426 ~~~v~~~~~s~d~~~l~s~~~d  447 (458)
                       .......|||||+.++..+.+
T Consensus       368 -~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        368 -GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             -CCcCCeEECCCCCEEEEEEcc
Confidence             234468999999888765544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=1.9e-11  Score=118.38  Aligned_cols=220  Identities=14%  Similarity=0.205  Sum_probs=157.9

Q ss_pred             CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712          118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR  197 (458)
Q Consensus       118 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  197 (458)
                      ++.+..+..++...-|..+.....    +..+-..+.++.-+|..+ +.++|+.||.+++|....++.+..+...     
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~~~----~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~----- 2249 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASVM----IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTA----- 2249 (2439)
T ss_pred             cccCCcccCCccccceecccceeE----eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeecc-----
Confidence            344444455566555655443332    344556788888899884 6799999999999998888877666533     


Q ss_pred             CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712          198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV  277 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (458)
                          ....++.+.|+.+ |+.+..+..||.+.+|.....                +......|+.....+.|-.  ..++
T Consensus      2250 ----g~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q~~pk----------------~~~s~qchnk~~~Df~Fi~--s~~~ 2306 (2439)
T KOG1064|consen 2250 ----GNSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQASPK----------------PYTSWQCHNKALSDFRFIG--SLLA 2306 (2439)
T ss_pred             ----Ccchhhhhhhccc-CCceeeeccCCceeecccCCc----------------ceeccccCCccccceeeee--hhhh
Confidence                2357889999997 688889999999999998732                1223344566666666655  4555


Q ss_pred             Eec---CC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712          278 SYN---DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP  353 (458)
Q Consensus       278 ~~~---~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~  353 (458)
                      +.+   ++ .+.+||..-...                                   ...+.  ..|...  ++++++ -|
T Consensus      2307 tag~s~d~~n~~lwDtl~~~~-----------------------------------~s~v~--~~H~~g--aT~l~~-~P 2346 (2439)
T KOG1064|consen 2307 TAGRSSDNRNVCLWDTLLPPM-----------------------------------NSLVH--TCHDGG--ATVLAY-AP 2346 (2439)
T ss_pred             ccccCCCCCcccchhcccCcc-----------------------------------cceee--eecCCC--ceEEEE-cC
Confidence            544   33 699999654211                                   11222  567665  788888 99


Q ss_pred             CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       354 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      ..+.|++|+.+|.|++||+...++..+++.         +. ...++++|+..|.|+||++.....+
T Consensus      2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence            999999999999999999988777666653         44 6678999999999999999876443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=3.9e-11  Score=102.94  Aligned_cols=287  Identities=12%  Similarity=0.111  Sum_probs=187.0

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-----ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeE
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV  175 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  175 (458)
                      .+|+..|..++-..  +.+.+++++.|.+|++|.++...     ......++.|..+|.++.|-.+. +.++  +.||-|
T Consensus       732 ~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~gi  806 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDGGI  806 (1034)
T ss_pred             cCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--eccCcc
Confidence            78999999888776  78889999999999999987532     12334578899999999999887 3444  457889


Q ss_pred             EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712          176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN  255 (458)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  255 (458)
                      .+||.--+.....+...+.     +...+.|.|+.-- +..-.++.++...+|+++|.+..+........          
T Consensus       807 HlWDPFigr~Laq~~dapk-----~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc----------  870 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPK-----EGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVC----------  870 (1034)
T ss_pred             eeecccccchhHhhhcCcc-----cCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEec----------
Confidence            9999877776654432221     1122344444321 22234444578889999999988765432221          


Q ss_pred             cccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712          256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ  334 (458)
Q Consensus       256 ~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (458)
                      .....+..+++++..|.|..++.+- .|.|.+.|.++++....                                     
T Consensus       871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs-------------------------------------  913 (1034)
T KOG4190|consen  871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS-------------------------------------  913 (1034)
T ss_pred             cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc-------------------------------------
Confidence            1123456789999999999988775 77899999998653332                                     


Q ss_pred             eecCccceeeeeEEEEecCCCcEEEEecCCCeEEE-EEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI-WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       335 ~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                       +.....  ....++  .|..+.|+....|.++.+ |...++....+.+....+..-+.  .-|.-|+++...+.+.+|.
T Consensus       914 -wrpmec--dllqla--apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  914 -WRPMEC--DLLQLA--APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             -CCcccc--hhhhhc--CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence             222211  133343  467788888888899988 88777766555554333322111  2356677777777777875


Q ss_pred             CCcc-------cccccccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712          414 PNAA-------DRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILL  452 (458)
Q Consensus       414 ~~~~-------~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~  452 (458)
                      -...       .........+..++++--|-..-+..|...|.|.+
T Consensus       987 d~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  987 DSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             cchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            3321       11222334455778888787755557788887765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=3.3e-10  Score=94.71  Aligned_cols=215  Identities=11%  Similarity=0.052  Sum_probs=143.9

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC-CCe
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-DRR   84 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~   84 (458)
                      ++...+.+++++-||.++.|.-..-.                  -.+.+..+..|-+.|.+++.+-+|.++.|.+. |..
T Consensus        16 ~~tka~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs   77 (558)
T KOG0882|consen   16 FPTKAKFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS   77 (558)
T ss_pred             eeehhheEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence            34556789999999999999876211                  12445667889999999999999999999777 999


Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCC-eEEEE-EcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVT-CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      ++++|+++-..+.-+....-...-+...+| .+. ..|+. .-.+|.+.++|-....+.....-.-|..+|..+.++|.+
T Consensus        78 ~KvfDvEn~DminmiKL~~lPg~a~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   78 VKVFDVENFDMINMIKLVDLPGFAEWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             eeEEEeeccchhhhcccccCCCceEEecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence            999999876543222111111111222233 011 13333 335789999997766544434355699999999999998


Q ss_pred             CeEEEEecCCCeEEEEeCCCC-Cccc---eeeecccCCC-CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTG-AATE---LFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~-~~~~---~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                       ..+++....|.|.-|..+.. +...   .+.......+ .-........++.|+|+ +..+.+-+.|..|++++.++++
T Consensus       157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             -cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccch
Confidence             57888888999999987731 1100   0111000000 00013345789999998 7899999999999999999998


Q ss_pred             cCCC
Q 012712          238 WDGS  241 (458)
Q Consensus       238 ~~~~  241 (458)
                      +.+.
T Consensus       235 lvqe  238 (558)
T KOG0882|consen  235 LVQE  238 (558)
T ss_pred             hhhh
Confidence            6554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.24  E-value=3e-08  Score=81.32  Aligned_cols=241  Identities=17%  Similarity=0.142  Sum_probs=155.5

Q ss_pred             CCCCCC-CCCeEEEeeCCCc-EEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            3 DASNNN-NNKRARTSVDKAL-VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         3 ~~~~~~-~~~~l~~~~~d~~-i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      .+..+| .+..++.+-.-|+ ..+||..+|+.+...             .-..-+.|.||      -.||+||++|++.-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------~a~~gRHFyGH------g~fs~dG~~LytTE   69 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------WAPPGRHFYGH------GVFSPDGRLLYTTE   69 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------cCCCCCEEecC------EEEcCCCCEEEEec
Confidence            345566 5556777776665 669999999877441             11223456777      46999999999864


Q ss_pred             C-----CCeEEEEECC-CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC------------------CCcEEEeecc
Q 012712           81 D-----DRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA------------------DGQVRHAQIL  136 (458)
Q Consensus        81 ~-----d~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~------------------dg~i~vw~~~  136 (458)
                      .     .|.|-|||.. +-+.+.++ ..|.-.-..+.+.|  |++.|+.+..                  +-.+.+.|..
T Consensus        70 nd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~p--DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~  146 (305)
T PF07433_consen   70 NDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMP--DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR  146 (305)
T ss_pred             cccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcC--CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence            3     4899999998 44555666 56666677889999  9977777642                  1234556667


Q ss_pred             cccceeeeec--cccccceEEEEEcCCCCeEEEEecCCCe-------EEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          137 ERGGVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGEDGL-------VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       137 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      +++.+....+  ..|...|..+++.++| ..++..-..|.       |-+++  .++....+......   .......+-
T Consensus       147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~---~~~l~~Y~g  220 (305)
T PF07433_consen  147 SGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQ---WRRLNGYIG  220 (305)
T ss_pred             CCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHH---HHhhCCceE
Confidence            7776666556  4477889999999998 45444433331       23332  22222222221110   011334688


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF  287 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~  287 (458)
                      ++++++++....+++-..+.+.+||..++++.....                 -..+..++-.+++ ++++.+.+.+...
T Consensus       221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----------------l~D~cGva~~~~~-f~~ssG~G~~~~~  282 (305)
T PF07433_consen  221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----------------LPDACGVAPTDDG-FLVSSGQGQLIRL  282 (305)
T ss_pred             EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----------------cCceeeeeecCCc-eEEeCCCccEEEc
Confidence            999999854455666678899999999987654321                 2457778887777 7777777765444


Q ss_pred             Ec
Q 012712          288 TQ  289 (458)
Q Consensus       288 ~~  289 (458)
                      ..
T Consensus       283 ~~  284 (305)
T PF07433_consen  283 SP  284 (305)
T ss_pred             cC
Confidence            43

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.20  E-value=1.1e-09  Score=90.46  Aligned_cols=164  Identities=13%  Similarity=0.141  Sum_probs=112.8

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec--cCCCcceeEEEEccCCCCeEEEE---EcCCCcEEEeecccc
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVT---CAADGQVRHAQILER  138 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s---~~~dg~i~vw~~~~~  138 (458)
                      ...+..++++++||.+..+....++++........+.  ..-...-+++.|..  +......   ++....+.+|....+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~--~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR--EDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee--ccceEEEEeecCCceeeeeeccccc
Confidence            4455677888999998888877777765443211111  11222334444544  3333333   344555666666553


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      ...   ..-+|-..++.++++||+ +.++++..|..|++-.......+..+..       |  |..-|..++.-++  ..
T Consensus       143 ~~~---~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesfcl-------G--H~eFVS~isl~~~--~~  207 (390)
T KOG3914|consen  143 RCE---PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCL-------G--HKEFVSTISLTDN--YL  207 (390)
T ss_pred             Ccc---hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhcc-------c--cHhheeeeeeccC--ce
Confidence            332   267899999999999999 7899999999999988777666666543       2  4446889999874  57


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDF  244 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~  244 (458)
                      |++++.|+++++||+++++......+
T Consensus       208 LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  208 LLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             eeecCCCCcEEEEecccCCcccccch
Confidence            99999999999999999987755443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.20  E-value=5.5e-08  Score=87.13  Aligned_cols=317  Identities=12%  Similarity=0.098  Sum_probs=175.1

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecC-CCceE-EEEEecCCCEEEEecCCCeEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVN-TVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~-~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      +.++++++.+|.+.-+|.++|+.+-+.....    ..        ..+... ...+. .+..  ++..++.++.++.+.-
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~--------~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~a  134 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSE----KD--------GWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYA  134 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCC----cc--------cccccccccccccccEE--ECCEEEEEcCCCEEEE
Confidence            5677888889999999999998875411000    00        000000 00111 1122  3456777888999999


Q ss_pred             EECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc---eEEEEEcCCCCe
Q 012712           88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPH  164 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~  164 (458)
                      +|.++|+.+.+...  ...+.+   +|.-.+..++.+..++.+.-+|..+++.+...........   ..+-... ++  
T Consensus       135 ld~~tG~~~W~~~~--~~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~--  206 (394)
T PRK11138        135 LNAEDGEVAWQTKV--AGEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG--  206 (394)
T ss_pred             EECCCCCCcccccC--CCceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC--
Confidence            99999998777622  222222   1111334566677789999999999887765332211000   0011111 22  


Q ss_pred             EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC--CCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712          165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  242 (458)
                      .++.++.+|.+..+|.++++..............   .......+.-+|  . +..++.++.+|.+..+|..+++..-..
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~---~~~~~~~~~~sP~v~-~~~vy~~~~~g~l~ald~~tG~~~W~~  282 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT---EIDRLVDVDTTPVVV-GGVVYALAYNGNLVALDLRSGQIVWKR  282 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCcc---chhcccccCCCcEEE-CCEEEEEEcCCeEEEEECCCCCEEEee
Confidence            3566778899999999999876554321110000   000000111111  1 235666778899999999988643221


Q ss_pred             cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712          243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP  322 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (458)
                      .+                 .....+.. .++.+++...++.+..+|..+++......                       
T Consensus       283 ~~-----------------~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~-----------------------  321 (394)
T PRK11138        283 EY-----------------GSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQS-----------------------  321 (394)
T ss_pred             cC-----------------CCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEccc-----------------------
Confidence            11                 00111111 23445555557789999988764322210                       


Q ss_pred             CCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee-EEEecCCCCeEE
Q 012712          323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVLA  401 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~  401 (458)
                                  .+. ...   ..+...   .+.+|+.++.+|.++..|..+|+.+...+.....+. ...+  .+..|+
T Consensus       322 ------------~~~-~~~---~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~  380 (394)
T PRK11138        322 ------------DLL-HRL---LTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLL  380 (394)
T ss_pred             ------------ccC-CCc---ccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEE
Confidence                        000 000   111111   245677888999999999999998877764333232 2222  244677


Q ss_pred             EeecCCcEEEecC
Q 012712          402 SSGIESDIKILTP  414 (458)
Q Consensus       402 s~~~d~~i~iw~~  414 (458)
                      .++.||.|..++.
T Consensus       381 v~t~~G~l~~~~~  393 (394)
T PRK11138        381 IQARDGTVYAITR  393 (394)
T ss_pred             EEeCCceEEEEeC
Confidence            8899999887764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.20  E-value=6.5e-08  Score=86.69  Aligned_cols=310  Identities=10%  Similarity=-0.012  Sum_probs=174.8

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCccee------EEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF------QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL  146 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  146 (458)
                      +..+++++.++.+.-+|.++|+.+.+..........      .+.-.|..++..++.++.+|.+.-+|..+++.+.....
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            557777888899999999999887765322111110      00001111455677788899999999999988765433


Q ss_pred             cccccceEE-EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC-CCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          147 GKHQGRAHK-LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       147 ~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      .+   .+.+ .... ++  .++.+..++.+..+|.++++........... ...+  ...+    ...  + ..++.++.
T Consensus       149 ~~---~~~ssP~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~--~~sP----~v~--~-~~v~~~~~  213 (394)
T PRK11138        149 AG---EALSRPVVS-DG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG--ESAP----ATA--F-GGAIVGGD  213 (394)
T ss_pred             CC---ceecCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC--CCCC----EEE--C-CEEEEEcC
Confidence            32   1111 1111 33  4666778899999999999987666432100 0000  0011    111  1 25666778


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC---CCcEEEEecCCcEEEEEccCCCCCCCCCCC
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSS  301 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~  301 (458)
                      +|.+..+|..+++..-......+......        .....+.-+|   ++.+++...++.++.+|..+++......  
T Consensus       214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~--------~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~--  283 (394)
T PRK11138        214 NGRVSAVLMEQGQLIWQQRISQPTGATEI--------DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE--  283 (394)
T ss_pred             CCEEEEEEccCChhhheeccccCCCccch--------hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec--
Confidence            89999999988875433222111100000        0000111112   4555555557789999988764332210  


Q ss_pred             CccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712          302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI  381 (458)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  381 (458)
                                                        +..      ...+..   ++..|+.++.+|.++.+|..+|+.+-..
T Consensus       284 ----------------------------------~~~------~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        284 ----------------------------------YGS------VNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             ----------------------------------CCC------ccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence                                              000      011112   3557777788999999999999876543


Q ss_pred             ecCC-ceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc-cccccEEE-EEEecCCcEEEeeecCCceEEEE
Q 012712          382 EADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-TNIEQVCF-SIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       382 ~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~v~~-~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ..-. ....+...  .+.+|+.++.||.|.+.|..+++.+... -....+.+ ..+ . +..|+.++.||.|..++
T Consensus       321 ~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~-~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        321 SDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-A-DDKLLIQARDGTVYAIT  392 (394)
T ss_pred             cccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-E-CCEEEEEeCCceEEEEe
Confidence            2111 11222222  2456778899999999999998765322 12222322 222 2 34667789999988775

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.19  E-value=1.2e-08  Score=79.84  Aligned_cols=203  Identities=13%  Similarity=0.031  Sum_probs=134.3

Q ss_pred             EEEEec-----CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           66 TVSFNT-----DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        66 ~~~~s~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      .+.|-|     ...+||.|+..|...+|...+.+....+...|...|+-+.-.-. ....+..++.|.++++.++..+..
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd-~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCD-LKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcc-cccceeeccCCcceeEEEEecCcc
Confidence            455555     33589999999999999998777655554455554432221110 223466678888999988865543


Q ss_pred             eeeeecccccc--ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712          141 VETKLLGKHQG--RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       141 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      ...    .|..  .+.++++++++ .++++.+....|..|.+..... .......+.        ...-.+.+|+.. ..
T Consensus       151 ~~~----~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t--------~D~gF~~S~s~~-~~  216 (344)
T KOG4532|consen  151 KFA----VHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPT--------SDHGFYNSFSEN-DL  216 (344)
T ss_pred             cce----eeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEeccc--------CCCceeeeeccC-cc
Confidence            322    2332  37889999999 6888888888999998865432 222222221        122357789886 68


Q ss_pred             EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc---EEEEecCCcEEEEEccCCC
Q 012712          218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---LLVSYNDEFIYLFTQDMGL  293 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~i~i~~~~~~~  293 (458)
                      .+|++..||++.|||++.......          ........|.+.++.+.|++.|.   ++.+-.-+.+.+.|+++..
T Consensus       217 ~FAv~~Qdg~~~I~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  217 QFAVVFQDGTCAIYDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             eEEEEecCCcEEEEEecccccchh----------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            999999999999999998653211          01223445889999999998764   3333335579999998854

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.19  E-value=2.7e-10  Score=101.16  Aligned_cols=286  Identities=13%  Similarity=0.135  Sum_probs=181.8

Q ss_pred             CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc--cceEEEEEcCCC--CeEEEEecCCCeEEEE
Q 012712          103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ--GRAHKLAIEPGS--PHVFYTCGEDGLVQHF  178 (458)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~--~~~l~s~~~dg~i~iw  178 (458)
                      -.+.+.++..+|  .|+-++.++.-| +.+-|+........  .-.|.  -.+-.+.|+|..  +..+++.+ ...-.+|
T Consensus        23 v~~~~~a~si~p--~grdi~lAsr~g-l~i~dld~p~~ppr--~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiw   96 (1081)
T KOG0309|consen   23 VDGGFNAVSINP--SGRDIVLASRQG-LYIIDLDDPFTPPR--WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIW   96 (1081)
T ss_pred             ecCcccceeecc--ccchhhhhhhcC-eEEEeccCCCCCce--eeeccCcchhcceecccCCCCceeEEecC-cchhhhh
Confidence            356788889999  888899888766 55667766544333  11222  245567777653  34444444 3455688


Q ss_pred             eCCCCCccc-eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          179 DLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       179 d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      ++....... .+..        |.+...++.+-|+|+.+..+++++.|-.+..||+++...              +....
T Consensus        97 nlA~ss~~aIef~l--------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------------p~ys~  154 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVL--------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------------PFYST  154 (1081)
T ss_pred             hhhcCCccceEEEE--------ecCccceeccccCCCCCcceeeccccccceeeeccCCCc--------------ceeee
Confidence            886543322 1221        226668999999999999999999999999999998642              11112


Q ss_pred             cccccceeEEEeCC-CCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          258 GDEQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       258 ~~~~~~i~~~~~~~-~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                      ..-......++|+- ++..+|+.....+.+||.+.+                                     ..+...+
T Consensus       155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g-------------------------------------s~pl~s~  197 (1081)
T KOG0309|consen  155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG-------------------------------------STPLCSL  197 (1081)
T ss_pred             ecccccCceeeecccCcchhhhccCCceEEEeccCC-------------------------------------CcceEEe
Confidence            22234556788885 455666666678999999875                                     3456677


Q ss_pred             cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE-EEeecCCceeeEEEecCCCCeEEE--eecCCcEEEe-
Q 012712          337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLAS--SGIESDIKIL-  412 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s--~~~d~~i~iw-  412 (458)
                      ++|...  +..+.|.......+.+.+.||+|+.||.+..... .....-..+|.--.+-|-|+-...  --.+..+.++ 
T Consensus       198 K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~  275 (1081)
T KOG0309|consen  198 KGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLR  275 (1081)
T ss_pred             ccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecc
Confidence            776664  7777773334456778899999999998644222 111223345666666665542221  1112244444 


Q ss_pred             --------cCCcc--cccccccccccEEEEEEecCC----------cEEEeeecCCceEEEEE
Q 012712          413 --------TPNAA--DRATLPTNIEQVCFSIYSADY----------WWSKSQNFSCSILLFEW  455 (458)
Q Consensus       413 --------~~~~~--~~~~~~~~~~~v~~~~~s~d~----------~~l~s~~~d~~i~~w~~  455 (458)
                              +..++  ....+.+|...|....|...+          -.|+|=+.|..+++|..
T Consensus       276 c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  276 CENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             ccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence                    43333  223678888888777665433          46889999999999964

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.18  E-value=5.1e-08  Score=77.50  Aligned_cols=148  Identities=14%  Similarity=0.180  Sum_probs=91.6

Q ss_pred             EEEecCCCEEEEecCCCeEEEEECCCcc----eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           67 VSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        67 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      ++.+.+|+.||.- .|..|.|=..++.-    ......+.....-..++|+|  |+.+||.+...|+|+++|+.......
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSELFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccceeEE
Confidence            5677899988865 56778887655431    12233344445677899999  99999999999999999996533221


Q ss_pred             ee----eccccccceEEEEEcCCC-----CeEEEEecCCCeEEEEeCCCCC--c---cceeeecccCCCCcceeecceEE
Q 012712          143 TK----LLGKHQGRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRTGA--A---TELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       143 ~~----~~~~~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~--~---~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      ..    ........|..+.|.+..     ...|+.-..+|.++-|-+..+.  .   ...+.....       ....|.+
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~-------yp~Gi~~  152 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH-------YPHGINS  152 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-------CCCceeE
Confidence            10    011123456666665432     2357777788888877763321  1   112221110       2346899


Q ss_pred             EEECCCCCcEEEEecCC
Q 012712          209 IAIDPRNANLFAVAGSD  225 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~d  225 (458)
                      +.++|. .++|++|+..
T Consensus       153 ~vy~p~-h~LLlVgG~~  168 (282)
T PF15492_consen  153 AVYHPK-HRLLLVGGCE  168 (282)
T ss_pred             EEEcCC-CCEEEEeccC
Confidence            999997 5677766643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.16  E-value=3.6e-07  Score=76.18  Aligned_cols=226  Identities=18%  Similarity=0.180  Sum_probs=135.2

Q ss_pred             EEEEec-CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEc-cCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712           66 TVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIM-PFTDDRSIVTCAADGQVRHAQILERGGVET  143 (458)
Q Consensus        66 ~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  143 (458)
                      ++.|.+ ++.++++--..+.|..|+..+++.....  .. . ...+++. +  ++.++++. . +.+.++|..+++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~--~~-~-~~G~~~~~~--~g~l~v~~-~-~~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID--LP-G-PNGMAFDRP--DGRLYVAD-S-GGIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE--SS-S-EEEEEEECT--TSEEEEEE-T-TCEEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe--cC-C-CceEEEEcc--CCEEEEEE-c-CceEEEecCCCcEEEE
Confidence            577888 7777777777899999999887654322  11 2 6777777 5  65555554 4 3456668877654333


Q ss_pred             eec--cc-cccceEEEEEcCCCCeEEEEecCC--------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          144 KLL--GK-HQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       144 ~~~--~~-~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      ...  .. .....+.+++.|+| ++.++....        |.|..++.. ++......           .....+.++|+
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----------~~~~pNGi~~s  142 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----------GLGFPNGIAFS  142 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------EESSEEEEEEE
T ss_pred             eeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEec-----------CcccccceEEC
Confidence            222  12 34678899999999 565654432        456666665 33322222           22245778888


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712          213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG  292 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~  292 (458)
                      |++..++++-+..+.|..+++.....                        .+...                -.+.++.  
T Consensus       143 ~dg~~lyv~ds~~~~i~~~~~~~~~~------------------------~~~~~----------------~~~~~~~--  180 (246)
T PF08450_consen  143 PDGKTLYVADSFNGRIWRFDLDADGG------------------------ELSNR----------------RVFIDFP--  180 (246)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTC------------------------CEEEE----------------EEEEE-S--
T ss_pred             CcchheeecccccceeEEEecccccc------------------------ceeee----------------eeEEEcC--
Confidence            87433444556666777777653210                        00000                0001111  


Q ss_pred             CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                                                                   ....  ..-.+++ +.+|++.++....+.|.+++.
T Consensus       181 ---------------------------------------------~~~g--~pDG~~v-D~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  181 ---------------------------------------------GGPG--YPDGLAV-DSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             ---------------------------------------------SSSC--EEEEEEE-BTTS-EEEEEETTTEEEEEET
T ss_pred             ---------------------------------------------CCCc--CCCcceE-cCCCCEEEEEcCCCEEEEECC
Confidence                                                         1111  2456777 999998888778899999998


Q ss_pred             cCCeEEEEeecCCceeeEEEe-cCCCCeEEEe
Q 012712          373 KGGELIRVIEADRHVVNCIEP-HPHSTVLASS  403 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~  403 (458)
                      + |+.+..+......+++++| -++.+.|...
T Consensus       213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             T-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             C-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            6 9988888766568999999 4676655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.15  E-value=6.2e-10  Score=88.66  Aligned_cols=281  Identities=15%  Similarity=0.126  Sum_probs=167.1

Q ss_pred             CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee---eeccccc------------cceEEEEEcCC-CCeEE
Q 012712          103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---KLLGKHQ------------GRAHKLAIEPG-SPHVF  166 (458)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~---~~~~~~~------------~~v~~~~~~~~-~~~~l  166 (458)
                      ....|+++.|..  .|.+|++|...|.|.++.-........   ..+++|.            ..|..+.|..+ +...+
T Consensus        25 ead~ItaVefd~--tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          25 EADKITAVEFDE--TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             ccceeeEEEecc--ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            356799999998  899999999999999997654432111   1134443            34677777644 45567


Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCCcce-eecceEE------EEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM-TVVNLNA------IAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~------~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      +..+.|.+|++|.+......-.-...-...  -|. ..+++++      -..+..  ..++++. .  .+          
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~--~~~~~~g~~~s~~~l~lprls~h--d~iiaa~-p--~r----------  165 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDS--FHSPMGGPLTSTKELLLPRLSEH--DEIIAAK-P--CR----------  165 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccc--cccccCCCcCCHHHhhccccccc--ceEEEec-c--ce----------
Confidence            778899999999987654321111000000  000 0001110      011111  0111110 0  01          


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA  319 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (458)
                                     .....|...|.++.|+.|.+.+.++.+=.|.+|++.-......                      
T Consensus       166 ---------------vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFn----------------------  208 (460)
T COG5170         166 ---------------VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFN----------------------  208 (460)
T ss_pred             ---------------eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceE----------------------
Confidence                           1123467789999999999999988887999999875321111                      


Q ss_pred             cCCCCCCcccccCceeecCccce---eeeeEEEEecCCC-cEEEEecCCCeEEEEEecCCeE------EEE--e------
Q 012712          320 ASPSTANTDVRIAPQVYKGHRNC---VTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGEL------IRV--I------  381 (458)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------~~~--~------  381 (458)
                                   +..++.|...   .-|++..| +|.. ..+...+..|.|++-|++...+      +..  +      
T Consensus       209 -------------IVDiKP~nmeeLteVItSaeF-hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~  274 (460)
T COG5170         209 -------------IVDIKPHNMEELTEVITSAEF-HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVD  274 (460)
T ss_pred             -------------EEeccCccHHHHHHHHhhccc-CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccch
Confidence                         1122222211   12566676 7754 4555677789999999974221      111  1      


Q ss_pred             --ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc-c-ccccccc------------c---EEEEEEecCCcEEE
Q 012712          382 --EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-A-TLPTNIE------------Q---VCFSIYSADYWWSK  442 (458)
Q Consensus       382 --~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~-~-~~~~~~~------------~---v~~~~~s~d~~~l~  442 (458)
                        .+-...|..+.|+++|+++++-+. -+++|||+...+. + +++-|..            .   -..+.||.|.+.+.
T Consensus       275 ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~  353 (460)
T COG5170         275 FFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVL  353 (460)
T ss_pred             hHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccc
Confidence              112346889999999999987654 5899999876532 2 2222221            1   24578999999999


Q ss_pred             eeecCCceEEEE
Q 012712          443 SQNFSCSILLFE  454 (458)
Q Consensus       443 s~~~d~~i~~w~  454 (458)
                      +|+..+...++-
T Consensus       354 sgsy~NNfgiyp  365 (460)
T COG5170         354 SGSYSNNFGIYP  365 (460)
T ss_pred             ccccccceeeec
Confidence            999888776664

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2e-09  Score=90.21  Aligned_cols=270  Identities=11%  Similarity=0.072  Sum_probs=172.5

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeeeeccccccceEEEEEcCCCCeEEEEecC-CCeEEEEe
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFD  179 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd  179 (458)
                      -|...|+.+.-.   -.+++.+++.||.++.|.-..-.. .....+..|...+.+++.+-++ .++.+.+. |..++++|
T Consensus         7 mhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    7 MHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             cccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEE
Confidence            478888887765   578999999999999998654222 2223366788999999999998 77888777 99999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCC--cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      ++.-.....+.......         .-+...+|.+.  .+-++.-.++.+.++|-.....             ......
T Consensus        83 vEn~DminmiKL~~lPg---------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------------q~~~fk  140 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPG---------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------------QDGYFK  140 (558)
T ss_pred             eeccchhhhcccccCCC---------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------------ccceec
Confidence            98876665544322211         11222233111  2233344678999999876531             112344


Q ss_pred             cccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          258 GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                      .-|..+|..+.++|.+..+++.. .|-|.-|......+...-.   ..                    ........+..+
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~---l~--------------------~~~K~eTdLy~f  197 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTN---LN--------------------FELKHETDLYGF  197 (558)
T ss_pred             ccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccc---cc--------------------ccccccchhhcc
Confidence            55788999999999999888887 5579999877411110000   00                    000000011111


Q ss_pred             cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee--------------------------------cC
Q 012712          337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--------------------------------AD  384 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------~~  384 (458)
                      .-...  ...++.| +|+|..+.+-+.|..|++++..+|+.++.+.                                .|
T Consensus       198 ~K~Kt--~pts~Ef-sp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~  274 (558)
T KOG0882|consen  198 PKAKT--EPTSFEF-SPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH  274 (558)
T ss_pred             ccccc--CccceEE-ccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence            11112  2567887 9999999999999999999998887665432                                11


Q ss_pred             Cc-eeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc
Q 012712          385 RH-VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT  424 (458)
Q Consensus       385 ~~-~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~  424 (458)
                      .. .-+.+.|...|++|+.++-= -|++.++.++...++.+
T Consensus       275 ~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  275 GSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG  314 (558)
T ss_pred             cCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence            11 23556788888988877643 36777777765544433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.09  E-value=2.3e-07  Score=73.92  Aligned_cols=235  Identities=11%  Similarity=0.061  Sum_probs=129.3

Q ss_pred             EEEccCCCCeEEEEEcCCCcEEEeecccccc--eee-eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712          110 AKIMPFTDDRSIVTCAADGQVRHAQILERGG--VET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT  186 (458)
Q Consensus       110 ~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  186 (458)
                      ++.++  +|+.||..- |..|.+=..++.-.  +.+ ...+.....=+.++|+||+ .+|+.+...|+|+++|+......
T Consensus         3 ~~~~~--~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    3 LALSS--DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             eeecC--CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeE
Confidence            34455  777776654 45555554433211  111 1122233345789999999 78999999999999998864332


Q ss_pred             ceeeecccCCCCcceeecceEEEEECCCC-----CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712          187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ  261 (458)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (458)
                       .+...  ....+ .....|..|.|.+-.     ...|++-...|.++-|-+..+.....       .......+.....
T Consensus        79 -~I~p~--~~~~~-d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y-------~e~hsfsf~~~yp  147 (282)
T PF15492_consen   79 -VIPPA--MSFPG-DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY-------QENHSFSFSSHYP  147 (282)
T ss_pred             -EcCcc--cccCC-ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc-------eeeEEEEecccCC
Confidence             22211  11111 123356677675431     23566667788888777643211000       0001112233446


Q ss_pred             cceeEEEeCCCCcEEEEecCC-c-----------EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712          262 VGITGLAFSDQSELLVSYNDE-F-----------IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV  329 (458)
Q Consensus       262 ~~i~~~~~~~~~~~l~~~~~~-~-----------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (458)
                      ..|.++.++|..++|+.++.. .           +..|.+-+                                      
T Consensus       148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~--------------------------------------  189 (282)
T PF15492_consen  148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS--------------------------------------  189 (282)
T ss_pred             CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC--------------------------------------
Confidence            789999999998887776522 1           12222111                                      


Q ss_pred             ccCceeecCccceeeeeEEEEecCCCcEEEEecCCC------eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712          330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS  403 (458)
Q Consensus       330 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  403 (458)
                              +             +|..+.+. ..+|+      +..+|.+-+.+...........|..|..||||..||+.
T Consensus       190 --------~-------------~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i  247 (282)
T PF15492_consen  190 --------D-------------SPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI  247 (282)
T ss_pred             --------C-------------CCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence                    1             22222211 11111      12334433222222122245679999999999999999


Q ss_pred             ecCCcEEEecCCcccc
Q 012712          404 GIESDIKILTPNAADR  419 (458)
Q Consensus       404 ~~d~~i~iw~~~~~~~  419 (458)
                      ..+|.|.+|++.+-.+
T Consensus       248 h~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  248 HFSGSLSLWEIPSLRL  263 (282)
T ss_pred             EcCCeEEEEecCcchh
Confidence            9999999999987544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.08  E-value=7.3e-10  Score=62.11  Aligned_cols=38  Identities=29%  Similarity=0.653  Sum_probs=35.7

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      ++++++++|.+.|++|+|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.07  E-value=2.2e-09  Score=83.39  Aligned_cols=150  Identities=17%  Similarity=0.235  Sum_probs=98.2

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEEEEecC-----C
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSD-----D   82 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~-----d   82 (458)
                      .+..++++..||.+-+.+.+.  .. +...                 ++. .|.+. .+.++...++.+.++.-     -
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~--~~-~~~~-----------------~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~  158 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDK--DL-ALMS-----------------RIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQ  158 (319)
T ss_pred             cCCceEecCCCceEEEEechH--HH-hhhh-----------------hcccccccc-cccceeecccEEecCCcceEeec
Confidence            356799999999999999884  11 1000                 111 11111 12223334555544322     1


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      +..+.|+++..+....- ......|.+++-+|. ....+++|+.||.+.+||.+....+. ..+..|..++..+.|+|..
T Consensus       159 d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~-S~l~ahk~~i~eV~FHpk~  235 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPS-KKALDAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPV-SLLKAHKAEIWEVHFHPKN  235 (319)
T ss_pred             cceeeeccccccccccc-ccccccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchH-HHHHHhhhhhhheeccCCC
Confidence            34566766543332221 112234999999983 44566778889999999998874433 3478899999999999999


Q ss_pred             CeEEEEecCCCeEEEEeCCC
Q 012712          163 PHVFYTCGEDGLVQHFDLRT  182 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~  182 (458)
                      +..|+++++||.+..||..+
T Consensus       236 p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  236 PEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chheeEecCCCcEEEEcCCC
Confidence            88999999999999999774

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.01  E-value=9.5e-10  Score=61.64  Aligned_cols=39  Identities=23%  Similarity=0.425  Sum_probs=37.0

Q ss_pred             CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ++++.++++|.+.|++|+|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.00  E-value=1e-06  Score=72.52  Aligned_cols=240  Identities=13%  Similarity=0.149  Sum_probs=137.0

Q ss_pred             eeEEEEccCCCCeEEEEEcCCCc-EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec-----CCCeEEEEeC
Q 012712          107 VFQAKIMPFTDDRSIVTCAADGQ-VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-----EDGLVQHFDL  180 (458)
Q Consensus       107 i~~~~~~~~~~~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~  180 (458)
                      ...++.+|. ....++.+-.-|. ..+||..+++.........-..---.-.|+++| .+|++.-     ..|.|-+||.
T Consensus         7 gH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    7 GHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEEC
Confidence            345667772 3455566666554 667888887765542111111111236899999 5666653     3488999999


Q ss_pred             C-CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec------------------CCCeEEEEecCCCccCCC
Q 012712          181 R-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG------------------SDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       181 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~  241 (458)
                      + +-+.+..+...          ......+.+.|| +..|+++.                  .+..+.+.|..++++..+
T Consensus        85 ~~~~~ri~E~~s~----------GIGPHel~l~pD-G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q  153 (305)
T PF07433_consen   85 ARGYRRIGEFPSH----------GIGPHELLLMPD-GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ  153 (305)
T ss_pred             cCCcEEEeEecCC----------CcChhhEEEcCC-CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence            8 44444444432          223456778898 44555542                  223455556666655433


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC----c---EEEEEccCCCCCCCCCCCCccccccccccC
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE----F---IYLFTQDMGLGPNPPPSSPVSTRSEASEMG  313 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~----~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (458)
                      ..+.           ...|...|..+++.++|..++... .+    .   +.+++..........               
T Consensus       154 ~~Lp-----------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~---------------  207 (305)
T PF07433_consen  154 VELP-----------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPA---------------  207 (305)
T ss_pred             eecC-----------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccC---------------
Confidence            2211           133567899999999998776654 11    1   334433221100000               


Q ss_pred             CCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeecCCceeeEEE
Q 012712          314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIE  392 (458)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  392 (458)
                                        .......-.+  .+-++++ ++++.++++.+ ..|.+.+||..+++.+....-.  .+..++
T Consensus       208 ------------------p~~~~~~l~~--Y~gSIa~-~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva  264 (305)
T PF07433_consen  208 ------------------PEEQWRRLNG--YIGSIAA-DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVA  264 (305)
T ss_pred             ------------------ChHHHHhhCC--ceEEEEE-eCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeee
Confidence                              0000111112  4788998 99998776554 5678999999999988776543  356777


Q ss_pred             ecCCCCeEEEeecCCcEE
Q 012712          393 PHPHSTVLASSGIESDIK  410 (458)
Q Consensus       393 ~s~~~~~l~s~~~d~~i~  410 (458)
                      -.+++ ++++.+. |.+.
T Consensus       265 ~~~~~-f~~ssG~-G~~~  280 (305)
T PF07433_consen  265 PTDDG-FLVSSGQ-GQLI  280 (305)
T ss_pred             ecCCc-eEEeCCC-ccEE
Confidence            77766 6665553 4433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.99  E-value=1.7e-06  Score=72.20  Aligned_cols=217  Identities=17%  Similarity=0.164  Sum_probs=133.0

Q ss_pred             EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC-CCCCcEEEEecCCCeEEEEec
Q 012712          155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      +..|.+....++++-...+.|..|+..+++... +..           . ....+++. ++ + .++.+...+ +.++|.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-----------~-~~~G~~~~~~~-g-~l~v~~~~~-~~~~d~   67 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-----------P-GPNGMAFDRPD-G-RLYVADSGG-IAVVDP   67 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-----------S-SEEEEEEECTT-S-EEEEEETTC-EEEEET
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-----------C-CCceEEEEccC-C-EEEEEEcCc-eEEEec
Confidence            578888444788888788999999998875432 221           1 25677777 54 4 444455544 566688


Q ss_pred             CCCccCCCccCCCCCCCcCCCccc-cc-cccceeEEEeCCCCcEEEEecCC---------cEEEEEccCCCCCCCCCCCC
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLI-GD-EQVGITGLAFSDQSELLVSYNDE---------FIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~~---------~i~i~~~~~~~~~~~~~~~~  302 (458)
                      .+++.....            ... .. .....+.+++.|+|++.++....         .++.++...           
T Consensus        68 ~~g~~~~~~------------~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-----------  124 (246)
T PF08450_consen   68 DTGKVTVLA------------DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-----------  124 (246)
T ss_dssp             TTTEEEEEE------------EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-----------
T ss_pred             CCCcEEEEe------------eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-----------
Confidence            876532111            111 11 34678899999999977775532         244444431           


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCC-e-E--
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGG-E-L--  377 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~-~-~--  377 (458)
                                                  +......+-.   ..+.++| +|+++.|+ +-+..+.|..+++... . .  
T Consensus       125 ----------------------------~~~~~~~~~~---~pNGi~~-s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~  172 (246)
T PF08450_consen  125 ----------------------------KVTVVADGLG---FPNGIAF-SPDGKTLYVADSFNGRIWRFDLDADGGELSN  172 (246)
T ss_dssp             ----------------------------EEEEEEEEES---SEEEEEE-ETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred             ----------------------------eEEEEecCcc---cccceEE-CCcchheeecccccceeEEEeccccccceee
Confidence                                        1111111111   2578888 99998776 5567789999998632 2 1  


Q ss_pred             EEE---eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEe-cCCcEEE
Q 012712          378 IRV---IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYS-ADYWWSK  442 (458)
Q Consensus       378 ~~~---~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~  442 (458)
                      .+.   +....+..-.+++..+|++.++....+.|.+++.+......+.-....+++++|. |+.+.|.
T Consensus       173 ~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  173 RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence            122   2222235788999999998888778899999999843333333334589999995 6665443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=1.6e-09  Score=98.45  Aligned_cols=282  Identities=11%  Similarity=0.115  Sum_probs=180.1

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC-
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG-  128 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg-  128 (458)
                      +++..+.|..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|...... ..|...|+.+.-+.  +|..+++.+.-. 
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~--dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSV--DGSTQLTSSSSSS 1166 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccC--CcceeeeeccccC
Confidence            45677888999999999999999999999999999999999999887777 79999999999888  998887766533 


Q ss_pred             -cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          129 -QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       129 -~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                       ...+|++.+-... .+.+    ..-.++.|+... ..-+.|+......+||++++.....+......      ....-+
T Consensus      1167 PlsaLW~~~s~~~~-~Hsf----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~------~~y~~n 1234 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGP-RHSF----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVT------SSYSNN 1234 (1516)
T ss_pred             chHHHhccccccCc-cccc----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchh------hhhhcc
Confidence             4678998652211 1112    345678888765 33344444457889999999887764322111      111236


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF  287 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~  287 (458)
                      +..|+|++ .+++   .||  .+||++..+....               +.... .-..=.|+|.|.-++..+    .||
T Consensus      1235 ~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~---------------FD~ft-~~~~G~FHP~g~eVIINS----EIw 1288 (1516)
T KOG1832|consen 1235 LAHFSPCD-TLIL---NDG--VLWDVRIPEAIHR---------------FDQFT-DYGGGGFHPSGNEVIINS----EIW 1288 (1516)
T ss_pred             ccccCCCc-ceEe---eCc--eeeeeccHHHHhh---------------hhhhe-ecccccccCCCceEEeec----hhh
Confidence            88999984 5655   455  5799987653221               11001 112235889887666544    478


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-----
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-----  362 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-----  362 (458)
                      |+++-+....++                                      .-.    -..+.| ...|..++..-     
T Consensus      1289 D~RTF~lLh~VP--------------------------------------~Ld----qc~VtF-NstG~VmYa~~~~~d~ 1325 (1516)
T KOG1832|consen 1289 DMRTFKLLHSVP--------------------------------------SLD----QCAVTF-NSTGDVMYAMLNIEDV 1325 (1516)
T ss_pred             hhHHHHHHhcCc--------------------------------------ccc----ceEEEe-ccCccchhhhhhhhhh
Confidence            888743222211                                      111    123344 55555443221     


Q ss_pred             -CC-----------CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec---------CCcEEEecCCc
Q 012712          363 -DC-----------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---------ESDIKILTPNA  416 (458)
Q Consensus       363 -~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------d~~i~iw~~~~  416 (458)
                       .|           ...+-++..+.+.+.++.. ...+..++-+|...+|+.--.         +...++|.+..
T Consensus      1326 ~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~yEIGR 1399 (1516)
T KOG1832|consen 1326 MSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARMYEIGR 1399 (1516)
T ss_pred             hhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEEeccChhhhhhhhhhhhhhhhcc
Confidence             00           1244556556667777764 346778888888887776422         23577776643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=2.8e-09  Score=86.28  Aligned_cols=158  Identities=16%  Similarity=0.139  Sum_probs=114.6

Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCC
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ  246 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  246 (458)
                      ++.+.+..+-+-|++++.... +.           ..+.|.++.|... ++++..|..+|.|..+|++....-..     
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~-----------sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~-----  289 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQ-----------SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNG-----  289 (425)
T ss_pred             ecccccceeEEEEeecccccc-cc-----------cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCC-----
Confidence            556667778899998885432 22           3446888899886 68999999999999999998632111     


Q ss_pred             CCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          247 PADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                            -....-.|...|+++.... ++++|++.+ +++|.+||++..+.                              
T Consensus       290 ------~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------------------------------  333 (425)
T KOG2695|consen  290 ------WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------------------------------  333 (425)
T ss_pred             ------cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------------------------------
Confidence                  0112223677888888776 566555554 88999999987432                              


Q ss_pred             CCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC
Q 012712          325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD  384 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (458)
                           ...+..+.||.+...-.-+-. .+....++++++|...|||.+.+|.++.++...
T Consensus       334 -----~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  334 -----KKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             -----ccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence                 234778889887644444444 777889999999999999999999999888643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=9.7e-08  Score=79.21  Aligned_cols=95  Identities=13%  Similarity=0.149  Sum_probs=78.1

Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      +++.+-.+.+...  .+..+...|..++|+|....++..++.+..|++.|+++...+..+...           ..+.++
T Consensus       175 v~~l~~~~fkssq--~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-----------~~~wSC  241 (463)
T KOG1645|consen  175 VQKLESHDFKSSQ--ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-----------NQIWSC  241 (463)
T ss_pred             eEEeccCCcchhh--cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-----------CCceee
Confidence            4555544444433  377788999999999998568899999999999999999888777642           368999


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                      +|.-++.++++.|..+|.|.+||++..+
T Consensus       242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  242 CWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eeccCCcceeEEeccCceEEEEEccCCC
Confidence            9999888999999999999999999765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=1.5e-07  Score=85.25  Aligned_cols=182  Identities=15%  Similarity=0.187  Sum_probs=127.3

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      ++.++-|.-+|.|++.+.+ |.. .+                     ...|...      ..+|.+++||+.||.|.|-.
T Consensus        49 ~~~~~~GtH~g~v~~~~~~-~~~-~~---------------------~~~~s~~------~~~Gey~asCS~DGkv~I~s   99 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQ-GNP-KT---------------------NFDHSSS------ILEGEYVASCSDDGKVVIGS   99 (846)
T ss_pred             cceeeeccccceEEEEecC-Ccc-cc---------------------ccccccc------ccCCceEEEecCCCcEEEee
Confidence            4567788888888888877 433 22                     1234333      55799999999999999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCC-----CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH  164 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  164 (458)
                      +.+.+...++  ....++.+++++|  +     .+.+++|+..| +.++.-.--+......+..-.++|.++.|..   +
T Consensus       100 l~~~~~~~~~--df~rpiksial~P--d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~  171 (846)
T KOG2066|consen  100 LFTDDEITQY--DFKRPIKSIALHP--DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---N  171 (846)
T ss_pred             ccCCccceeE--ecCCcceeEEecc--chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---c
Confidence            9888876665  4567899999999  6     57799999888 7776543222222223555678999999975   5


Q ss_pred             EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      +++=+..+| |++||+.+++.+..+..+.....    ...-...+.|.++  ..++.|-.| +|++..++.+
T Consensus       172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~~--~~LVIGW~d-~v~i~~I~~~  235 (846)
T KOG2066|consen  172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQDE--DRLVIGWGD-SVKICSIKKR  235 (846)
T ss_pred             EEEEecCCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecCC--CeEEEecCC-eEEEEEEecc
Confidence            677777776 89999999887766654432111    2223456788875  467666555 6999988843

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2e-07  Score=77.45  Aligned_cols=95  Identities=12%  Similarity=0.134  Sum_probs=76.0

Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP  163 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  163 (458)
                      +++.+..+.+... ++.+|...|.+++|+|  ..+ ++..++.+..|+|.|+++...+..  +..+ ..+++++|.-+..
T Consensus       175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp--~~~GLl~~asl~nkiki~dlet~~~vss--y~a~-~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSP--FNEGLLGLASLGNKIKIMDLETSCVVSS--YIAY-NQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhh-cccccchhhhhhccCc--cccceeeeeccCceEEEEecccceeeeh--eecc-CCceeeeeccCCc
Confidence            4455544444433 5577888999999999  444 788899999999999998877665  4445 7899999999988


Q ss_pred             eEEEEecCCCeEEEEeCCCCCc
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAA  185 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~  185 (458)
                      +.+++|...|.|.+||++..+-
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             ceeEEeccCceEEEEEccCCCc
Confidence            9999999999999999997654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=5.6e-09  Score=84.56  Aligned_cols=155  Identities=17%  Similarity=0.209  Sum_probs=112.6

Q ss_pred             EEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc----cceeeeeccccccc
Q 012712           77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER----GGVETKLLGKHQGR  152 (458)
Q Consensus        77 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~  152 (458)
                      ++.+.+..|-+-|++++.. ..+  .....|.++.|..  .++++..|..+|.|...|++..    .....  .-.|...
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--rlyh~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--RLYHDSS  300 (425)
T ss_pred             ecccccceeEEEEeecccc-ccc--ccchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcceE--EEEcCcc
Confidence            4555667788889888764 444  3567899999998  8899999999999999999875    22222  3348899


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      |+++..-.-....|++.+.+|+|++||++.-++.....     ..++|.......-+-..+. ...+++++.|...+||.
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~-----qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM-----QYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWS  374 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhccccee-----eeecccccccccccccccc-cceEEEccCeeEEEEEe
Confidence            99998877333678889999999999999777632221     1124434444444556666 45788899999999999


Q ss_pred             cCCCccCCCccC
Q 012712          233 IRKYKWDGSTDF  244 (458)
Q Consensus       233 ~~~~~~~~~~~~  244 (458)
                      ++.+.++....+
T Consensus       375 l~~ghLl~tipf  386 (425)
T KOG2695|consen  375 LDSGHLLCTIPF  386 (425)
T ss_pred             cccCceeeccCC
Confidence            999887665443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.92  E-value=4.6e-07  Score=75.41  Aligned_cols=228  Identities=16%  Similarity=0.113  Sum_probs=128.3

Q ss_pred             CCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCccee
Q 012712           18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK   96 (458)
Q Consensus        18 ~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~   96 (458)
                      ++|.|..||..+|+.+.+                   ..+. ...+.+ +. ..+++..+++++.++.|..||..+|+.+
T Consensus         1 ~~g~l~~~d~~tG~~~W~-------------------~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~   59 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWS-------------------YDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVL   59 (238)
T ss_dssp             -TSEEEEEETTTTEEEEE-------------------EECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEE
T ss_pred             CCCEEEEEECCCCCEEEE-------------------EECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence            378999999999998855                   1121 122222 11 2335667777788999999999999988


Q ss_pred             eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee-eccccc-cceEEEEEcCCCCeEEEEecCCCe
Q 012712           97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGL  174 (458)
Q Consensus        97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~  174 (458)
                      .++..  ...+......   ++..++.+..++.+..+|..+++..... ...... ...........+ ..++.+..++.
T Consensus        60 W~~~~--~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~  133 (238)
T PF13360_consen   60 WRFDL--PGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGK  133 (238)
T ss_dssp             EEEEC--SSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSE
T ss_pred             EEeec--cccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCc
Confidence            77632  2222211122   4455666667789999999998877652 211111 111112222224 45677777999


Q ss_pred             EEEEeCCCCCccceeeecccCCCCcceeecce-EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712          175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP  253 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  253 (458)
                      |..+|+++|+.+...................+ ..+.+. + + .++.+..++.+.-+|+.+++..-             
T Consensus       134 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~v~~~~~~g~~~~~d~~tg~~~w-------------  197 (238)
T PF13360_consen  134 LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D-G-RVYVSSGDGRVVAVDLATGEKLW-------------  197 (238)
T ss_dssp             EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T-T-EEEEECCTSSEEEEETTTTEEEE-------------
T ss_pred             EEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C-C-EEEEEcCCCeEEEEECCCCCEEE-------------
Confidence            99999999998777665221110000000111 233333 3 4 66666667754434998876221             


Q ss_pred             CccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712          254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL  293 (458)
Q Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~  293 (458)
                          ......+..+ ...++..|+..+ ++.+..||+.+++
T Consensus       198 ----~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  198 ----SKPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             ----EECSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             ----EecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence                0001122221 234555555555 7789999999864

...

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.90  E-value=1.4e-05  Score=62.99  Aligned_cols=147  Identities=17%  Similarity=0.073  Sum_probs=96.2

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      ....+++.|+-.+.+.--|.++|++..+                   +.   -...|-+-+.- -|++++.|...|.+.+
T Consensus        21 dskT~v~igSHs~~~~avd~~sG~~~We-------------------~i---lg~RiE~sa~v-vgdfVV~GCy~g~lYf   77 (354)
T KOG4649|consen   21 DSKTLVVIGSHSGIVIAVDPQSGNLIWE-------------------AI---LGVRIECSAIV-VGDFVVLGCYSGGLYF   77 (354)
T ss_pred             CCceEEEEecCCceEEEecCCCCcEEee-------------------hh---hCceeeeeeEE-ECCEEEEEEccCcEEE
Confidence            3467788888889999899998887744                   11   12233332222 4778999999999999


Q ss_pred             EECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEE
Q 012712           88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY  167 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  167 (458)
                      -+.++|+....+.....-.+ .....+  ++.++..++.|+.....|..+...+..  .+.......+-+..|.. .-|+
T Consensus        78 l~~~tGs~~w~f~~~~~vk~-~a~~d~--~~glIycgshd~~~yalD~~~~~cVyk--skcgG~~f~sP~i~~g~-~sly  151 (354)
T KOG4649|consen   78 LCVKTGSQIWNFVILETVKV-RAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYK--SKCGGGTFVSPVIAPGD-GSLY  151 (354)
T ss_pred             EEecchhheeeeeehhhhcc-ceEEcC--CCceEEEecCCCcEEEecccccceEEe--cccCCceeccceecCCC-ceEE
Confidence            99999987777632222222 223455  889999999999999999998887765  33233333344455533 2355


Q ss_pred             EecCCCeEEEEeCCCC
Q 012712          168 TCGEDGLVQHFDLRTG  183 (458)
Q Consensus       168 s~~~dg~i~iwd~~~~  183 (458)
                      .+...|.+.--..+..
T Consensus       152 ~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  152 AAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEeccceEEEEccCCC
Confidence            5556666665555544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.90  E-value=1.9e-06  Score=75.91  Aligned_cols=303  Identities=14%  Similarity=0.164  Sum_probs=153.8

Q ss_pred             ecCCCEEEEec---------CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           70 NTDGDILISGS---------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        70 s~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      |||+++++...         ..+.+.|||+++++.....  .....+....|+|  +|+.++... ++.|.+++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~--~~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT--PPPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc--CCccccccceeec--CCCeeEEEe-cCceEEEECCCCCe
Confidence            67888777632         2467899999987764433  2257889999999  999999886 47899998876643


Q ss_pred             eeeeeccc-------c---------ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeec
Q 012712          141 VETKLLGK-------H---------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV  204 (458)
Q Consensus       141 ~~~~~~~~-------~---------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (458)
                      .+. ...+       -         -+.-..+-|+|++.++++.--.+..|..+.+..-......             -.
T Consensus        76 ~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~-------------yp  141 (353)
T PF00930_consen   76 TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQ-------------YP  141 (353)
T ss_dssp             EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTES-------------S-
T ss_pred             EEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCcccc-------------CC
Confidence            321 1222       0         1123568899999655555445555544433211110000             00


Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEec-CC
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DE  282 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~  282 (458)
                      .+..+.+ |.-|.--.    .-.+.++|+.+++....          .+..........+..+.|.++++ +++.-. .+
T Consensus       142 ~~~~~~Y-Pk~G~~np----~v~l~v~~~~~~~~~~~----------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~  206 (353)
T PF00930_consen  142 EVESIRY-PKAGDPNP----RVSLFVVDLASGKTTEL----------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD  206 (353)
T ss_dssp             EEEEEE---BTTS-------EEEEEEEESSSTCCCEE-------------HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred             ccccccc-CCCCCcCC----ceEEEEEECCCCcEEEe----------eeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence            1233333 21011111    11366788877653210          01111122356789999999998 444333 22


Q ss_pred             ----cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cE
Q 012712          283 ----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EY  357 (458)
Q Consensus       283 ----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~  357 (458)
                          .+.+.|..++.....                                  ......+-...  .....++.+++ .+
T Consensus       207 q~~~~l~~~d~~tg~~~~~----------------------------------~~e~~~~Wv~~--~~~~~~~~~~~~~~  250 (353)
T PF00930_consen  207 QNRLDLVLCDASTGETRVV----------------------------------LEETSDGWVDV--YDPPHFLGPDGNEF  250 (353)
T ss_dssp             STEEEEEEEEECTTTCEEE----------------------------------EEEESSSSSSS--SSEEEE-TTTSSEE
T ss_pred             CCEEEEEEEECCCCceeEE----------------------------------EEecCCcceee--ecccccccCCCCEE
Confidence                266667655321100                                  00000011010  12333322444 45


Q ss_pred             EEEecCCCe--EEEEEecCCeEEEEeecCCceee-EEEecCCCCeEE-EeecC--C--cEEEecCC-ccccccccccccc
Q 012712          358 VVSGSDCGR--IFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVLA-SSGIE--S--DIKILTPN-AADRATLPTNIEQ  428 (458)
Q Consensus       358 l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~-s~~~d--~--~i~iw~~~-~~~~~~~~~~~~~  428 (458)
                      |.....+|.  |++++...+. .+.+....-.|. -+.|+++++.|. ++..+  +  .|..-++. +++...+......
T Consensus       251 l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~  329 (353)
T PF00930_consen  251 LWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD  329 (353)
T ss_dssp             EEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST
T ss_pred             EEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC
Confidence            555556664  5555654454 445554455564 477888877554 44432  2  44445566 5555555544444


Q ss_pred             EEEEEEecCCcEEEe
Q 012712          429 VCFSIYSADYWWSKS  443 (458)
Q Consensus       429 v~~~~~s~d~~~l~s  443 (458)
                      ...+.|||+|++++-
T Consensus       330 ~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  330 HYSASFSPDGKYYVD  344 (353)
T ss_dssp             TEEEEE-TTSSEEEE
T ss_pred             ceEEEECCCCCEEEE
Confidence            479999999988764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.89  E-value=1.3e-06  Score=72.70  Aligned_cols=233  Identities=17%  Similarity=0.112  Sum_probs=132.3

Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEE--EccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAK--IMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      +++|..||..+|+.+.+....  ..+....  ..+  ++..+++++.++.+..||..+++.+....+.......  . ..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~-~~   74 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG--PGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--P-VV   74 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS--SSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--E-EE
T ss_pred             CCEEEEEECCCCCEEEEEECC--CCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--e-ee
Confidence            689999999999988877321  1122222  232  5566777788999999999999887765553322222  1 22


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      .++  .++.++.++.+..+|.++++..............    ........+.   +..++++..++.|..+|+++++..
T Consensus        75 ~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~  145 (238)
T PF13360_consen   75 DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLL  145 (238)
T ss_dssp             ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEE
T ss_pred             ccc--ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEe---cCEEEEEeccCcEEEEecCCCcEE
Confidence            233  4566667889999999999987764221110000    0011222232   357777888999999999998865


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA  319 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (458)
                      .......+....    .. .....+..-....++..+++..++.+..+|+.++..                         
T Consensus       146 w~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~-------------------------  195 (238)
T PF13360_consen  146 WKYPVGEPRGSS----PI-SSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK-------------------------  195 (238)
T ss_dssp             EEEESSTT-SS------E-EEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE-------------------------
T ss_pred             EEeecCCCCCCc----ce-eeecccccceEEECCEEEEEcCCCeEEEEECCCCCE-------------------------
Confidence            443321111000    00 001112222233355555555566544448877421                         


Q ss_pred             cCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE
Q 012712          320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR  379 (458)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  379 (458)
                                   .-...  ..  ..... . ..++..|+.++.++.|..||+.+|+.+-
T Consensus       196 -------------~w~~~--~~--~~~~~-~-~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  196 -------------LWSKP--IS--GIYSL-P-SVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             -------------EEEEC--SS---ECEC-E-ECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             -------------EEEec--CC--CccCC-c-eeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence                         11111  11  12221 1 4677788888799999999999998764

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.87  E-value=3.2e-07  Score=86.98  Aligned_cols=228  Identities=14%  Similarity=0.160  Sum_probs=132.4

Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF  283 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  283 (458)
                      ..|.++.|..+ .+-++.+...|.|.+-|..+..                ......-...|.+++|+||+++++..+.+.
T Consensus        69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~----------------~eivg~vd~GI~aaswS~Dee~l~liT~~~  131 (1265)
T KOG1920|consen   69 DEIVSVQFLAD-TNSICVITALGDIILVDPETLE----------------LEIVGNVDNGISAASWSPDEELLALITGRQ  131 (1265)
T ss_pred             cceEEEEEecc-cceEEEEecCCcEEEEcccccc----------------eeeeeeccCceEEEeecCCCcEEEEEeCCc
Confidence            46889999987 6788888899999999887764                233444567899999999999999888654


Q ss_pred             EEEEEccCCCCCCCCCCC----------CccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSS----------PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP  353 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~  353 (458)
                      ..++...+-......+..          ..........+.....+.+........  +.......+..   -..+.| --
T Consensus       132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e--k~~~~~~~~~~---~~~IsW-Rg  205 (1265)
T KOG1920|consen  132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE--KALEQIEQDDH---KTSISW-RG  205 (1265)
T ss_pred             EEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc--ccccchhhccC---CceEEE-cc
Confidence            333332221111111100          000000000111111111110000000  00000011111   245777 89


Q ss_pred             CCcEEEE-----ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe---ecCCcEEEecCCccccc----c
Q 012712          354 KCEYVVS-----GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS---GIESDIKILTPNAADRA----T  421 (458)
Q Consensus       354 ~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~d~~i~iw~~~~~~~~----~  421 (458)
                      ||+|+|+     ......|++||.+ |.+-.+-....+.=.+++|-|.|..+|+-   ..|+.|.++...+-+..    .
T Consensus       206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~  284 (1265)
T KOG1920|consen  206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLP  284 (1265)
T ss_pred             CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccC
Confidence            9999997     3333789999986 43332222223334679999999999875   34668999987654322    3


Q ss_pred             cccccccEEEEEEecCCcEEEe---eecCCceEEEEE
Q 012712          422 LPTNIEQVCFSIYSADYWWSKS---QNFSCSILLFEW  455 (458)
Q Consensus       422 ~~~~~~~v~~~~~s~d~~~l~s---~~~d~~i~~w~~  455 (458)
                      .+.....+..++|+.++..||.   ......|++|-.
T Consensus       285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             CcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence            3334444999999999999987   444445999953

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.87  E-value=1.9e-06  Score=73.24  Aligned_cols=291  Identities=12%  Similarity=0.113  Sum_probs=130.2

Q ss_pred             ECCCcceeeeeccCCCc-----ceeEEEEccCCCCeEEEEEcC-CC--cEEEeecccccceeeeeccccc-cceEEEEEc
Q 012712           89 DWKTERVKLSFHSGHND-----NVFQAKIMPFTDDRSIVTCAA-DG--QVRHAQILERGGVETKLLGKHQ-GRAHKLAIE  159 (458)
Q Consensus        89 d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~  159 (458)
                      |..+|..+.++ .....     -.+.-+|.+  ||+.|+.++. +|  .+.+.|+.+++..+.   .... .......++
T Consensus        16 D~~TG~~VtrL-T~~~~~~h~~YF~~~~ft~--dG~kllF~s~~dg~~nly~lDL~t~~i~QL---Tdg~g~~~~g~~~s   89 (386)
T PF14583_consen   16 DPDTGHRVTRL-TPPDGHSHRLYFYQNCFTD--DGRKLLFASDFDGNRNLYLLDLATGEITQL---TDGPGDNTFGGFLS   89 (386)
T ss_dssp             -TTT--EEEE--S-TTS-EE---TTS--B-T--TS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-
T ss_pred             CCCCCceEEEe-cCCCCcccceeecCCCcCC--CCCEEEEEeccCCCcceEEEEcccCEEEEC---ccCCCCCccceEEe
Confidence            55667666655 22222     223345677  8877666554 54  466667777665543   3222 223346667


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE--CCCCCcEEEEec--------------
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNANLFAVAG--------------  223 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~--------------  223 (458)
                      |+++.+++ ......|+-.|+++.+....+..+..          .+....|  +.+ +..++-.-              
T Consensus        90 ~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~~p~~----------~~g~gt~v~n~d-~t~~~g~e~~~~d~~~l~~~~~  157 (386)
T PF14583_consen   90 PDDRALYY-VKNGRSLRRVDLDTLEERVVYEVPDD----------WKGYGTWVANSD-CTKLVGIEISREDWKPLTKWKG  157 (386)
T ss_dssp             TTSSEEEE-EETTTEEEEEETTT--EEEEEE--TT----------EEEEEEEEE-TT-SSEEEEEEEEGGG-----SHHH
T ss_pred             cCCCeEEE-EECCCeEEEEECCcCcEEEEEECCcc----------cccccceeeCCC-ccEEEEEEEeehhccCccccHH
Confidence            88754444 43446889999999887666654321          1222333  333 33332211              


Q ss_pred             --------CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecCC---c--EEEEEc
Q 012712          224 --------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE---F--IYLFTQ  289 (458)
Q Consensus       224 --------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~---~--i~i~~~  289 (458)
                              ....|...|+.+++.                ...-.....+..+.|+|.. .+|+.|.+|   .  -++|-+
T Consensus       158 f~e~~~a~p~~~i~~idl~tG~~----------------~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i  221 (386)
T PF14583_consen  158 FREFYEARPHCRIFTIDLKTGER----------------KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI  221 (386)
T ss_dssp             HHHHHHC---EEEEEEETTT--E----------------EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE
T ss_pred             HHHHHhhCCCceEEEEECCCCce----------------eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEE
Confidence                    012244445554431                1222234567788899965 455555554   2  377877


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-----ecCC
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-----GSDC  364 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-----~~~d  364 (458)
                      ++..                                     ...+.+..+... .+..=.||.|||..|..     ++.+
T Consensus       222 ~~dg-------------------------------------~~~~~v~~~~~~-e~~gHEfw~~DG~~i~y~~~~~~~~~  263 (386)
T PF14583_consen  222 NTDG-------------------------------------SNVKKVHRRMEG-ESVGHEFWVPDGSTIWYDSYTPGGQD  263 (386)
T ss_dssp             ETTS----------------------------------------EESS---TT-EEEEEEEE-TTSS-EEEEEEETTT--
T ss_pred             EcCC-------------------------------------CcceeeecCCCC-cccccccccCCCCEEEEEeecCCCCc
Confidence            6531                                     122222223222 23444456999987764     2335


Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC----------------cEEEecCCcccccccccccc-
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES----------------DIKILTPNAADRATLPTNIE-  427 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----------------~i~iw~~~~~~~~~~~~~~~-  427 (458)
                      ..|.-+|+.+++.......  .....+--++||++++-=+.|.                .|++++++.+....+..|.. 
T Consensus       264 ~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~s  341 (386)
T PF14583_consen  264 FWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTS  341 (386)
T ss_dssp             EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE----
T ss_pred             eEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCc
Confidence            5677788888765433222  1234556678998876433332                45667777665443333321 


Q ss_pred             ----------cEEEEEEecCCcEEE-eeecCCceEEE
Q 012712          428 ----------QVCFSIYSADYWWSK-SQNFSCSILLF  453 (458)
Q Consensus       428 ----------~v~~~~~s~d~~~l~-s~~~d~~i~~w  453 (458)
                                .-..+.|||||++++ ++...|...||
T Consensus       342 w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  342 WKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             ---BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             ceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence                      135688999998875 56677876665

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=1.4e-07  Score=85.28  Aligned_cols=191  Identities=14%  Similarity=0.159  Sum_probs=132.7

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      ...++|++++  +++|+-|..+|.|++.+... .....  ..|...      ..  +|+++++|+.||+|.|-.+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~~~~--~~~s~~------~~--~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NPKTN--FDHSSS------IL--EGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-ccccc--cccccc------cc--CCceEEEecCCCcEEEeeccCCcc
Confidence            4567788886  67999999999999999764 33222  245443      44  899999999999999999988877


Q ss_pred             eeeeeccccccceEEEEEcCC----CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          141 VETKLLGKHQGRAHKLAIEPG----SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      .....   ...++.+++++|+    ....+++|+..| +.++.-+-.......        ..+...++|.++.|.   +
T Consensus       106 ~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--------~l~~~eG~I~~i~W~---g  170 (846)
T KOG2066|consen  106 ITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--------VLSEGEGPIHSIKWR---G  170 (846)
T ss_pred             ceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--------eeecCccceEEEEec---C
Confidence            65432   4578999999998    235789999988 777653321111111        122256789999997   5


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEcc
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD  290 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~  290 (458)
                      +++|-++.+| |++||..+.+.....+.+.+         ..........+.|.++.+ |+.|=.++|++..++
T Consensus       171 ~lIAWand~G-v~vyd~~~~~~l~~i~~p~~---------~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  171 NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ---------SVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             cEEEEecCCC-cEEEeccccceeeccCCCCC---------CCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            6999998887 99999999886655433221         111122334677877664 555667788888877

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.85  E-value=1.2e-05  Score=74.03  Aligned_cols=213  Identities=14%  Similarity=0.111  Sum_probs=113.4

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceE--EEEEecCCCEEEEecCCCeEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN--TVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      +.+++.++.++.|.-.|..+|+.+-+.....               ....+...+.  .+... ++..++.++.++.|.-
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~---------------~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~A  124 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKL---------------PADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVA  124 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCC---------------CccccccccccCCcEEc-cCCeEEEecCCCeEEE
Confidence            3456777778889989999888775411000               0000000010  11121 2257777888999999


Q ss_pred             EECCCcceeeeeccCCCc-ceeEEEEccCCCCeEEEEEc---------CCCcEEEeecccccceeeeeccccc-------
Q 012712           88 WDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCA---------ADGQVRHAQILERGGVETKLLGKHQ-------  150 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~---------~dg~i~vw~~~~~~~~~~~~~~~~~-------  150 (458)
                      +|.++|+.+.++...... .-..+.-+|.-.+..++.++         .+|.+.-+|..+++.+.........       
T Consensus       125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~  204 (488)
T cd00216         125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW  204 (488)
T ss_pred             EECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence            999999988776322110 00111112211223444443         3678888899888876653332110       


Q ss_pred             -----------cce-EEEEEcCCCCeEEEEecCCC------------------eEEEEeCCCCCccceeeecccCC--CC
Q 012712          151 -----------GRA-HKLAIEPGSPHVFYTCGEDG------------------LVQHFDLRTGAATELFTCRPIDD--RR  198 (458)
Q Consensus       151 -----------~~v-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~--~~  198 (458)
                                 ..+ ...++.+.+ .+++.++.++                  .|.-+|+++++....++......  ..
T Consensus       205 ~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~  283 (488)
T cd00216         205 GPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD  283 (488)
T ss_pred             CCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence                       001 123444444 3566666554                  79999999999887765321100  00


Q ss_pred             cceeecceEEEE-ECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712          199 NYMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKYKWDG  240 (458)
Q Consensus       199 ~~~~~~~v~~~~-~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  240 (458)
                      .. ....+..+. ..-.....+++++.+|.+...|.++++..-
T Consensus       284 ~~-s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         284 GP-NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             cC-CCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence            00 000111111 111101367888899999999999987543

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.84  E-value=2e-06  Score=77.73  Aligned_cols=294  Identities=11%  Similarity=0.008  Sum_probs=162.0

Q ss_pred             EEEeeCCCcEEEEEcccccccccc--cccccc---ccccceEEe-eee---eEe---ecCCCceEEEEEe---cCCCEEE
Q 012712           13 ARTSVDKALVDVWLRELGQLSTRN--FALRRR---ASEDLVLRL-GIY---AKL---DKHRGCVNTVSFN---TDGDILI   77 (458)
Q Consensus        13 l~~~~~d~~i~iw~~~~g~~~~~~--~~~~~~---~~~~~~~~~-~~~---~~~---~~h~~~v~~~~~s---~~~~~l~   77 (458)
                      +.+|+..|.|+|+-+-+++.+.++  |.+-..   +-.+..+++ ..-   ..+   ..|.-   .+++.   .||++|.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp---~~s~t~g~ydGr~~f  145 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHP---HMSFTDGTYDGRYLF  145 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCC---cccccCCccceeEEE
Confidence            788999999999999999888762  322100   000000000 000   001   01111   12222   2677887


Q ss_pred             EecC-CCeEEEEECCCcceeeeeccCCCcceeEEEEc--cCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceE
Q 012712           78 SGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIM--PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH  154 (458)
Q Consensus        78 s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~  154 (458)
                      .-.. +..|-.-+++..++...+.......+..++|-  |  +..+++.+++..                          
T Consensus       146 indk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p--~t~yv~~~~e~~--------------------------  197 (635)
T PRK02888        146 INDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP--RTGYVFCNGEFR--------------------------  197 (635)
T ss_pred             EecCCCcceEEEECccEeeceeEeCCCccCccccCccccC--CccEEEeCcccc--------------------------
Confidence            7654 45566666666555444433445556666664  4  555555544310                          


Q ss_pred             EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---C-CeEEE
Q 012712          155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---D-EYTRL  230 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---d-g~i~i  230 (458)
                       +=+.|+|..+..+.-..+.+.+.|.++.+....+...           .....++++|+ +.++++.+.   . .++..
T Consensus       198 -~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-----------gnpd~v~~spd-Gk~afvTsyNsE~G~tl~e  264 (635)
T PRK02888        198 -IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-----------GNLDNVDTDYD-GKYAFSTCYNSEEGVTLAE  264 (635)
T ss_pred             -cccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-----------CCcccceECCC-CCEEEEeccCcccCcceee
Confidence             1123444222222333466777788876665555432           23456788997 566666542   2 22222


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEE--------EeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL--------AFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      .+.....                           ..+        ++.++|++... .++.|.+.|..+.....      
T Consensus       265 m~a~e~d---------------------------~~vvfni~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~------  310 (635)
T PRK02888        265 MMAAERD---------------------------WVVVFNIARIEEAVKAGKFKTI-GGSKVPVVDGRKAANAG------  310 (635)
T ss_pred             eccccCc---------------------------eEEEEchHHHHHhhhCCCEEEE-CCCEEEEEECCccccCC------
Confidence            2221111                           122        33456776554 35678899976510000      


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeE----
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGEL----  377 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~----  377 (458)
                                                 ......+.-..+   ...+.+ +|||+++++++ .+.++.+.|+.+.+.    
T Consensus       311 ---------------------------~~v~~yIPVGKs---PHGV~v-SPDGkylyVanklS~tVSVIDv~k~k~~~~~  359 (635)
T PRK02888        311 ---------------------------SALTRYVPVPKN---PHGVNT-SPDGKYFIANGKLSPTVTVIDVRKLDDLFDG  359 (635)
T ss_pred             ---------------------------cceEEEEECCCC---ccceEE-CCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence                                       112222222222   467777 99999988655 578999999987542    


Q ss_pred             --------EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          378 --------IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       378 --------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                              +.+.+-. ......+|.++|....|..-|..|..|++..
T Consensus       360 ~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        360 KIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                    3333332 2345778999999888889999999999886

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.84  E-value=6.7e-07  Score=74.48  Aligned_cols=286  Identities=9%  Similarity=0.052  Sum_probs=156.1

Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----------CCcEEEeecccccceeeeecccc-c-
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGKH-Q-  150 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------dg~i~vw~~~~~~~~~~~~~~~~-~-  150 (458)
                      +.+.++|.++++.+-.+..+...   .+..+|  +++.++++..          .-.|.+||..+-.......++.- . 
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~---~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLG---NVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSE---EEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeecccCC---ceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            47999999998887776444433   466789  9998887542          33589999988765544434421 1 


Q ss_pred             ---cceEEEEEcCCCCeEEEE-ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712          151 ---GRAHKLAIEPGSPHVFYT-CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE  226 (458)
Q Consensus       151 ---~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  226 (458)
                         .....++++.+++.+++. .+--..|.+.|+..++.+..+..+              -|...-|.++.-|.+-+.||
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--------------GC~~iyP~~~~~F~~lC~DG  157 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--------------GCWLIYPSGNRGFSMLCGDG  157 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--------------SEEEEEEEETTEEEEEETTS
T ss_pred             eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--------------CEEEEEecCCCceEEEecCC
Confidence               123446778888543332 233457889999988877766532              23333344345688888999


Q ss_pred             eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712          227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      .+....+.........         ....+....+..+..-++... +.++....+|.|+-.++.........+      
T Consensus       158 sl~~v~Ld~~Gk~~~~---------~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~------  222 (342)
T PF06433_consen  158 SLLTVTLDADGKEAQK---------STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP------  222 (342)
T ss_dssp             CEEEEEETSTSSEEEE---------EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE------
T ss_pred             ceEEEEECCCCCEeEe---------eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc------
Confidence            9998888743211110         001111111112223334333 445555557778877776532100000      


Q ss_pred             cccccccCCCCccccCCCCCCcccccCce--eecCccceeeeeEEEEecCCCcEEEEec---CC-------CeEEEEEec
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNFFGPKCEYVVSGS---DC-------GRIFIWKKK  373 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~d-------g~i~iwd~~  373 (458)
                                              .....  .-...-.+.--.-+++ ++..+.|+..-   .+       ..|.++|+.
T Consensus       223 ------------------------~~~~t~~e~~~~WrPGG~Q~~A~-~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~  277 (342)
T PF06433_consen  223 ------------------------WSLLTDAEKADGWRPGGWQLIAY-HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK  277 (342)
T ss_dssp             ------------------------EESS-HHHHHTTEEE-SSS-EEE-ETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred             ------------------------ccccCccccccCcCCcceeeeee-ccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence                                    00000  0000000111223444 55444444321   11       158888999


Q ss_pred             CCeEEEEeecCCceeeEEEecCCCC-eEEEe-ecCCcEEEecCCccccccccccccc
Q 012712          374 GGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRATLPTNIEQ  428 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~  428 (458)
                      +++.+.++.. ..++.+|+.+.|.+ +|.+. ..++.|.+||..+++........+.
T Consensus       278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~  333 (342)
T PF06433_consen  278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE  333 (342)
T ss_dssp             TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred             CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence            9999998874 34688999998876 55544 4579999999999987755444443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.80  E-value=5.3e-06  Score=73.06  Aligned_cols=301  Identities=14%  Similarity=0.103  Sum_probs=152.9

Q ss_pred             CCCCCeEEEe---------eCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEE
Q 012712            7 NNNNKRARTS---------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI   77 (458)
Q Consensus         7 ~~~~~~l~~~---------~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   77 (458)
                      |||+++++..         +..+.+.|+|+++++...                      +......+....|||+|+.+|
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~----------------------l~~~~~~~~~~~~sP~g~~~~   58 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP----------------------LTPPPPKLQDAKWSPDGKYIA   58 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE----------------------SS-EETTBSEEEE-SSSTEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE----------------------CcCCccccccceeecCCCeeE
Confidence            6888887772         235678899999866442                      222256788999999999998


Q ss_pred             EecCCCeEEEEECCCcceeeeeccCC----------------CcceeEEEEccCCCCeEEEEEcCC-CcEEEeecccccc
Q 012712           78 SGSDDRRVILWDWKTERVKLSFHSGH----------------NDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGG  140 (458)
Q Consensus        78 s~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~~~l~s~~~d-g~i~vw~~~~~~~  140 (458)
                      -.. ++.|.+++..++...+....+-                -+.-..+.|||  |+++|+....| ..|+.+.+.....
T Consensus        59 ~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~~~d~~~v~~~~~~~~~~  135 (353)
T PF00930_consen   59 FVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFLRFDEREVPEYPLPDYSP  135 (353)
T ss_dssp             EEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred             EEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEEEECCcCCceEEeeccCC
Confidence            875 5789999987775443332220                11235688999  99999887653 4444444322111


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                      ...     .-..+..+.+-.-|... .    .-.+.++|+.+++....-.......     ....+..+.|.++ +..|+
T Consensus       136 ~~~-----~yp~~~~~~YPk~G~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~~-----~~~yl~~v~W~~d-~~~l~  199 (353)
T PF00930_consen  136 PDS-----QYPEVESIRYPKAGDPN-P----RVSLFVVDLASGKTTELDPPNSLNP-----QDYYLTRVGWSPD-GKRLW  199 (353)
T ss_dssp             STE-----SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHT-----SSEEEEEEEEEET-TEEEE
T ss_pred             ccc-----cCCcccccccCCCCCcC-C----ceEEEEEECCCCcEEEeeeccccCC-----CccCcccceecCC-CcEEE
Confidence            000     00123334442222111 1    1246778888876542211100000     2335789999998 45343


Q ss_pred             Ee--cCC---CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc---eeEEEeC-CCCcEEE-Eec-CC--cEEEE
Q 012712          221 VA--GSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG---ITGLAFS-DQSELLV-SYN-DE--FIYLF  287 (458)
Q Consensus       221 ~~--~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~-~~~~~l~-~~~-~~--~i~i~  287 (458)
                      ..  ..+   ..+.++|..+++....              ........   .....+. +++..++ ... +|  .|+++
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~--------------~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVV--------------LEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEE--------------EEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEE--------------EEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence            33  222   2366777766532110              01111111   1244444 6655443 333 44  47777


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCC--
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDC--  364 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~d--  364 (458)
                      +...+.                                       .+.+....-  .|..+..++++++.|+ ++..+  
T Consensus       266 ~~~~~~---------------------------------------~~~lT~G~~--~V~~i~~~d~~~~~iyf~a~~~~p  304 (353)
T PF00930_consen  266 DLDGGK---------------------------------------PRQLTSGDW--EVTSILGWDEDNNRIYFTANGDNP  304 (353)
T ss_dssp             ETTSSE---------------------------------------EEESS-SSS---EEEEEEEECTSSEEEEEESSGGT
T ss_pred             cccccc---------------------------------------eeccccCce--eecccceEcCCCCEEEEEecCCCC
Confidence            776531                                       222322222  2545443488877655 44432  


Q ss_pred             C--eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712          365 G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS  403 (458)
Q Consensus       365 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  403 (458)
                      +  .++.-++..+..+..+....+.-..+.|||++++++-.
T Consensus       305 ~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  305 GERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             TSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             CceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            2  45555555234455665444333689999999987754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.80  E-value=2.2e-07  Score=85.24  Aligned_cols=184  Identities=13%  Similarity=0.139  Sum_probs=133.6

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      +..++.|+-...+...|+.+++..+.                     ..--.+.|.-|+.  ++++|.+|...|+|.+-|
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~---------------------~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD  203 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRT---------------------TNVSASGVTIMRY--NNRNLFCGDTRGTVFLRD  203 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeee---------------------eeccCCceEEEEe--cCcEEEeecccceEEeec
Confidence            34466666566666778776655422                     2223334666655  578999999999999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---------CCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      ..+.+.++++ ..|++.|.++..    .|++|++||.         |.-|+|||++..+.+..  +.-+.++ .-+.|+|
T Consensus       204 ~~s~~~iht~-~aHs~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~P-~flrf~P  275 (1118)
T KOG1275|consen  204 PNSFETIHTF-DAHSGSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYGP-QFLRFHP  275 (1118)
T ss_pred             CCcCceeeee-eccccceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccCc-hhhhhcc
Confidence            9999999998 899999988766    7889999886         45689999998876654  3333333 5578899


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCC-c-cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGA-A-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      .-...++.++..|...+-|..+-. + ...+...+        ....+..+.+++. ++.++.|..+|.|.+|.-
T Consensus       276 sl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p--------~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  276 SLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP--------NGSGISAFDISSN-GDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccceEEEEecccceeeccccccCCCccceeEEcc--------CCCcceeEEecCC-CceEEEecccCcEeeecC
Confidence            877788999999999999843321 1 12222211        2334889999997 799999999999999973

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.79  E-value=1.1e-05  Score=65.76  Aligned_cols=221  Identities=14%  Similarity=0.191  Sum_probs=118.8

Q ss_pred             eeEeecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           54 YAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      .+.+.+-...+..|+|.|+.+ ++++....+.|...+. +|+.+.++.-.-.+..-.+++..  ++.++++.-.++.+.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG--NGRYVLSEERDQRLYI   90 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence            345667677799999999755 6666777888888886 47777666333346678899987  7877777767899999


Q ss_pred             eecccccc-e-----eeeec--c-ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC---CCccceeeecccCCCCcc
Q 012712          133 AQILERGG-V-----ETKLL--G-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNY  200 (458)
Q Consensus       133 w~~~~~~~-~-----~~~~~--~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~  200 (458)
                      .++..... +     ....+  . .+...+..++|+|.+.. |+.+-......++.++.   ..............  ..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~--~~  167 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD--DK  167 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---HT
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeecccccccc--cc
Confidence            98844321 1     11111  1 24456899999998844 45556666666776654   21111111111100  00


Q ss_pred             eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712          201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      .....+.+++++|..+++++....+..|..+| .+++....+.+....      .-....-.....|+|.++|++.++.-
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~------~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF------HGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG------GG-SS---SEEEEEE-TT--EEEEET
T ss_pred             ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc------cCcccccCCccEEEECCCCCEEEEcC
Confidence            02235789999998888888888999999999 444433322221100      00011123578899999998877776


Q ss_pred             CCcEEEE
Q 012712          281 DEFIYLF  287 (458)
Q Consensus       281 ~~~i~i~  287 (458)
                      -+..+.|
T Consensus       241 pNlfy~f  247 (248)
T PF06977_consen  241 PNLFYRF  247 (248)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEe
Confidence            5555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.77  E-value=1.2e-06  Score=78.46  Aligned_cols=153  Identities=10%  Similarity=0.111  Sum_probs=107.8

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV   85 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   85 (458)
                      ++..+++++.|++-|.+.+++..+|+....                    ...+-.+.+..+..+++..++|.|+..|.|
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------------------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V  100 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKL--------------------KNEGATGITCVRSVSSVEYLVAAGTASGRV  100 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhcc--------------------cccCccceEEEEEecchhHhhhhhcCCceE
Confidence            456678999999999999999998876643                    233455667778889999999999999999


Q ss_pred             EEEECCCccee-----eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEE
Q 012712           86 ILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        86 ~iwd~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~  158 (458)
                      .++-+..+.+.     ......|...|++++|++  ++..+++|...|+|.+-.+.....  .....+......|-.+.+
T Consensus       101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~  178 (726)
T KOG3621|consen  101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY  178 (726)
T ss_pred             EeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence            99988764331     112244788999999999  999999999999999888876211  111223345567777776


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCC
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGA  184 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~  184 (458)
                      ...  .+|++....  -.+++++.+.
T Consensus       179 ~q~--~LLVStl~r--~~Lc~tE~et  200 (726)
T KOG3621|consen  179 LQS--YLLVSTLTR--CILCQTEAET  200 (726)
T ss_pred             ccc--eehHhhhhh--hheeecchhH
Confidence            642  455554432  2355555443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.76  E-value=4.4e-05  Score=60.22  Aligned_cols=111  Identities=13%  Similarity=0.067  Sum_probs=80.4

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      ..+++.|+..+.+.--|..+|....+.  --...|.+-+.-   -|++++.|...|.+.+.+..++.........  ..-
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~v   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETV   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeeh--hhh
Confidence            357778888888888899998876654  233445444443   3667999999999999999999776552221  111


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeee
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  191 (458)
                      -......+++ .+++.++.|++.+..|.++..++...++
T Consensus        96 k~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   96 KVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             ccceEEcCCC-ceEEEecCCCcEEEecccccceEEeccc
Confidence            1234456777 6899999999999999999888777654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=1.8e-08  Score=91.94  Aligned_cols=218  Identities=12%  Similarity=0.125  Sum_probs=145.4

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC-eEEEEe
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHFD  179 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd  179 (458)
                      ..|+...+|++|+-  +.+.|+.|+..|.|+++++.++.....  ..+|...++.+.-+.+|..+|.+++... -..+|+
T Consensus      1098 rd~~~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~s--~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEES--VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             hccccceeeEEeec--CCceEEeeeccceEEEEEccCcccccc--ccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            56888999999999  999999999999999999999887765  7899999999999999965555555544 467898


Q ss_pred             CCC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712          180 LRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      +.. +.....+.              .-.++.|+.. ...-+.|+......+||+.+......+-.        .  .. 
T Consensus      1174 ~~s~~~~~Hsf~--------------ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt--------~--~~- 1227 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD--------------EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLT--------D--TV- 1227 (1516)
T ss_pred             cccccCcccccc--------------ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcC--------c--ch-
Confidence            764 23333332              3467788765 33444555556789999998764322100        0  00 


Q ss_pred             ccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          259 DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       259 ~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                      .....-++..|+|+..++.-    .=.+||.+..                                      ..++.|..
T Consensus      1228 ~~~y~~n~a~FsP~D~LIln----dGvLWDvR~~--------------------------------------~aIh~FD~ 1265 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILN----DGVLWDVRIP--------------------------------------EAIHRFDQ 1265 (1516)
T ss_pred             hhhhhccccccCCCcceEee----CceeeeeccH--------------------------------------HHHhhhhh
Confidence            11222367789998877652    2257888763                                      22333332


Q ss_pred             ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE
Q 012712          339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA  401 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  401 (458)
                      ...  .+.. . |+|+|.-++.-+     .|||+.+.+.+.....-.  -..+.|+..|..+.
T Consensus      1266 ft~--~~~G-~-FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1266 FTD--YGGG-G-FHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred             hee--cccc-c-ccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchh
Confidence            221  1222 2 499999888766     489999888776654332  24667877777554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.72  E-value=0.00014  Score=67.28  Aligned_cols=216  Identities=15%  Similarity=0.110  Sum_probs=114.7

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      +.+|+.++.++.|.-.|.++|+.+-+......    ..   .   .........-..+++.  +..++.++.|+.+.-.|
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~----~~---~---~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALD  136 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP----DD---V---IPVMCCDVVNRGVALY--DGKVFFGTLDARLVALD  136 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCC----cc---c---ccccccccccccceEE--CCEEEEEcCCCEEEEEE
Confidence            45677777788999999999988754110000    00   0   0000000000112232  34567788899999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCC-CCeEEEEEc-----CCCcEEEeecccccceeeeecccc--------------
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCA-----ADGQVRHAQILERGGVETKLLGKH--------------  149 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~~--------------  149 (458)
                      .++|+.+..........-..+.-+|.- ++..++..+     .+|.|.-+|.++++.+........              
T Consensus       137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~  216 (527)
T TIGR03075       137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG  216 (527)
T ss_pred             CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence            999998776532111100111111110 444333322     268899899988876644211110              


Q ss_pred             ---------------ccce-EEEEEcCCCCeEEEEec-C----CC-----------eEEEEeCCCCCccceeeecccCCC
Q 012712          150 ---------------QGRA-HKLAIEPGSPHVFYTCG-E----DG-----------LVQHFDLRTGAATELFTCRPIDDR  197 (458)
Q Consensus       150 ---------------~~~v-~~~~~~~~~~~~l~s~~-~----dg-----------~i~iwd~~~~~~~~~~~~~~~~~~  197 (458)
                                     ...+ ..+++.|.. .+++.+. .    ++           .|.-.|+++++....++..+....
T Consensus       217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w  295 (527)
T TIGR03075       217 EPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEW  295 (527)
T ss_pred             ccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCc
Confidence                           0111 133666655 3444443 1    12           677889999998877765332211


Q ss_pred             CcceeecceEEEEECCCCC--cEEEEecCCCeEEEEecCCCccC
Q 012712          198 RNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                       .........-+....++.  ..++.+..+|.+++.|.++++.+
T Consensus       296 -D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       296 -DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             -cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence             111111122223323332  47889999999999999998864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.71  E-value=7.6e-06  Score=78.08  Aligned_cols=249  Identities=10%  Similarity=0.042  Sum_probs=143.9

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      ..|.++.|..+. +.++.+...|.|.+.|.++......-.           -...|.+++|+|| ...++..+..+++.+
T Consensus        69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~-----------vd~GI~aaswS~D-ee~l~liT~~~tll~  135 (1265)
T KOG1920|consen   69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGN-----------VDNGISAASWSPD-EELLALITGRQTLLF  135 (1265)
T ss_pred             cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeee-----------ccCceEEEeecCC-CcEEEEEeCCcEEEE
Confidence            578889998887 567777888999999887765433222           3346999999998 688888887777665


Q ss_pred             Eec----CCCccC----------CCccCCCCCCCcC-------------CCcccc--ccccceeEEEeCCCCcEEEEe--
Q 012712          231 YDI----RKYKWD----------GSTDFGQPADYFC-------------PPNLIG--DEQVGITGLAFSDQSELLVSY--  279 (458)
Q Consensus       231 ~d~----~~~~~~----------~~~~~~~~~~~~~-------------~~~~~~--~~~~~i~~~~~~~~~~~l~~~--  279 (458)
                      -+-    -..+..          -...+++..+.+.             ......  .-...=+.+.|--||+++|+.  
T Consensus       136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~  215 (1265)
T KOG1920|consen  136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV  215 (1265)
T ss_pred             EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence            332    111111          0001111100000             000000  011223468999999999873  


Q ss_pred             ---cC-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712          280 ---ND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC  355 (458)
Q Consensus       280 ---~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~  355 (458)
                         .+ ..+++||-+. .....                                      -.....  .-.+++| -|.|
T Consensus       216 ~~~~~~RkirV~drEg-~Lns~--------------------------------------se~~~~--l~~~LsW-kPsg  253 (1265)
T KOG1920|consen  216 ESETGTRKIRVYDREG-ALNST--------------------------------------SEPVEG--LQHSLSW-KPSG  253 (1265)
T ss_pred             eccCCceeEEEecccc-hhhcc--------------------------------------cCcccc--cccceee-cCCC
Confidence               23 4699999762 11100                                      000001  1346777 8999


Q ss_pred             cEEEEe---cCCCeEEEEEecCCeEEEE----eecCCceeeEEEecCCCCeEEE---eecCCcEEEecCCccccc--ccc
Q 012712          356 EYVVSG---SDCGRIFIWKKKGGELIRV----IEADRHVVNCIEPHPHSTVLAS---SGIESDIKILTPNAADRA--TLP  423 (458)
Q Consensus       356 ~~l~~~---~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s---~~~d~~i~iw~~~~~~~~--~~~  423 (458)
                      ..+++-   +.|+.|.+|.-+ |-.-..    +.....++..++|+.++..||+   ......|++|.+.+-...  ...
T Consensus       254 s~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l  332 (1265)
T KOG1920|consen  254 SLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL  332 (1265)
T ss_pred             CeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE
Confidence            998874   345679999863 322222    2223345899999999999987   455556999998875221  111


Q ss_pred             cccccEEEEEEecCC-cEEEeeecCCceEEEEEe
Q 012712          424 TNIEQVCFSIYSADY-WWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       424 ~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~~~  456 (458)
                      ...+... +.|+|-- ..|..-..+|...+++|.
T Consensus       333 ~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  333 QFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             ecccccc-ccccCCCceeEEEEecCCcEEEEEEE
Confidence            1111111 7788765 333333467777776664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=1.7e-06  Score=79.16  Aligned_cols=109  Identities=11%  Similarity=0.069  Sum_probs=84.7

Q ss_pred             EEEEEecCCCEEEEecC----CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           65 NTVSFNTDGDILISGSD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        65 ~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      +-.+|+|...++|.++-    .|.|.||- ++|++....  ...-.+++++|+|  ..-.|+.+-.-|.+.+|...+.+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHP--EEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccCh--HHHHHhhccccceeEEEecCCcee
Confidence            34679999999988754    47888885 677754333  2223466799999  877888888889999999766554


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR  181 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  181 (458)
                      -..  ...|+.+|..+.|+++| ..++++..-|.+.+|...
T Consensus        94 htv--~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTV--VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eee--ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            332  55699999999999999 789999999999999765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.69  E-value=5.7e-07  Score=82.70  Aligned_cols=184  Identities=18%  Similarity=0.263  Sum_probs=132.8

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      +..++-|+....+..+|+.+.+..... .-....|.-++.    +++.+.+|...|+|.+-|.++.+.+.+  +..|++.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht--~~aHs~s  219 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHT--FDAHSGS  219 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeee-eccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeee--eeccccc
Confidence            445667777777888898877765544 223334666665    778999999999999999988887766  8999999


Q ss_pred             eEEEEEcCCCCeEEEEecC---------CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          153 AHKLAIEPGSPHVFYTCGE---------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      |..+...  | ++|++++.         |..|++||++..+.+..+..+.           ...-+.|+|.-...+++++
T Consensus       220 iSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-----------~P~flrf~Psl~t~~~V~S  285 (1118)
T KOG1275|consen  220 ISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-----------GPQFLRFHPSLTTRLAVTS  285 (1118)
T ss_pred             eeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCccccc-----------CchhhhhcccccceEEEEe
Confidence            9876654  5 57888765         4568999999887766665432           2245678887667899999


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT  288 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~  288 (458)
                      ..|...+.|..+...        |..   ...........+..+.+++++..++.+. +|.|.+|.
T Consensus       286 ~sGq~q~vd~~~lsN--------P~~---~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  286 QSGQFQFVDTATLSN--------PPA---GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccceeeccccccCC--------Ccc---ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            999999998543321        100   0112222334599999999999999998 67899997

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=9.8e-06  Score=74.47  Aligned_cols=219  Identities=14%  Similarity=0.149  Sum_probs=132.9

Q ss_pred             EEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc-eEEEEEcCCCCeEEEEecCCC-----eEEEEeCCCCC
Q 012712          111 KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR-AHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGA  184 (458)
Q Consensus       111 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~  184 (458)
                      +|++  .+..++.|+.+|.|.+.+-  .-.. ...++.+... +..+ +.-++.++|++.+.|+     .+++|+++..+
T Consensus        30 c~~s--~~~~vvigt~~G~V~~Ln~--s~~~-~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   30 CCSS--STGSVVIGTADGRVVILNS--SFQL-IRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             EEcC--CCceEEEeeccccEEEecc--ccee-eehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4667  8889999999998887763  2111 1225555555 4433 3334446778777664     48999987542


Q ss_pred             c---cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712          185 A---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ  261 (458)
Q Consensus       185 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (458)
                      .   ...+..+............++.+++.+.+ -..+++|-.+|.|..+.-.-.+-.+.           .........
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgs-----------r~~~~~~~~  171 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGS-----------RQDYSHRGK  171 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcccc-----------ceeeeccCC
Confidence            2   11221111111112124557889999987 68999999999999885432211110           111222346


Q ss_pred             cceeEEEeCCCCcE-EEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712          262 VGITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR  340 (458)
Q Consensus       262 ~~i~~~~~~~~~~~-l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (458)
                      .+|+++++..+++. +.+.+...|.+|.+...                                     .+....+..|.
T Consensus       172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr-------------------------------------~p~~~~ld~~G  214 (933)
T KOG2114|consen  172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGR-------------------------------------TPSLKVLDNNG  214 (933)
T ss_pred             CCceeeEEecCCceeEEEEecceeEEEEecCC-------------------------------------CcceeeeccCC
Confidence            79999999999876 55566778999998742                                     11223344443


Q ss_pred             ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee-cCCcee
Q 012712          341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVV  388 (458)
Q Consensus       341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v  388 (458)
                      .  ...|..+ ++....+++++ +.-+.+|+.....+-..+. +|....
T Consensus       215 ~--~lnCss~-~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  215 I--SLNCSSF-SDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             c--cceeeec-CCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence            3  3777777 55444355554 3469999987666666676 665443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.62  E-value=1.3e-05  Score=66.94  Aligned_cols=275  Identities=14%  Similarity=0.111  Sum_probs=146.4

Q ss_pred             CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC----------CCeEEEEE
Q 012712           20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----------DRRVILWD   89 (458)
Q Consensus        20 ~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~i~iwd   89 (458)
                      +.+.+.|..+++.+..                     +.  .+-.-.+..+||++.+++++.          .-.|.+||
T Consensus        17 ~rv~viD~d~~k~lGm---------------------i~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D   73 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGM---------------------ID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWD   73 (342)
T ss_dssp             EEEEEEETTTTEEEEE---------------------EE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ceEEEEECCCCcEEEE---------------------ee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEe
Confidence            3688888887776633                     22  122334668999998887532          34789999


Q ss_pred             CCCcceeeeeccCC--Cc----ceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           90 WKTERVKLSFHSGH--ND----NVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        90 ~~~~~~~~~~~~~~--~~----~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      ..+-.....+.-..  ..    .....+++.  |+++++....  .-.|.|-|+...+.+......+      |...-|.
T Consensus        74 ~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~  145 (342)
T PF06433_consen   74 TQTLSPTGEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPS  145 (342)
T ss_dssp             TTTTEEEEEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEE
T ss_pred             cCcCcccceEecCCcchheecccccceEEcc--CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEec
Confidence            99887666542221  11    223456677  7777766543  4567788887766554433322      2233344


Q ss_pred             CCeEEEEecCCCeEEEEeCC-CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG  240 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  240 (458)
                      ++.-|.+-|.||.+.-..+. .|+......  ......   ....+..-++... +..++--+.+|.|+-.|+......-
T Consensus       146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t--~~F~~~---~dp~f~~~~~~~~-~~~~~F~Sy~G~v~~~dlsg~~~~~  219 (342)
T PF06433_consen  146 GNRGFSMLCGDGSLLTVTLDADGKEAQKST--KVFDPD---DDPLFEHPAYSRD-GGRLYFVSYEGNVYSADLSGDSAKF  219 (342)
T ss_dssp             ETTEEEEEETTSCEEEEEETSTSSEEEEEE--EESSTT---TS-B-S--EEETT-TTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred             CCCceEEEecCCceEEEEECCCCCEeEeec--cccCCC---CcccccccceECC-CCeEEEEecCCEEEEEeccCCcccc
Confidence            44558888999999999887 455432211  111000   1101122233333 3344446788889888887654211


Q ss_pred             CccCCCCCCCcCCCcccc-------ccccceeEEEeCCCCcEEEEe-c---CC-------cEEEEEccCCCCCCCCCCCC
Q 012712          241 STDFGQPADYFCPPNLIG-------DEQVGITGLAFSDQSELLVSY-N---DE-------FIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~-~---~~-------~i~i~~~~~~~~~~~~~~~~  302 (458)
                      .    .      +..+..       =..+.-.-+++++....|... .   ++       .|.+||+.+           
T Consensus       220 ~----~------~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-----------  278 (342)
T PF06433_consen  220 G----K------PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-----------  278 (342)
T ss_dssp             E----E------EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-----------
T ss_pred             c----C------cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-----------
Confidence            0    0      000000       011233456676544333321 1   11       266666665           


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEe-cCCCeEEEEEecCCeEEEE
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSG-SDCGRIFIWKKKGGELIRV  380 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~  380 (458)
                                                 ++.+..+....   .+.++.. +.+.+ +|++. ..++.+.+||..+|+++++
T Consensus       279 ---------------------------~krv~Ri~l~~---~~~Si~V-sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  279 ---------------------------HKRVARIPLEH---PIDSIAV-SQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             ---------------------------TEEEEEEEEEE---EESEEEE-ESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             ---------------------------CeEEEEEeCCC---ccceEEE-ccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence                                       33344443211   3667887 77766 55443 4579999999999999998


Q ss_pred             eec
Q 012712          381 IEA  383 (458)
Q Consensus       381 ~~~  383 (458)
                      +..
T Consensus       328 ~~~  330 (342)
T PF06433_consen  328 IEQ  330 (342)
T ss_dssp             E--
T ss_pred             hhc
Confidence            874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.61  E-value=5.6e-08  Score=85.60  Aligned_cols=206  Identities=16%  Similarity=0.158  Sum_probs=133.2

Q ss_pred             CCceEEEEEecC--CCEEEEecCCCeEEEEECCCccee-eeeccCCCcceeEEEEccCCCCeEEEEEcC----CCcEEEe
Q 012712           61 RGCVNTVSFNTD--GDILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHA  133 (458)
Q Consensus        61 ~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----dg~i~vw  133 (458)
                      ...+.|+++.-+  ...++.|..+|.|-+-.+....-. ..+..+|....++++|.+. |.+.||.|-.    |..+.+|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc-cHHHHHhhhhhhcccCCccce
Confidence            345677776543  457889999999999887654433 4455788889999999984 6677777643    5679999


Q ss_pred             ecccc--cceeeeeccc-cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCcceeecceEEE
Q 012712          134 QILER--GGVETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       134 ~~~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      |+.+.  .+.....+.+ ......+++|..+. .++++|.....+.++|++.... ...+            ....+..+
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~sv------------nTk~vqG~  201 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSV------------NTKYVQGI  201 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhh------------hhhhcccc
Confidence            99876  2222211222 33456688888776 6888888888999999985432 2222            22245677


Q ss_pred             EECCCCCcEEEEecCCCeEEEEe-cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEecCC--cEE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDE--FIY  285 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~--~i~  285 (458)
                      ..+|-.++++++-. ||.|.+|| .+.-+.        |+..  ...-.......+..++|.|... ++++.+.+  .|+
T Consensus       202 tVdp~~~nY~cs~~-dg~iAiwD~~rnien--------pl~~--i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr  270 (783)
T KOG1008|consen  202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--------PLQI--ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR  270 (783)
T ss_pred             eecCCCCCceeccc-cCceeeccchhhhcc--------HHHH--HhhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence            77885467887655 99999999 333221        1000  0000111123588999999643 55555544  689


Q ss_pred             EEEccC
Q 012712          286 LFTQDM  291 (458)
Q Consensus       286 i~~~~~  291 (458)
                      +|++..
T Consensus       271 lydi~~  276 (783)
T KOG1008|consen  271 LYDICV  276 (783)
T ss_pred             Eecccc
Confidence            998865

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.57  E-value=9.4e-06  Score=72.13  Aligned_cols=190  Identities=18%  Similarity=0.123  Sum_probs=113.9

Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCC---CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      +..-...+..-+|+|++..+.+..-..   ..+.++|+.+++.......           ...-..-+|+||+..++++.
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-----------~g~~~~P~fspDG~~l~f~~  256 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-----------NGNNGAPAFSPDGSKLAFSS  256 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-----------CCccCCccCCCCCCEEEEEE
Confidence            333445566778999986544432222   3599999999887666652           22335668999977777777


Q ss_pred             cCCCe--EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEccCCCCCC
Q 012712          223 GSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPN  296 (458)
Q Consensus       223 ~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~~~~~~~~  296 (458)
                      ..||.  |+++|+.......                .....+.-..-.|+|||+.++..++.    .|++++.+....  
T Consensus       257 ~rdg~~~iy~~dl~~~~~~~----------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--  318 (425)
T COG0823         257 SRDGSPDIYLMDLDGKNLPR----------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--  318 (425)
T ss_pred             CCCCCccEEEEcCCCCccee----------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--
Confidence            77776  5556666654211                11122333366899999999988743    377777765321  


Q ss_pred             CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCe--EEEEEec
Q 012712          297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGR--IFIWKKK  373 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~--i~iwd~~  373 (458)
                                                           ..+.......  ..-.+ +|||++++..+. +|.  |.+.|+.
T Consensus       319 -------------------------------------~riT~~~~~~--~~p~~-SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         319 -------------------------------------TRLTFSGGGN--SNPVW-SPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             -------------------------------------eEeeccCCCC--cCccC-CCCCCEEEEEeccCCceeeEEeccC
Confidence                                                 1121111110  12334 999999987664 344  6666766


Q ss_pred             CCeEEEEeecCCceeeEEEecCCCCeEEEeec
Q 012712          374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGI  405 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  405 (458)
                      ++..++.+. +......-.|.|+++.+...+.
T Consensus       359 ~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         359 SGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            665444443 3333456678888887765543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.56  E-value=8.7e-06  Score=73.76  Aligned_cols=101  Identities=8%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             cCCCcEEEEecCCCeEEEEEecC-----CeEEEEeecCCceeeEEEecCCCCeEEEee-cCCcEEEecCCcccc------
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKG-----GELIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPNAADR------  419 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~------  419 (458)
                      .++|++...+  +++|.+.|..+     .+.+..+. -......+.++|||+++++++ .+.++.|.|+...+.      
T Consensus       285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            6688877763  67899999987     34555554 334578899999999877655 489999999987542      


Q ss_pred             ------cccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          420 ------ATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       420 ------~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                            .....-...-...+|.++|....|--.|..|..|++
T Consensus       362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence                  111111223456789999987778888999999985

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.56  E-value=4.8e-05  Score=67.02  Aligned_cols=279  Identities=14%  Similarity=0.111  Sum_probs=137.4

Q ss_pred             ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc---c
Q 012712           63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER---G  139 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~---~  139 (458)
                      .|+.+.|+++..-|+.|...|.|.||.+...+.-..   .-..+-..+.+.++.        ..++.-.+-|+...   .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~   71 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPS   71 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S----------GGGSS-SEEE-GGG--TT
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCccccccc--------ccCCCcceEEehhhCCcc
Confidence            488999999988999999999999998765443210   011111222222210        01111222333221   1


Q ss_pred             ----ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC--
Q 012712          140 ----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--  213 (458)
Q Consensus       140 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--  213 (458)
                          ......+....++|++++.+.-|  +++.|..+|.+.+.|+|.+..+..-....  ..........++++.|..  
T Consensus        72 ~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~--~~~~~~~~~~vt~ieF~vm~  147 (395)
T PF08596_consen   72 LKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE--SFLSKSSSSYVTSIEFSVMT  147 (395)
T ss_dssp             -SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEEEEEEE
T ss_pred             cccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccc--cccccccccCeeEEEEEEEe
Confidence                12222344557899999998777  67889999999999999887665533332  011111334567777751  


Q ss_pred             --CCC---cEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEE-eCCC--------------
Q 012712          214 --RNA---NLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA-FSDQ--------------  272 (458)
Q Consensus       214 --~~~---~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~--------------  272 (458)
                        +++   -.+++|+..|.+.+|.+.- ..-.....+         ......+..+|..+. ++.+              
T Consensus       148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~---------~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~  218 (395)
T PF08596_consen  148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQF---------AGATTNHDSPILSIIPINADTGESALATISAMQG  218 (395)
T ss_dssp             -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEE---------EEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred             cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEE---------eeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence              112   4788899999999998752 110000000         000111223333332 2111              


Q ss_pred             -------CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712          273 -------SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV  345 (458)
Q Consensus       273 -------~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  345 (458)
                             ..+++.+++..++++...+.+.                                     ..+.+..+.   ..
T Consensus       219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~-------------------------------------~~K~~~~~~---~~  258 (395)
T PF08596_consen  219 LSKGISIPGYVVVVSESDIRVFKPPKSKG-------------------------------------AHKSFDDPF---LC  258 (395)
T ss_dssp             GGGT----EEEEEE-SSEEEEE-TT---E-------------------------------------EEEE-SS-E---EE
T ss_pred             cccCCCcCcEEEEEcccceEEEeCCCCcc-------------------------------------cceeecccc---cc
Confidence                   1266777777888888765311                                     112221111   12


Q ss_pred             eEEEEe----cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCC----ceeeEEEecCCCCeEEEeec
Q 012712          346 KGVNFF----GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR----HVVNCIEPHPHSTVLASSGI  405 (458)
Q Consensus       346 ~~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~  405 (458)
                      ..+.+.    ...+..|++-..+|.+++|.+..-+.+..++-..    ..+....++++|..++-.+.
T Consensus       259 ~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  259 SSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             EEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             ceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence            233331    2356678888899999999999988888776532    34567788999997766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=3.1e-05  Score=71.35  Aligned_cols=198  Identities=14%  Similarity=0.223  Sum_probs=127.7

Q ss_pred             ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcc-eeEEEEccCCCCeEEEEEcCCCc-----EEEeecc
Q 012712           63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-VFQAKIMPFTDDRSIVTCAADGQ-----VRHAQIL  136 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~l~s~~~dg~-----i~vw~~~  136 (458)
                      .|+|  |++.+..++.|+.+|.|.+.+- .......+ ..+... |..+....  +.++|++.+.|+.     +++|+++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEeccc
Confidence            4444  6778889999999998887763 23333445 455555 44444433  4478888877654     8999986


Q ss_pred             cccc------eeeeecc-----ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC---CCCccceeeecccCCCCccee
Q 012712          137 ERGG------VETKLLG-----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYMT  202 (458)
Q Consensus       137 ~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~  202 (458)
                      .-+.      .....+.     ....++.+++.+.+- ..+++|-.+|.|..+.=.   .......+         .|..
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~---------~~~~  170 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDY---------SHRG  170 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceee---------eccC
Confidence            5321      1011111     235678899999887 788999999999888421   11111111         1225


Q ss_pred             ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                      ..+|+.+++..++...+++++ ...|.+|.+....              ........+.....|-.+++....+++++..
T Consensus       171 ~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~--------------p~~~~ld~~G~~lnCss~~~~t~qfIca~~e  235 (933)
T KOG2114|consen  171 KEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT--------------PSLKVLDNNGISLNCSSFSDGTYQFICAGSE  235 (933)
T ss_pred             CCCceeeEEecCCceeEEEEe-cceeEEEEecCCC--------------cceeeeccCCccceeeecCCCCccEEEecCc
Confidence            668999999987444334333 3469999987432              0123355567788999998877768888888


Q ss_pred             cEEEEEccC
Q 012712          283 FIYLFTQDM  291 (458)
Q Consensus       283 ~i~i~~~~~  291 (458)
                      .+.+|+...
T Consensus       236 ~l~fY~sd~  244 (933)
T KOG2114|consen  236 FLYFYDSDG  244 (933)
T ss_pred             eEEEEcCCC
Confidence            899999765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=6.9e-06  Score=75.34  Aligned_cols=110  Identities=17%  Similarity=0.260  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCeEEEEec----CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712          153 AHKLAIEPGSPHVFYTCG----EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT  228 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  228 (458)
                      -+-..|+|..| +|+.++    ..|.|.|| .++|++.....           .+..+.+++|+|. .-.|+.|-.-|.+
T Consensus        18 sti~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt-----------~P~hatSLCWHpe-~~vLa~gwe~g~~   83 (1416)
T KOG3617|consen   18 STISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVT-----------YPVHATSLCWHPE-EFVLAQGWEMGVS   83 (1416)
T ss_pred             ccccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccc-----------cceehhhhccChH-HHHHhhcccccee
Confidence            34467899885 566554    35788888 35666544333           2234678999997 6788888899999


Q ss_pred             EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712          229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM  291 (458)
Q Consensus       229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~  291 (458)
                      .+|...+.+.               ......|..+|..+.|||+|..++++. -+.+.+|....
T Consensus        84 ~v~~~~~~e~---------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   84 DVQKTNTTET---------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EEEecCCcee---------------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            9999887652               345556889999999999999999988 45789998774

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.53  E-value=0.00012  Score=66.07  Aligned_cols=120  Identities=16%  Similarity=0.162  Sum_probs=90.1

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      |...|.--+++..+++++.|+.-|.+.+|+-..++....-..+..+.+.....++  +..++|.|+..|.|.++.+....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhccC
Confidence            4455555566777899999999999999997776654433233445566677787  78888889999999999887643


Q ss_pred             ceee----eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC
Q 012712          140 GVET----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT  182 (458)
Q Consensus       140 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  182 (458)
                      ....    ..-..|...|++++|++++ ..+++|...|.|..-.+..
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence            3211    1123477899999999999 6799999999999888877

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.51  E-value=0.00042  Score=63.99  Aligned_cols=312  Identities=11%  Similarity=0.063  Sum_probs=160.7

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCC-----ccee--EEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHN-----DNVF--QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL  145 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~i~--~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  145 (458)
                      +..+..++.++.|.-.|..+++.+.++.....     ..+.  .+...   ++..++.++.+|.|.-+|.++++.+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            44566777789999999999988776632211     0010  11111   32678888889999999999998876644


Q ss_pred             ccccc---cce-EEEEEcCCCCeEEEEec---------CCCeEEEEeCCCCCccceeeecccCC--CCcce--------e
Q 012712          146 LGKHQ---GRA-HKLAIEPGSPHVFYTCG---------EDGLVQHFDLRTGAATELFTCRPIDD--RRNYM--------T  202 (458)
Q Consensus       146 ~~~~~---~~v-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~--------~  202 (458)
                      ...+.   ..+ ....+.. +  +++.++         .++.+..+|..+++....+.......  .+...        .
T Consensus       138 ~~~~~~~~~~i~ssP~v~~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  214 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVK-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG  214 (488)
T ss_pred             CCCCcCcceEecCCCEEEC-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence            43321   001 1111221 2  344443         46889999999999877665421100  00000        0


Q ss_pred             ecce-EEEEECCCCCcEEEEecCCC------------------eEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712          203 VVNL-NAIAIDPRNANLFAVAGSDE------------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG  263 (458)
Q Consensus       203 ~~~v-~~~~~~p~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      ...+ ...++.+. +..++.++.++                  .|.-+|..+++..-..+...+...     .......+
T Consensus       215 g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~-----~~~~~s~p  288 (488)
T cd00216         215 GGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW-----DYDGPNQP  288 (488)
T ss_pred             CCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc-----ccccCCCC
Confidence            0001 13445554 35677776555                  688889988875443222111000     00000000


Q ss_pred             -eeEEEeCCCCc---EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          264 -ITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       264 -i~~~~~~~~~~---~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                       +..+. .-+|.   .++.++ ++.++.+|..+++........                                     
T Consensus       289 ~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------------------------------------  330 (488)
T cd00216         289 SLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------------------------------------  330 (488)
T ss_pred             eEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------------------------------------
Confidence             11110 11232   344444 667999999887655442210                                     


Q ss_pred             ccceeeeeEEEEecCC----------------CcEEEEecCCCeEEEEEecCCeEEEEeecCC--------cee--eEEE
Q 012712          339 HRNCVTVKGVNFFGPK----------------CEYVVSGSDCGRIFIWKKKGGELIRVIEADR--------HVV--NCIE  392 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~v--~~~~  392 (458)
                            ...++. +|+                ...+.....+|.+.-.|+.+|+.+-+.....        .+.  ..++
T Consensus       331 ------~~~~~~-~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~  403 (488)
T cd00216         331 ------EQPMAY-DPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA  403 (488)
T ss_pred             ------cccccc-CCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence                  000011 110                0011112245677777777777665543220        111  1122


Q ss_pred             ecCCCCeEEEeecCCcEEEecCCcccccccccccccEEE--EEEecCC-cEEEe
Q 012712          393 PHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCF--SIYSADY-WWSKS  443 (458)
Q Consensus       393 ~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~--~~~s~d~-~~l~s  443 (458)
                        ..+..|+.++.||.|+.+|..+++.+-...-.+.+.+  +.+..+| .|+++
T Consensus       404 --~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~  455 (488)
T cd00216         404 --TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGV  455 (488)
T ss_pred             --ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEE
Confidence              2457788889999999999999987633333333322  3345566 44444

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.48  E-value=4.2e-05  Score=68.10  Aligned_cols=174  Identities=11%  Similarity=0.115  Sum_probs=103.7

Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc---CC-CcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA---AD-GQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---~d-g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      .+.+=|.+ +.....+ ..-...+..-+|+|  ++..++...   .. ..+.++++.+++......+.++   -..-+|+
T Consensus       174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fs  246 (425)
T COG0823         174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFS  246 (425)
T ss_pred             eEEEEccC-CcceeEe-cccCcceeccccCc--CCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCC
Confidence            33444433 3333333 33445677788999  888776543   22 3588999988876655333333   3457899


Q ss_pred             CCCCeEEEEecCCCe--EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE--ecCC
Q 012712          160 PGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY--DIRK  235 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~--d~~~  235 (458)
                      |+|++++++...||.  |.+.|+..+...+ +..          ..+.-..-.|+||+..++++.+..|.-.||  +...
T Consensus       247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g  315 (425)
T COG0823         247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG  315 (425)
T ss_pred             CCCCEEEEEECCCCCccEEEEcCCCCccee-ccc----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence            999888888888886  5566777766333 211          111122567999976666777777765444  5444


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCc--EEEEEccC
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEF--IYLFTQDM  291 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~--i~i~~~~~  291 (458)
                      ....               .+. .....-..-.|+|||++|+..+  ++.  |.+.++.+
T Consensus       316 ~~~~---------------riT-~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         316 SQVT---------------RLT-FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             Ccee---------------Eee-ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            3310               011 1111122677999999998776  343  66666554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.47  E-value=5e-05  Score=66.89  Aligned_cols=266  Identities=13%  Similarity=0.090  Sum_probs=138.5

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEcccccccc-c--------cccc------------cc-cccccceEEeeeeeEeecC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLST-R--------NFAL------------RR-RASEDLVLRLGIYAKLDKH   60 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~-~--------~~~~------------~~-~~~~~~~~~~~~~~~~~~h   60 (458)
                      .+++.+...-|++|...|.|-||.....+.-. +        .+.+            +- .........+.+...++..
T Consensus         6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~   85 (395)
T PF08596_consen    6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK   85 (395)
T ss_dssp             EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred             EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence            45677888889999999999999988654443 1        0000            00 0111112335666667777


Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec-------cCCCcceeEEEEccC---CCC---eEEEEEcCC
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-------SGHNDNVFQAKIMPF---TDD---RSIVTCAAD  127 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~i~~~~~~~~---~~~---~~l~s~~~d  127 (458)
                      .++|++++.|.- -++|.|..+|.+.|.|++....+..-.       ......++++.|+..   .|+   -.+++|...
T Consensus        86 ~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   86 QGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            999999999854 499999999999999998766554421       123446888888731   133   467888889


Q ss_pred             CcEEEeeccc-ccceee---e-eccccccceEEEE-EcCCC--------------------CeEEEEecCCCeEEEEeCC
Q 012712          128 GQVRHAQILE-RGGVET---K-LLGKHQGRAHKLA-IEPGS--------------------PHVFYTCGEDGLVQHFDLR  181 (458)
Q Consensus       128 g~i~vw~~~~-~~~~~~---~-~~~~~~~~v~~~~-~~~~~--------------------~~~l~s~~~dg~i~iwd~~  181 (458)
                      |.+.+|.+.- ......   . ....+.+++..+. ++.+.                    +.+++. ..+..++++...
T Consensus       165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~  243 (395)
T PF08596_consen  165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPP  243 (395)
T ss_dssp             SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT
T ss_pred             CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCC
Confidence            9999998852 211111   0 1123445555544 32110                    123333 345679999887


Q ss_pred             CCCccceeeecccCCCCcceeecceEEEEEC----CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          182 TGAATELFTCRPIDDRRNYMTVVNLNAIAID----PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      +.+.......          .......+.+-    ..++..|++-..+|.+++|.+...+......+.           .
T Consensus       244 ~~k~~~K~~~----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~-----------~  302 (395)
T PF08596_consen  244 KSKGAHKSFD----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP-----------P  302 (395)
T ss_dssp             ---EEEEE-S----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S-----------S
T ss_pred             CCcccceeec----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC-----------C
Confidence            7665333221          11122233332    113567888889999999999887755443221           1


Q ss_pred             cccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712          258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~  291 (458)
                      ......+....++++|..++-.+...+.++.+-.
T Consensus       303 ~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~  336 (395)
T PF08596_consen  303 PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG  336 (395)
T ss_dssp             ---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred             ccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence            1122345567789999988877766655555443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.40  E-value=0.00065  Score=57.87  Aligned_cols=146  Identities=14%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee-----
Q 012712           71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL-----  145 (458)
Q Consensus        71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~-----  145 (458)
                      ..++.|+.|..+| +.+++..........  .+...|..+...|  +-+.|+.-+ |+.+.++++..-.......     
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            3578899998888 899998333333333  2334499999998  777766665 4999999987654433110     


Q ss_pred             -------ccccccceEEEE--EcCCCCeEEEEecCCCeEEEEeCCCC-----CccceeeecccCCCCcceeecceEEEEE
Q 012712          146 -------LGKHQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTG-----AATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       146 -------~~~~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                             .......+...+  -...+... ++......|.+|.....     +..+.+.           -...+.+++|
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~-L~va~kk~i~i~~~~~~~~~f~~~~ke~~-----------lp~~~~~i~~  146 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRR-LCVAVKKKILIYEWNDPRNSFSKLLKEIS-----------LPDPPSSIAF  146 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceE-EEEEECCEEEEEEEECCcccccceeEEEE-----------cCCCcEEEEE
Confidence                   011223344444  11233233 44444558888887664     2223333           2346889999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          212 DPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      .+   +.++.|..++ ..+.|+.++..
T Consensus       147 ~~---~~i~v~~~~~-f~~idl~~~~~  169 (275)
T PF00780_consen  147 LG---NKICVGTSKG-FYLIDLNTGSP  169 (275)
T ss_pred             eC---CEEEEEeCCc-eEEEecCCCCc
Confidence            84   3677776554 78889986653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.38  E-value=0.00074  Score=60.21  Aligned_cols=88  Identities=11%  Similarity=0.009  Sum_probs=67.5

Q ss_pred             EEEEecCCeEE--EEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEee
Q 012712          368 FIWKKKGGELI--RVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQ  444 (458)
Q Consensus       368 ~iwd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  444 (458)
                      .+|+....+..  ... -.....|.+++++|+...|+.|+.||.|.+||...+..... ...-..+.++|+|+|..++.|
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~  317 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVG  317 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEE
Confidence            46666544322  111 13567899999999999999999999999999877633322 333457889999999999999


Q ss_pred             ecCCceEEEEEe
Q 012712          445 NFSCSILLFEWL  456 (458)
Q Consensus       445 ~~d~~i~~w~~~  456 (458)
                      +.-|.+.+||.-
T Consensus       318 s~qGelQ~FD~A  329 (545)
T PF11768_consen  318 SEQGELQCFDMA  329 (545)
T ss_pred             cCCceEEEEEee
Confidence            999999999963

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.38  E-value=3.8e-07  Score=80.56  Aligned_cols=202  Identities=17%  Similarity=0.177  Sum_probs=127.7

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEec---
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS---   80 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~---   80 (458)
                      +|..+...++.|..+|.|-+-.+....--.                   .....+|....++++|++ |.+.||.|-   
T Consensus        65 ~y~~d~cIlavG~atG~I~l~s~r~~hdSs-------------------~E~tp~~ar~Ct~lAwneLDtn~LAagldkh  125 (783)
T KOG1008|consen   65 FYGNDRCILAVGSATGNISLLSVRHPHDSS-------------------AEVTPGYARPCTSLAWNELDTNHLAAGLDKH  125 (783)
T ss_pred             hcCCchhhhhhccccCceEEeecCCccccc-------------------ceecccccccccccccccccHHHHHhhhhhh
Confidence            455556678888888888877665221110                   112457889999999998 557777763   


Q ss_pred             -CCCeEEEEECCCc--ce--eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEE
Q 012712           81 -DDRRVILWDWKTE--RV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK  155 (458)
Q Consensus        81 -~d~~i~iwd~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~  155 (458)
                       .|..+.|||+.++  .+  ...+..+......+++|..  +.+++.+|.....+.++|++......   ..-.+..+..
T Consensus       126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr--d~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vqG  200 (783)
T KOG1008|consen  126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR--DTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQG  200 (783)
T ss_pred             cccCCccceecccccCCCccccccccccccCcccccccc--Ccchhhcccccchhhhhhhhhhhhhh---hhhhhhhccc
Confidence             3568999999876  22  1222122344566889987  88999999998899999987432211   1112345666


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeC-CCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEEEEe
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDL-RTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLYD  232 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d  232 (458)
                      +...|-.+.++++ ..||.|.+||. +.-+ +...+...+..      ....+..++|.|.....+++...| ++|++||
T Consensus       201 ~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~------~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  201 ITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENK------KPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             ceecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCCC------cccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            7788844456554 45999999993 3222 22222111110      112578999999855566666644 6899999


Q ss_pred             cCCCc
Q 012712          233 IRKYK  237 (458)
Q Consensus       233 ~~~~~  237 (458)
                      +....
T Consensus       274 i~~v~  278 (783)
T KOG1008|consen  274 ICVVG  278 (783)
T ss_pred             ccccC
Confidence            87543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.37  E-value=0.0012  Score=56.76  Aligned_cols=275  Identities=16%  Similarity=0.178  Sum_probs=125.8

Q ss_pred             EEecCCCEEEEecC-C--CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712           68 SFNTDGDILISGSD-D--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK  144 (458)
Q Consensus        68 ~~s~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  144 (458)
                      +|.+||+.|+-++. |  ..+.+-|+.+++..+-. .+..........+|  +++.++-......++-.|+.+.+.....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~--~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSP--DDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-T--TSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEec--CCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            46788976665544 4  46777788888875544 22223344567778  7777766555567888888887654432


Q ss_pred             eccccccceEEEEE--cCCCCeEEEEec----------------------CCCeEEEEeCCCCCccceeeecccCCCCcc
Q 012712          145 LLGKHQGRAHKLAI--EPGSPHVFYTCG----------------------EDGLVQHFDLRTGAATELFTCRPIDDRRNY  200 (458)
Q Consensus       145 ~~~~~~~~v~~~~~--~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  200 (458)
                      .+  ....+-...|  +.++ ..++-.-                      -...|...|+.+++....+.          
T Consensus       119 ~~--p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~----------  185 (386)
T PF14583_consen  119 EV--PDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE----------  185 (386)
T ss_dssp             E----TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE----------
T ss_pred             EC--CcccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe----------
Confidence            23  3333333344  3444 3332211                      11346666777777655554          


Q ss_pred             eeecceEEEEECCCCCcEEEEecCC---C-eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712          201 MTVVNLNAIAIDPRNANLFAVAGSD---E-YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL  276 (458)
Q Consensus       201 ~~~~~v~~~~~~p~~~~~l~~~~~d---g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  276 (458)
                       ....+.-+.|+|.++.+|+-|-+.   . .-|+|-+++......     +      .. .......+..=-|.|||..|
T Consensus       186 -~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~-----~------v~-~~~~~e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  186 -DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK-----K------VH-RRMEGESVGHEFWVPDGSTI  252 (386)
T ss_dssp             -ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E-----E------SS----TTEEEEEEEE-TTSS-E
T ss_pred             -cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce-----e------ee-cCCCCcccccccccCCCCEE
Confidence             444678889999877777776432   2 125565543321100     0      00 00112334445688999866


Q ss_pred             EEec---CC---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712          277 VSYN---DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF  350 (458)
Q Consensus       277 ~~~~---~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  350 (458)
                      ..-+   .+   .|.-+|..++.                                      . ..+....   ....+..
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~--------------------------------------~-~~~~~~p---~~~H~~s  290 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGE--------------------------------------R-RRLMEMP---WCSHFMS  290 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT----------------------------------------E-EEEEEE----SEEEEEE
T ss_pred             EEEeecCCCCceEEEeeCCCCCC--------------------------------------c-eEEEeCC---ceeeeEE
Confidence            5422   12   25555555421                                      0 1111111   1122333


Q ss_pred             ecCCCcEEEEecCC----------------CeEEEEEecCCeEEEE---------eecCCc-eeeEEEecCCCCeEE-Ee
Q 012712          351 FGPKCEYVVSGSDC----------------GRIFIWKKKGGELIRV---------IEADRH-VVNCIEPHPHSTVLA-SS  403 (458)
Q Consensus       351 ~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~---------~~~~~~-~v~~~~~s~~~~~l~-s~  403 (458)
                       ++||++++-=+.|                --|++++++.++....         +.++.. .=....|+|||++++ ++
T Consensus       291 -s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~S  369 (386)
T PF14583_consen  291 -SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRS  369 (386)
T ss_dssp             --TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE
T ss_pred             -cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEEC
Confidence             7898888742222                1566788876654321         111111 124578999999765 45


Q ss_pred             ecCCcEEEecC
Q 012712          404 GIESDIKILTP  414 (458)
Q Consensus       404 ~~d~~i~iw~~  414 (458)
                      ...|...||-+
T Consensus       370 d~~G~~~vY~v  380 (386)
T PF14583_consen  370 DMEGPPAVYLV  380 (386)
T ss_dssp             -TTSS-EEEEE
T ss_pred             CCCCCccEEEE
Confidence            56777777644

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.36  E-value=0.00031  Score=62.88  Aligned_cols=220  Identities=13%  Similarity=0.066  Sum_probs=117.0

Q ss_pred             cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712          149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT  228 (458)
Q Consensus       149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  228 (458)
                      .......+.++|+++ .++. +.||...++........               ..+....++|.+.  +.+|+-..++.|
T Consensus        31 ~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r~k---------------~~G~g~~~vw~~~--n~yAv~~~~~~I   91 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWRNK---------------AFGSGLSFVWSSR--NRYAVLESSSTI   91 (443)
T ss_dssp             -SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTEEE---------------EEEE-SEEEE-TS--SEEEEE-TTS-E
T ss_pred             CCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCccc---------------ccCceeEEEEecC--ccEEEEECCCeE
Confidence            444578899999994 4444 55788888873322211               2224567889984  457777778889


Q ss_pred             EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      .++.--+.+....              +..  ...+..+-.   |.+|...+++.|.+||..++                
T Consensus        92 ~I~kn~~~~~~k~--------------i~~--~~~~~~If~---G~LL~~~~~~~i~~yDw~~~----------------  136 (443)
T PF04053_consen   92 KIYKNFKNEVVKS--------------IKL--PFSVEKIFG---GNLLGVKSSDFICFYDWETG----------------  136 (443)
T ss_dssp             EEEETTEE-TT---------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT-----------------
T ss_pred             EEEEcCccccceE--------------EcC--CcccceEEc---CcEEEEECCCCEEEEEhhHc----------------
Confidence            9963222221111              110  112333332   88888888889999999873                


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-----------eE
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-----------EL  377 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------~~  377 (458)
                                            ..++.+...    .|..+.| +++|.+++..+.+ .+++++.+..           ..
T Consensus       137 ----------------------~~i~~i~v~----~vk~V~W-s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~  188 (443)
T PF04053_consen  137 ----------------------KLIRRIDVS----AVKYVIW-SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDA  188 (443)
T ss_dssp             -----------------------EEEEESS-----E-EEEEE--TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGG
T ss_pred             ----------------------ceeeEEecC----CCcEEEE-ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhc
Confidence                                  344444422    2678888 9999999988755 6777765322           02


Q ss_pred             EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          378 IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       378 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ...+..-...|.+.+|..|  .++-.... .|+-  +-+|+...+..-..++.=+.+.|....+.....|+.|..+..
T Consensus       189 f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  189 FELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             EEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             eEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            3333322457889999766  44433333 6666  455555544444556777778887777777788888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.33  E-value=0.00046  Score=61.85  Aligned_cols=231  Identities=13%  Similarity=0.148  Sum_probs=115.7

Q ss_pred             CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712          104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG  183 (458)
Q Consensus       104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  183 (458)
                      .-....+.++|  +++.++.++ +|...++.....+..       ..+.....+|.+.+  .+++-...+.|.++.--..
T Consensus        32 ~~~p~~ls~np--ngr~v~V~g-~geY~iyt~~~~r~k-------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   32 EIYPQSLSHNP--NGRFVLVCG-DGEYEIYTALAWRNK-------AFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             SS--SEEEE-T--TSSEEEEEE-TTEEEEEETTTTEEE-------EEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE
T ss_pred             CcCCeeEEECC--CCCEEEEEc-CCEEEEEEccCCccc-------ccCceeEEEEecCc--cEEEEECCCeEEEEEcCcc
Confidence            34578999999  999988855 677778773222211       22455678899855  3676666888999632222


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG  263 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      +....+..           ...+..+-.    |.+|...+.+ .|.+||..+++......                 -.+
T Consensus       100 ~~~k~i~~-----------~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~-----------------v~~  146 (443)
T PF04053_consen  100 EVVKSIKL-----------PFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRID-----------------VSA  146 (443)
T ss_dssp             -TT----------------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES-----------------S-E
T ss_pred             ccceEEcC-----------CcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEe-----------------cCC
Confidence            22223321           112333332    4566665544 89999999887543311                 124


Q ss_pred             eeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc--CceeecCccc
Q 012712          264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI--APQVYKGHRN  341 (458)
Q Consensus       264 i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  341 (458)
                      |..+.|+++|++++..+++.+++++.+......                             ....+.  ....+  |+-
T Consensus       147 vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~-----------------------------~~~~g~e~~f~~~--~E~  195 (443)
T PF04053_consen  147 VKYVIWSDDGELVALVTKDSIYILKYNLEAVAA-----------------------------IPEEGVEDAFELI--HEI  195 (443)
T ss_dssp             -EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH-----------------------------BTTTB-GGGEEEE--EEE
T ss_pred             CcEEEEECCCCEEEEEeCCeEEEEEecchhccc-----------------------------ccccCchhceEEE--EEe
Confidence            799999999999999999998888755310000                             000000  11112  221


Q ss_pred             eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      ...|.+.+| ..+  .++..+.. .++.  +-.|+. .++..-..++.=+...|..+.+.....|+.+..+.+...
T Consensus       196 ~~~IkSg~W-~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  196 SERIKSGCW-VED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             -S--SEEEE-ETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             cceeEEEEE-EcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            224888888 444  44434334 6665  334432 233323456777778887788888889999998877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.32  E-value=0.00049  Score=56.22  Aligned_cols=222  Identities=12%  Similarity=0.115  Sum_probs=112.2

Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      +.+.+-...+..++|+|+...++++....+.|..++.+ ++.+..+....         ....-.+++..+ +.++++--
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---------~~D~EgI~y~g~-~~~vl~~E   83 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---------FGDYEGITYLGN-GRYVLSEE   83 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------SSEEEEEE-ST-TEEEEEET
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---------CCCceeEEEECC-CEEEEEEc
Confidence            34666667799999999876888888888999888864 67766665432         224677888765 56666666


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCC
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~  302 (458)
                      .++.+.++++......-...   ....+ .......++..+..++|+|.+..|..+.+. -..+|.+........+.   
T Consensus        84 r~~~L~~~~~~~~~~~~~~~---~~~~~-~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~---  156 (248)
T PF06977_consen   84 RDQRLYIFTIDDDTTSLDRA---DVQKI-SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF---  156 (248)
T ss_dssp             TTTEEEEEEE----TT--EE---EEEEE-E---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E---
T ss_pred             CCCcEEEEEEeccccccchh---hceEE-ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee---
Confidence            68999999985432110000   00000 001112345678999999986655555543 45666655411000000   


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELIRVI  381 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~  381 (458)
                        .  .                    .............  .+.++++ +| .+++++....+..|..+| .+|+++..+
T Consensus       157 --~--~--------------------~~~~~~~~~~~~~--d~S~l~~-~p~t~~lliLS~es~~l~~~d-~~G~~~~~~  208 (248)
T PF06977_consen  157 --V--S--------------------DDQDLDDDKLFVR--DLSGLSY-DPRTGHLLILSDESRLLLELD-RQGRVVSSL  208 (248)
T ss_dssp             --E--E--------------------E-HHHH-HT--SS-----EEEE-ETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred             --e--c--------------------cccccccccceec--cccceEE-cCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence              0  0                    0000000000111  2567777 55 456777777888999999 578877665


Q ss_pred             ecCC---------ceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          382 EADR---------HVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       382 ~~~~---------~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      .-..         ...-.|+|.++|++.++ ++-+..+++
T Consensus       209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             E-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             EeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            4222         24678999999976654 455555443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.30  E-value=0.00041  Score=55.84  Aligned_cols=204  Identities=17%  Similarity=0.203  Sum_probs=117.4

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCC-----CeEEEEECCCcc-eeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDD-----RRVILWDWKTER-VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-  127 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-  127 (458)
                      +.+.||.      .|||||.+|...-.|     |.|-|||...+- .+.++ ..|.-.-..+.+.+  ||+.++.+... 
T Consensus       113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~--DGrtlvvanGGI  183 (366)
T COG3490         113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMA--DGRTLVVANGGI  183 (366)
T ss_pred             ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEec--CCcEEEEeCCce
Confidence            4455664      499999999875443     789999987543 23344 66777788899999  99999887531 


Q ss_pred             -----------------CcEEEeecccccceeeeecc--ccccceEEEEEcCCCCeEEEEecCCCe-----EEEEeCCCC
Q 012712          128 -----------------GQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGL-----VQHFDLRTG  183 (458)
Q Consensus       128 -----------------g~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~  183 (458)
                                       -.+.+.|..+++.+.+..+.  .+...+..++..++| .+++.+-..|.     -.+=-...+
T Consensus       184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g  262 (366)
T COG3490         184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKG  262 (366)
T ss_pred             ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCC
Confidence                             12334444455544444444  455678888888888 44444433221     111112233


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG  263 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      +..+.+...+....   .....+-+++.+.+.+...++.-..+...+||..++.......+                 ..
T Consensus       263 ~~l~~~~~pee~~~---~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-----------------~d  322 (366)
T COG3490         263 EPLEFLDLPEEQTA---AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-----------------PD  322 (366)
T ss_pred             CcCcccCCCHHHHH---HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-----------------cc
Confidence            33333332211100   02235678888876555555555666788999999875433111                 11


Q ss_pred             eeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712          264 ITGLAFSDQSELLVSYNDEFIYLFTQ  289 (458)
Q Consensus       264 i~~~~~~~~~~~l~~~~~~~i~i~~~  289 (458)
                      ...++-.. +-+.++...+.+.++.-
T Consensus       323 aaGva~~~-~gf~vssg~G~~~~~s~  347 (366)
T COG3490         323 AAGVAAAK-GGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             cccceecc-CceEEecCCceEEeccc
Confidence            22233222 34667777788887743

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.0029  Score=56.41  Aligned_cols=284  Identities=12%  Similarity=0.115  Sum_probs=166.9

Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP  163 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  163 (458)
                      +.+++..+......+ ..+ .....+...|  ++..+.... ....+...+.. ...... ....-......++.++.+.
T Consensus        13 ~~v~~~~~~~~~~~~-~~~-~~~~~v~~~~--~g~~~~v~~~~~~~~~~~~~~-~n~~~~-~~~~g~~~p~~i~v~~~~~   86 (381)
T COG3391          13 VSVINTGTNKVTAAI-SLG-RGPGGVAVNP--DGTQVYVANSGSNDVSVIDAT-SNTVTQ-SLSVGGVYPAGVAVNPAGN   86 (381)
T ss_pred             eEEEeecccEEEEEe-ecC-CCCceeEEcC--ccCEEEEEeecCceeeecccc-cceeee-eccCCCccccceeeCCCCC
Confidence            666666555544444 112 2556677777  764443333 22245555443 111111 1111113445788899887


Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCCCccCCC
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~  241 (458)
                      +.++....+..|.+.|..+.+........           .....++++|+++...++-.  .++.+.+.|..+.+....
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG-----------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPVG-----------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeeec-----------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            77777777899999997777666555432           14578999998544444444  368899999888765332


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA  319 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (458)
                                    ...+ ..+ ..++++|+|..+....  ++.+.+.|.........                      
T Consensus       156 --------------~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~----------------------  197 (381)
T COG3391         156 --------------IPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRG----------------------  197 (381)
T ss_pred             --------------EecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecc----------------------
Confidence                          1111 123 8899999999666655  55799999665322110                      


Q ss_pred             cCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---CeEEEEEecCCeEEEEeecCCc-eeeEEEecC
Q 012712          320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRH-VVNCIEPHP  395 (458)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~  395 (458)
                                 ...........   -..+.+ +|+|++++.....   +.+...|..++........-.. ....+..+|
T Consensus       198 -----------~~~~~~~~~~~---P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p  262 (381)
T COG3391         198 -----------SVGSLVGVGTG---PAGIAV-DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP  262 (381)
T ss_pred             -----------ccccccccCCC---CceEEE-CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence                       00001111111   234555 9999977665443   5899999988877765221111 466789999


Q ss_pred             CCCeEEEeec-CCcEEEecCCcccccccccccc----cEEEEEEecCC
Q 012712          396 HSTVLASSGI-ESDIKILTPNAADRATLPTNIE----QVCFSIYSADY  438 (458)
Q Consensus       396 ~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~----~v~~~~~s~d~  438 (458)
                      +|+.+.+... .+.+.+-|..+...........    .+..+++.+..
T Consensus       263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         263 AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            9998887743 4788888887765543322111    25555555544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.25  E-value=0.003  Score=58.69  Aligned_cols=159  Identities=15%  Similarity=0.128  Sum_probs=86.5

Q ss_pred             EEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEEecCCCeEEEEECCCcceeeeeccC
Q 012712           25 WLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDRRVILWDWKTERVKLSFHSG  102 (458)
Q Consensus        25 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  102 (458)
                      |-.-.+.....+++++..-..+.+.++++.-.++....  ..+.-+|  .+..|+.++.++.|.-.|..+|+.+.++...
T Consensus        21 W~~~g~~~~~~r~s~l~qI~~~nv~~L~~~W~~~~g~~--~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~   98 (527)
T TIGR03075        21 WLTYGGGYAGQRYSPLDQINTENVKKLQPAWTFSLGKL--RGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPK   98 (527)
T ss_pred             ccccCCCCCCcccCChHhcChhhhccceEEEEEECCCC--CCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCC
Confidence            43333333344555544444455555555555543211  0111111  2456677777888999999999987776322


Q ss_pred             CCccee----------EEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC---CCCeEEEEe
Q 012712          103 HNDNVF----------QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP---GSPHVFYTC  169 (458)
Q Consensus       103 ~~~~i~----------~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~  169 (458)
                      -...+.          .+++    .+..++.++.|+.+.-.|..+++.+.......+... ..+.-+|   ++ .+++..
T Consensus        99 ~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~  172 (527)
T TIGR03075        99 LPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGI  172 (527)
T ss_pred             CCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECC-EEEEee
Confidence            111111          1222    234677778889999999999988765433222110 0111112   33 333332


Q ss_pred             c-----CCCeEEEEeCCCCCccceeee
Q 012712          170 G-----EDGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       170 ~-----~dg~i~iwd~~~~~~~~~~~~  191 (458)
                      +     .+|.|..+|.++++.+..+..
T Consensus       173 ~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       173 SGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             cccccCCCcEEEEEECCCCceeEeccC
Confidence            2     368999999999998766554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.21  E-value=0.00019  Score=49.25  Aligned_cols=102  Identities=16%  Similarity=0.186  Sum_probs=68.9

Q ss_pred             eEEEEEec---CC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           64 VNTVSFNT---DG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        64 v~~~~~s~---~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      |++|++..   || +.|+.|+.|..|++|+-+  +.+.++  .-.+.|++++-..   ...++.+..+|+|-+|+-..  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLG---GGRFAYALANGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcC---CCEEEEEecCCEEEEEeCcc--
Confidence            67777765   33 689999999999999843  555555  3456788888875   46799999999999997532  


Q ss_pred             ceeeeeccccccceEEEEE---cCCCCeEEEEecCCCeEEE
Q 012712          140 GVETKLLGKHQGRAHKLAI---EPGSPHVFYTCGEDGLVQH  177 (458)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~---~~~~~~~l~s~~~dg~i~i  177 (458)
                      .+..  .+.. ..+.++++   ..+|...|++|-.+|.|-+
T Consensus        73 RlWR--iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 RLWR--IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeee--eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            2222  2212 22444443   3445557899988887743

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.18  E-value=9.7e-06  Score=71.64  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      .....|.|++++|+.+.|+.|..||.|.+||...+.....   ...-..+.++|+|  +|..+++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp--~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHP--DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcC--CCcEEEEEcCCceEEEEEeecC
Confidence            4678899999999999999999999999999876643322   3445678999999  9999999999999999998543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.09  E-value=0.0036  Score=51.04  Aligned_cols=177  Identities=11%  Similarity=0.109  Sum_probs=116.7

Q ss_pred             eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712           57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL  136 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~  136 (458)
                      +.|-...|.++.|+|+.+.|.+......-.||=..+|+.+.++.-..-...-.++|..  ++.+.++--.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--CCEEEEEehhcceEEEEEEc
Confidence            4555666999999999998888888777778877788888777433344556778886  77777777778888888876


Q ss_pred             cccceee-----eecc--cc-ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          137 ERGGVET-----KLLG--KH-QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       137 ~~~~~~~-----~~~~--~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      .+.....     ..+.  .+ +.....++|.|.. +.|+.+-+...+.+|........-...............-..+.+
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            6533211     1111  12 5567889999998 566777777778887766433111111110000000012335788


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      +.|++..+.+++-+.+++.+.-.|....
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecCCC
Confidence            9999877788888888888888887654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.08  E-value=0.0024  Score=55.75  Aligned_cols=221  Identities=10%  Similarity=0.037  Sum_probs=124.2

Q ss_pred             CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCcEEEEecC----------CCeEEEEecCCC-cc
Q 012712          173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANLFAVAGS----------DEYTRLYDIRKY-KW  238 (458)
Q Consensus       173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~----------dg~i~i~d~~~~-~~  238 (458)
                      ..|++.|..+.+.+..+...+.+      ....+..+.+..+   ...++++|+.          .|.|.++++... ..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~   75 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNE------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN   75 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTE------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred             cEEEEEeCCCCeEEEEEECCCCc------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence            35788888887776666544221      2223344445432   1467777753          288999999884 10


Q ss_pred             CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712          239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS  318 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (458)
                      ....         . ........++|++++-- ++ .|+++.+..+++|++....                         
T Consensus        76 ~~~l---------~-~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~-------------------------  118 (321)
T PF03178_consen   76 NFKL---------K-LIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSK-------------------------  118 (321)
T ss_dssp             --EE---------E-EEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTS-------------------------
T ss_pred             ceEE---------E-EEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcc-------------------------
Confidence            0000         0 01112235678888766 44 4777788999999998742                         


Q ss_pred             ccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC-CeEEEEee--cCCceeeEEEecC
Q 012712          319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GELIRVIE--ADRHVVNCIEPHP  395 (458)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~  395 (458)
                                   .......+.....+.++..   .+++++.|.....+.++.... ...+..+.  .....++++.+-+
T Consensus       119 -------------~l~~~~~~~~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~  182 (321)
T PF03178_consen  119 -------------TLLKKAFYDSPFYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV  182 (321)
T ss_dssp             -------------SEEEEEEE-BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-
T ss_pred             -------------cchhhheecceEEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec
Confidence                         0111111112213666655   366999998888888886654 33333332  2345688999987


Q ss_pred             CCCeEEEeecCCcEEEecCCcc-------c-cc---ccccccccEEEE---EEecC--C------cEEEeeecCCceEE
Q 012712          396 HSTVLASSGIESDIKILTPNAA-------D-RA---TLPTNIEQVCFS---IYSAD--Y------WWSKSQNFSCSILL  452 (458)
Q Consensus       396 ~~~~l~s~~~d~~i~iw~~~~~-------~-~~---~~~~~~~~v~~~---~~s~d--~------~~l~s~~~d~~i~~  452 (458)
                      +++.++.++.+|.+.++.....       . .+   ........|+++   +..|.  +      ..++.++.+|.|.+
T Consensus       183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            7778999999999999987632       1 11   111222346666   44552  2      24778899999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2.3e-05  Score=69.68  Aligned_cols=90  Identities=14%  Similarity=0.246  Sum_probs=75.5

Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee-EEEecCCCCeEEEeecCCcEEEecCCccccccc
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVLASSGIESDIKILTPNAADRATL  422 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~  422 (458)
                      .+..+.| +|.-.++|.+..+|.|.+..++ .+.+.++..|...++ +++|.|||+.||.|-.||+|++.|++.+..+.-
T Consensus        22 ~i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   22 NIKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ceEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            3777888 9999999999999999999997 788888887777777 999999999999999999999999998866533


Q ss_pred             --ccccccEEEEEEe
Q 012712          423 --PTNIEQVCFSIYS  435 (458)
Q Consensus       423 --~~~~~~v~~~~~s  435 (458)
                        ......|..+-|+
T Consensus       100 ~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFSVETDISKGIWD  114 (665)
T ss_pred             cccccccchheeecc
Confidence              3344456666675

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.04  E-value=0.0061  Score=53.20  Aligned_cols=135  Identities=15%  Similarity=0.097  Sum_probs=78.7

Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCC-----CeEEEEEcC----------CCcEEEeecccc----cceee
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAA----------DGQVRHAQILER----GGVET  143 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~l~s~~~----------dg~i~vw~~~~~----~~~~~  143 (458)
                      ..|++.|..+.+.+..+.-...+.+.+++...+.+     ..+|+.|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36888888888776665444455666665443322     467776643          288999999884    22222


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      ..-....++|++++-. ++ +++++.  ++.|.+|++...+ ....-...         ....+.++...   ++++++|
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~~l~~~~~~~---------~~~~i~sl~~~---~~~I~vg  145 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSKTLLKKAFYD---------SPFYITSLSVF---KNYILVG  145 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTSSEEEEEEE----------BSSSEEEEEEE---TTEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcccchhhheec---------ceEEEEEEecc---ccEEEEE
Confidence            2223456788888776 34 444433  4789999998887 33222211         11235555544   3477777


Q ss_pred             cCCCeEEEEec
Q 012712          223 GSDEYTRLYDI  233 (458)
Q Consensus       223 ~~dg~i~i~d~  233 (458)
                      .....+.++..
T Consensus       146 D~~~sv~~~~~  156 (321)
T PF03178_consen  146 DAMKSVSLLRY  156 (321)
T ss_dssp             ESSSSEEEEEE
T ss_pred             EcccCEEEEEE
Confidence            76666666644

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.00  E-value=0.012  Score=53.64  Aligned_cols=117  Identities=14%  Similarity=0.116  Sum_probs=71.8

Q ss_pred             ceEEEEEecCCCEEEEe-----cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---------
Q 012712           63 CVNTVSFNTDGDILISG-----SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---------  128 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---------  128 (458)
                      .+...++||||++||.+     +....+++.|+++++.+......  .....+.|.+  +++.|+....+.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~--d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD--DGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT--TSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC--CCCEEEEEEeCcccccccCCC
Confidence            34467899999998854     22247999999999765543221  1223399999  877776554322         


Q ss_pred             --cEEEeecccccceeeeeccccccc--eEEEEEcCCCCeEEEEecCC---CeEEEEeCCCC
Q 012712          129 --QVRHAQILERGGVETKLLGKHQGR--AHKLAIEPGSPHVFYTCGED---GLVQHFDLRTG  183 (458)
Q Consensus       129 --~i~vw~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~  183 (458)
                        .|..|.+.+........+......  ...+..++++..+++.....   ..+.+.|+..+
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence              377788766544322224433332  56788899996656554433   45778888775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.00  E-value=0.0097  Score=52.64  Aligned_cols=92  Identities=22%  Similarity=0.301  Sum_probs=60.8

Q ss_pred             EEEEecCCCEEEEecCCCeEEE---EECCC-c----ceeeeec--cCCC--cceeEEEEccC---------CCCeEEEEE
Q 012712           66 TVSFNTDGDILISGSDDRRVIL---WDWKT-E----RVKLSFH--SGHN--DNVFQAKIMPF---------TDDRSIVTC  124 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d~~i~i---wd~~~-~----~~~~~~~--~~~~--~~i~~~~~~~~---------~~~~~l~s~  124 (458)
                      .++.+|++++||.+..+..+.+   |+... +    .......  ..+.  +.|+++.+.|.         .|...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            5678999999999988876665   64321 1    1111111  1122  68999888774         356789999


Q ss_pred             cCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712          125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus       125 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      ..+|.|++|.- ++..+..  -.-|..+|..+.+..
T Consensus        86 ~ssG~vrfyte-~G~LL~~--Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLS--QLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEec-cchHHHH--HhcCccceEEEEecc
Confidence            99999999986 4454443  233777887777643

>smart00320 WD40 WD40 repeats

Probab=97.99  E-value=2.6e-05  Score=43.11  Aligned_cols=37  Identities=43%  Similarity=0.760  Sum_probs=33.1

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      ....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3456778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.98  E-value=3e-05  Score=42.85  Aligned_cols=39  Identities=26%  Similarity=0.432  Sum_probs=34.7

Q ss_pred             CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.97  E-value=0.00096  Score=45.91  Aligned_cols=101  Identities=15%  Similarity=0.059  Sum_probs=66.7

Q ss_pred             eeEEEEecCCC---cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc
Q 012712          345 VKGVNFFGPKC---EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT  421 (458)
Q Consensus       345 i~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~  421 (458)
                      |.++++++-++   +.|++|++|..||+|+-  .+.+.++... +.|++++-... ..++.+-.+|+|-+|+-...... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR-   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR-   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee-
Confidence            45666544343   58999999999999984  4667777644 46777776665 56888999999999976433222 


Q ss_pred             cccccccEEEEE-E--ecCC-cEEEeeecCCceE
Q 012712          422 LPTNIEQVCFSI-Y--SADY-WWSKSQNFSCSIL  451 (458)
Q Consensus       422 ~~~~~~~v~~~~-~--s~d~-~~l~s~~~d~~i~  451 (458)
                      ..... .+.+++ +  .-|| .-|++|-.+|.|-
T Consensus        77 iKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            22222 244444 3  3344 5678888888774

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.0082  Score=51.13  Aligned_cols=226  Identities=10%  Similarity=0.055  Sum_probs=122.9

Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      -.|.++...++.+--..+.|.-|+..+++.. .+..           ...+.++..-.. +..|+++..  .+.+++..+
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-----------p~~~~~~~~~d~-~g~Lv~~~~--g~~~~~~~~   94 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-----------PGGFSSGALIDA-GGRLIACEH--GVRLLDPDT   94 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-----------CCCcccceeecC-CCeEEEEcc--ccEEEeccC
Confidence            3567777567777777888999998866432 2221           112333333333 234544433  256666644


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----------cEEEEEccCCCCCCCCCCCCccc
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----------FIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      +......          ............+.+...|+|.+.++....          .-.+|-+...             
T Consensus        95 ~~~~t~~----------~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-------------  151 (307)
T COG3386          95 GGKITLL----------AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-------------  151 (307)
T ss_pred             CceeEEe----------ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-------------
Confidence            4321000          000111112455677788888877654441          0122222210             


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEecC--C----eE-
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG--G----EL-  377 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~----~~-  377 (458)
                                              ....+.+..+-.  .-+.++| |||++.|+.+.. .+.|+.|++..  +    +. 
T Consensus       152 ------------------------g~~~~l~~~~~~--~~NGla~-SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~  204 (307)
T COG3386         152 ------------------------GGVVRLLDDDLT--IPNGLAF-SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG  204 (307)
T ss_pred             ------------------------CCEEEeecCcEE--ecCceEE-CCCCCEEEEEeCCCCeEEEEecCcccCccCCcce
Confidence                                    112233333222  2578898 999988877654 47888887752  2    11 


Q ss_pred             EEEeecCCceeeEEEecCCCCeEEEeecCC-cEEEecCCccccc-ccccccccEEEEEEec-CCcEE-EeeecC
Q 012712          378 IRVIEADRHVVNCIEPHPHSTVLASSGIES-DIKILTPNAADRA-TLPTNIEQVCFSIYSA-DYWWS-KSQNFS  447 (458)
Q Consensus       378 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~-d~~~l-~s~~~d  447 (458)
                      ...+..+.+..-.++...+|.+.+++-.+| .|.+|+.+ +++. .+.-....+++++|-- +.+.| +|+...
T Consensus       205 ~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         205 FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            111222345667788888888876555554 99999999 5444 3333336788888864 44443 444444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.0074  Score=51.39  Aligned_cols=225  Identities=16%  Similarity=0.137  Sum_probs=118.1

Q ss_pred             EEccCCCCeE-EEEEcCCCcEEEeecccccceeeeeccccccceEEE-EEcCCCCeEEEEecCCCeEEEEeCCCCCccce
Q 012712          111 KIMPFTDDRS-IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL-AIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL  188 (458)
Q Consensus       111 ~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  188 (458)
                      .|.+  +... +.+--..+.|.-|+..+++...   +. +...+.++ .....+  .|+++..  -+.+++.+++.....
T Consensus        31 ~w~~--~~~~L~w~DI~~~~i~r~~~~~g~~~~---~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~  100 (307)
T COG3386          31 VWDP--DRGALLWVDILGGRIHRLDPETGKKRV---FP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITL  100 (307)
T ss_pred             cCcC--CCCEEEEEeCCCCeEEEecCCcCceEE---EE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCCceeEE
Confidence            4555  5553 3444456778888876554322   22 22223333 334443  3444433  356677665554322


Q ss_pred             eeecccCCCCcceeecceEEEEECCCCCcEEEEecCC------------CeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712          189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL  256 (458)
Q Consensus       189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  256 (458)
                      +..... ..    .....+.+...|++ .+.+ +...            |.++.+|.. +.               ...+
T Consensus       101 ~~~~~~-~~----~~~r~ND~~v~pdG-~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~-g~---------------~~~l  157 (307)
T COG3386         101 LAEPED-GL----PLNRPNDGVVDPDG-RIWF-GDMGYFDLGKSEERPTGSLYRVDPD-GG---------------VVRL  157 (307)
T ss_pred             eccccC-CC----CcCCCCceeEcCCC-CEEE-eCCCccccCccccCCcceEEEEcCC-CC---------------EEEe
Confidence            221111 11    12356778888884 3333 3322            224444431 11               1222


Q ss_pred             ccccccceeEEEeCCCCcEEEEecC--CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC-c
Q 012712          257 IGDEQVGITGLAFSDQSELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA-P  333 (458)
Q Consensus       257 ~~~~~~~i~~~~~~~~~~~l~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  333 (458)
                      ...+-..-+.|+||||++.|.....  ..|..|++........                                .+. .
T Consensus       158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~--------------------------------~~~~~  205 (307)
T COG3386         158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG--------------------------------GRRGF  205 (307)
T ss_pred             ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC--------------------------------CcceE
Confidence            3333445678999999987776654  4677777653100000                                011 1


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEEEecCCC-eEEEEEecCCeEEEEeecCCceeeEEEec-CCCCeEEEee
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSG  404 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~  404 (458)
                      ..+.....  ..-.++. +.+|.+-+++-.+| .|.+|+.. |+++..+.-....+++++|- |+.+.|...+
T Consensus       206 ~~~~~~~G--~PDG~~v-DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         206 VDFDEEPG--LPDGMAV-DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EEccCCCC--CCCceEE-eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            11111111  1334555 78888876655554 99999987 99999988776778888885 5556554443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.95  E-value=0.02  Score=54.76  Aligned_cols=354  Identities=13%  Similarity=0.092  Sum_probs=173.0

Q ss_pred             cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCC----eEEEEEcCCCcEEEeecccccceeeee-
Q 012712           71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD----RSIVTCAADGQVRHAQILERGGVETKL-  145 (458)
Q Consensus        71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~l~s~~~dg~i~vw~~~~~~~~~~~~-  145 (458)
                      .+...++.++.++.+...++..+.............|.|+.++|..++    +.++.|..+..+.+.-........... 
T Consensus       497 ~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~  576 (1096)
T KOG1897|consen  497 ANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQ  576 (1096)
T ss_pred             ecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeec
Confidence            334455556665666666666555333332344678999999985333    357777776655544332222222211 


Q ss_pred             cc--ccccceEEEEEcCCCCeEEEEecCCCeEEEEeC--CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          146 LG--KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL--RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       146 ~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      +.  .-...|.-..+-.+. .+|+++..||.+..+.+  .++.....-+        .+....++.--.|+..+...+++
T Consensus       577 l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~d~~tg~lsd~Kk--------~~lGt~P~~Lr~f~sk~~t~vfa  647 (1096)
T KOG1897|consen  577 LSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVLDINTGQLSDRKK--------VTLGTQPISLRTFSSKSRTAVFA  647 (1096)
T ss_pred             cCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEEEcccceEccccc--------cccCCCCcEEEEEeeCCceEEEE
Confidence            11  112334444555555 68899999999876654  4443211110        00022233333454443444444


Q ss_pred             ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEecCCcEEEEEccCCCCCCCCC
Q 012712          222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~~~~  299 (458)
                      ++. +-..+|..+. ++...           +.....  -..+  +.|+.+  ...++.+..+.+.+..++.-.......
T Consensus       648 ~sd-rP~viY~~n~-kLv~s-----------pls~ke--v~~~--c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irt  710 (1096)
T KOG1897|consen  648 LSD-RPTVIYSSNG-KLVYS-----------PLSLKE--VNHM--CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRT  710 (1096)
T ss_pred             eCC-CCEEEEecCC-cEEEe-----------ccchHH--hhhh--cccccccCCceEEEecCCceEEEEecchhhcceee
Confidence            433 3333333322 11000           000000  0011  112222  346777777777766655432111100


Q ss_pred             CCCccccccccccCCCCccccC-------CCC--CCcc--------cccCceeecCc-----cceeeeeEEEEecCC-Cc
Q 012712          300 SSPVSTRSEASEMGSDHTSAAS-------PST--ANTD--------VRIAPQVYKGH-----RNCVTVKGVNFFGPK-CE  356 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~--------~~~~~~~~~~~-----~~~~~i~~~~~~s~~-~~  356 (458)
                       -+....+....+.+......+       ...  ....        .......+..|     +....+.++.| ..| +.
T Consensus       711 -vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~-~~d~~t  788 (1096)
T KOG1897|consen  711 -VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKF-TDDPNT  788 (1096)
T ss_pred             -ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeee-cCCCce
Confidence             011111111111110000000       000  0000        01111222222     22223555556 555 67


Q ss_pred             EEEEec----------CCCeEEEEEecCCeEEEEeecC--CceeeEEEecCCCCeEEEeecCCcEEEecCCcc-cccccc
Q 012712          357 YVVSGS----------DCGRIFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPNAA-DRATLP  423 (458)
Q Consensus       357 ~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~  423 (458)
                      +++.|+          ..|+|.+|....++.++....+  .+.+.++.. -+|++||.  -...|++|+...+ ++..--
T Consensus       789 ~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~  865 (1096)
T KOG1897|consen  789 YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIEC  865 (1096)
T ss_pred             EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhh
Confidence            787775          3489999998875555444332  344555542 25777764  4578999999888 444556


Q ss_pred             cccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          424 TNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       424 ~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .+..++..+...-.|..++.|.--++|.+-.|
T Consensus       866 ~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y  897 (1096)
T KOG1897|consen  866 NISNPIIALDLQVKGDEIAVGDLMRSITLLQY  897 (1096)
T ss_pred             cccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence            67778999999999999999998888877655

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.94  E-value=0.013  Score=52.07  Aligned_cols=150  Identities=17%  Similarity=0.223  Sum_probs=88.3

Q ss_pred             CCEEEEecCCCeEEEEECCCccee---eeeccCCCcceeEEEEccC---CCCeEEEEEcCCCcEEEeecccccc------
Q 012712           73 GDILISGSDDRRVILWDWKTERVK---LSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGG------  140 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~---~~~~~l~s~~~dg~i~vw~~~~~~~------  140 (458)
                      ...+++||..|.++||+...++..   ..+...-..+|..++.-.+   .+...||.- .-..+.+|.+.....      
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCc
Confidence            468999999999999998654311   1111345678888886543   123345553 446788888733211      


Q ss_pred             -eeeeecccccc--ceEEEEEcC----CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          141 -VETKLLGKHQG--RAHKLAIEP----GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       141 -~~~~~~~~~~~--~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                       ........|.-  ....+++-|    .++.++..-+.||.+.+++-+.-.....+..           ..-...+++.|
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-----------~llPgPl~Y~~  184 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-----------FLLPGPLCYCP  184 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-----------CCCCcCeEEee
Confidence             11111223332  222333322    2246788889999999998654432222211           11134567777


Q ss_pred             CCCcEEEEecCCCeEEEEecCC
Q 012712          214 RNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       214 ~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      . ...|++++.+..+.-|....
T Consensus       185 ~-tDsfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  185 R-TDSFVTASSSWTLECYKYQD  205 (418)
T ss_pred             c-CCEEEEecCceeEEEecHHH
Confidence            6 57888999888898887643

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=0.014  Score=52.11  Aligned_cols=267  Identities=14%  Similarity=0.131  Sum_probs=156.1

Q ss_pred             ceEEEEEecCCCEEEEec-CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeE-EEEEcCCCcEEEeecccccc
Q 012712           63 CVNTVSFNTDGDILISGS-DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~~  140 (458)
                      ....+...+++..+.... ....+..-+...... ......-...-..++.++  .+.. .++...+..|.+.|......
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~-~~~~~~g~~~p~~i~v~~--~~~~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTV-TQSLSVGGVYPAGVAVNP--AGNKVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeeccccccee-eeeccCCCccccceeeCC--CCCeEEEecCCCCeEEEEcCcccce
Confidence            455677788885444332 222455555442222 111111113345677777  7764 45555568999999776665


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      .......   .....++++|+++.+.++-.  .++.+.+.|..+.+.......          .. ....++++|++...
T Consensus       109 ~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v----------G~-~P~~~a~~p~g~~v  174 (381)
T COG3391         109 LGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV----------GN-TPTGVAVDPDGNKV  174 (381)
T ss_pred             eeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec----------CC-CcceEEECCCCCeE
Confidence            5443222   25678999999966666655  378999999888887766432          11 12789999985434


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC----CcEEEEEccCCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGLG  294 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~i~i~~~~~~~~  294 (458)
                      .++-..++.|.+.|........ ..          .............+.++|+|..+....+    +.+...|..++..
T Consensus       175 yv~~~~~~~v~vi~~~~~~v~~-~~----------~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         175 YVTNSDDNTVSVIDTSGNSVVR-GS----------VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             EEEecCCCeEEEEeCCCcceec-cc----------cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            5555578999999977665331 00          0001111234567889999986655442    2577777665321


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEec
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK  373 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~  373 (458)
                      ...                                     .......  ....+.. +|+|+++.+... .+.+.+-|..
T Consensus       244 ~~~-------------------------------------~~~~~~~--~~~~v~~-~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         244 TAT-------------------------------------DLPVGSG--APRGVAV-DPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             EEe-------------------------------------ccccccC--CCCceeE-CCCCCEEEEEecCCCeEEEEeCC
Confidence            110                                     0011110  1234555 999999888744 4899999998


Q ss_pred             CCeEEEEeecCCc---eeeEEEecCCC
Q 012712          374 GGELIRVIEADRH---VVNCIEPHPHS  397 (458)
Q Consensus       374 ~~~~~~~~~~~~~---~v~~~~~s~~~  397 (458)
                      +............   .+..+++.+..
T Consensus       284 ~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         284 TDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             CCceeeeecccccccccceeccceeec
Confidence            8877776544332   35556655543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.92  E-value=0.023  Score=54.35  Aligned_cols=322  Identities=11%  Similarity=0.061  Sum_probs=172.2

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      ..|.-..|-.|..+|.++..||.+.-|.++.......-.   .--..++.--.|+.  .+..-+.+..|.-..+|.-+ +
T Consensus       584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s--k~~t~vfa~sdrP~viY~~n-~  660 (1096)
T KOG1897|consen  584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSS--KSRTAVFALSDRPTVIYSSN-G  660 (1096)
T ss_pred             hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEee--CCceEEEEeCCCCEEEEecC-C
Confidence            456666676678899999999998877665443222110   11234555555665  44433444445555555432 2


Q ss_pred             cceeeeeccccccceE-EEEEcCC-CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          139 GGVETKLLGKHQGRAH-KLAIEPG-SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~-~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      +.... .+.-  ..+. .+.|+.+ .+..++++. .+.+++..+..-+....-..+         -...+..+++.+. .
T Consensus       661 kLv~s-pls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp---------l~~~prrI~~q~~-s  726 (1096)
T KOG1897|consen  661 KLVYS-PLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP---------LGESPRRICYQES-S  726 (1096)
T ss_pred             cEEEe-ccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec---------CCCChhheEeccc-c
Confidence            22211 0110  0111 1223222 223344444 345666655433222211111         1123455666653 2


Q ss_pred             cEEEEecC-----------C---CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecC
Q 012712          217 NLFAVAGS-----------D---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYND  281 (458)
Q Consensus       217 ~~l~~~~~-----------d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~  281 (458)
                      ..+.+.+.           .   ..++++|-++.+.....++.+.           +....+.++.|..| +.+++.|+.
T Consensus       727 l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~-----------E~~~Si~s~~~~~d~~t~~vVGT~  795 (1096)
T KOG1897|consen  727 LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERN-----------ETALSIISCKFTDDPNTYYVVGTG  795 (1096)
T ss_pred             eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccccc-----------ceeeeeeeeeecCCCceEEEEEEE
Confidence            33333221           1   2367777777665443332211           11234556667777 667776641


Q ss_pred             -----------CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712          282 -----------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF  350 (458)
Q Consensus       282 -----------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  350 (458)
                                 |.|.+|.....                                      ..++....+.-...+.++..
T Consensus       796 ~v~Pde~ep~~GRIivfe~~e~--------------------------------------~~L~~v~e~~v~Gav~aL~~  837 (1096)
T KOG1897|consen  796 LVYPDENEPVNGRIIVFEFEEL--------------------------------------NSLELVAETVVKGAVYALVE  837 (1096)
T ss_pred             eeccCCCCcccceEEEEEEecC--------------------------------------Cceeeeeeeeeccceeehhh
Confidence                       24666665541                                      12222222222223555543


Q ss_pred             ecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc--ccccccc--ccc
Q 012712          351 FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA--ADRATLP--TNI  426 (458)
Q Consensus       351 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~--~~~~~~~--~~~  426 (458)
                        -+|++||.-  +..|++|+..+.+.++.-..|..++..+...-.|..++.|..-+.+.+.....  +....+.  -+.
T Consensus       838 --fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p  913 (1096)
T KOG1897|consen  838 --FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP  913 (1096)
T ss_pred             --hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc
Confidence              378888755  46899999988877777777888899999999999999998888777655443  3344333  345


Q ss_pred             ccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          427 EQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       427 ~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ..++++.+-.+..++.+ ..+|.+++-+
T Consensus       914 ~Wmtaveil~~d~ylga-e~~gNlf~v~  940 (1096)
T KOG1897|consen  914 NWMTAVEILDDDTYLGA-ENSGNLFTVR  940 (1096)
T ss_pred             cceeeEEEecCceEEee-cccccEEEEE
Confidence            55777777766666643 5566665543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.79  E-value=0.025  Score=50.87  Aligned_cols=179  Identities=11%  Similarity=0.033  Sum_probs=89.1

Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee-----eccccccceEEEEE
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-----LLGKHQGRAHKLAI  158 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-----~~~~~~~~v~~~~~  158 (458)
                      .|.||+.. |+.+.++.-.+ +.|.++.|..  + +.|+....||.++++|+.... ....     ...-....+....+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~--~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTD--D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECCC-CCEeEEEEECC-CCEEEEEECC--C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccccc
Confidence            59999965 66666653333 8999999985  4 556666789999999986332 1000     00111122223334


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                      ..+| -  +.-..++.+.+.+--... ....+...+......+..........++.+ ....+....++.+.+.+....+
T Consensus       136 ~~~G-i--vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~-~~~~i~~~~g~~i~~i~~~~~~  211 (410)
T PF04841_consen  136 YKNG-I--VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD-RVVEILLANGETIYIIDENSFK  211 (410)
T ss_pred             CCCC-E--EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC-cceEEEEecCCEEEEEEccccc
Confidence            4455 2  333344555444322211 111111000000000000000001234444 3344444555666655443211


Q ss_pred             cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccC
Q 012712          238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDM  291 (458)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~  291 (458)
                      .                  . ...+++..++.||+|+++|...+ +.+.+...+-
T Consensus       212 ~------------------i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  212 Q------------------I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             c------------------c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence            0                  1 12468999999999999998875 5777776443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.79  E-value=0.018  Score=49.06  Aligned_cols=250  Identities=11%  Similarity=0.065  Sum_probs=126.9

Q ss_pred             CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeee---cc
Q 012712          117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC---RP  193 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~  193 (458)
                      .++.|+.|..+| +.+++......... ..  +...|..+...|+-+ .+++-+ |+.+.++++..-........   ..
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccc
Confidence            678899998888 88998832222211 11  233499999999874 444433 49999999886655442110   00


Q ss_pred             cC-CCCcceeecceEEEE--ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC
Q 012712          194 ID-DRRNYMTVVNLNAIA--IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS  270 (458)
Q Consensus       194 ~~-~~~~~~~~~~v~~~~--~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  270 (458)
                      .. ..........+...+  -.+.+...++ ......|.+|..........    .     ....+.  -...+..++|.
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~----~-----~~ke~~--lp~~~~~i~~~  147 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFS----K-----LLKEIS--LPDPPSSIAFL  147 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccc----c-----eeEEEE--cCCCcEEEEEe
Confidence            00 000000112333333  1122233444 44455899988876421100    0     001111  13567888888


Q ss_pred             CCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712          271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF  350 (458)
Q Consensus       271 ~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  350 (458)
                        +..++.+..+...+.|+.++....-......                            .............+..+. 
T Consensus       148 --~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~----------------------------~~~~~~~~~~~~~~~~~~-  196 (275)
T PF00780_consen  148 --GNKICVGTSKGFYLIDLNTGSPSELLDPSDS----------------------------SSSFKSRNSSSKPLGIFQ-  196 (275)
T ss_pred             --CCEEEEEeCCceEEEecCCCCceEEeCccCC----------------------------cchhhhcccCCCceEEEE-
Confidence              5578888788899999986432211100000                            000000000110122222 


Q ss_pred             ecCCCcEEEEecCCCeEEEEEecCCeEEE--EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc
Q 012712          351 FGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP  423 (458)
Q Consensus       351 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~  423 (458)
                       -+++.+|++-  |..-.+.|. .|++.+  .+.-.. .+.++++  ...+|+..+. +.|.||++.++++.+..
T Consensus       197 -~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~-~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i  263 (275)
T PF00780_consen  197 -LSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS-APQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTI  263 (275)
T ss_pred             -eCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC-chhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEE
Confidence             2445677653  223333343 555443  344332 4556666  3457776665 56999999999776443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.76  E-value=0.029  Score=50.54  Aligned_cols=68  Identities=13%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      .+..++. ||+|+++|.-..+|.+.+.+..-.+.+.++... ......|.|.-+...++.-  ...+.+...
T Consensus       218 ~i~~iav-Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~  286 (410)
T PF04841_consen  218 PIIKIAV-SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP  286 (410)
T ss_pred             CeEEEEE-CCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence            3888998 999999999999999999887666666666544 3467788887655433332  345555553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.75  E-value=0.016  Score=47.33  Aligned_cols=216  Identities=13%  Similarity=0.048  Sum_probs=118.6

Q ss_pred             EEeeeeeEeecC-CCceEEEEEecCCCEEEEecCCC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           49 LRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        49 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      ..+++++++... ......+.|..+|.++-+.+.-|  .|+.+|+.+++......-...----.++..   ++....-.=
T Consensus        31 ~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTW  107 (264)
T PF05096_consen   31 YSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTW  107 (264)
T ss_dssp             EEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEES
T ss_pred             eeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEe
Confidence            455677776622 34556788878888888887765  799999999987655422222222234443   344444455


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      .++...+||..+-+.+....+.   ..=..++  .++..+ +.......++++|.++.+....+.......     ....
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~L-i~SDGS~~L~~~dP~~f~~~~~i~V~~~g~-----pv~~  176 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKRL-IMSDGSSRLYFLDPETFKEVRTIQVTDNGR-----PVSN  176 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE-S---SS--EEE--ECSSCE-EEE-SSSEEEEE-TTT-SEEEEEE-EETTE-----E---
T ss_pred             cCCeEEEEccccceEEEEEecC---CcceEEE--cCCCEE-EEECCccceEEECCcccceEEEEEEEECCE-----ECCC
Confidence            6788999999887776654443   3455666  345344 444445689999998887766665432111     2234


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEec
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN  280 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~  280 (458)
                      ++-+.+-.  +.+.|=.-....|...|..+++......+..................-.+.||+.|... ++++|-
T Consensus       177 LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  177 LNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             cEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            66677762  56666666667788888888776554332211000000000011134578999988765 455543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.74  E-value=0.0069  Score=57.85  Aligned_cols=148  Identities=9%  Similarity=0.078  Sum_probs=91.3

Q ss_pred             CCEEEEe-cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccC---CCCeEEEEEcCCCcEEEeecccccc--eeeee-
Q 012712           73 GDILISG-SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGG--VETKL-  145 (458)
Q Consensus        73 ~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~-  145 (458)
                      .++|+.- .....|.-.|++.|+.+..+......+|..++-...   -.....+.|-.+..+..||.+-...  +.... 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444433 345678888999999988884333333555433210   0123455666678899999986542  11100 


Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      .........|++-+.+|  .+|.|+.+|.||+||- .+...++.- +      +  -..+|..|..+.| |+++++.+ +
T Consensus       573 ~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~l-p------~--lG~pI~~iDvt~D-GkwilaTc-~  638 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTAL-P------G--LGDPIIGIDVTAD-GKWILATC-K  638 (794)
T ss_pred             ccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcC-C------C--CCCCeeEEEecCC-CcEEEEee-c
Confidence            11234567888888888  4899999999999993 332222111 1      1  3458999999998 56665444 4


Q ss_pred             CeEEEEecC
Q 012712          226 EYTRLYDIR  234 (458)
Q Consensus       226 g~i~i~d~~  234 (458)
                      ..+.+++..
T Consensus       639 tyLlLi~t~  647 (794)
T PF08553_consen  639 TYLLLIDTL  647 (794)
T ss_pred             ceEEEEEEe
Confidence            578888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.0002  Score=64.01  Aligned_cols=94  Identities=13%  Similarity=0.155  Sum_probs=77.6

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCccee-EEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF-QAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      -.|.-+.|+|.-.++|++..+|.|.+..+. .+.+..+ .-|..+++ +++|.|  ||+.||.|-.||+|++.|++++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRP--DGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecC--CCCEEEEEecCCeEEEEEccCCCc
Confidence            457789999999999999999999999988 6666777 44666777 999999  999999999999999999999887


Q ss_pred             eeeeeccccccceEEEEEcC
Q 012712          141 VETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~  160 (458)
                      +... .......|.++-|.+
T Consensus        97 l~~~-~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSF-LFSVETDISKGIWDR  115 (665)
T ss_pred             eecc-ccccccchheeeccc
Confidence            6653 223456777888865

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.73  E-value=0.01  Score=48.45  Aligned_cols=187  Identities=12%  Similarity=0.081  Sum_probs=108.3

Q ss_pred             CCCCeEEEeeCCC--cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712            8 NNNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV   85 (458)
Q Consensus         8 ~~~~~l~~~~~d~--~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   85 (458)
                      .++.++-+.+.-|  .|+.+|+++|+...+                   ..+.. .--=-.++... ++...-.=.++..
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-------------------~~l~~-~~FgEGit~~~-d~l~qLTWk~~~~  112 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-------------------VPLPP-RYFGEGITILG-DKLYQLTWKEGTG  112 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEE-------------------EE-TT-T--EEEEEEET-TEEEEEESSSSEE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-------------------EECCc-cccceeEEEEC-CEEEEEEecCCeE
Confidence            4455556655444  799999999887643                   11211 11111233332 2333334567899


Q ss_pred             EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc---cceEEEEEcCCC
Q 012712           86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEPGS  162 (458)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~  162 (458)
                      .+||..+.+.+.++.  ..+.=+.++.    |++.|+.+.....+.++|..+.+...........   ..++-+.|. +|
T Consensus       113 f~yd~~tl~~~~~~~--y~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G  185 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFP--YPGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG  185 (264)
T ss_dssp             EEEETTTTEEEEEEE---SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred             EEEccccceEEEEEe--cCCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence            999999988888773  3345567773    7778888777789999998876665543333332   345566776 45


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCC-----CcceeecceEEEEECCCCCcEEEEec
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                       .+.+=.-....|...|..+|+....+........     ..+....-.+.++++|..+.++++|=
T Consensus       186 -~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  186 -KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             -EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             -EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence             5666566667888889999988776654332110     01112335789999998666677664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.66  E-value=0.0021  Score=61.15  Aligned_cols=148  Identities=16%  Similarity=0.187  Sum_probs=97.1

Q ss_pred             CCeEEEEE-cCCCcEEEeecccccceeeeeccccccc-eEEEEEcCCC------CeEEEEecCCCeEEEEeCCCCCccce
Q 012712          117 DDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGR-AHKLAIEPGS------PHVFYTCGEDGLVQHFDLRTGAATEL  188 (458)
Q Consensus       117 ~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~  188 (458)
                      +.++|+.- .....|.-.|++.++.+..  +..+... |..+  .|+.      +...+.|-.+..+..||.|-.... .
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~e--W~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~  566 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEE--WKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-L  566 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEE--eecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCc-e
Confidence            44444443 3456788889988887766  4434432 4444  3321      123466777788999999864311 1


Q ss_pred             eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEE
Q 012712          189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA  268 (458)
Q Consensus       189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  268 (458)
                      ... .   ...........|++-+.+  .+||+|+.+|.||+||-- ++              ..+..+.+-..+|..|.
T Consensus       567 v~~-~---~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~-g~--------------~AKT~lp~lG~pI~~iD  625 (794)
T PF08553_consen  567 VDS-Q---SKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRL-GK--------------RAKTALPGLGDPIIGID  625 (794)
T ss_pred             eec-c---ccccccCCCceEEEecCC--ceEEEEeCCCcEEeeccc-ch--------------hhhhcCCCCCCCeeEEE
Confidence            110 0   011124446788888876  389999999999999942 22              12334445568999999


Q ss_pred             eCCCCcEEEEecCCcEEEEEcc
Q 012712          269 FSDQSELLVSYNDEFIYLFTQD  290 (458)
Q Consensus       269 ~~~~~~~l~~~~~~~i~i~~~~  290 (458)
                      .+.||+++++.+...+.+++..
T Consensus       626 vt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  626 VTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             ecCCCcEEEEeecceEEEEEEe
Confidence            9999999999999999999864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.58  E-value=0.037  Score=52.08  Aligned_cols=154  Identities=12%  Similarity=0.126  Sum_probs=84.3

Q ss_pred             CCceEEEEEecCCCEEEEec------CCC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-----
Q 012712           61 RGCVNTVSFNTDGDILISGS------DDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----  127 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----  127 (458)
                      ...+.+.+++|||+.+|...      .|.  .|.+++.. +.. ..+..+.  ......|+|  +|+.|++....     
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~PsWsp--DG~~lw~v~dg~~~~~  422 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPSWSL--DADAVWVVVDGNTVVR  422 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCceECC--CCCceEEEecCcceEE
Confidence            34678999999999887654      233  45555542 222 3332332  488899999  98888776532     


Q ss_pred             -------CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEE---EeCCCCCccceeeecccCCC
Q 012712          128 -------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH---FDLRTGAATELFTCRPIDDR  197 (458)
Q Consensus       128 -------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~  197 (458)
                             +.+.+.++..++...     .....|..+.|+|||.++++..  ++.|.+   -....+. ...-....... 
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~-  493 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGP-  493 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeec-
Confidence                   222222332222111     2345799999999996555444  467776   3333443 11100000000 


Q ss_pred             CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712          198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR  234 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  234 (458)
                       +  ....+..+.|.++ +. |+++..++.-.+|.+.
T Consensus       494 -~--l~~~~~~l~W~~~-~~-L~V~~~~~~~~v~~v~  525 (591)
T PRK13616        494 -G--LGDTAVSLDWRTG-DS-LVVGRSDPEHPVWYVN  525 (591)
T ss_pred             -c--cCCccccceEecC-CE-EEEEecCCCCceEEEe
Confidence             0  1123577899987 44 4455555544455543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.0032  Score=55.50  Aligned_cols=142  Identities=13%  Similarity=0.180  Sum_probs=87.6

Q ss_pred             EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc--------EEEEecCCcEEEEEc
Q 012712          218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE--------LLVSYNDEFIYLFTQ  289 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~l~~~~~~~i~i~~~  289 (458)
                      ++..+.....++-.|+..++.+....+.                ..|+-+.+.|+.+        .|+.-++..|.-||+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~----------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp  411 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFE----------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP  411 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeecc----------------CCcceeeccCCcchhcccccccEEeecCCceEEecc
Confidence            4455666667888888888765543331                1255566666542        455666778999998


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                      +-.... .                     ++         ...-+.+....+   ..|.+- ..+ .++++|+.+|.|++
T Consensus       412 Rv~~~~-k---------------------l~---------~~q~kqy~~k~n---Fsc~aT-T~s-G~IvvgS~~GdIRL  455 (644)
T KOG2395|consen  412 RVQGKN-K---------------------LA---------VVQSKQYSTKNN---FSCFAT-TES-GYIVVGSLKGDIRL  455 (644)
T ss_pred             cccCcc-e---------------------ee---------eeeccccccccc---cceeee-cCC-ceEEEeecCCcEEe
Confidence            742110 0                     00         001112222222   455554 444 48999999999999


Q ss_pred             EEecCCeEE-EEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          370 WKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       370 wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ||- .+... ..+.+-..+|..+..+.||++|+..+ +..+.+-+
T Consensus       456 Ydr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  456 YDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             ehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            997 44433 44677788999999999999887655 44555544

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.55  E-value=0.0026  Score=59.57  Aligned_cols=105  Identities=5%  Similarity=-0.079  Sum_probs=63.9

Q ss_pred             eeEEEEecCCCcEEEEecCC------------CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEE-
Q 012712          345 VKGVNFFGPKCEYVVSGSDC------------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI-  411 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i-  411 (458)
                      ...-.| +|||+.|++....            +.+++.++..++...   ...+.|..+.|||||..||... ++.|.+ 
T Consensus       399 ~t~PsW-spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va  473 (591)
T PRK13616        399 LTRPSW-SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLA  473 (591)
T ss_pred             CCCceE-CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence            345556 9998877766432            233333443333322   2345799999999999888765 577777 


Q ss_pred             --ecCCccccc-----ccccccc-cEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          412 --LTPNAADRA-----TLPTNIE-QVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       412 --w~~~~~~~~-----~~~~~~~-~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                        -....++..     .+..... .+.++.|..++.++ .+..++.-.+|..
T Consensus       474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence              444455411     1222233 36889999999865 4455555666664

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.036  Score=45.41  Aligned_cols=323  Identities=14%  Similarity=0.076  Sum_probs=159.1

Q ss_pred             eecCC-CceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           57 LDKHR-GCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        57 ~~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      +-+|- +.|..+....+-.++..|-.---.-+|+.....  ....+ -.-.+-+..+.++    +++...+..+.-+++.
T Consensus        37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~-i~~~~l~~Dv~vs----e~yvyvad~ssGL~Iv  111 (370)
T COG5276          37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSV-INARDLFADVRVS----EEYVYVADWSSGLRIV  111 (370)
T ss_pred             EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEE-EehhhhhheeEec----ccEEEEEcCCCceEEE
Confidence            45665 566666665433333332211122344443211  11111 1234567778885    4577777777889999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      |+.++.......+-.-.+...++..+  | +.++.+..|.-+.+.|+.+.+....-.....       ....-..++.+ 
T Consensus       112 DIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdpssP~lagrya~-------~~~d~~~v~IS-  180 (370)
T COG5276         112 DISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-------PGGDTHDVAIS-  180 (370)
T ss_pred             eccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCCCceeeeeecc-------CCCCceeEEEe-
Confidence            99988765432222122333444443  4 4566666555577889887765433221111       11122455565 


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc-ccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712          214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELLVSYNDEFIYLFTQDMG  292 (458)
Q Consensus       214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~  292 (458)
                        +++-..+..|+-+.+.|+.....              |.-+..-. ...+.++..+++..+++...+ .+.+-|....
T Consensus       181 --Gn~AYvA~~d~GL~ivDVSnp~s--------------Pvli~~~n~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~  243 (370)
T COG5276         181 --GNYAYVAWRDGGLTIVDVSNPHS--------------PVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-GVLIVDVSGP  243 (370)
T ss_pred             --cCeEEEEEeCCCeEEEEccCCCC--------------CeEEEEEecCCceEEEEecCCeeEEEEccc-ceEEEecCCC
Confidence              46777788899999999987541              11111111 125666777766655554433 3555555542


Q ss_pred             CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec--CccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      +.                                      +..+.  ...++..+..+   .-.+++...+..+.-+.+-
T Consensus       244 ss--------------------------------------p~~~gsyet~~p~~~s~v---~Vs~~~~Yvadga~gl~~i  282 (370)
T COG5276         244 SS--------------------------------------PTVFGSYETSNPVSISTV---PVSGEYAYVADGAKGLPII  282 (370)
T ss_pred             CC--------------------------------------ceEeeccccCCcccccce---ecccceeeeeccccCceeE
Confidence            21                                      11111  11111112222   2345566666556556666


Q ss_pred             EecCCe---EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeec
Q 012712          371 KKKGGE---LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNF  446 (458)
Q Consensus       371 d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~  446 (458)
                      |+++..   ....+......-..+..  -+.++..+..+ ...+-+....+.. ...+....+.+.+.+-+.+.+.+...
T Consensus       283 disnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~  359 (370)
T COG5276         283 DISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDY  359 (370)
T ss_pred             eccCCCCCchhccccCCCccccceEE--ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeec
Confidence            654321   11111111111222222  22333333333 3333333332222 22222333556666666778888899


Q ss_pred             CCceEEEEEe
Q 012712          447 SCSILLFEWL  456 (458)
Q Consensus       447 d~~i~~w~~~  456 (458)
                      ++.+.+||++
T Consensus       360 ~~gl~i~~~~  369 (370)
T COG5276         360 NGGLSIIEYL  369 (370)
T ss_pred             CCCEEEEEec
Confidence            9999999986

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.52  E-value=0.035  Score=45.24  Aligned_cols=247  Identities=12%  Similarity=0.087  Sum_probs=124.3

Q ss_pred             ceeEEEEccCCCCeEEEEEcCCCc-EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEe
Q 012712          106 NVFQAKIMPFTDDRSIVTCAADGQ-VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFD  179 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd  179 (458)
                      .-..++|+|. -...++.+-.-|+ ..++|....+.+....-.......-.=.|+|+| .+|++.-.|     |.|-+||
T Consensus        69 R~Hgi~~~p~-~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd  146 (366)
T COG3490          69 RGHGIAFHPA-LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYD  146 (366)
T ss_pred             ccCCeecCCC-CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEe
Confidence            3446777772 3344556655555 457888777665543222111122234689999 566655433     7899999


Q ss_pred             CCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC------------------CCeEEEEecCCCccCC
Q 012712          180 LRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS------------------DEYTRLYDIRKYKWDG  240 (458)
Q Consensus       180 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~  240 (458)
                      .+.+- .+..+..          +......+.+.+| +..++.+..                  .-.+.+.|..+++++.
T Consensus       147 ~r~~fqrvgE~~t----------~GiGpHev~lm~D-GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie  215 (366)
T COG3490         147 AREGFQRVGEFST----------HGIGPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             cccccceeccccc----------CCcCcceeEEecC-CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence            88442 1222221          2334567888898 566665432                  1123344444444433


Q ss_pred             CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC----cEEEEEccCC-CCCCCCCCCCccccccccccCC
Q 012712          241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE----FIYLFTQDMG-LGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~----~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      +..+.           ...+...|..++..+||+.++.+. .+    .--+.-...+ +....+.               
T Consensus       216 kh~Lp-----------~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~---------------  269 (366)
T COG3490         216 KHTLP-----------ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD---------------  269 (366)
T ss_pred             hccCc-----------hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccC---------------
Confidence            22111           012345688888888888776553 11    1111111111 0000000               


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIEP  393 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  393 (458)
                                      ..........+  .|-+++. ..+..+++..+ ..+...+||..+|..+..-.--  ....++ 
T Consensus       270 ----------------~pee~~~~~an--YigsiA~-n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva-  327 (366)
T COG3490         270 ----------------LPEEQTAAFAN--YIGSIAA-NRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA-  327 (366)
T ss_pred             ----------------CCHHHHHHHHh--hhhheee-cccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce-
Confidence                            00011111111  2556666 44444555444 4456779999999877543211  122223 


Q ss_pred             cCCCCeEEEeecCCcEEEecC
Q 012712          394 HPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       394 s~~~~~l~s~~~d~~i~iw~~  414 (458)
                       +...-++..+.+|.+.+++-
T Consensus       328 -~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         328 -AAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             -eccCceEEecCCceEEeccc
Confidence             23344556667889988853

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.039  Score=45.34  Aligned_cols=145  Identities=12%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      ..+|...-.-.+..+.+.+-...+.++.|+|+.+ .|++......-.++=..+|+.+..+......         ....+
T Consensus        65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~---------DpE~I  134 (316)
T COG3204          65 IARYLLEYRARIDAKPILGETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFS---------DPETI  134 (316)
T ss_pred             hhhccCCceEEEeccccccccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccC---------ChhHe
Confidence            4444443322333333555666799999999994 5566665566666656677777766544321         23456


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFT  288 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~  288 (458)
                      .+... +.++++--.++.+.++.+......-....    .... .......+.....++|+|....|...-+. -+.||.
T Consensus       135 eyig~-n~fvi~dER~~~l~~~~vd~~t~~~~~~~----~~i~-L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~  208 (316)
T COG3204         135 EYIGG-NQFVIVDERDRALYLFTVDADTTVISAKV----QKIP-LGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFE  208 (316)
T ss_pred             EEecC-CEEEEEehhcceEEEEEEcCCccEEeccc----eEEe-ccccCCCCcCceeeecCCCCceEEEEEccCCcEEEE
Confidence            66664 56666667788888887765532111000    0001 11122225678899999998877777654 355655


Q ss_pred             cc
Q 012712          289 QD  290 (458)
Q Consensus       289 ~~  290 (458)
                      ..
T Consensus       209 ~~  210 (316)
T COG3204         209 VT  210 (316)
T ss_pred             Ee
Confidence            54

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.49  E-value=0.046  Score=51.49  Aligned_cols=155  Identities=15%  Similarity=0.181  Sum_probs=88.1

Q ss_pred             ecCCCEEEEecCC------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-C-----cEEEeeccc
Q 012712           70 NTDGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-G-----QVRHAQILE  137 (458)
Q Consensus        70 s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-g-----~i~vw~~~~  137 (458)
                      +..+.+++.||.+      ..+..+|..+++............-.+++..   ++...++||.| |     .+..||...
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE---CCEEEEEccccCCCcccceEEEecCCC
Confidence            3346677778776      4688899887754332222233334555555   67888999988 3     466788777


Q ss_pred             ccceeeeeccccccceEEEEEcCCCCeEEEEecCCC-----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      ++......+...........+  +| .+.+.|+.||     ++..||.++.+-...-....        .........+ 
T Consensus       359 ~~W~~~a~M~~~R~~~~v~~l--~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--------~r~~~gv~~~-  426 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVAVL--DG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--------RRSGHGVAVL-  426 (571)
T ss_pred             CceeccCCccCccccceeEEE--CC-EEEEEeccccccccccEEEecCCCCcccccCCCCc--------ceeeeEEEEE-
Confidence            765443222222222221222  34 7888899886     47788877665432221100        0111222233 


Q ss_pred             CCCCcEEEEecCCC------eEEEEecCCCccCCC
Q 012712          213 PRNANLFAVAGSDE------YTRLYDIRKYKWDGS  241 (458)
Q Consensus       213 p~~~~~l~~~~~dg------~i~i~d~~~~~~~~~  241 (458)
                        ++.+.++|+.++      .+..||..+++....
T Consensus       427 --~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  427 --GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             --CCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence              367888888554      578899988876443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.48  E-value=0.063  Score=47.11  Aligned_cols=58  Identities=12%  Similarity=-0.067  Sum_probs=30.2

Q ss_pred             ceeeEEEecCCCCeEEEee-cCCcEEEecCCccccccccc--------------------ccccEEEEEEecCCcEEEe
Q 012712          386 HVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLPT--------------------NIEQVCFSIYSADYWWSKS  443 (458)
Q Consensus       386 ~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~--------------------~~~~v~~~~~s~d~~~l~s  443 (458)
                      .-|+.+..|.|.++|.... .+|.|+.||+......++.+                    -.+...-+..|.||+.|..
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv  390 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV  390 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence            3479999999999887655 48999999998753322211                    1122466788999977643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.45  E-value=0.086  Score=48.06  Aligned_cols=224  Identities=12%  Similarity=0.123  Sum_probs=113.1

Q ss_pred             ceEEEEEcCCCCeEEEEecCCC----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---  224 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---  224 (458)
                      .+....++|++..++++.+..|    .++++|+++++.+...-           .......+.|.+++..++.+...   
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-----------~~~~~~~~~W~~d~~~~~y~~~~~~~  193 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-----------ENPKFSSVSWSDDGKGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-----------EEEESEEEEECTTSSEEEEEECSTTT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-----------cccccceEEEeCCCCEEEEEEeCccc
Confidence            3446789999966666655555    49999999996654321           11122349999985445555432   


Q ss_pred             -------CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc-cc-eeEEEeCCCCcEEEEec-C----CcEEEEEcc
Q 012712          225 -------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ-VG-ITGLAFSDQSELLVSYN-D----EFIYLFTQD  290 (458)
Q Consensus       225 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-i~~~~~~~~~~~l~~~~-~----~~i~i~~~~  290 (458)
                             ...|+.|.+.+......             .+..... .. ...+..++++++|+... .    ..+++.++.
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~~~d~-------------lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~  260 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQSEDE-------------LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD  260 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-GGG-E-------------EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred             ccccCCCCcEEEEEECCCChHhCe-------------eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence                   23477788776542211             1222222 22 56788999999877543 2    237777776


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec---CCCeE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRI  367 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~dg~i  367 (458)
                      .....                                  ......+...... ....+..  ..+.+++...   .++.|
T Consensus       261 ~~~~~----------------------------------~~~~~~l~~~~~~-~~~~v~~--~~~~~yi~Tn~~a~~~~l  303 (414)
T PF02897_consen  261 DGGSP----------------------------------DAKPKLLSPREDG-VEYYVDH--HGDRLYILTNDDAPNGRL  303 (414)
T ss_dssp             CTTTS----------------------------------S-SEEEEEESSSS--EEEEEE--ETTEEEEEE-TT-TT-EE
T ss_pred             ccCCC----------------------------------cCCcEEEeCCCCc-eEEEEEc--cCCEEEEeeCCCCCCcEE
Confidence            53100                                  0112222222211 1122222  2444444332   34677


Q ss_pred             EEEEecCCeE---EEEeecCCc--eeeEEEecCCCCeEE-EeecCC--cEEEecCC-ccccccccc-ccccEEEEEEecC
Q 012712          368 FIWKKKGGEL---IRVIEADRH--VVNCIEPHPHSTVLA-SSGIES--DIKILTPN-AADRATLPT-NIEQVCFSIYSAD  437 (458)
Q Consensus       368 ~iwd~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~-s~~~d~--~i~iw~~~-~~~~~~~~~-~~~~v~~~~~s~d  437 (458)
                      ...++.....   ...+..+..  .+..+..  .+.+|+ ..-.++  .|+++++. +.....+.. ..+.|..+...++
T Consensus       304 ~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~  381 (414)
T PF02897_consen  304 VAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFD  381 (414)
T ss_dssp             EEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT
T ss_pred             EEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCC
Confidence            7777776652   235555554  4555544  444444 444443  68889998 554433222 2334566665566


Q ss_pred             C
Q 012712          438 Y  438 (458)
Q Consensus       438 ~  438 (458)
                      +
T Consensus       382 ~  382 (414)
T PF02897_consen  382 S  382 (414)
T ss_dssp             -
T ss_pred             C
Confidence            6

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.44  E-value=0.086  Score=47.81  Aligned_cols=156  Identities=11%  Similarity=0.107  Sum_probs=83.2

Q ss_pred             CceEEEEEecCCCEEE-Eec--CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCC--CCeEEEEEcCCCcEEEeecc
Q 012712           62 GCVNTVSFNTDGDILI-SGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT--DDRSIVTCAADGQVRHAQIL  136 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~-s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~dg~i~vw~~~  136 (458)
                      .+|..++|. ||+.++ |.=  .+|.+++=|   ...+     +.-+.|..+.|.|..  +...|++......|.||.+.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            578899997 565444 321  123222211   1222     333568999999931  23345555556889999986


Q ss_pred             cc-----cceeee--ecc-ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          137 ER-----GGVETK--LLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       137 ~~-----~~~~~~--~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      ..     +....+  .+. ...---..+.|+|... +|+.-.....-.+++++.....-.....         ..+.|.|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~---------~~G~IhC  160 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIK---------TSGLIHC  160 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEecc---------CCceEEE
Confidence            22     211111  010 0111124678999884 4444443333345565544332222211         4457999


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      .+|.+||.+++++.+..=.-++||-...
T Consensus       161 ACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  161 ACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            9999986555555555555678886554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.44  E-value=0.015  Score=54.12  Aligned_cols=129  Identities=12%  Similarity=0.132  Sum_probs=86.0

Q ss_pred             EEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        49 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      ..+....++...-....-+.-|.-++..++-+....+.|||...+.......-...+.|.++.|...++++.+++.|...
T Consensus        17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence            34455555655555666666666565555555556899999988875444322457899999998777999999999999


Q ss_pred             cEEEeecc-----ccc----ceeeeeccccc-cceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          129 QVRHAQIL-----ERG----GVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       129 ~i~vw~~~-----~~~----~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      .|.++.-.     ...    .+....+..|+ .+|.+..|.++| .+++.++  +.+.++|-
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeC--CEEEEECC
Confidence            99988532     111    12223344555 689999999999 5444333  56788864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.40  E-value=0.079  Score=46.52  Aligned_cols=210  Identities=15%  Similarity=0.094  Sum_probs=95.0

Q ss_pred             CCCeEEEee-CCCcEEEEEccccccccccccccccccccceEEeeeeeEeec---CC----CceEEEEEecCCCEEEEec
Q 012712            9 NNKRARTSV-DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HR----GCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         9 ~~~~l~~~~-~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~~~~s~~~~~l~s~~   80 (458)
                      ..++|+..+ ..+.|.|.|+.+.-.-.+                 +.+.++.   +.    ..-..+.--|+|+.++|+=
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~-----------------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~l  148 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPR-----------------LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISAL  148 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-E-----------------EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCc-----------------eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEec
Confidence            456666655 788899999985432221                 1122221   11    1111222346788887742


Q ss_pred             ------CCCeEEEEECCCcceeeeeccC--CCcceeEEEEccCCCCeEEEEEcC--------------------CCcEEE
Q 012712           81 ------DDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAA--------------------DGQVRH  132 (458)
Q Consensus        81 ------~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~--------------------dg~i~v  132 (458)
                            .-|-+.+.|-++.+........  ...--+..-|.|  ..+.++|...                    ...+.+
T Consensus       149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~v  226 (461)
T PF05694_consen  149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHV  226 (461)
T ss_dssp             EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEE
T ss_pred             cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEE
Confidence                  2356888887777766555332  223346677778  7777777542                    357999


Q ss_pred             eecccccceeeeeccccccceEEEEEc--CCCCeEEEEecCCCeEEEEeC-CCCCc--cceeeecccC--CC--Cc----
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIE--PGSPHVFYTCGEDGLVQHFDL-RTGAA--TELFTCRPID--DR--RN----  199 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~-~~~~~--~~~~~~~~~~--~~--~~----  199 (458)
                      ||+.+.+.++...+.........+.|.  |+...-++.+.-.++|..|-- +.++-  .+.+......  ..  ..    
T Consensus       227 WD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~  306 (461)
T PF05694_consen  227 WDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP  306 (461)
T ss_dssp             EETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred             EECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence            999999888876665444445566664  555455565555666666643 33321  1122211110  00  00    


Q ss_pred             -ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          200 -YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       200 -~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                       -.-..-++.+.+|.|+..+.+++-..|.|+.||+....
T Consensus       307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence             00123478899999865555667789999999998653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0044  Score=54.69  Aligned_cols=151  Identities=15%  Similarity=0.141  Sum_probs=97.9

Q ss_pred             CCeEEE-EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe------EEEEecCCCeEEEEeCCCCCcccee
Q 012712          117 DDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH------VFYTCGEDGLVQHFDLRTGAATELF  189 (458)
Q Consensus       117 ~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~  189 (458)
                      +.++|+ ++.....++-.|++.++.+..  ..-+.. |+-+.+.|+...      .-+.|-.|..|.-||++-...- .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeE--Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEE--WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeE--eeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-ee
Confidence            444444 444456677788888887765  333433 677777776421      1234566788999998843321 11


Q ss_pred             eecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEe
Q 012712          190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF  269 (458)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  269 (458)
                      ...+.   ..........|.+-..+  .++++|+.+|.|++||- .+..              .+..+++-..+|..+..
T Consensus       420 ~~~q~---kqy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdr-i~~~--------------AKTAlPgLG~~I~hVdv  479 (644)
T KOG2395|consen  420 AVVQS---KQYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDR-IGRR--------------AKTALPGLGDAIKHVDV  479 (644)
T ss_pred             eeeec---cccccccccceeeecCC--ceEEEeecCCcEEeehh-hhhh--------------hhhcccccCCceeeEEe
Confidence            11111   01112335667776665  48999999999999997 3332              23345556678999999


Q ss_pred             CCCCcEEEEecCCcEEEEEccC
Q 012712          270 SDQSELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       270 ~~~~~~l~~~~~~~i~i~~~~~  291 (458)
                      +.+|++|++.++..+.+.++.-
T Consensus       480 tadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  480 TADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             eccCcEEEEecccEEEEEEEec
Confidence            9999999999999888887654

>PHA02713 hypothetical protein; Provisional

Probab=97.36  E-value=0.024  Score=53.43  Aligned_cols=67  Identities=18%  Similarity=0.109  Sum_probs=43.3

Q ss_pred             CCcEEEEecCC------CeEEEEEecC---CeEEEEeecCCceeeEEEecCCCCeEEEeecCC--cEEEecCCccccccc
Q 012712          354 KCEYVVSGSDC------GRIFIWKKKG---GELIRVIEADRHVVNCIEPHPHSTVLASSGIES--DIKILTPNAADRATL  422 (458)
Q Consensus       354 ~~~~l~~~~~d------g~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--~i~iw~~~~~~~~~~  422 (458)
                      +++..+.|+.+      ..+..||..+   ++.+..+.........+++  ++++.++||.|+  .+..||+.+.+...+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence            67777777654      2467898875   3444444433333333333  788999999888  778888888776544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.34  E-value=0.18  Score=49.15  Aligned_cols=215  Identities=13%  Similarity=0.042  Sum_probs=116.0

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEe----------------cCC
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN----------------TDG   73 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------~~~   73 (458)
                      +..|+.++.++.|.-.|..||+.+-+.........  .          ..| ...+.+++.                .++
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~--~----------~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~  260 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEA--G----------RQH-QTCRGVSYYDAPAAAAGPAAPAAPADCA  260 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccc--c----------ccc-ccccceEEecCCcccccccccccccccC
Confidence            45688888899999999999998865221110000  0          000 000111111                134


Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCccee-------------EEEEccCCCCeEEEEEcC----------CCcE
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF-------------QAKIMPFTDDRSIVTCAA----------DGQV  130 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~-------------~~~~~~~~~~~~l~s~~~----------dg~i  130 (458)
                      ..++.++.|+.+.-.|.++|+.+..+-  ..+.|.             .+.-.|.-.+..++.++.          +|.|
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            578888889999999999999887652  222210             111112112335555532          5889


Q ss_pred             EEeecccccceeeeecccc-------c--------cce-EEEEEcCCCCeEEEEec------------------CCCeEE
Q 012712          131 RHAQILERGGVETKLLGKH-------Q--------GRA-HKLAIEPGSPHVFYTCG------------------EDGLVQ  176 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~-------~--------~~v-~~~~~~~~~~~~l~s~~------------------~dg~i~  176 (458)
                      +-+|+++++..........       .        ..+ ..++++|.. .+++...                  ..+.|.
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEE
Confidence            9999999987654322100       0        011 233444544 2222211                  235677


Q ss_pred             EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC---cEEEEecCCCeEEEEecCCCccCCC
Q 012712          177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                      -.|+++++....++....... .........-+.+...++   ..++.++.+|.++++|.++++.+..
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~W-D~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLW-DMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             EEeCCCCceEEEecccCCccc-cccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            778888888776654221110 000111111122222123   3788999999999999999986544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.33  E-value=0.093  Score=45.87  Aligned_cols=66  Identities=9%  Similarity=-0.154  Sum_probs=40.0

Q ss_pred             ceeeEEEecC-------CCCeEEEeecCCcEEEecCCcccc----ccc-ccccccEEEEEEecCCcEEEeeecCCceE
Q 012712          386 HVVNCIEPHP-------HSTVLASSGIESDIKILTPNAADR----ATL-PTNIEQVCFSIYSADYWWSKSQNFSCSIL  451 (458)
Q Consensus       386 ~~v~~~~~s~-------~~~~l~s~~~d~~i~iw~~~~~~~----~~~-~~~~~~v~~~~~s~d~~~l~s~~~d~~i~  451 (458)
                      ..+..+.|..       .|.++++.-..+.|....++.+..    ..+ .....++..+++.|||.+.++-..+|.|.
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4566777654       344566555566777777663321    122 23444799999999998888877888763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.32  E-value=0.089  Score=49.59  Aligned_cols=234  Identities=15%  Similarity=0.190  Sum_probs=125.3

Q ss_pred             CCeEEEEEcCCC------cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC------CeEEEEeCCCCC
Q 012712          117 DDRSIVTCAADG------QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGA  184 (458)
Q Consensus       117 ~~~~l~s~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~  184 (458)
                      .+.+++.||.++      .+..+|..++.......+. ....-.+++... + .+.++|+.|      ..+..||.++.+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCc
Confidence            456677777663      5778888777554433333 222234445444 3 688999988      357888888776


Q ss_pred             ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe-----EEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712          185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-----TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD  259 (458)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (458)
                      -...-   +....+   .  .. +++..  ++.+.++|+.||.     +..||..+.+......             +..
T Consensus       361 W~~~a---~M~~~R---~--~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-------------m~~  416 (571)
T KOG4441|consen  361 WTPVA---PMNTKR---S--DF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-------------MLT  416 (571)
T ss_pred             eeccC---CccCcc---c--cc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-------------CCc
Confidence            33311   111100   1  11 12222  4678899998864     7788888876532211             100


Q ss_pred             cccceeEEEeCCCCcEEEEec-CC------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          260 EQVGITGLAFSDQSELLVSYN-DE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~-~~------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                      ......  .-.-+|++.+.|+ ++      .+..||..++.-..                                    
T Consensus       417 ~r~~~g--v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~------------------------------------  458 (571)
T KOG4441|consen  417 RRSGHG--VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL------------------------------------  458 (571)
T ss_pred             ceeeeE--EEEECCEEEEEcCcCCCccccceEEEEcCCCCceee------------------------------------
Confidence            011111  1223566666665 22      37788877643211                                    


Q ss_pred             ceeecCccceeeeeEEEEecCCCcEEEEecCCC-----eEEEEEecCCeE--EEEeecCCceeeEEEecCCCCeEEEeec
Q 012712          333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-----RIFIWKKKGGEL--IRVIEADRHVVNCIEPHPHSTVLASSGI  405 (458)
Q Consensus       333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~  405 (458)
                      ...+.....   -..++  .-++.+.+.|+.|+     +|..||..+.+-  +..+......+....+  +++..++|+.
T Consensus       459 ~~~M~~~R~---~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~  531 (571)
T KOG4441|consen  459 IAPMNTRRS---GFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGF  531 (571)
T ss_pred             cCCcccccc---cceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecc
Confidence            111111111   12233  23778888888876     367788765433  2223322222222333  6677888888


Q ss_pred             CC-----cEEEecCCccccccc
Q 012712          406 ES-----DIKILTPNAADRATL  422 (458)
Q Consensus       406 d~-----~i~iw~~~~~~~~~~  422 (458)
                      ||     +|..||..+.+....
T Consensus       532 ~~~~~l~~ve~ydp~~d~W~~~  553 (571)
T KOG4441|consen  532 DGNNNLNTVECYDPETDTWTEV  553 (571)
T ss_pred             cCccccceeEEcCCCCCceeeC
Confidence            76     577888877655433

>PHA02713 hypothetical protein; Provisional

Probab=97.20  E-value=0.054  Score=51.11  Aligned_cols=95  Identities=15%  Similarity=0.227  Sum_probs=48.0

Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------CcEEEeecccccceeeeeccccccceEEEE
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLA  157 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~  157 (458)
                      .+..||..+++-...-.......-.+++. -  ++..++.||.+      ..+..||..++.......+....... +++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-V--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-E--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence            56778887765321110011111122333 2  67788888754      24667887766543222122111122 222


Q ss_pred             EcCCCCeEEEEecCCC-----eEEEEeCCCCC
Q 012712          158 IEPGSPHVFYTCGEDG-----LVQHFDLRTGA  184 (458)
Q Consensus       158 ~~~~~~~~l~s~~~dg-----~i~iwd~~~~~  184 (458)
                      . -++ .+.+.||.++     .+..||..+.+
T Consensus       349 ~-~~g-~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        349 V-IDD-TIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             E-ECC-EEEEECCcCCCCCCceEEEEECCCCe
Confidence            2 234 6778888754     47889987764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.19  E-value=0.0017  Score=37.15  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcce
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV   95 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~   95 (458)
                      ...|.+++|+|..++||.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 4443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.03  E-value=0.0022  Score=36.69  Aligned_cols=31  Identities=16%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             CceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          385 RHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       385 ~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      ...|..++|+|...+||.+..+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3568999999999999999999999999983

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.90  E-value=0.0025  Score=49.85  Aligned_cols=101  Identities=7%  Similarity=0.010  Sum_probs=67.1

Q ss_pred             CcEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeE-EEecCCCCeEEEeecCCcEEEecCCcccccccccccc--cEE
Q 012712          355 CEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNC-IEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIE--QVC  430 (458)
Q Consensus       355 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~v~  430 (458)
                      +.-+++|+.+|.|++|+.... ........-...|.+ +.--.++.+..+++.||.|+.|++..++.....++..  ++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            457889999999999987521 111111111222322 2223455578889999999999999888775554443  566


Q ss_pred             EEEEecCCcEEEee--ecCCceEEEEE
Q 012712          431 FSIYSADYWWSKSQ--NFSCSILLFEW  455 (458)
Q Consensus       431 ~~~~s~d~~~l~s~--~~d~~i~~w~~  455 (458)
                      ....+..+++++.+  +.|..++.|+.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcch
Confidence            66667777777777  88888888864

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.87  E-value=0.45  Score=46.04  Aligned_cols=127  Identities=15%  Similarity=0.129  Sum_probs=75.4

Q ss_pred             CeEEEeeCCCcEEEEEcccccccccccccccccc-ccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRAS-EDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      +-|+.+. |+.+.+||-....+...+.-...... .+...+++.+.....-.-.|..|.++|+|.+||..|..+. .|-.
T Consensus        34 rNLl~~~-d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~  111 (717)
T PF10168_consen   34 RNLLACR-DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGV-VVLE  111 (717)
T ss_pred             eeeEEEe-CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcE-EEEE
Confidence            3455555 78999999986554333211111111 1111122222112223457999999999999999988764 4433


Q ss_pred             CCC----------cce--eee--------eccCCCcceeEEEEccCC-CCeEEEEEcCCCcEEEeeccccc
Q 012712           90 WKT----------ERV--KLS--------FHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        90 ~~~----------~~~--~~~--------~~~~~~~~i~~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      +..          +..  ..+        +...+...|..+.|+|.. ++..|+.-..|+.+++||+....
T Consensus       112 LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  112 LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            321          111  111        112345689999999943 35788888889999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.83  E-value=0.0063  Score=47.67  Aligned_cols=105  Identities=12%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEE-EEecCCCEEEEecCCCeEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTV-SFNTDGDILISGSDDRRVILW   88 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~s~~~d~~i~iw   88 (458)
                      +.-|++|+.+|.|.+|+...-..+..                    ....-...|.++ .--.++.+..+++.|+.|+.|
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d--------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~  129 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSD--------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRAC  129 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHH--------------------hhhcccccceeccccccccceeEEeccCCceeee
Confidence            45588899999999998872111100                    011122333332 223355688899999999999


Q ss_pred             ECCCcceeeeeccCCC-cceeEEEEccCCCCeEEEEE--cCCCcEEEeeccc
Q 012712           89 DWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTC--AADGQVRHAQILE  137 (458)
Q Consensus        89 d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~--~~dg~i~vw~~~~  137 (458)
                      ++.-.+.+... ..|. .++.....+.  .++.++.+  |.|..++.|++..
T Consensus       130 n~~p~k~~g~~-g~h~~~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  130 NIKPNKVLGYV-GQHNFESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccCceeeee-ccccCCCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence            99877765554 4555 4444444443  45555555  5566666666544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.0062  Score=58.54  Aligned_cols=100  Identities=11%  Similarity=0.099  Sum_probs=71.8

Q ss_pred             CCcEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-cccccccc---
Q 012712          354 KCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQ---  428 (458)
Q Consensus       354 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~---  428 (458)
                      .+.+++.|+..|.+...|+... .+...=..-.++|++++|+.+|+.++.|-.+|.|.+||...++.. .+..+..+   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4557888999999999888442 111111123468999999999999999999999999999997665 33444444   


Q ss_pred             EEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          429 VCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       429 v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      +..+.+..++..+.++..-|+  +|+.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            555556667777778777776  6654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.68  E-value=0.093  Score=46.75  Aligned_cols=97  Identities=14%  Similarity=0.130  Sum_probs=56.4

Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEE-EecC-----Ce--EE-EEeec----CCceeeEEEecCCCCeEEEeecC-----
Q 012712          345 VKGVNFFGPKCEYVVSGSDCGRIFIW-KKKG-----GE--LI-RVIEA----DRHVVNCIEPHPHSTVLASSGIE-----  406 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~~~dg~i~iw-d~~~-----~~--~~-~~~~~----~~~~v~~~~~s~~~~~l~s~~~d-----  406 (458)
                      ...+++ .++| +++ +... .|..+ |...     ++  .+ ..+..    +......++|.|||.+.++-+..     
T Consensus        74 p~Gi~~-~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        74 VTGLAV-AVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             ccceeE-ecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            467777 8888 444 3333 45444 4321     12  11 12222    13457889999999877655521     


Q ss_pred             --------------CcEEEecCCcccccccccccccEEEEEEecCCcEEEeee
Q 012712          407 --------------SDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQN  445 (458)
Q Consensus       407 --------------~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  445 (458)
                                    |.|.-++..+++...+.........++|+|+|.++++-.
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                          345555666555444444444467899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.55  E-value=0.48  Score=41.51  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=48.4

Q ss_pred             CceeecCccceeeeeEEEEecC------CCcEEEEecCCCeEEEEEecCCeEEE---E-eecCCceeeEEEecCCCCeEE
Q 012712          332 APQVYKGHRNCVTVKGVNFFGP------KCEYVVSGSDCGRIFIWKKKGGELIR---V-IEADRHVVNCIEPHPHSTVLA  401 (458)
Q Consensus       332 ~~~~~~~~~~~~~i~~~~~~s~------~~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~l~  401 (458)
                      +...+..|..   +..+.|+.-      .|+++++.-..+.|....++.+..+.   . +......+..+++.|||.+++
T Consensus       245 P~~~~~~~~a---p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv  321 (331)
T PF07995_consen  245 PVFAYPPHSA---PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV  321 (331)
T ss_dssp             -SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred             cceeecCccc---cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence            4445555544   566666321      56677777667889988887554332   2 223444799999999999998


Q ss_pred             EeecCCcEE
Q 012712          402 SSGIESDIK  410 (458)
Q Consensus       402 s~~~d~~i~  410 (458)
                      +.+.+|.|.
T Consensus       322 ~~d~~G~iy  330 (331)
T PF07995_consen  322 SDDSDGKIY  330 (331)
T ss_dssp             EE-TTTTEE
T ss_pred             EECCCCeEe
Confidence            888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.016  Score=55.83  Aligned_cols=102  Identities=14%  Similarity=0.133  Sum_probs=71.7

Q ss_pred             CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc
Q 012712           72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG  151 (458)
Q Consensus        72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  151 (458)
                      .+..++.|+..|.+-..|....-.....-..-.++|++++|+.  +|..++.|-.+|.|.+||+..++....  +..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k~l~~--i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAKILKV--ITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCcceee--eeecCC
Confidence            4567888888899988887653221111123467999999999  999999999999999999988877665  444544


Q ss_pred             ceEEE---EEcCCCCeEEEEecCCCeEEEEeC
Q 012712          152 RAHKL---AIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       152 ~v~~~---~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      +.+.+   .+..++ ..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence            44433   344445 46788877776  5554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.47  E-value=0.32  Score=38.66  Aligned_cols=91  Identities=8%  Similarity=0.101  Sum_probs=61.2

Q ss_pred             eEEEEecCCCcEEE-EecCCCeEEEEE--ecCCeE-----EEEeec----CCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          346 KGVNFFGPKCEYVV-SGSDCGRIFIWK--KKGGEL-----IRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       346 ~~~~~~s~~~~~l~-~~~~dg~i~iwd--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      +.++| +.+.+.++ +-+.+-+|.-||  ..+|..     +..++.    .....-.+++..+|++.+++-..++|...|
T Consensus       161 Ngl~W-d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAW-DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccc-cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            56777 77666554 455667787777  555532     233322    112234566677888888888889999999


Q ss_pred             CCccccc-ccccccccEEEEEEecC
Q 012712          414 PNAADRA-TLPTNIEQVCFSIYSAD  437 (458)
Q Consensus       414 ~~~~~~~-~~~~~~~~v~~~~~s~d  437 (458)
                      +.+++.+ ++.-...+|++++|---
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCC
Confidence            9999776 44445677999999754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.42  E-value=0.65  Score=41.53  Aligned_cols=75  Identities=12%  Similarity=0.210  Sum_probs=51.0

Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce-eeEEEecCC-----------------CC-eEEEeec
Q 012712          345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV-VNCIEPHPH-----------------ST-VLASSGI  405 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~-----------------~~-~l~s~~~  405 (458)
                      +.+++. +|++++.|+...=|+|.++|+.++..++.+++..+. +.-+.....                 .. +++-+-.
T Consensus       310 ~~~i~~-sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  310 GESICL-SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             EEEEEE-CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            778887 999999888877799999999999888888775532 111111111                 11 2334566


Q ss_pred             CCcEEEecCCccccc
Q 012712          406 ESDIKILTPNAADRA  420 (458)
Q Consensus       406 d~~i~iw~~~~~~~~  420 (458)
                      -|.|.||++..+.++
T Consensus       389 Rg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  389 RGILEVWSMRQGPRV  403 (415)
T ss_pred             CCeEEEEecCCCCEE
Confidence            788889988766543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=0.093  Score=51.35  Aligned_cols=153  Identities=8%  Similarity=-0.040  Sum_probs=90.3

Q ss_pred             cccceeEEEeCCCCcEEEEec--CC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          260 EQVGITGLAFSDQSELLVSYN--DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~--~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                      ...++..+...+|+.+.++..  +| .|+.||+..-........                             ......-
T Consensus        99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~-----------------------------~pl~~s~  149 (1405)
T KOG3630|consen   99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETT-----------------------------VPLKNSA  149 (1405)
T ss_pred             ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhc-----------------------------ccccccc
Confidence            345677788888877655433  44 589999876322111000                             0000000


Q ss_pred             cCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEecCCeE-EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          337 KGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKGGEL-IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      ..........++.| .|.=. ..+....|+.|++..+..... +..+ .-....++++|+|.|+.++.|-..|++.-|..
T Consensus       150 ts~ek~vf~~~~~w-nP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  150 TSFEKPVFQLKNVW-NPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             chhccccccccccc-cCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec
Confidence            01111112445555 44321 234556788888877643322 2222 23456899999999999999999999999987


Q ss_pred             Ccccccccc----cccccEEEEEEecCCcEEEe
Q 012712          415 NAADRATLP----TNIEQVCFSIYSADYWWSKS  443 (458)
Q Consensus       415 ~~~~~~~~~----~~~~~v~~~~~s~d~~~l~s  443 (458)
                      .-.....+.    ....+|.+++|-....||++
T Consensus       228 ~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  228 SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            755332221    12467999999988888775

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.27  E-value=0.55  Score=39.23  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=86.1

Q ss_pred             ceEEEEEecCCCEEEEec---CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee-cccc
Q 012712           63 CVNTVSFNTDGDILISGS---DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ-ILER  138 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~-~~~~  138 (458)
                      .+.+.+++++++.+|...   ....+.++...  ........+  ..+....|++  ++...+....+...+++. ..++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~--~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDP--DGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccC--CCCEEEEEcCCCceEEEEecCCC
Confidence            688999999998777655   33455555543  333333222  3788889999  877776666666667764 2333


Q ss_pred             cceeee-eccccccceEEEEEcCCCCeEEEEe--cCCCeEEEEeCCCCCcc--ceeeecccCCCCcceeecceEEEEECC
Q 012712          139 GGVETK-LLGKHQGRAHKLAIEPGSPHVFYTC--GEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       139 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      ...... ....-...|..+.++|||.++.+..  ..++.|.+--+.....-  ..+... .....  .....+..++|.+
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~-~~~~~--~~~~~v~~v~W~~  175 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP-RRVAP--PLLSDVTDVAWSD  175 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc-eEecc--cccCcceeeeecC
Confidence            322211 1111112899999999996655444  23466766654322111  111100 00000  0234688999999


Q ss_pred             CCCcEEEEecCCC
Q 012712          214 RNANLFAVAGSDE  226 (458)
Q Consensus       214 ~~~~~l~~~~~dg  226 (458)
                      + ..+++.+...+
T Consensus       176 ~-~~L~V~~~~~~  187 (253)
T PF10647_consen  176 D-STLVVLGRSAG  187 (253)
T ss_pred             C-CEEEEEeCCCC
Confidence            7 45555554433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.26  Score=38.38  Aligned_cols=135  Identities=12%  Similarity=0.122  Sum_probs=75.9

Q ss_pred             cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc---eEEE
Q 012712           80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKL  156 (458)
Q Consensus        80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---v~~~  156 (458)
                      -.+|.-..+|.++.+++.++  ...+.=+.++.    |+..|+.+....+++.-|.++-....+........+   ++.+
T Consensus       108 w~egvaf~~d~~t~~~lg~~--~y~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNEL  181 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRF--SYEGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNEL  181 (262)
T ss_pred             eccceeEEEChHHhhhhccc--ccCCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccce
Confidence            35677888999888887776  34455566665    566677776666777777665443332222222222   3334


Q ss_pred             EEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc--eeecceEEEEECCCCCcEEEEe
Q 012712          157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      .|- +| .+.+-.-.+..|...|.++|+.+..+........-..  .+..-.+.+++.|+.++++++|
T Consensus       182 E~V-dG-~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         182 EWV-DG-ELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             eee-cc-EEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            443 23 3444444445566667777776665544332221110  1233567899999855666665

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.23  E-value=0.46  Score=37.86  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=40.5

Q ss_pred             EEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEec
Q 012712          347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH  394 (458)
Q Consensus       347 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  394 (458)
                      .++. +.+|++.++.-..++|...|..+|+.+.+++-....|++++|-
T Consensus       216 Gm~I-D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  216 GMTI-DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             cceE-ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            3444 7788888888888999999999999999999888899999995

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.23  Score=43.64  Aligned_cols=157  Identities=14%  Similarity=0.210  Sum_probs=97.9

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+||...+++|++-. .|.+.=|-+..-.             +|....     .-..-+++|.++.||+|.+.||.--.+
T Consensus        27 gvFfDDaNkqlfavr-Sggatgvvvkgpn-------------dDVpiS-----fdm~d~G~I~SIkFSlDnkilAVQR~~   87 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVR-SGGATGVVVKGPN-------------DDVPIS-----FDMDDKGEIKSIKFSLDNKILAVQRTS   87 (657)
T ss_pred             ceeeccCcceEEEEe-cCCeeEEEEeCCC-------------CCCCce-----eeecCCCceeEEEeccCcceEEEEecC
Confidence            467777777766655 3445566655111             111111     112356799999999999999999999


Q ss_pred             CeEEEEECCCcceeeeec---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           83 RRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      ++|.+++....+......   +..+..|....|+.   ..-+|.-...| +-+|.+...... .+..+.|...|+-..|.
T Consensus        88 ~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y~v~pekrs-lRlVks~~~nvnWy~yc  162 (657)
T KOG2377|consen   88 KTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFYQVLPEKRS-LRLVKSHNLNVNWYMYC  162 (657)
T ss_pred             ceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEEEEchhhhh-hhhhhhcccCccEEEEc
Confidence            999999985544433321   23345689999984   46666665544 667765443322 12366788889999999


Q ss_pred             CCCCeEEEEec-CCCeEEEEeCCCC
Q 012712          160 PGSPHVFYTCG-EDGLVQHFDLRTG  183 (458)
Q Consensus       160 ~~~~~~l~s~~-~dg~i~iwd~~~~  183 (458)
                      ++..-.|++.+ ..+++.=+.++++
T Consensus       163 ~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  163 PETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             cccceEeeeccccccccccEEEeec
Confidence            98744444444 3444444444444

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.16  E-value=0.67  Score=44.18  Aligned_cols=101  Identities=10%  Similarity=0.047  Sum_probs=71.1

Q ss_pred             CCcEEEEecCCCeEEEEEecC-------C----e---------EEEEeecCCceeeEEEec--CCCCeEEEeecCCcEEE
Q 012712          354 KCEYVVSGSDCGRIFIWKKKG-------G----E---------LIRVIEADRHVVNCIEPH--PHSTVLASSGIESDIKI  411 (458)
Q Consensus       354 ~~~~l~~~~~dg~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~i~i  411 (458)
                      +...|+.+.+||.|.+|.+++       .    +         +-..+. -....++++++  ...++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            456888899999999997631       1    0         111122 23468999998  88889999988888888


Q ss_pred             ecCCcc--cccc--cccccccEEEEEEecCC------cEEEeeecCCceEEEEE
Q 012712          412 LTPNAA--DRAT--LPTNIEQVCFSIYSADY------WWSKSQNFSCSILLFEW  455 (458)
Q Consensus       412 w~~~~~--~~~~--~~~~~~~v~~~~~s~d~------~~l~s~~~d~~i~~w~~  455 (458)
                      |-....  +...  ...+...|.+++|-++.      .++++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            765542  1111  22355568899987655      38999999999999987

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA03098 kelch-like protein; Provisional

Probab=96.14  E-value=0.66  Score=44.00  Aligned_cols=150  Identities=13%  Similarity=0.097  Sum_probs=74.7

Q ss_pred             CCCEEEEecCC-----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------CcEEEeecccccc
Q 012712           72 DGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGG  140 (458)
Q Consensus        72 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~i~vw~~~~~~~  140 (458)
                      +++..+.||.+     ..+..||..+++-...-...+...-.+++. -  ++...+.||.+      ..+..||..+++.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-V--NNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-E--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            57777778765     357778877654321110011111112222 2  67777777742      3577888876654


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEecCC--------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      .....+...... .++.. .++ .+++.|+.+        ..+..||..+.+-...-... .       .......+.+ 
T Consensus       419 ~~~~~~p~~r~~-~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~-------~r~~~~~~~~-  486 (534)
T PHA03098        419 SKGSPLPISHYG-GCAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-F-------PRINASLCIF-  486 (534)
T ss_pred             eecCCCCccccC-ceEEE-ECC-EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-c-------ccccceEEEE-
Confidence            332112111111 12222 234 667777643        23888898876543221110 0       0001122222 


Q ss_pred             CCCCcEEEEecCC-----CeEEEEecCCCcc
Q 012712          213 PRNANLFAVAGSD-----EYTRLYDIRKYKW  238 (458)
Q Consensus       213 p~~~~~l~~~~~d-----g~i~i~d~~~~~~  238 (458)
                       + +.+++.|+.+     ..+.+||..+.+.
T Consensus       487 -~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        487 -N-NKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             -C-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence             3 5677777654     4688888887664

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.13  E-value=0.15  Score=47.85  Aligned_cols=102  Identities=13%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             cCCCcEEEEecCCCeEEEEEecCCeEEEEee-cCCceeeEEEec--CCCCeEEEeecCCcEEEecCCc-----c------
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPH--PHSTVLASSGIESDIKILTPNA-----A------  417 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~s~~~d~~i~iw~~~~-----~------  417 (458)
                      +.-++..++-+...++.|||...+....+-. ...+.|.++.|.  |+++.+.+.|..+.|.+|.-..     .      
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~  117 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP  117 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence            4455555555555689999998887543332 346789999985  7899999999999999985421     1      


Q ss_pred             -ccccccccc-ccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          418 -DRATLPTNI-EQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       418 -~~~~~~~~~-~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                       +...+..+. .+|.+..|.++|.+++.++  +.+.|++-
T Consensus       118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             eEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence             111223333 4688999999998886543  46777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.09  E-value=0.69  Score=38.65  Aligned_cols=112  Identities=13%  Similarity=0.022  Sum_probs=62.8

Q ss_pred             ceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712          152 RAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR  229 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  229 (458)
                      .+.+.++++++..+.+...  ....++++.  .+.......           ....+..-+|+++ +...+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-----------~g~~l~~PS~d~~-g~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-----------TGGSLTRPSWDPD-GWVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-----------cCCccccccccCC-CCEEEEEcCCCceE
Confidence            6888999999954444442  233455544  333332221           1125677889998 55655555555666


Q ss_pred             EEe-cCCCccCCCccCCCCCCCcCCCccccccc-cceeEEEeCCCCcEEEEec----CCcEEEEEcc
Q 012712          230 LYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQ-VGITGLAFSDQSELLVSYN----DEFIYLFTQD  290 (458)
Q Consensus       230 i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~----~~~i~i~~~~  290 (458)
                      ++. ...++...             ........ ..|..+.++|||..++...    ++.+++--+.
T Consensus        91 ~~~~~~~g~~~~-------------~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   91 VVRDSASGTGEP-------------VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             EEEecCCCccee-------------EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence            663 22222110             00111111 2899999999999877655    4466666554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.03  E-value=0.032  Score=30.88  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=26.9

Q ss_pred             ceEEEEECCCCC--cEEEEecCCCeEEEEecCC
Q 012712          205 NLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       205 ~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~  235 (458)
                      .+.++.|+|.++  .+|+.+-..|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            588999998755  6888888899999999995

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.01  E-value=1.2  Score=40.82  Aligned_cols=122  Identities=11%  Similarity=0.073  Sum_probs=75.6

Q ss_pred             cCCCceEEEEEecCC----CEEEEecCCCeEEEEECCC-----cceeee----eccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           59 KHRGCVNTVSFNTDG----DILISGSDDRRVILWDWKT-----ERVKLS----FHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~----~~l~s~~~d~~i~iwd~~~-----~~~~~~----~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      |.-+.|..++|.|-+    ..|+.......|.||.+..     ++.+..    +.....---..+.|+|  ....|+.-.
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT  131 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLT  131 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEe
Confidence            344569999999953    2344455668899998752     222111    1011111224577999  777776655


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG  183 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  183 (458)
                      ....-.+.++..........+ ...+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            544444566655544333334 355789999999999777777776667789986554

>PRK10115 protease 2; Provisional

Probab=95.94  E-value=1.8  Score=42.23  Aligned_cols=73  Identities=12%  Similarity=0.052  Sum_probs=47.8

Q ss_pred             cceeEEEEccCCCCeEEEEEcC-----CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----Ce
Q 012712          105 DNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GL  174 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~  174 (458)
                      -.+..+.++|  |+++|+.+..     ...|++-|+.++..+... +..   .-..++|.+++..++++...+     ..
T Consensus       127 ~~l~~~~~Sp--dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITP--DNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECC--CCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccC---cceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence            3567788999  9998886533     235888888877533221 221   114599999986666665432     36


Q ss_pred             EEEEeCCCC
Q 012712          175 VQHFDLRTG  183 (458)
Q Consensus       175 i~iwd~~~~  183 (458)
                      |+.+++.++
T Consensus       201 v~~h~lgt~  209 (686)
T PRK10115        201 VWRHTIGTP  209 (686)
T ss_pred             EEEEECCCC
Confidence            788888877

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.90  E-value=0.18  Score=49.53  Aligned_cols=149  Identities=15%  Similarity=0.078  Sum_probs=93.1

Q ss_pred             ceeEEEEccCCCCeEEEE--EcCCCcEEEeeccccccee---eeecc------ccccceEEEEEcCCCCeEEEEecCCCe
Q 012712          106 NVFQAKIMPFTDDRSIVT--CAADGQVRHAQILERGGVE---TKLLG------KHQGRAHKLAIEPGSPHVFYTCGEDGL  174 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~s--~~~dg~i~vw~~~~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~  174 (458)
                      +|..+...+  |+...+.  .+.+-.|..+|+++-....   ...+.      .......++.|+|.=+...+.+..|+.
T Consensus       102 pi~~~v~~~--D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  102 PIVIFVCFH--DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cceEEEecc--CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            455555555  7554433  3344478889987643221   11122      222345678899876666788888999


Q ss_pred             EEEEeCCCCCc-cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712          175 VQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP  253 (458)
Q Consensus       175 i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  253 (458)
                      |++..+..... +..+.           .....++++|+|. |..++.|-.+|++.-|...-......         .++
T Consensus       180 l~V~~~~~~~~~v~s~p-----------~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~leik~~i---------p~P  238 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-----------VTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLEIKSEI---------PEP  238 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-----------cccceeeEEeccc-cceeeEecCCCeEEEeecccceeecc---------cCC
Confidence            98887654332 12222           2335799999998 78999999999998887643311100         011


Q ss_pred             CccccccccceeEEEeCCCCcEEEEec
Q 012712          254 PNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      ..   .....|.++.|-....++++.+
T Consensus       239 p~---~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  239 PV---EENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             Cc---CCCcceeEEEEecceeEEEEec
Confidence            11   1257899999999988888765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.89  E-value=0.054  Score=29.97  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=26.7

Q ss_pred             CceEEEEEecCC---CEEEEecCCCeEEEEECCCc
Q 012712           62 GCVNTVSFNTDG---DILISGSDDRRVILWDWKTE   93 (458)
Q Consensus        62 ~~v~~~~~s~~~---~~l~s~~~d~~i~iwd~~~~   93 (458)
                      ++|+++.|||+.   .+|+.+-..+.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            578999999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=95.86  E-value=1.1  Score=42.55  Aligned_cols=189  Identities=14%  Similarity=0.121  Sum_probs=91.6

Q ss_pred             cCCCEEEEecCCC------eEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCC-----CcEEEeecccc
Q 012712           71 TDGDILISGSDDR------RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILER  138 (458)
Q Consensus        71 ~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~  138 (458)
                      .++..++.||.++      .+..||..+++-...-. ....... +++ .-  ++..++.||.+     ..+..||..++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VF--NNRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence            3556677776542      56778877665422110 1011111 222 22  67788888865     34667887766


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCC------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      .......+...... .+++. -++ .+++.|+.+      ..+..||+.+.+-...-..+  ....      . .+++..
T Consensus       369 ~W~~~~~lp~~r~~-~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~------~-~~~~~~  436 (534)
T PHA03098        369 KWREEPPLIFPRYN-PCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHY------G-GCAIYH  436 (534)
T ss_pred             ceeeCCCcCcCCcc-ceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cccc------C-ceEEEE
Confidence            54332112211111 12222 234 677777732      35788898776543221110  0000      1 122222


Q ss_pred             CCCCcEEEEecCC--------CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---
Q 012712          213 PRNANLFAVAGSD--------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---  281 (458)
Q Consensus       213 p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  281 (458)
                        ++.+++.|+.+        ..+.+||..+.+........          .   .......+.+  ++++++.|+.   
T Consensus       437 --~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~----------~---~r~~~~~~~~--~~~iyv~GG~~~~  499 (534)
T PHA03098        437 --DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN----------F---PRINASLCIF--NNKIYVVGGDKYE  499 (534)
T ss_pred             --CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC----------c---ccccceEEEE--CCEEEEEcCCcCC
Confidence              24666777643        23889999887654321110          0   0111112222  6677776653   


Q ss_pred             ---CcEEEEEccCC
Q 012712          282 ---EFIYLFTQDMG  292 (458)
Q Consensus       282 ---~~i~i~~~~~~  292 (458)
                         +.+..||..+.
T Consensus       500 ~~~~~v~~yd~~~~  513 (534)
T PHA03098        500 YYINEIEVYDDKTN  513 (534)
T ss_pred             cccceeEEEeCCCC
Confidence               25888887764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.79  E-value=0.63  Score=44.35  Aligned_cols=162  Identities=12%  Similarity=0.086  Sum_probs=95.5

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccc-------cccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEEec
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTR-------NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGS   80 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~   80 (458)
                      +.+|+.|. .+.|.||+...-.....       ...+......+..     ..... -...|+.|....  +...|+.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~-----~s~~p-~PHtIN~i~v~~lg~~EVLl~c~  121 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRL-----ISTWP-FPHTINFIKVGDLGGEEVLLLCT  121 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCcccccccccc-----ccCCC-CCceeeEEEecccCCeeEEEEEe
Confidence            55677766 78899999874322211       0011111111111     11111 223466665543  447899999


Q ss_pred             CCCeEEEEECCCc-----------ce-------eeeeccCCCcceeEEEEc--cCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           81 DDRRVILWDWKTE-----------RV-------KLSFHSGHNDNVFQAKIM--PFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        81 ~d~~i~iwd~~~~-----------~~-------~~~~~~~~~~~i~~~~~~--~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      .||.|.+|.+++-           ..       ...+.......+++++++  .  ..++||+++....|.||-......
T Consensus       122 DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~--~~rlIAVSsNs~~VTVFaf~l~~~  199 (717)
T PF08728_consen  122 DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK--KSRLIAVSSNSQEVTVFAFALVDE  199 (717)
T ss_pred             cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC--cceEEEEecCCceEEEEEEecccc
Confidence            9999999976320           00       001111234578899998  6  788889888888898887655311


Q ss_pred             -eeeeeccccccceEEEEEcCCC--Ce---EEEEecCCCeEEEEeC
Q 012712          141 -VETKLLGKHQGRAHKLAIEPGS--PH---VFYTCGEDGLVQHFDL  180 (458)
Q Consensus       141 -~~~~~~~~~~~~v~~~~~~~~~--~~---~l~s~~~dg~i~iwd~  180 (458)
                       .....-..|...|.+|+|.++.  +.   .+++++-.|.+.+|++
T Consensus       200 r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  200 RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence             1111112366788999998754  22   6778888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.68  E-value=0.97  Score=37.11  Aligned_cols=267  Identities=13%  Similarity=0.131  Sum_probs=153.6

Q ss_pred             CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712          104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG  183 (458)
Q Consensus       104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  183 (458)
                      ...-..++-.|  ||..-+++...+.|--.|..+++....  --+....-..+..-|++. .-++-+.. .|.-.|-++.
T Consensus        61 G~ap~dvapap--dG~VWft~qg~gaiGhLdP~tGev~~y--pLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~  134 (353)
T COG4257          61 GSAPFDVAPAP--DGAVWFTAQGTGAIGHLDPATGEVETY--PLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTL  134 (353)
T ss_pred             CCCccccccCC--CCceEEecCccccceecCCCCCceEEE--ecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCccc
Confidence            34456677788  998888888888888888888776543  223445556788889884 33433322 5666666555


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC---------CeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---------EYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      +. ..+......      .........|.+. +++-+++...         +.|++|+...                   
T Consensus       135 ev-t~f~lp~~~------a~~nlet~vfD~~-G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------------  187 (353)
T COG4257         135 EV-TRFPLPLEH------ADANLETAVFDPW-GNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------------  187 (353)
T ss_pred             ce-EEeeccccc------CCCcccceeeCCC-ccEEEeeccccceecCcccCceeeeccCC-------------------
Confidence            43 233322111      3345778899997 5666666421         2344444432                   


Q ss_pred             ccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712          255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP  333 (458)
Q Consensus       255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (458)
                            ......|+..|+|++..+.- ++.|-..|..++... .++                                ..
T Consensus       188 ------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~ae-v~p--------------------------------~P  228 (353)
T COG4257         188 ------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAE-VVP--------------------------------QP  228 (353)
T ss_pred             ------CCCCcceEECCCCcEEEEeccccceEEcccccCCcc-eec--------------------------------CC
Confidence                  23457788899998776654 556777776554210 000                                00


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE-EEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      ..+  +..   .+.+-- +|.|+.-++....+.++.||-....-. ..+.+....-.++.....++.-.+--..|.|.-+
T Consensus       229 ~~~--~~g---sRriws-dpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rf  302 (353)
T COG4257         229 NAL--KAG---SRRIWS-DPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRF  302 (353)
T ss_pred             Ccc--ccc---cccccc-CccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeec
Confidence            000  111   223333 788888888777788888887554311 2334444456677777667666555556778888


Q ss_pred             cCCcccccccccccccEEEEEEe--cCCcEEEeeecCC
Q 012712          413 TPNAADRATLPTNIEQVCFSIYS--ADYWWSKSQNFSC  448 (458)
Q Consensus       413 ~~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~s~~~d~  448 (458)
                      |.++.....+.........+...  |+.-|+.-.+.|.
T Consensus       303 dpeta~ftv~p~pr~n~gn~ql~gr~ge~W~~e~gvd~  340 (353)
T COG4257         303 DPETARFTVLPIPRPNSGNIQLDGRPGELWFTEAGVDA  340 (353)
T ss_pred             CcccceEEEecCCCCCCCceeccCCCCceeecccCcce
Confidence            88776554443333333333333  3335665555553

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.56  E-value=0.0069  Score=57.12  Aligned_cols=198  Identities=14%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             CCcEEEeecccccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCC--CCCccceeeecccCCCCcceee
Q 012712          127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      .+.+++-+...... ....+++..+.+-.+.|-... ++. .  -.-|.+.+||+.  .|+....+..+.....     .
T Consensus       110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~-~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~-----g  180 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKG-R--RLVGELFVYDVDVLQGEIQPQLEVTPITPY-----G  180 (1283)
T ss_pred             hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHH-H--HHhhhhheeehHhhccccccceEEeecCcC-----C
Confidence            45677766544322 112256777888888875322 221 1  233678888875  4555444444333222     1


Q ss_pred             cceEEEEECCC--CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712          204 VNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND  281 (458)
Q Consensus       204 ~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (458)
                      ..+.-+.|.|-  +.-++..+-.++.+++.....-.                ..++..|...+..++|-..|-..     
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----------------~~l~rsHs~~~~d~a~~~~g~~~-----  239 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----------------RSLFRSHSQRVTDMAFFAEGVLK-----  239 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHH----------------HHHHHhcCCCcccHHHHhhchhh-----
Confidence            12334444442  24566667777788776665432                22333455666666554443111     


Q ss_pred             CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712          282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG  361 (458)
Q Consensus       282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~  361 (458)
                                                                                     +.+   .||||..++.+
T Consensus       240 ---------------------------------------------------------------l~~---lSpDGtv~a~a  253 (1283)
T KOG1916|consen  240 ---------------------------------------------------------------LAS---LSPDGTVFAWA  253 (1283)
T ss_pred             ---------------------------------------------------------------hee---eCCCCcEEEEe
Confidence                                                                           112   28999999999


Q ss_pred             cCCCeEEEEEec-CC----eEEEEeecCCc-eeeEEEecCCC---------CeEEEee-cCCcEEEecCCccccc
Q 012712          362 SDCGRIFIWKKK-GG----ELIRVIEADRH-VVNCIEPHPHS---------TVLASSG-IESDIKILTPNAADRA  420 (458)
Q Consensus       362 ~~dg~i~iwd~~-~~----~~~~~~~~~~~-~v~~~~~s~~~---------~~l~s~~-~d~~i~iw~~~~~~~~  420 (458)
                      ..||.++.|.+. +|    .++...+.|.+ +-.|.-++.+.         .++++++ .+..+++|.....+++
T Consensus       254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            999988888653 22    34445556653 32232233221         2344443 3567899987776665

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.52  E-value=1.4  Score=39.55  Aligned_cols=105  Identities=7%  Similarity=-0.036  Sum_probs=63.8

Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCe-----EEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-----LIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      .+.++.+ .+++..++++ ..|.+.. ....++     ....+..  ....+.++.|.+++..+++| ..|.+....-..
T Consensus       282 ~l~~v~~-~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G  357 (398)
T PLN00033        282 RIQNMGW-RADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGG  357 (398)
T ss_pred             ceeeeeE-cCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCC
Confidence            3778888 8898888766 4566543 333443     2222221  12358899999888766655 567776665333


Q ss_pred             cccccc---ccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712          417 ADRATL---PTNIEQVCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       417 ~~~~~~---~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      ......   ..-....+.+.|.++++..++ +.+|.|.-|
T Consensus       358 ~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~  396 (398)
T PLN00033        358 KSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY  396 (398)
T ss_pred             cceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence            222222   223456889999888887766 566776544

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.46  E-value=0.29  Score=43.01  Aligned_cols=160  Identities=10%  Similarity=0.005  Sum_probs=94.4

Q ss_pred             cccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          260 EQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ....+..+-..|||+.+..-+...+.++++.+......                                 +....-.+ 
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~r---------------------------------kl~~dspg-  264 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIR---------------------------------KLVDDSPG-  264 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchh---------------------------------hhhhcCCC-
Confidence            34677888899999999988888888888876321111                                 00000000 


Q ss_pred             cceeeee-EEEEecCCCcEEEEecCCCeEEEE-EecCC-e----EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          340 RNCVTVK-GVNFFGPKCEYVVSGSDCGRIFIW-KKKGG-E----LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       340 ~~~~~i~-~~~~~s~~~~~l~~~~~dg~i~iw-d~~~~-~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      +....|. .+.. -..|.-+..+..||-|.-| |...+ .    .++.++-...++..+.-..+.+-+++-+..|++.++
T Consensus       265 ~~~~~Vte~l~l-L~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f  343 (733)
T COG4590         265 DSRHQVTEQLYL-LSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSF  343 (733)
T ss_pred             chHHHHHHHHHH-HhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeee
Confidence            0000011 1111 2346667788889888777 44322 1    222233233344444444445567788889999988


Q ss_pred             cCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          413 TPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       413 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .....+..-...-.+.+.-+++||.+.+|++ -..|.|+++..
T Consensus       344 ~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~-e~~gki~~~~l  385 (733)
T COG4590         344 YSTSEKLLLFERAYQAPQLVAMSPNQAYLLS-EDQGKIRLAQL  385 (733)
T ss_pred             ecccCcceehhhhhcCcceeeeCcccchhee-ecCCceEEEEe
Confidence            7666655544444556778899999998876 33456777654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.43  E-value=1.8  Score=38.64  Aligned_cols=72  Identities=13%  Similarity=0.084  Sum_probs=38.4

Q ss_pred             cceeEEEEccCCCCeEEEEEc-----------CCC-cEEEeeccccc--ceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712          105 DNVFQAKIMPFTDDRSIVTCA-----------ADG-QVRHAQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCG  170 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~-----------~dg-~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  170 (458)
                      .....|+|.+  +|+++++-.           ..+ .|.+++-.++.  ......+.......+.+++.+++  +++ +.
T Consensus        14 ~~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~   88 (367)
T TIGR02604        14 RNPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-AT   88 (367)
T ss_pred             CCCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eC
Confidence            3456788888  888777643           223 67666544322  11112233333456789998877  444 44


Q ss_pred             CCCeEEEEeCC
Q 012712          171 EDGLVQHFDLR  181 (458)
Q Consensus       171 ~dg~i~iwd~~  181 (458)
                      .....++.|..
T Consensus        89 ~~~i~~~~d~~   99 (367)
T TIGR02604        89 PPDILFLRDKD   99 (367)
T ss_pred             CCeEEEEeCCC
Confidence            44333343543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.39  E-value=1.5  Score=37.47  Aligned_cols=191  Identities=13%  Similarity=0.188  Sum_probs=89.7

Q ss_pred             ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec--cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      ...++.|..+ ..+++| ..+ +.+...+.|+.-..+.  ..-.+....+....  ++..++.+ ..|.  +|....+..
T Consensus        63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~--~~~~~l~~-~~G~--iy~T~DgG~  134 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG--DGSAELAG-DRGA--IYRTTDGGK  134 (302)
T ss_dssp             EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE--TTEEEEEE-TT----EEEESSTTS
T ss_pred             eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC--CCcEEEEc-CCCc--EEEeCCCCC
Confidence            3567777643 344444 445 4444445554333321  12233444555544  55544444 3454  444444443


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                      -.......-...+..+.-++++ .+++++.......-||.-...-....+.          ....+..|.|.|+ +.+.+
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~----------~~~riq~~gf~~~-~~lw~  202 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRN----------SSRRIQSMGFSPD-GNLWM  202 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE------------SSS-EEEEEE-TT-S-EEE
T ss_pred             CeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccC----------ccceehhceecCC-CCEEE
Confidence            3333344555778888899999 6666666655556776543222111111          2347999999998 44444


Q ss_pred             EecCCCeEEEEecC-CCc-cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712          221 VAGSDEYTRLYDIR-KYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL  286 (458)
Q Consensus       221 ~~~~dg~i~i~d~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i  286 (458)
                       ....|.|+.=+.. ..+ ..+      +      ........-.+..++|.++++..++++.+.+..
T Consensus       203 -~~~Gg~~~~s~~~~~~~~w~~------~------~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  203 -LARGGQIQFSDDPDDGETWSE------P------IIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             -EETTTEEEEEE-TTEEEEE---------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred             -EeCCcEEEEccCCCCcccccc------c------cCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence             3488888887621 111 100      0      001111234588999999999999888885543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.39  E-value=2.1  Score=39.17  Aligned_cols=68  Identities=12%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec--C---CceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA--D---RHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~---~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      |..+.- .|+++ |..|+.+|-++. +.+.++....+..  |   ...+..+..-|+|++-+..+ + .|..|+-...
T Consensus       421 V~aive-d~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~-gva~~~sq~~  493 (671)
T COG3292         421 VSAIVE-DPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-S-GVAAWESQRR  493 (671)
T ss_pred             eeeeee-cCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-c-eeeeeccccc
Confidence            666665 88888 777888886654 3334333333321  1   23477888899998644332 2 3567765544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.36  E-value=1.6  Score=37.40  Aligned_cols=149  Identities=10%  Similarity=0.094  Sum_probs=76.6

Q ss_pred             cccceeEEEeCCCCcEEEEecCCcEE-EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          260 EQVGITGLAFSDQSELLVSYNDEFIY-LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                      ..+.+..+..+++|++++++..+.++ -|+.-..                                       .-.....
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---------------------------------------~w~~~~r  183 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---------------------------------------TWQPHNR  183 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---------------------------------------S-EEEE-
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCc---------------------------------------cceEEcc
Confidence            45678889999999999999988754 5664321                                       0111111


Q ss_pred             ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe-cCCeEEEE----eecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK-KGGELIRV----IEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      . ....+.++.| +|++.+.+.+ ..|.|+.=+. ...+....    +....-.+.+++|.+++...|+|+. |.+ +..
T Consensus       184 ~-~~~riq~~gf-~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S  258 (302)
T PF14870_consen  184 N-SSRRIQSMGF-SPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVS  258 (302)
T ss_dssp             --SSS-EEEEEE--TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEE
T ss_pred             C-ccceehhcee-cCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEe
Confidence            1 1124889998 9998876655 7888888772 12222111    1112224789999999888887664 443 334


Q ss_pred             CCccccc----ccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712          414 PNAADRA----TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       414 ~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      .+.++.-    ....-....+.+.|.++.+-++. +.+|.|.=|
T Consensus       259 ~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  259 TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             CCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence            4444322    12233446888998877655544 677776544

>PHA02790 Kelch-like protein; Provisional

Probab=95.32  E-value=2.5  Score=39.45  Aligned_cols=147  Identities=10%  Similarity=-0.049  Sum_probs=72.1

Q ss_pred             cCCCEEEEecCC--CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---cEEEeecccccceeeee
Q 012712           71 TDGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKL  145 (458)
Q Consensus        71 ~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~  145 (458)
                      -++...+.||.+  ..+..||..+++-...-.......-.+++. -  ++...+.||.++   .+..||..++.......
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~  393 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS  393 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence            367777778754  357788876553221110011111112222 2  788888887653   46678877665433211


Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      ........ +++ .-++ .+.+.|+   .+.+||.++.+-...-...   .     .......+.+   ++.+.+.|+.+
T Consensus       394 m~~~r~~~-~~~-~~~~-~IYv~GG---~~e~ydp~~~~W~~~~~m~---~-----~r~~~~~~v~---~~~IYviGG~~  456 (480)
T PHA02790        394 TYYPHYKS-CAL-VFGR-RLFLVGR---NAEFYCESSNTWTLIDDPI---Y-----PRDNPELIIV---DNKLLLIGGFY  456 (480)
T ss_pred             CCCccccc-eEE-EECC-EEEEECC---ceEEecCCCCcEeEcCCCC---C-----CccccEEEEE---CCEEEEECCcC
Confidence            22111111 222 2234 5666663   4678888766543221110   0     0111222222   25677777754


Q ss_pred             -----CeEEEEecCCCc
Q 012712          226 -----EYTRLYDIRKYK  237 (458)
Q Consensus       226 -----g~i~i~d~~~~~  237 (458)
                           ..+..||..+.+
T Consensus       457 ~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        457 RGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCcccceEEEEECCCCe
Confidence                 357777777654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=95.17  E-value=1.8  Score=36.99  Aligned_cols=198  Identities=16%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC----cEEE-EecCCCeEEEEecCCCccCCCcc---CC
Q 012712          174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA----NLFA-VAGSDEYTRLYDIRKYKWDGSTD---FG  245 (458)
Q Consensus       174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~-~~~~dg~i~i~d~~~~~~~~~~~---~~  245 (458)
                      .|.+||+.+.+.++.+..+.....    ....+..+.+....+    .+++ +=...+.|.++|+.+++.-....   ..
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~----~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~  110 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAP----PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP  110 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-----TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT
T ss_pred             EEEEEECCCCcEEEEEECChHHcc----cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce
Confidence            577889998888777776543322    234577777776322    2333 33344679999999876321110   00


Q ss_pred             CCC-CCcCCCccccccccceeEEEeCC---CCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          246 QPA-DYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       246 ~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                      .|. ..+......-.....+..++.+|   +++.|....-....+|.+.+......-.                      
T Consensus       111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~----------------------  168 (287)
T PF03022_consen  111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSL----------------------  168 (287)
T ss_dssp             S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT-----------------------
T ss_pred             eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccc----------------------
Confidence            000 00000000001123366677765   6667776654444455444321111100                      


Q ss_pred             CCCCCcc-cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC---eEEEEee-cC--CceeeEEEec
Q 012712          322 PSTANTD-VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVIE-AD--RHVVNCIEPH  394 (458)
Q Consensus       322 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~-~~--~~~v~~~~~s  394 (458)
                         .... .....+.+ +.... ....+++ +++|.++++--..+.|..|+....   +....+. ..  -..+.++.+.
T Consensus       169 ---~~~~~~~~~v~~l-G~k~~-~s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~  242 (287)
T PF03022_consen  169 ---SDAQALASQVQDL-GDKGS-QSDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID  242 (287)
T ss_dssp             ----HHH-HHHT-EEE-EE----SECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred             ---cccccccccceec-cccCC-CCceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence               0000 01111222 22111 2456666 899999999889999999998651   1222222 11  2467888898


Q ss_pred             C--CCCeEEEe
Q 012712          395 P--HSTVLASS  403 (458)
Q Consensus       395 ~--~~~~l~s~  403 (458)
                      +  +|.+.+..
T Consensus       243 ~~~~g~L~v~s  253 (287)
T PF03022_consen  243 PEGDGYLWVLS  253 (287)
T ss_dssp             T--TS-EEEEE
T ss_pred             cccCceEEEEE
Confidence            8  77665554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK10115 protease 2; Provisional

Probab=95.17  E-value=3.5  Score=40.37  Aligned_cols=115  Identities=10%  Similarity=0.008  Sum_probs=66.8

Q ss_pred             CceEEEEEecCCCEEEEecC-----CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------CcE
Q 012712           62 GCVNTVSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQV  130 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~i  130 (458)
                      -.+..+.+||||++|+.+..     ...|++-|+.+++.+.....+   .-..++|.+  |++.|+....+      ..|
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~--D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWAN--DSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence            35677899999998886532     247889999888644333222   115699999  88776655432      357


Q ss_pred             EEeecccccceeeeeccccccceE-EEEEcCCCCeEEEEec--CCCeEEEEeCC
Q 012712          131 RHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCG--EDGLVQHFDLR  181 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~--~dg~i~iwd~~  181 (458)
                      ..+++.++.......+........ .+..+.++..+++...  .++.+.+++..
T Consensus       202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            777887763222222332222222 3333446644444333  24578888853

>PRK13684 Ycf48-like protein; Provisional

Probab=95.09  E-value=2.2  Score=37.52  Aligned_cols=150  Identities=8%  Similarity=-0.045  Sum_probs=85.9

Q ss_pred             ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712          261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR  340 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (458)
                      ...+..+.+.|++.+++++..+.++.- .+.+                                     ...-...... 
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~g-------------------------------------g~tW~~~~~~-  212 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPG-------------------------------------QTAWTPHQRN-  212 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCC-------------------------------------CCeEEEeeCC-
Confidence            457889999999988888887765432 1111                                     0000111111 


Q ss_pred             ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec----CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      ....+.++.+ .++++.+++| ..|.+++=..+.++.-.....    ....+.++++.|++..++++ .+|.+. .....
T Consensus       213 ~~~~l~~i~~-~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~  288 (334)
T PRK13684        213 SSRRLQSMGF-QPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG  288 (334)
T ss_pred             CcccceeeeE-cCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC
Confidence            1124778887 8998877765 467665433344433222221    12357889999988766544 566554 34444


Q ss_pred             cccc-cc---ccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          417 ADRA-TL---PTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       417 ~~~~-~~---~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ++.- ..   ..-......+.|..+++.++. +..|.|.-|+
T Consensus       289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~  329 (334)
T PRK13684        289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV  329 (334)
T ss_pred             CCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence            4332 22   122235788888877777654 6677877665

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=3.4  Score=39.32  Aligned_cols=94  Identities=7%  Similarity=0.080  Sum_probs=58.6

Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc
Q 012712          345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP  423 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~  423 (458)
                      +..+.. ||+.++|+-=...|.|.+-+.+..+.+.++... ..+...++|.-+.  -++.+.+..+.+.........-..
T Consensus       219 ~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~V~f~y  295 (829)
T KOG2280|consen  219 VVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND--AVVLSWEVNLMLVGPPGDSVQFYY  295 (829)
T ss_pred             EEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC--ceEEEEeeeEEEEcCCCCcccccc
Confidence            667777 999999999999999999988777777666522 2234477786544  233344555666555444433332


Q ss_pred             cccccEEEEEEecCCcEEEee
Q 012712          424 TNIEQVCFSIYSADYWWSKSQ  444 (458)
Q Consensus       424 ~~~~~v~~~~~s~d~~~l~s~  444 (458)
                      .+.. +  +.-=+||-.+++.
T Consensus       296 d~t~-~--l~~E~DGVRI~t~  313 (829)
T KOG2280|consen  296 DETA-I--LSAEVDGVRIITS  313 (829)
T ss_pred             CCCc-e--eeeccCeeEEecc
Confidence            2222 1  5556677666653

>PRK13684 Ycf48-like protein; Provisional

Probab=94.93  E-value=2.4  Score=37.24  Aligned_cols=153  Identities=12%  Similarity=0.077  Sum_probs=81.6

Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEE-EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRL-YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF  283 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  283 (458)
                      .+.++.+.|+ +.+++++ ..|.+.. +|-.....               ..........++.+.+.++++.++.+..+.
T Consensus       174 ~~~~i~~~~~-g~~v~~g-~~G~i~~s~~~gg~tW---------------~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~  236 (334)
T PRK13684        174 VVRNLRRSPD-GKYVAVS-SRGNFYSTWEPGQTAW---------------TPHQRNSSRRLQSMGFQPDGNLWMLARGGQ  236 (334)
T ss_pred             eEEEEEECCC-CeEEEEe-CCceEEEEcCCCCCeE---------------EEeeCCCcccceeeeEcCCCCEEEEecCCE
Confidence            5788999997 5555544 4554442 22111111               011122346788999999999888877665


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~  363 (458)
                      +++=..+.+..-..                                   .. .........+.++.+ .+++..+++| .
T Consensus       237 ~~~~s~d~G~sW~~-----------------------------------~~-~~~~~~~~~l~~v~~-~~~~~~~~~G-~  278 (334)
T PRK13684        237 IRFNDPDDLESWSK-----------------------------------PI-IPEITNGYGYLDLAY-RTPGEIWAGG-G  278 (334)
T ss_pred             EEEccCCCCCcccc-----------------------------------cc-CCccccccceeeEEE-cCCCCEEEEc-C
Confidence            54222222211100                                   00 000001113677777 8887766555 5


Q ss_pred             CCeEEEEEecCCeEEEEee---cCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          364 CGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      +|.+.. ....++.-....   .-....+.+.|..+++.+++ +..|.|.-|+-
T Consensus       279 ~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~  330 (334)
T PRK13684        279 NGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG  330 (334)
T ss_pred             CCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence            676553 444444433332   12235777888777776664 55788877764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.84  E-value=2.9  Score=37.67  Aligned_cols=155  Identities=9%  Similarity=0.084  Sum_probs=81.3

Q ss_pred             CCeEEEEEcCCCcEEEeeccccccee--eeeccccccceEEEEEc---CCCCeEEEEecCCCeEEEEeCCCCCcc----c
Q 012712          117 DDRSIVTCAADGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIE---PGSPHVFYTCGEDGLVQHFDLRTGAAT----E  187 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~----~  187 (458)
                      +...|++|+..|.++|++....+...  ...-..-..+|..+..-   +......++.-.-..+.+|.+......    .
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            45789999999999999986544211  11011234577776653   222222333345567888877322111    0


Q ss_pred             eeeecccCCCCcceeecceEEEEECCC----CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712          188 LFTCRPIDDRRNYMTVVNLNAIAIDPR----NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG  263 (458)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      .+.....   ..|.-......++.-|-    +..++.+-+.||.+.+|+-+.......               ... .--
T Consensus       116 ~~~L~~~---yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~---------------lp~-~ll  176 (418)
T PF14727_consen  116 QYQLELI---YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF---------------LPD-FLL  176 (418)
T ss_pred             EEEEEEE---EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE---------------cCC-CCC
Confidence            0000000   01111112233333332    246889999999999999876432111               000 111


Q ss_pred             eeEEEeCCCCcEEEEecCC-cEEEEEcc
Q 012712          264 ITGLAFSDQSELLVSYNDE-FIYLFTQD  290 (458)
Q Consensus       264 i~~~~~~~~~~~l~~~~~~-~i~i~~~~  290 (458)
                      ...+.|.+....+++++.. .+.-|...
T Consensus       177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  177 PGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CcCeEEeecCCEEEEecCceeEEEecHH
Confidence            2346677777677776654 78877754

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=1  Score=39.80  Aligned_cols=95  Identities=7%  Similarity=-0.015  Sum_probs=67.0

Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe----ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc--c
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI----EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA--A  417 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~--~  417 (458)
                      .|.++.| |+|.+.||.--.+.+|.+++....+....+    +..+..|....|+.. .-+|... +.-+.+|.+..  .
T Consensus        68 ~I~SIkF-SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~pekr  144 (657)
T KOG2377|consen   68 EIKSIKF-SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVLPEKR  144 (657)
T ss_pred             ceeEEEe-ccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEchhhh
Confidence            4899998 999999999999999999998443333222    233456889999866 4455444 33456665543  3


Q ss_pred             cccccccccccEEEEEEecCCcEE
Q 012712          418 DRATLPTNIEQVCFSIYSADYWWS  441 (458)
Q Consensus       418 ~~~~~~~~~~~v~~~~~s~d~~~l  441 (458)
                      ....+..+.-.|....|.|+-..+
T Consensus       145 slRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  145 SLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             hhhhhhhcccCccEEEEccccceE
Confidence            445667788889999999998544

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=94.71  E-value=3.4  Score=37.94  Aligned_cols=153  Identities=14%  Similarity=0.084  Sum_probs=80.7

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      ..+|.++.+...|. |-.|+.|| +..||..+++.++.-......+|..+.-+-  . ..|..|+.+| +.+.+.+..+.
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--q-g~LWVGTdqG-v~~~e~~G~~~  237 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--Q-GRLWVGTDQG-VYLQEAEGWRA  237 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--c-CcEEEEeccc-eEEEchhhccc
Confidence            45677888877775 55677877 777888877765554333346677666654  3 4566666655 56665544211


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                       ......-....|..+.-..+|  .+-.|+..|..+.--.+.+-.....+        .+.....|.++..+.++  -+.
T Consensus       238 -sn~~~~lp~~~I~ll~qD~qG--~lWiGTenGl~r~~l~rq~Lq~~~~~--------~~l~~S~vnsL~~D~dG--sLW  304 (671)
T COG3292         238 -SNWGPMLPSGNILLLVQDAQG--ELWIGTENGLWRTRLPRQGLQIPLSK--------MHLGVSTVNSLWLDTDG--SLW  304 (671)
T ss_pred             -cccCCCCcchheeeeecccCC--CEEEeecccceeEecCCCCccccccc--------cCCccccccceeeccCC--CEe
Confidence             111111223445555444455  25566666644332222221111111        11133356666666653  566


Q ss_pred             EecCCCeEEEEe
Q 012712          221 VAGSDEYTRLYD  232 (458)
Q Consensus       221 ~~~~dg~i~i~d  232 (458)
                      +++.+|.+++-+
T Consensus       305 v~t~~giv~~~~  316 (671)
T COG3292         305 VGTYGGIVRYLT  316 (671)
T ss_pred             eeccCceEEEec
Confidence            777777666543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.63  E-value=2.1  Score=35.24  Aligned_cols=200  Identities=13%  Similarity=0.108  Sum_probs=116.9

Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      .-..++-.||| ..-+++...+.|--.|..+++....-. .         .......+...||++.++.-.+.  -|.-.
T Consensus        63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypL-g---------~Ga~Phgiv~gpdg~~Witd~~~--aI~R~  129 (353)
T COG4257          63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPL-G---------SGASPHGIVVGPDGSAWITDTGL--AIGRL  129 (353)
T ss_pred             CccccccCCCC-ceEEecCccccceecCCCCCceEEEec-C---------CCCCCceEEECCCCCeeEecCcc--eeEEe
Confidence            34567788888 677888888888888888887543221 1         22245677788886555543322  46666


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      |.++.+....          ..  .............|.+.|.+..++..+.---.|..                     
T Consensus       130 dpkt~evt~f----------~l--p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa---------------------  176 (353)
T COG4257         130 DPKTLEVTRF----------PL--PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPA---------------------  176 (353)
T ss_pred             cCcccceEEe----------ec--ccccCCCcccceeeCCCccEEEeeccccceecCcc---------------------
Confidence            6655542211          11  12223456788899999998888764421111111                     


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee---cCCcee
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVV  388 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v  388 (458)
                                        ...++.+...... .-..++. .|||..-++.-.+..|-..|..++.. ..+.   .....-
T Consensus       177 ------------------~~~i~vfpaPqG~-gpyGi~a-tpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gs  235 (353)
T COG4257         177 ------------------RNVISVFPAPQGG-GPYGICA-TPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGS  235 (353)
T ss_pred             ------------------cCceeeeccCCCC-CCcceEE-CCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccc
Confidence                              1122333322222 2356666 89998877766777787777766622 2222   111223


Q ss_pred             eEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          389 NCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       389 ~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      ..+--+|.|+.-+|....+.+.-+|.....
T Consensus       236 Rriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         236 RRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             cccccCccCcEEEeccCCceeeEeCccccc
Confidence            445556788888887777888888877553

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.62  E-value=2.8  Score=40.85  Aligned_cols=94  Identities=7%  Similarity=0.064  Sum_probs=56.2

Q ss_pred             ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC-CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG-PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...|..+.++|+|++++..+...|.+..+...-. ...+...........                    ...-..+...
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt--------------------~~v~~~~~~~  143 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRT--------------------VPVDERFFTS  143 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEE--------------------EEechhhccC
Confidence            4579999999999999999888888877753210 000100000000000                    0000111111


Q ss_pred             cceeeeeEEEEecCC---CcEEEEecCCCeEEEEEecCC
Q 012712          340 RNCVTVKGVNFFGPK---CEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~  375 (458)
                      .....|..+.| +|.   +..|+.-..|+++|+||+...
T Consensus       144 ~~~~~i~qv~W-hP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRW-HPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEE-cCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            22235889998 776   578888899999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=94.60  E-value=3.9  Score=38.14  Aligned_cols=147  Identities=10%  Similarity=-0.024  Sum_probs=71.8

Q ss_pred             CCCEEEEecCC-----CeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCC--CcEEEeecccccceee
Q 012712           72 DGDILISGSDD-----RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD--GQVRHAQILERGGVET  143 (458)
Q Consensus        72 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d--g~i~vw~~~~~~~~~~  143 (458)
                      ++.+++.||.+     ..+..||..++.-...-. ...... .+++. -  ++...+.||.+  ..+..||..+++....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~-~--~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP-A--NNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE-E--CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            45566777754     356778877654322110 111111 12222 3  77888888764  3577788765544332


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCC---eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                      ..+.........+.  -++ ++.+.|+.++   .+..||.++.+-...-...   .     .......+++   ++.+.+
T Consensus       347 ~~l~~~r~~~~~~~--~~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~---~-----~r~~~~~~~~---~~~IYv  412 (480)
T PHA02790        347 PSLLKPRCNPAVAS--INN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY---Y-----PHYKSCALVF---GRRLFL  412 (480)
T ss_pred             CCCCCCCcccEEEE--ECC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCC---C-----ccccceEEEE---CCEEEE
Confidence            22221111112222  234 6777777653   4677887765432211100   0     0001112222   245666


Q ss_pred             EecCCCeEEEEecCCCccC
Q 012712          221 VAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       221 ~~~~dg~i~i~d~~~~~~~  239 (458)
                      .|+   .+.+||.++.+..
T Consensus       413 ~GG---~~e~ydp~~~~W~  428 (480)
T PHA02790        413 VGR---NAEFYCESSNTWT  428 (480)
T ss_pred             ECC---ceEEecCCCCcEe
Confidence            663   5778998877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.59  E-value=0.25  Score=40.05  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc-------ccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-------DEQVGITGLAFSDQSELLVSYNDEFIYLFT  288 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~  288 (458)
                      +.++++-+.+|.+++||+.+.+......        ....+..       .....|..+.++.+|.-+++-+++..+.|+
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~--------Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPV--------SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCc--------cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            5689999999999999999987543320        0011111       345788999999999999999989899998


Q ss_pred             ccCC
Q 012712          289 QDMG  292 (458)
Q Consensus       289 ~~~~  292 (458)
                      .+..
T Consensus        94 ~~L~   97 (219)
T PF07569_consen   94 PDLG   97 (219)
T ss_pred             cccc
Confidence            7653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.52  E-value=0.6  Score=43.93  Aligned_cols=95  Identities=15%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712          104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG  183 (458)
Q Consensus       104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  183 (458)
                      ..-++++.-+|  .+..++.++.||.|++++........   +-....+-..+.|...|   |++...|..+.-|. +.|
T Consensus        14 ~e~~~aiqshp--~~~s~v~~~~d~si~lfn~~~r~qsk---i~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~-~dg   84 (1636)
T KOG3616|consen   14 DEFTTAIQSHP--GGQSFVLAHQDGSIILFNFIPRRQSK---ICEEAKPKENLVFTNHG---LVTATSDRRALAWK-EDG   84 (1636)
T ss_pred             cceeeeeeecC--CCceEEEEecCCcEEEEeecccchhh---hhhhcCCccceeeeccc---eEEEeccchhheee-ccC
Confidence            34567788888  99999999999999999986554322   11122344556676655   67778888888885 334


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECCC
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      -..+.+.....       ......++...|.
T Consensus        85 vvqqqfdyndq-------sekefss~~cdpt  108 (1636)
T KOG3616|consen   85 VVQQQFDYNDQ-------SEKEFSSILCDPT  108 (1636)
T ss_pred             cchhhccccch-------hhhhccceecCch
Confidence            33333332211       2234556666665

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=94.43  E-value=5.8  Score=39.36  Aligned_cols=66  Identities=12%  Similarity=-0.034  Sum_probs=49.2

Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe----ec---------------CCceeeEEEecCCCCeEEEee
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI----EA---------------DRHVVNCIEPHPHSTVLASSG  404 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~---------------~~~~v~~~~~s~~~~~l~s~~  404 (458)
                      .|.++.. ..-+.+++..-.||+|.++|..+.+.+...    ..               +...+..++|||.+..++.-.
T Consensus       261 ~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  261 RVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             eEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            4777776 667779999999999999998877555333    10               111344588999999999999


Q ss_pred             cCCcEE
Q 012712          405 IESDIK  410 (458)
Q Consensus       405 ~d~~i~  410 (458)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            999866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.36  E-value=0.35  Score=39.19  Aligned_cols=70  Identities=10%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             cCCCcEEEEecCCCeEEEEEecCCeEEEEe-------e-------cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVI-------E-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      ..++++|++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-|++-+ +|..+.|+.+-+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            567889999999999999999988765321       1       2445688899999998887765 578899988765


Q ss_pred             ccccc
Q 012712          418 DRATL  422 (458)
Q Consensus       418 ~~~~~  422 (458)
                      ....+
T Consensus        98 ~W~~v  102 (219)
T PF07569_consen   98 CWIRV  102 (219)
T ss_pred             eeEEe
Confidence            44433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.28  E-value=1.4  Score=31.84  Aligned_cols=101  Identities=10%  Similarity=0.075  Sum_probs=64.9

Q ss_pred             cCCCcEEEEecCCCeEEEEEecCC--------eEEEEeecCCceeeEEEecC-----CCCeEEEeecCCcEEEecCCccc
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKGG--------ELIRVIEADRHVVNCIEPHP-----HSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~-----~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      +....-|++++.-|+|.|++....        ..++.|. -...|++|+-.+     +...|+.|+ ...|..||+....
T Consensus         7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~   84 (136)
T PF14781_consen    7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS   84 (136)
T ss_pred             CCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence            555667888888889999886532        2344444 234577775433     234566555 6789999999987


Q ss_pred             ccccccccccEEEEEEecC----CcEEEeeecCCceEEEEE
Q 012712          419 RATLPTNIEQVCFSIYSAD----YWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       419 ~~~~~~~~~~v~~~~~s~d----~~~l~s~~~d~~i~~w~~  455 (458)
                      -.-...-...|.++.+-.-    ..++ ..+.+++|.=||+
T Consensus        85 d~Fyke~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~  124 (136)
T PF14781_consen   85 DLFYKEVPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDY  124 (136)
T ss_pred             hhhhhhCccceeEEEEEecCCCCCcEE-EECceEEEEEeCC
Confidence            7766666777888877432    2444 4455566665553

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.26  E-value=0.45  Score=41.90  Aligned_cols=168  Identities=17%  Similarity=0.129  Sum_probs=96.0

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc----ceE-EEEEcCCCCeEEEEecCCCeE
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG----RAH-KLAIEPGSPHVFYTCGEDGLV  175 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~s~~~dg~i  175 (458)
                      ......+..+-..|  |++.+..-+. .++.++++.+......+......+    .|+ ++..-..+ .-++.+..||-|
T Consensus       217 ~~~~~~v~qllL~P--dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~v  292 (733)
T COG4590         217 SVPFSDVSQLLLTP--DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG-FSLLVVHEDGLV  292 (733)
T ss_pred             CCCccchHhhEECC--CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc-eeEEEEcCCCce
Confidence            44556788888999  9999887765 678888886644322221221111    122 11222333 567778888888


Q ss_pred             EEE-eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          176 QHF-DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       176 ~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      .-| |.+.+.. ..+........    ...++..+.-.. +.+-+++-+.+|++..+.....+..               
T Consensus       293 sQWFdvr~~~~-p~l~h~R~f~l----~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l---------------  351 (733)
T COG4590         293 SQWFDVRRDGQ-PHLNHIRNFKL----APAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL---------------  351 (733)
T ss_pred             eeeeeeecCCC-Ccceeeecccc----Ccccceeecccc-ccceEEEEcCCCceeeeecccCcce---------------
Confidence            766 5554332 21211100000    111222222222 2456777788888887765544321               


Q ss_pred             ccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC
Q 012712          255 NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG  294 (458)
Q Consensus       255 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~  294 (458)
                       +...--..+.-+++||.+.++++-..++++++.+++...
T Consensus       352 -L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         352 -LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             -ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence             111112356678999999999999999999999887653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.09  E-value=6.7  Score=38.77  Aligned_cols=158  Identities=16%  Similarity=0.086  Sum_probs=88.8

Q ss_pred             ccccccccccccccceEEeeeeeEeecCCCce------EEEEEec--CCCEEEEecCCCeEEEEECCCcceeeeeccCCC
Q 012712           33 STRNFALRRRASEDLVLRLGIYAKLDKHRGCV------NTVSFNT--DGDILISGSDDRRVILWDWKTERVKLSFHSGHN  104 (458)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v------~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  104 (458)
                      -.++++++..-..+.+.++++.-+++.....-      .....+|  .+..|..++.++.|.-.|..+|+.+.++.....
T Consensus       146 ~~~RySpL~qIn~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~  225 (764)
T TIGR03074       146 AGQRYSPLDQINPDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLK  225 (764)
T ss_pred             cccccCcccccCcccccCceEEEEEECCCccccccccccccccCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCC
Confidence            33466666666666666776666664221000      1222333  255677788889999999999998877632111


Q ss_pred             c-------ceeEEEEcc--------------CCCCeEEEEEcCCCcEEEeecccccceeeeeccc----------cccce
Q 012712          105 D-------NVFQAKIMP--------------FTDDRSIVTCAADGQVRHAQILERGGVETKLLGK----------HQGRA  153 (458)
Q Consensus       105 ~-------~i~~~~~~~--------------~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~----------~~~~v  153 (458)
                      .       ....+.+..              ...+..++.++.|+.+.-.|..+++.+......+          ....-
T Consensus       226 ~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~  305 (764)
T TIGR03074       226 TEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGY  305 (764)
T ss_pred             cccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcc
Confidence            0       012233321              1134478888889999999998888765411100          00000


Q ss_pred             EEEEEcC--CCCeEEEEecC----------CCeEEEEeCCCCCccceeee
Q 012712          154 HKLAIEP--GSPHVFYTCGE----------DGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       154 ~~~~~~~--~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~  191 (458)
                      ..+.-.|  .+ ..++.++.          +|.|+-+|.++++....+..
T Consensus       306 ~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       306 YYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP  354 (764)
T ss_pred             cccccCCEEEC-CEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence            0011111  02 24555532          68899999999998877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.93  E-value=1.2  Score=34.72  Aligned_cols=30  Identities=17%  Similarity=0.310  Sum_probs=24.3

Q ss_pred             eeeEEEEecCCC------cEEEEecCCCeEEEEEecC
Q 012712          344 TVKGVNFFGPKC------EYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       344 ~i~~~~~~s~~~------~~l~~~~~dg~i~iwd~~~  374 (458)
                      .+.+++| ||-|      -+|++.+.+|.|.||....
T Consensus        87 ~vv~~aW-SP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAW-SPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEE-CCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            4889998 9854      4788889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.73  E-value=2.9  Score=33.30  Aligned_cols=118  Identities=15%  Similarity=0.066  Sum_probs=65.2

Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC------eEEEE-ecCCC
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE------YTRLY-DIRKY  236 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------~i~i~-d~~~~  236 (458)
                      .+|++ ...+.|.+|++.+..........         .-+.|..+.++.. |+++++--.+.      .+|+| +.+..
T Consensus        30 ~Lfva-~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~-GDYlvTlE~k~~~~~~~fvR~Y~NWr~~   98 (215)
T PF14761_consen   30 ALFVA-ASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEA-GDYLVTLEEKNKRSPVDFVRAYFNWRSQ   98 (215)
T ss_pred             eEEEE-cCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccc-cceEEEEEeecCCccceEEEEEEEhhhh
Confidence            44443 56678999999844443333222         3357899999997 78998854322      55665 23222


Q ss_pred             c----cCCCccCCCCCC-------CcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712          237 K----WDGSTDFGQPAD-------YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG  292 (458)
Q Consensus       237 ~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~  292 (458)
                      +    .....-.+.+..       ......+.-+-..++.+++-.|-.--|+.|+++.+.+|.+...
T Consensus        99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~  165 (215)
T PF14761_consen   99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ  165 (215)
T ss_pred             cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence            1    110000010000       0001111112245677888888766677888999999987653

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.71  E-value=4.5  Score=35.47  Aligned_cols=70  Identities=17%  Similarity=0.281  Sum_probs=40.9

Q ss_pred             eeEEEEecCCCcEEEEecC-----CC---------eEEEE--EecC-CeEEEEe----ec-----CCceeeEEEecCCCC
Q 012712          345 VKGVNFFGPKCEYVVSGSD-----CG---------RIFIW--KKKG-GELIRVI----EA-----DRHVVNCIEPHPHST  398 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~~~-----dg---------~i~iw--d~~~-~~~~~~~----~~-----~~~~v~~~~~s~~~~  398 (458)
                      ..++++ +|+|+.|+++.+     |+         .++++  |..+ ++....+    ..     ....|..+.+-++++
T Consensus       149 ~E~la~-~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~  227 (326)
T PF13449_consen  149 FEGLAV-SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR  227 (326)
T ss_pred             eEEEEE-CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence            788998 999996665432     22         14454  4443 3233222    21     345688999999999


Q ss_pred             eEEEe-----ecCCcEEEecCC
Q 012712          399 VLASS-----GIESDIKILTPN  415 (458)
Q Consensus       399 ~l~s~-----~~d~~i~iw~~~  415 (458)
                      +|+-=     +....++|+.+.
T Consensus       228 lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  228 LLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             EEEEEccCCCCccceEEEEEEE
Confidence            77642     134456666443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.66  E-value=0.48  Score=26.24  Aligned_cols=40  Identities=8%  Similarity=0.060  Sum_probs=28.3

Q ss_pred             CCCcEEEEec-CCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712          353 PKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIEP  393 (458)
Q Consensus       353 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  393 (458)
                      |++++|+++. .+++|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5677666654 5789999999999888887653 33445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.61  E-value=7  Score=37.37  Aligned_cols=180  Identities=11%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec
Q 012712           21 LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH  100 (458)
Q Consensus        21 ~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  100 (458)
                      .|+|+++. |+++.+                     +.-..+.+-.+.|+.+.. |++...+|++.+|++.. +.+....
T Consensus        65 ~I~If~~s-G~lL~~---------------------~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~s  120 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGR---------------------ILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNS  120 (829)
T ss_pred             eEEEEecc-ccchHH---------------------HHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccc
Confidence            37788877 776654                     222233788999997665 66678999999999863 3222211


Q ss_pred             ---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC--eEEEEec-CCCe
Q 012712          101 ---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP--HVFYTCG-EDGL  174 (458)
Q Consensus       101 ---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~-~dg~  174 (458)
                         ......|..+.+..  +|-.+.+.+. ..+.+-+............+...-+-.|-...+++.  ..++-.. ..+ 
T Consensus       121 vg~e~~~~~I~ec~~f~--~GVavlt~~g-~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-  196 (829)
T KOG2280|consen  121 VGFESQMSDIVECRFFH--NGVAVLTVSG-QVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-  196 (829)
T ss_pred             cccccccCceeEEEEec--CceEEEecCC-cEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-
Confidence               11233455666655  6644444442 223333333222111111111111212222222221  1111111 111 


Q ss_pred             EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      ..+....... .+......        ....+..+..||. ..+|+--...|.|.+-+....+.
T Consensus       197 ~~~~q~~~~~-~q~~~~~~--------~~~~~~ki~VS~n-~~~laLyt~~G~i~~vs~D~~~~  250 (829)
T KOG2280|consen  197 LHICQVEESR-VQLHALSW--------PNSSVVKISVSPN-RRFLALYTETGKIWVVSIDLSQI  250 (829)
T ss_pred             hcccceeccc-ccccccCC--------CCceEEEEEEcCC-cceEEEEecCCcEEEEecchhhh
Confidence            0111111111 11111000        1235778899996 68999889999999988776553

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.35  E-value=4.2  Score=34.02  Aligned_cols=156  Identities=12%  Similarity=0.080  Sum_probs=92.7

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCC-cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      +.+..+.++  +++...+..+.-++|.|+.+.......-.-.. +--+++..    .|++...+..|.-+.+.|+.+...
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v----sGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV----SGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe----cCCEEEEeeccCcEEEEECCCCCC
Confidence            445566666  45666666777799999987765433311111 22233333    688888888677778899987765


Q ss_pred             eeee-eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          141 VETK-LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       141 ~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      .... ...........++.+-   +..+.+..|+-+.+.|+........+....        ....+.++..+++ ..++
T Consensus       161 P~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n--------~g~g~~sv~vsdn-r~y~  228 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--------TGPGTYSVSVSDN-RAYL  228 (370)
T ss_pred             ceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEe--------cCCceEEEEecCC-eeEE
Confidence            4321 1222333345666664   446677788889999998776544443221        1125778888875 3444


Q ss_pred             EEecCCCeEEEEecCCCc
Q 012712          220 AVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~  237 (458)
                      +..  +.-+.+-|....+
T Consensus       229 vvy--~egvlivd~s~~s  244 (370)
T COG5276         229 VVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             EEc--ccceEEEecCCCC
Confidence            433  3336677776543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.30  E-value=5.3  Score=35.03  Aligned_cols=164  Identities=18%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             CcceeEEEEccCCCCeEEEEEcCCCc------EEEeecccc----cce---eeeeccccc--------cceEEEEEcCCC
Q 012712          104 NDNVFQAKIMPFTDDRSIVTCAADGQ------VRHAQILER----GGV---ETKLLGKHQ--------GRAHKLAIEPGS  162 (458)
Q Consensus       104 ~~~i~~~~~~~~~~~~~l~s~~~dg~------i~vw~~~~~----~~~---~~~~~~~~~--------~~v~~~~~~~~~  162 (458)
                      -+.+..+.+.|  ++..+++.+.+|.      +...++...    ..+   ....+....        ....+|++.+++
T Consensus        19 ~GGlSgl~~~~--~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g   96 (326)
T PF13449_consen   19 FGGLSGLDYDP--DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG   96 (326)
T ss_pred             cCcEeeEEEeC--CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence            35677888886  5555666666666      544444331    000   001111111        144578886666


Q ss_pred             CeEEEEecCC------CeEEEEeCCCCCccceeeecccCCC-----CcceeecceEEEEECCCCCcEEEEecCC-----C
Q 012712          163 PHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAGSD-----E  226 (458)
Q Consensus       163 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g  226 (458)
                       .++++.-.+      ..|..++.. ++....+..+.....     .+......+.+|+++|+ +..|+++.+.     +
T Consensus        97 -~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d-G~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   97 -SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD-GRTLFAAMESPLKQDG  173 (326)
T ss_pred             -CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCC-CCEEEEEECccccCCC
Confidence             667776666      788888877 666555543322100     23335567899999998 5655544322     1


Q ss_pred             ---------eEEE--EecCCCc-cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712          227 ---------YTRL--YDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS  278 (458)
Q Consensus       227 ---------~i~i--~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (458)
                               .+++  ||..+.. ....+.+...      ..........+..+.+.+++++|+.
T Consensus       174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld------~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLD------PPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccccCceEEEEEecCCCCCccceEEEEeCC------ccccccCCCCceeEEEECCCcEEEE
Confidence                     1444  4444311 1111111000      0000003567888999999988775

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=93.18  E-value=9.8  Score=37.82  Aligned_cols=81  Identities=20%  Similarity=0.047  Sum_probs=48.3

Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc-cCCCCCC---CcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST-DFGQPAD---YFCPPNLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                      ..|.++....- +..++....||+|.++|..+.+..... ..+.+..   ......+.-.....+..++|||.+..++.-
T Consensus       260 ~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  260 KRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            45667776665 568899999999999999988765544 1111111   100011111112255678999998877766


Q ss_pred             c-CCcEE
Q 012712          280 N-DEFIY  285 (458)
Q Consensus       280 ~-~~~i~  285 (458)
                      . ++.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            6 45543

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.12  E-value=10  Score=37.86  Aligned_cols=88  Identities=14%  Similarity=0.202  Sum_probs=57.0

Q ss_pred             ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc-c-cccccceeEEEeCCCCcEEEEec
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-I-GDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      ..+...++|+|.+...||+....|...||++..........+...... . ..+ . ......-..+.|.++-..|+.++
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~-~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~  222 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNI-S-GSIIFDPEELSNWKRILWVSDSNRLLVCN  222 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCC-C-ccccCCCcccCcceeeEecCCCCEEEEEc
Confidence            335678999998788999999999999999932221111000000000 0 011 0 11123455888999988899999


Q ss_pred             CCcEEEEEccCC
Q 012712          281 DEFIYLFTQDMG  292 (458)
Q Consensus       281 ~~~i~i~~~~~~  292 (458)
                      ...+.++|+.+.
T Consensus       223 r~~l~~~d~~~~  234 (765)
T PF10214_consen  223 RSKLMLIDFESN  234 (765)
T ss_pred             CCceEEEECCCC
Confidence            999999999874

These proteins are found in fungi.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.95  E-value=2  Score=38.76  Aligned_cols=61  Identities=10%  Similarity=0.188  Sum_probs=44.2

Q ss_pred             CCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       353 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      ....|+|.|+..|-|++||.-.-.....+.+-...|..+..+.+|+++++.+. ..+.+-|+
T Consensus       571 TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         571 TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            34559999999999999997444444456667778999999999998766553 34545444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.80  E-value=0.19  Score=48.05  Aligned_cols=121  Identities=15%  Similarity=0.077  Sum_probs=68.7

Q ss_pred             CceEEEEEec---CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEE-----------EccCCCCeEEEEEcCC
Q 012712           62 GCVNTVSFNT---DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAK-----------IMPFTDDRSIVTCAAD  127 (458)
Q Consensus        62 ~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~l~s~~~d  127 (458)
                      ..+.-+.|.|   +.-++..+-.++.|++-...+...  .+..+|...+..++           .+|  ||..++.++.|
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~d  256 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSP--DGTVFAWAISD  256 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCC--CCcEEEEeecC
Confidence            4445555554   556677777788888877654433  22345776665554           477  99999999999


Q ss_pred             CcEEEeecccccc-e--eeeeccccc-cceEEEEEcCCC-------C-eEEEEec-CCCeEEEEeCCCCCcc
Q 012712          128 GQVRHAQILERGG-V--ETKLLGKHQ-GRAHKLAIEPGS-------P-HVFYTCG-EDGLVQHFDLRTGAAT  186 (458)
Q Consensus       128 g~i~vw~~~~~~~-~--~~~~~~~~~-~~v~~~~~~~~~-------~-~~l~s~~-~dg~i~iwd~~~~~~~  186 (458)
                      |.++.|.+--... .  ..+..+.|+ .+-.|.-++.+.       . .++++++ .+..+++|.....++.
T Consensus       257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            9999887642211 1  112244455 222222233221       0 1233333 3456888876655554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.51  E-value=0.47  Score=25.84  Aligned_cols=30  Identities=13%  Similarity=-0.013  Sum_probs=19.6

Q ss_pred             cccccEEEEEEecCCcEEEee-ecC--CceEEE
Q 012712          424 TNIEQVCFSIYSADYWWSKSQ-NFS--CSILLF  453 (458)
Q Consensus       424 ~~~~~v~~~~~s~d~~~l~s~-~~d--~~i~~w  453 (458)
                      .....-...+|||||++|+.. ..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344467789999999887754 444  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.00  E-value=0.03  Score=49.32  Aligned_cols=144  Identities=12%  Similarity=0.105  Sum_probs=93.7

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEEEeeccccccee
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~  142 (458)
                      -....|-|.+.-++.++.+..+..||-. ++.....  ..++....++|..  ++..++ .+-..+.+.+|++.+....+
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~--n~tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL--NPTGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceeccc--CCchhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHH
Confidence            3455677777668888888889999944 4443433  3456677888987  666654 45567899999997654322


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      ...-..|....  +.|++.. ..++.+...|.+.+++..+.+.......          +..++.++++.+.  .+.+.+
T Consensus       112 LE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gk----------h~RRgtq~av~lE--d~vil~  176 (615)
T KOG2247|consen  112 LESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGK----------HQRRGTQIAVTLE--DYVILC  176 (615)
T ss_pred             HhccCcchHHH--HhhccCC-ccccccccccceEEEeccchhhhhhhcc----------cccceeEEEeccc--ceeeec
Confidence            11111222222  7788877 4567788889999999887665443321          3336788899886  356666


Q ss_pred             cCCCe
Q 012712          223 GSDEY  227 (458)
Q Consensus       223 ~~dg~  227 (458)
                      +.|..
T Consensus       177 dcd~~  181 (615)
T KOG2247|consen  177 DCDNT  181 (615)
T ss_pred             CcHHH
Confidence            55543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.94  E-value=3.9  Score=41.60  Aligned_cols=150  Identities=13%  Similarity=0.149  Sum_probs=87.1

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEE--------ecCCCE
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF--------NTDGDI   75 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------s~~~~~   75 (458)
                      -.||.-++.-+|-  |..+.+|+++++.-..                     .+.+-...|..+..        -|.=++
T Consensus        85 GiFpeI~RaWiTi--Dn~L~lWny~~~~e~~---------------------~~d~~shtIl~V~LvkPkpgvFv~~Iqh  141 (1311)
T KOG1900|consen   85 GIFPEIGRAWITI--DNNLFLWNYESDNELA---------------------EYDGLSHTILKVGLVKPKPGVFVPEIQH  141 (1311)
T ss_pred             ccchhhcceEEEe--CCeEEEEEcCCCCccc---------------------cccchhhhheeeeeecCCCCcchhhhhe
Confidence            4566666665554  7789999999855442                     24444555555543        223344


Q ss_pred             EEEecCCCeEEEEECCCccee---eeec-----cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc----cc---c-
Q 012712           76 LISGSDDRRVILWDWKTERVK---LSFH-----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL----ER---G-  139 (458)
Q Consensus        76 l~s~~~d~~i~iwd~~~~~~~---~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~----~~---~-  139 (458)
                      |+.-+.--.|.++-+...+..   ..+.     ......|.++....  +|+.+++ |.||  .+|.+.    ++   + 
T Consensus       142 lLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~--nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~r  216 (1311)
T KOG1900|consen  142 LLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE--NGRIFFA-GRDG--NLYELVYQAEDGWFGSR  216 (1311)
T ss_pred             eEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEecc--CCcEEEe-ecCC--CEEEEEEeccCchhhcc
Confidence            444444455666654322211   1110     11245678888665  6665555 4556  455442    11   0 


Q ss_pred             c-------------ee-eeecc-ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC
Q 012712          140 G-------------VE-TKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT  182 (458)
Q Consensus       140 ~-------------~~-~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  182 (458)
                      +             ++ ...+. .+..+|..+...... .++++-+..|+|.+||+..
T Consensus       217 c~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  217 CRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence            0             00 00122 567799999998877 7899999999999999976

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.79  E-value=5.4  Score=31.52  Aligned_cols=110  Identities=9%  Similarity=0.090  Sum_probs=62.7

Q ss_pred             EEEEccCCCCeEEEEEcC--CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712          109 QAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT  186 (458)
Q Consensus       109 ~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  186 (458)
                      .+.+.   ++.++.+.+.  ...|++||+.+++......+..  ..+..=-...-+..+..-.-.+|.-..+|.++-+..
T Consensus        50 GL~~~---~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~l  124 (262)
T COG3823          50 GLEYL---DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEEL  124 (262)
T ss_pred             ceeee---CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhh
Confidence            44554   6677777665  3469999999888776554441  122111111223234444556788888888887776


Q ss_pred             ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                      ..+..           .+.-..++-..   ..++.+....+++.-|.++..
T Consensus       125 g~~~y-----------~GeGWgLt~d~---~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         125 GRFSY-----------EGEGWGLTSDD---KNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             ccccc-----------CCcceeeecCC---cceEeeCCceEEEecCHHHhh
Confidence            66652           22334554432   335555555567776666543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.73  E-value=2.2  Score=33.16  Aligned_cols=28  Identities=14%  Similarity=0.006  Sum_probs=24.5

Q ss_pred             cEEEEEEecCC------cEEEeeecCCceEEEEE
Q 012712          428 QVCFSIYSADY------WWSKSQNFSCSILLFEW  455 (458)
Q Consensus       428 ~v~~~~~s~d~------~~l~s~~~d~~i~~w~~  455 (458)
                      .+.+++|||-|      -+||.-+.++.|.||.-
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            69999999977      67889999999999963

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.68  E-value=2.5  Score=35.77  Aligned_cols=92  Identities=10%  Similarity=0.097  Sum_probs=59.6

Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee------cCCcEEEecCCcccccccccc-----cccEEEE
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG------IESDIKILTPNAADRATLPTN-----IEQVCFS  432 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~-----~~~v~~~  432 (458)
                      -..|.+||..+.+-...-.+-.+.|++|.|..+.++++.|.      ....+..||..+.....+...     .++|..+
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            35689999876655544445567899999997777777764      356788999988876555442     3668777


Q ss_pred             EEec-CC-cEEEeee-cCCceEEEEE
Q 012712          433 IYSA-DY-WWSKSQN-FSCSILLFEW  455 (458)
Q Consensus       433 ~~s~-d~-~~l~s~~-~d~~i~~w~~  455 (458)
                      .+.. |+ ++.+.|. .++.-.|..|
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~  120 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKY  120 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEE
Confidence            7743 33 3333433 4555444433

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.67  E-value=7.5  Score=35.46  Aligned_cols=26  Identities=15%  Similarity=0.298  Sum_probs=19.6

Q ss_pred             ceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712          106 NVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      .|..+..++  .|..++-+|.+|.+.++
T Consensus       105 eV~~vl~s~--~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSP--TGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecC--CCceEEEecCCeeEEEE
Confidence            466777788  88888888888866554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.35  E-value=10  Score=38.92  Aligned_cols=33  Identities=9%  Similarity=0.238  Sum_probs=27.6

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcc
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTER   94 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~   94 (458)
                      .....++|+|...++|.+...|.|+++-...-+
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceE
Confidence            456688999999999999999999999865433

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=91.32  E-value=9  Score=33.15  Aligned_cols=61  Identities=11%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             CCCEEEEecCCCeEEEEECCCc-ceeeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeeccc
Q 012712           72 DGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILE  137 (458)
Q Consensus        72 ~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~  137 (458)
                      ++++|+.|..+| +.+-++... .....+  .+...|+++...+  .-+.|++-+ ....++++++..
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl--~~~~~v~q~~v~~--~~~lLi~Lsgk~~~L~~~~L~~   74 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKL--IGRRSVTQIWVLE--ENNVLLMISGKKPQLYSHPLSA   74 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEe--cCcCceEEEEEEh--hhCEEEEEeCCcceEEEEEHHH
Confidence            346899999998 555555542 222222  3567899999998  666666544 344599999844

Unpublished observations.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.28  E-value=8.3  Score=32.66  Aligned_cols=247  Identities=13%  Similarity=0.101  Sum_probs=125.9

Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC----Cccc-eeeecccCCCCcceeecceEEEEECCCC-----------
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG----AATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRN-----------  215 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------  215 (458)
                      .-+.|+++|.+ .+-++....+...+||....    .... ....+...   +.......+.+.|+...           
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~---~~~~~~~PTGiVfN~~~~F~vt~~g~~~   99 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP---PLAAEGTPTGQVFNGSDTFVVSGEGITG   99 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCC---CCCCCCCccEEEEeCCCceEEcCCCccc
Confidence            45789999988 56677667788999998611    1111 11111100   10122345666666431           


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc-cc-ccceeEEEeCCC--CcEEEEec--CCcEEEEEc
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DE-QVGITGLAFSDQ--SELLVSYN--DEFIYLFTQ  289 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~--~~~l~~~~--~~~i~i~~~  289 (458)
                      ...++.+++||+|.-|...-....-.          ....... .. ..--..+++...  +.+|....  .++|.+||-
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~----------~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~  169 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMT----------RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG  169 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCccccc----------ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence            13467788999999998543221000          0000111 11 122344555433  45665555  557888875


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                      .-.+....-...  ......                    .-....+..-.....|+-..- .++++.=+.|..-|.|-+
T Consensus       170 ~f~~~~~~g~F~--DP~iPa--------------------gyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~Vdv  226 (336)
T TIGR03118       170 SFRPPPLPGSFI--DPALPA--------------------GYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNV  226 (336)
T ss_pred             ccccccCCCCcc--CCCCCC--------------------CCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEE
Confidence            443211100000  000000                    000000111111111222222 444444455556689999


Q ss_pred             EEecCCeEEEEee--cCCceeeEEEecC------CCCeEEEeecCCcEEEecCCccccc-ccccccc------cEEEEEE
Q 012712          370 WKKKGGELIRVIE--ADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAADRA-TLPTNIE------QVCFSIY  434 (458)
Q Consensus       370 wd~~~~~~~~~~~--~~~~~v~~~~~s~------~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~------~v~~~~~  434 (458)
                      ||+ .|..++++.  +.-...+.|+..|      .+.+|+---.||+|..+|..+++.+ .+....+      ..+.++|
T Consensus       227 Fd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~f  305 (336)
T TIGR03118       227 FTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTF  305 (336)
T ss_pred             EcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeee
Confidence            998 788888874  2234567777765      3566766566999999999877644 3333222      3778888


Q ss_pred             ec
Q 012712          435 SA  436 (458)
Q Consensus       435 s~  436 (458)
                      -.
T Consensus       306 Gn  307 (336)
T TIGR03118       306 GN  307 (336)
T ss_pred             CC
Confidence            65

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.27  E-value=6.5  Score=31.40  Aligned_cols=149  Identities=15%  Similarity=0.143  Sum_probs=79.2

Q ss_pred             CEEEEecCCCeEEEEECCC--cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---C---cEEEe---ecc--cccc
Q 012712           74 DILISGSDDRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G---QVRHA---QIL--ERGG  140 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g---~i~vw---~~~--~~~~  140 (458)
                      +.|..+...+.|.+|++..  .+...++  .--+.|..+.++.  .|++|+|-=.+   .   .+|+|   ...  ....
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            3444435557899999983  3344555  3348899999999  99999985432   2   45553   222  1111


Q ss_pred             eeeeeccc---------------------cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeeccc-CCC
Q 012712          141 VETKLLGK---------------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPI-DDR  197 (458)
Q Consensus       141 ~~~~~~~~---------------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~~  197 (458)
                      +..+ +-+                     -..++.+++..|..+++++ |+ ++.+.+|.+..... ...+..... ...
T Consensus       105 v~vR-iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l  181 (215)
T PF14761_consen  105 VRVR-IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSL  181 (215)
T ss_pred             EEEE-EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhh
Confidence            1111 111                     1345677888886656544 43 36788887764433 111111111 011


Q ss_pred             CcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712          198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      -.|.....+..+++..   .++|..+. -.++++.+
T Consensus       182 ~~~~~~~~p~~v~ic~---~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  182 IDHIDNFKPTQVAICE---GYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             hheecCceEEEEEEEe---eEEEEecC-CEEEEEEE
Confidence            1122233456677763   47776654 45666554

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.18  E-value=18  Score=36.27  Aligned_cols=124  Identities=12%  Similarity=0.047  Sum_probs=74.0

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--ceeeecccCCCCcce-----eecceEEEEECCCCCcEEEEec
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYM-----TVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      .+...++|+|.....||.....|...+|++......  ..+....  ...++.     ....-..+.|.++ .+.|++++
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~--~~~gsi~~d~~e~s~w~rI~W~~~-~~~lLv~~  222 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR--NISGSIIFDPEELSNWKRILWVSD-SNRLLVCN  222 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeecc--CCCccccCCCcccCcceeeEecCC-CCEEEEEc
Confidence            466789999988788999999999999999222111  1111110  000110     1123457888876 56666666


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecCCcEEEEEccC
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~i~i~~~~~  291 (458)
                      . ..+.++|+.+......             .........|..+.-+|.. .++..-+...|...++..
T Consensus       223 r-~~l~~~d~~~~~~~~~-------------l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  223 R-SKLMLIDFESNWQTEY-------------LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             C-CceEEEECCCCCccch-------------hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            5 4689999987653110             1122234678888888872 233333456677777765

These proteins are found in fungi.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.04  E-value=4.6  Score=29.35  Aligned_cols=113  Identities=10%  Similarity=0.108  Sum_probs=68.7

Q ss_pred             EEEEecCCCEEEEecCCCeEEEEECCCccee-------eeeccCCCcceeEEEEccC---CCCeEEEEEcCCCcEEEeec
Q 012712           66 TVSFNTDGDILISGSDDRRVILWDWKTERVK-------LSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~i~~~~~~~~---~~~~~l~s~~~dg~i~vw~~  135 (458)
                      .-+|......|+.++.-+.|.|++.......       .+++ .-...|++++-.+.   .+...|+.|+. ..+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            3456555667888888899999987643221       1221 23457777775553   24556777765 57999999


Q ss_pred             ccccceeeeeccccccceEEEEEcC---CCCeEEEEecCCCeEEEEeCCCCC
Q 012712          136 LERGGVETKLLGKHQGRAHKLAIEP---GSPHVFYTCGEDGLVQHFDLRTGA  184 (458)
Q Consensus       136 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~  184 (458)
                      ..+..+..   +.-.+.++++.+-.   ....+++ .+-+..|.-||.+..+
T Consensus        81 ~~N~d~Fy---ke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   81 ENNSDLFY---KEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNE  128 (136)
T ss_pred             ccCchhhh---hhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcE
Confidence            98877653   33446677776632   1223444 4445677777765444

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.79  E-value=0.028  Score=49.49  Aligned_cols=106  Identities=19%  Similarity=0.296  Sum_probs=72.9

Q ss_pred             CCceEEEEEecCCCEEEE-ecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           61 RGCVNTVSFNTDGDILIS-GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      ++....++|..++..++. +-..+.+.+||+.+... .++..+-+..-.-+.|++  ....++.+-..|.+.+++-.+.+
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK--g~~el~ig~~~gn~viynhgtsR  150 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK--GTPELVIGNNAGNIVIYNHGTSR  150 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc--CCccccccccccceEEEeccchh
Confidence            455667888888865554 45568899999976543 222122222222278998  88888888889999999987776


Q ss_pred             ceeeeeccccccceEEEEEcCCCCeEEEEecCCC
Q 012712          140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG  173 (458)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  173 (458)
                      ....  ...|...++++++.+.+ . .+.++.|.
T Consensus       151 ~iiv--~Gkh~RRgtq~av~lEd-~-vil~dcd~  180 (615)
T KOG2247|consen  151 RIIV--MGKHQRRGTQIAVTLED-Y-VILCDCDN  180 (615)
T ss_pred             hhhh--hcccccceeEEEecccc-e-eeecCcHH
Confidence            6553  44599999999999987 3 44454443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.75  E-value=8.3  Score=35.07  Aligned_cols=148  Identities=14%  Similarity=0.103  Sum_probs=86.3

Q ss_pred             CCeEEEE-EcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC------eEEEEecCCCeEEEEeCCCCC-ccce
Q 012712          117 DDRSIVT-CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP------HVFYTCGEDGLVQHFDLRTGA-ATEL  188 (458)
Q Consensus       117 ~~~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~-~~~~  188 (458)
                      +.++|+. ++....+.--|++.++.+..  ..-|...  -+.|.|...      ..-+.|-.+..|.-.|.+... .+..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvvee--W~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEE--WDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeE--eecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            5555544 34445566666666666554  3334433  466666431      112334445556666665432 2222


Q ss_pred             eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEE
Q 012712          189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA  268 (458)
Q Consensus       189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  268 (458)
                      .....      +.......+..-...  .++++++..|.|++||.-..+               .....++-...|..+.
T Consensus       554 ~esKd------Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~id  610 (776)
T COG5167         554 VESKD------YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKHID  610 (776)
T ss_pred             eeehh------ccccccccccccccC--ceEEEecCCCceeeehhhcch---------------hhhcCcccccceeeeE
Confidence            11111      112223344444433  499999999999999964432               1233444456789999


Q ss_pred             eCCCCcEEEEecCCcEEEEEccC
Q 012712          269 FSDQSELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       269 ~~~~~~~l~~~~~~~i~i~~~~~  291 (458)
                      .+.+|+++.+.+...+.+.|+.-
T Consensus       611 vta~Gk~ilaTCk~yllL~d~~i  633 (776)
T COG5167         611 VTANGKHILATCKNYLLLTDVPI  633 (776)
T ss_pred             eecCCcEEEEeecceEEEEeccc
Confidence            99999999999999999988764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.43  E-value=1.4  Score=24.33  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=22.7

Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceee
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFT  190 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  190 (458)
                      |+++.++++...++.|.++|..+++....+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5665666666678899999998877665554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=90.28  E-value=28  Score=37.13  Aligned_cols=156  Identities=16%  Similarity=0.128  Sum_probs=84.0

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      .|-..++.|.-+++|..+=.  .|+.++.||.....-.. ....-...+..+.-.-  ||+..+ -+.+   .+-|+..+
T Consensus       360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qg--dG~lYA-k~~~---~l~nLSs~  430 (1774)
T PF11725_consen  360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQG--DGKLYA-KDDD---TLVNLSSG  430 (1774)
T ss_pred             HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccC--CCceEe-cCCC---ceeecCCC
Confidence            45566677777777765543  35567777765443210 1011223344444433  555444 2211   13344443


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc----ceeeecccCCCCcceeecceEEEEECCC
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT----ELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      ....     ..-..+.+...++++.--++++.....+.+|++....-.    ..+......      ......++.++++
T Consensus       431 ~~~~-----~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d------G~a~A~~VgLs~d  499 (1774)
T PF11725_consen  431 QMSE-----AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD------GKAQAQSVGLSND  499 (1774)
T ss_pred             Ccch-----hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccC------CchhhhheeecCC
Confidence            3211     122457778888998444666666667799988754211    111111110      1225678888875


Q ss_pred             CCcEEEEecCCCeEEEEecCCCc
Q 012712          215 NANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       215 ~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                         .|+++..+|.++.=++...+
T Consensus       500 ---rLFvADseGkLYsa~l~~~~  519 (1774)
T PF11725_consen  500 ---RLFVADSEGKLYSADLPAAQ  519 (1774)
T ss_pred             ---eEEEEeCCCCEEeccccccc
Confidence               57788899999888876554

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.18  E-value=1.4  Score=23.90  Aligned_cols=30  Identities=7%  Similarity=-0.037  Sum_probs=19.4

Q ss_pred             cCCceeeEEEecCCCCeEEEeec-C--CcEEEe
Q 012712          383 ADRHVVNCIEPHPHSTVLASSGI-E--SDIKIL  412 (458)
Q Consensus       383 ~~~~~v~~~~~s~~~~~l~s~~~-d--~~i~iw  412 (458)
                      ...+.-...+|||||+.|+-++. +  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34455678899999998876554 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.83  E-value=11  Score=31.89  Aligned_cols=123  Identities=11%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             ceeEEEEccCCCCeEEEEEcCCCcEEEeeccc------ccceeeeeccc-----cccceEEEEEcCCC-----------C
Q 012712          106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILE------RGGVETKLLGK-----HQGRAHKLAIEPGS-----------P  163 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~------~~~~~~~~~~~-----~~~~v~~~~~~~~~-----------~  163 (458)
                      .-+.|+++|  .+.+-++....+...+||...      ...+. ..+..     .....+.+.|+...           .
T Consensus        24 N~WGia~~p--~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~-vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~  100 (336)
T TIGR03118        24 NAWGLSYRP--GGPFWVANTGTGTATLYVGNPDTQPLVQDPLV-VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP  100 (336)
T ss_pred             ccceeEecC--CCCEEEecCCcceEEeecCCcccccCCccceE-EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence            457899999  888888877788999999861      21211 11221     12356677776432           2


Q ss_pred             eEEEEecCCCeEEEEeCCCCCc---cceeeecccCCCCcceeecceEEEEECCC-CCcEEEEe-cCCCeEEEEecCCCc
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPR-NANLFAVA-GSDEYTRLYDIRKYK  237 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~-~~dg~i~i~d~~~~~  237 (458)
                      ..++.+++||+|.-|...-...   ...+.....  .    ...-...+++... ++.+|+.+ -..++|.+||-.-.+
T Consensus       101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~----~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~  173 (336)
T TIGR03118       101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS--Q----QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP  173 (336)
T ss_pred             eeEEEEeCCceEEeecCcCCcccccccEEEEccC--C----CcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence            2367789999999998543322   111111100  0    0111234444422 13444443 467889999876543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.57  E-value=10  Score=31.31  Aligned_cols=146  Identities=13%  Similarity=0.107  Sum_probs=71.9

Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-C--CcEEEeecccc----cceeeeeccccccceEEE
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-D--GQVRHAQILER----GGVETKLLGKHQGRAHKL  156 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d--g~i~vw~~~~~----~~~~~~~~~~~~~~v~~~  156 (458)
                      .-.+||+.+++..... .....-..+-.+.|  ||++|.+|+. +  ..+++++....    ........-.....--..
T Consensus        47 ~s~~yD~~tn~~rpl~-v~td~FCSgg~~L~--dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~  123 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLT-VQTDTFCSGGAFLP--DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA  123 (243)
T ss_pred             EEEEEecCCCcEEecc-CCCCCcccCcCCCC--CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence            3468998887653322 22222333345677  9999999876 2  35788876441    111100001122333345


Q ss_pred             EEcCCCCeEEEEecCCC-eEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712          157 AIEPGSPHVFYTCGEDG-LVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR  234 (458)
Q Consensus       157 ~~~~~~~~~l~s~~~dg-~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  234 (458)
                      ..-||| ++|+.|+... +..+|.-+.. .....+......  .......--.-+...|+ +++|+.+..+.  .+||..
T Consensus       124 ~~L~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~--~~~~~~nlYP~~~llPd-G~lFi~an~~s--~i~d~~  197 (243)
T PF07250_consen  124 TTLPDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQT--SDTLPNNLYPFVHLLPD-GNLFIFANRGS--IIYDYK  197 (243)
T ss_pred             eECCCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhh--hccCccccCceEEEcCC-CCEEEEEcCCc--EEEeCC
Confidence            566788 5666666553 4455544221 111111111000  00001111234566787 78888887654  566877


Q ss_pred             CCcc
Q 012712          235 KYKW  238 (458)
Q Consensus       235 ~~~~  238 (458)
                      +.+.
T Consensus       198 ~n~v  201 (243)
T PF07250_consen  198 TNTV  201 (243)
T ss_pred             CCeE
Confidence            6653

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.55  E-value=16  Score=33.07  Aligned_cols=114  Identities=11%  Similarity=0.093  Sum_probs=64.2

Q ss_pred             ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712          261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR  340 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (458)
                      ...+..+.+.+++.+++++..+.+.. ....+.....                                 ..........
T Consensus       280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~---------------------------------~~f~~~~~~~  325 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEED---------------------------------FDFEEADIKS  325 (398)
T ss_pred             ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccc---------------------------------cceeecccCC
Confidence            45688999999999998887766544 2222210000                                 0011111111


Q ss_pred             ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee---cCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      ....+..+.| .+++..+++| ..|.+.... ..|+.-...+   .-....+.+.|.++++-+++| .+|.|.-|
T Consensus       326 ~~~~l~~v~~-~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        326 RGFGILDVGY-RSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             CCcceEEEEE-cCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            1113778887 7777766555 577666553 3444433322   223568899998877766655 56776554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.52  E-value=17  Score=33.40  Aligned_cols=117  Identities=14%  Similarity=0.200  Sum_probs=0.0

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC------CCcceeEEEEccCCCC------eEE
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDD------RSI  121 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~------~~l  121 (458)
                      +..+...-..-+.|+|.|||++|++--..|.|++++..++.........      -.+....|+++|  +-      .+|
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P--dF~~~~~n~~l   99 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP--DFMQEKGNPYV   99 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC--CccccCCCcEE


Q ss_pred             EEEc----------CCCcEEEeecccc-------cceeeeeccccccceEEEEEcCCCCeEEEEecCCC
Q 012712          122 VTCA----------ADGQVRHAQILER-------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG  173 (458)
Q Consensus       122 ~s~~----------~dg~i~vw~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  173 (458)
                      ....          ....|.-|.+...       +.+...........-..|.|.|++ .++++.+..+
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG-~LYVs~GD~g  167 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG-KIYYTIGEQG  167 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC-cEEEEECCCC

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.07  E-value=2.8  Score=28.10  Aligned_cols=53  Identities=8%  Similarity=-0.008  Sum_probs=36.2

Q ss_pred             EeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          402 SSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       402 s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .+..+|.+.-||+.+++...+...-.-.+.++.++|+.+++. ++-+.-+|++|
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv-~Et~~~Ri~ry   84 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLV-AETGRYRILRY   84 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEE-EEGGGTEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEE-EeccCceEEEE
Confidence            345578899999999987777666667889999999987755 34445555554

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.66  E-value=21  Score=33.37  Aligned_cols=117  Identities=15%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             EEEecCCCEEEEecCCCeEEEEECCCcceeeeec-cCC-CcceeEEEEccCCCCeEEEEEc--------------CCCcE
Q 012712           67 VSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-SGH-NDNVFQAKIMPFTDDRSIVTCA--------------ADGQV  130 (458)
Q Consensus        67 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~~~~l~s~~--------------~dg~i  130 (458)
                      +...++|.+++..+  ..+..+|+. |+.+.... ... ..-=..+...|  +|++|+.+.              .|. |
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~--nGn~L~l~~~~~~~~~~~~~~~~~D~-I  226 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP--NGNLLILASETKYVDEDKDVDTVEDV-I  226 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T--TS-EEEEEEETTEE-TS-EE---S-E-E
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC--CCCEEEEEeecccccCCCCccEecCE-E
Confidence            66678898887655  678888875 44433331 110 01123566777  888887766              122 2


Q ss_pred             EEeecccccceeeeecccc-------------------------ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc
Q 012712          131 RHAQILERGGVETKLLGKH-------------------------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA  185 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  185 (458)
                      ...| .+++.+....+..|                         ---++++.+.+....+++++-.-..|...|.++++.
T Consensus       227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i  305 (477)
T PF05935_consen  227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI  305 (477)
T ss_dssp             EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred             EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence            2233 33322211111110                         024788999995547777777777898999888877


Q ss_pred             cceee
Q 012712          186 TELFT  190 (458)
Q Consensus       186 ~~~~~  190 (458)
                      ...+.
T Consensus       306 ~Wilg  310 (477)
T PF05935_consen  306 KWILG  310 (477)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            66554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=88.54  E-value=3.4  Score=39.84  Aligned_cols=151  Identities=11%  Similarity=0.080  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC
Q 012712          119 RSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD  196 (458)
Q Consensus       119 ~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  196 (458)
                      ..+..++.++.|.++.-..+..  ............+.++.+++..   +..|.-||++-.+--. ....  ....+  .
T Consensus       548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S---lgagl~dgt~a~y~ra-p~gS--wd~ep--~  619 (925)
T KOG3522|consen  548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS---LGAGLIDGTLAVYGRA-PSGS--WDGEP--N  619 (925)
T ss_pred             CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc---cccCccCCccccccCC-CCCC--CCCCC--c
Confidence            4577888889999887652221  1111122233456667776643   5666666665544211 1000  00000  0


Q ss_pred             CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712          197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL  276 (458)
Q Consensus       197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  276 (458)
                      ..-+....++.+.++..|    ++.++.+|.|.++...+......            ......+...|+++.+..+|-++
T Consensus       620 ~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~------------leahqee~~~Vthm~~~~~gVwv  683 (925)
T KOG3522|consen  620 ISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWD------------LEAHQEEAHSVTHMLYLDNGVWV  683 (925)
T ss_pred             cccccCCccccchhhhhc----eeeeecCCceEEEechhccccch------------hHHHHhhcceEEEEEeeCCceEE
Confidence            000114446788887754    55577889999999877643322            12233455689999999999888


Q ss_pred             EEecCCcEEEEEccCCC
Q 012712          277 VSYNDEFIYLFTQDMGL  293 (458)
Q Consensus       277 ~~~~~~~i~i~~~~~~~  293 (458)
                      +..+.+.+++++..+-.
T Consensus       684 afasG~~~rlfhtetl~  700 (925)
T KOG3522|consen  684 AFASGDEERLFHTETLW  700 (925)
T ss_pred             EEcCCCEEEEecccccC
Confidence            88888888888766543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.46  E-value=22  Score=33.28  Aligned_cols=155  Identities=14%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             EEEEe---cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc-
Q 012712           75 ILISG---SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-  150 (458)
Q Consensus        75 ~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-  150 (458)
                      ++++.   .......+.|.. |.....+. ........+...+  +|.+++...  ..+..+|+. ++......+.... 
T Consensus       117 ~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~-~~~~~~~~~~~l~--nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~  189 (477)
T PF05935_consen  117 YFVNGNDWDSSSYTYLIDNN-GDVRWYLP-LDSGSDNSFKQLP--NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY  189 (477)
T ss_dssp             EEEEETT--BEEEEEEEETT-S-EEEEE--GGGT--SSEEE-T--TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred             EEEeCCCCCCCceEEEECCC-ccEEEEEc-cCccccceeeEcC--CCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence            44544   234556666643 44433331 1111111155667  888887666  677888874 4443333343311 


Q ss_pred             cceEEEEEcCCCCeEEEEecC-------------CCeEEEEeCCCCCccceeeecccCCC-----------------Ccc
Q 012712          151 GRAHKLAIEPGSPHVFYTCGE-------------DGLVQHFDLRTGAATELFTCRPIDDR-----------------RNY  200 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~~  200 (458)
                      ..=..+...|+| ++|+.+..             +-.|..+| .+|+.+..+........                 ...
T Consensus       190 ~~HHD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~  267 (477)
T PF05935_consen  190 DFHHDIDELPNG-NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG  267 (477)
T ss_dssp             -B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred             ccccccEECCCC-CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence            122457778888 55665551             12355666 67766655544332210                 011


Q ss_pred             eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      ..-..++++.+.+.++.+++++-.-..|...|.++++.
T Consensus       268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i  305 (477)
T PF05935_consen  268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI  305 (477)
T ss_dssp             SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred             CCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence            12235789999996566777766666888888777664

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.40  E-value=14  Score=38.02  Aligned_cols=186  Identities=9%  Similarity=0.110  Sum_probs=90.5

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE--------ECCCCCcEEEEe
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA--------IDPRNANLFAVA  222 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~l~~~  222 (458)
                      ..-..+-+-|.=...-  .+-|+.+.+|+.+++.....+...          ...|..+.        |-|. =+++++-
T Consensus        79 ~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~----------shtIl~V~LvkPkpgvFv~~-IqhlLvv  145 (1311)
T KOG1900|consen   79 ECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGL----------SHTILKVGLVKPKPGVFVPE-IQHLLVV  145 (1311)
T ss_pred             ceeeeeccchhhcceE--EEeCCeEEEEEcCCCCccccccch----------hhhheeeeeecCCCCcchhh-hheeEEe
Confidence            3334455555432323  345788999999986655444321          11222222        2332 1233333


Q ss_pred             cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712          223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      +.--.|.++-+.-.+......      .+...-...-....|+++....+|+.+.+|.+|.++-.-.........-..+.
T Consensus       146 aT~~ei~ilgV~~~~~~~~~~------~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~K  219 (1311)
T KOG1900|consen  146 ATPVEIVILGVSFDEFTGELS------IFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRK  219 (1311)
T ss_pred             cccceEEEEEEEeccccCccc------ccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhccccc
Confidence            334456666554332211100      00000111123467899999999999999999965533222211100000000


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                      .....         ..+...       .+..-.+. .+..  +|..+.. +..-+.+++-++.|+|.+|++..
T Consensus       220 iclt~---------s~ls~l-------vPs~~~~~~~~~d--pI~qi~I-D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  220 ICLTK---------SVLSSL-------VPSLLSVPGSSKD--PIRQITI-DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccCch---------hHHHHh-------hhhhhcCCCCCCC--cceeeEe-ccccceeeeeccCceEEEEEccC
Confidence            00000         000000       00011111 3333  4888887 77788999999999999999965

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=88.27  E-value=14  Score=33.85  Aligned_cols=30  Identities=23%  Similarity=0.445  Sum_probs=24.5

Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      .+.+++..+. .+.+++...+|.|.+|++..
T Consensus       191 ~I~~v~~d~~-r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPS-RRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETT-TTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCC-cCEEEEEeCCCcEEEEEEeC
Confidence            4889999987 58999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.13  E-value=18  Score=32.11  Aligned_cols=196  Identities=15%  Similarity=0.174  Sum_probs=101.8

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEe----cCCCE--EEEecC
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN----TDGDI--LISGSD   81 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~--l~s~~~   81 (458)
                      |...+++....++-+.+||++ |+.+..                     +.  .+..+.+..-    -.|+.  ||.++.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~---------------------~~--~Gr~NNVDvrygf~l~g~~vDlavas~  121 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQS---------------------LP--VGRPNNVDVRYGFPLNGKTVDLAVASD  121 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEE---------------------E---SS-EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEe---------------------ec--CCCcceeeeecceecCCceEEEEEEec
Confidence            455678888888999999999 776633                     11  1233333221    13332  344432


Q ss_pred             -C---CeEEEEECCC--cceeeeecc------CCCcceeEEEEccC-CCCe-EEEEEcCCCcEEEeecccccc--e---e
Q 012712           82 -D---RRVILWDWKT--ERVKLSFHS------GHNDNVFQAKIMPF-TDDR-SIVTCAADGQVRHAQILERGG--V---E  142 (458)
Q Consensus        82 -d---~~i~iwd~~~--~~~~~~~~~------~~~~~i~~~~~~~~-~~~~-~l~s~~~dg~i~vw~~~~~~~--~---~  142 (458)
                       +   ..|++|.++.  +. +..+..      .-...++.+|.-.. .++. +.+....+|.+..|.+.....  +   .
T Consensus       122 R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l  200 (381)
T PF02333_consen  122 RSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL  200 (381)
T ss_dssp             -CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred             CcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence             1   4699997753  32 222210      11134677776421 1344 555677789999888863221  1   1


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc--cceeeecccCCCCcceeecceEEEEEC--CCC-Cc
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAID--PRN-AN  217 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~-~~  217 (458)
                      .+.+. -...+..|...... ..|+.+-++.-|.-|+.+....  ...+......   .  ....+..|++-  +++ +.
T Consensus       201 VR~f~-~~sQ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~---~--l~aDvEGlaly~~~~g~gY  273 (381)
T PF02333_consen  201 VREFK-VGSQPEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD---G--LVADVEGLALYYGSDGKGY  273 (381)
T ss_dssp             EEEEE--SS-EEEEEEETTT-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS---S--B-S-EEEEEEEE-CCC-EE
T ss_pred             EEEec-CCCcceEEEEeccc-CCEEEecCccEEEEEecCCCCCCcceeeeccccc---c--cccCccceEEEecCCCCeE
Confidence            12232 23477888888776 5688888888888888763322  1222111110   0  22345566553  332 34


Q ss_pred             EEEEecCCCeEEEEecCC
Q 012712          218 LFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~  235 (458)
                      +|++.-.+++..+|+.+.
T Consensus       274 LivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  274 LIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEEGGGTEEEEEESST
T ss_pred             EEEEcCCCCeEEEEecCC
Confidence            555555677899999875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.79  E-value=15  Score=37.72  Aligned_cols=34  Identities=6%  Similarity=-0.026  Sum_probs=27.4

Q ss_pred             CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712          103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      .......++|+|  ...+++.+...|.|+++....-
T Consensus        34 ~~~~~~~~afD~--~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   34 FPSTPSALAFDP--TQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCCCCcceeecc--ccceEEEEEecccEEEecccce
Confidence            334566789999  9999999999999999976443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.58  E-value=1.7  Score=41.37  Aligned_cols=38  Identities=16%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             CceEEEEEec----CCCEEEEecCCCeEEEEECCCcceeeee
Q 012712           62 GCVNTVSFNT----DGDILISGSDDRRVILWDWKTERVKLSF   99 (458)
Q Consensus        62 ~~v~~~~~s~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~   99 (458)
                      +.+.++++++    +..+|++.+.|+++|+||+.++.++...
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            4455666666    6789999999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.96  E-value=3.5  Score=39.34  Aligned_cols=74  Identities=16%  Similarity=0.250  Sum_probs=42.9

Q ss_pred             CCeEEEEEcCCCcEEEeeccc----ccceeeeeccc--------------------cccceEEEEEcC---CCCeEEEEe
Q 012712          117 DDRSIVTCAADGQVRHAQILE----RGGVETKLLGK--------------------HQGRAHKLAIEP---GSPHVFYTC  169 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~----~~~~~~~~~~~--------------------~~~~v~~~~~~~---~~~~~l~s~  169 (458)
                      +...++.+..||.+.......    +.......+..                    ....+..+++++   ++..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            556777777888888777654    11111111111                    123445566665   233688999


Q ss_pred             cCCCeEEEEeCCCCCccceee
Q 012712          170 GEDGLVQHFDLRTGAATELFT  190 (458)
Q Consensus       170 ~~dg~i~iwd~~~~~~~~~~~  190 (458)
                      +.|+.+|+||+.+++++....
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEec
Confidence            999999999999999865543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.44  E-value=23  Score=31.51  Aligned_cols=195  Identities=15%  Similarity=0.221  Sum_probs=102.0

Q ss_pred             cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEE--ccCCCCeE--EEEEcC-C---CcEEEeeccccccee
Q 012712           71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKI--MPFTDDRS--IVTCAA-D---GQVRHAQILERGGVE  142 (458)
Q Consensus        71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~--l~s~~~-d---g~i~vw~~~~~~~~~  142 (458)
                      |...+++....++-+.+||++ |+.+..+..+.-+.| .+.+  .-  +++.  |+.++. +   ..|++|.+.......
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-Dvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L  141 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-DVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL  141 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-EEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-eeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence            345677777888899999987 555555533322222 2222  11  3333  444443 2   469999886432211


Q ss_pred             eeecc-------ccccceEEEEE--cC-CCCeEEEEecCCCeEEEEeCC---CCC----ccceeeecccCCCCcceeecc
Q 012712          143 TKLLG-------KHQGRAHKLAI--EP-GSPHVFYTCGEDGLVQHFDLR---TGA----ATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       143 ~~~~~-------~~~~~v~~~~~--~~-~~~~~l~s~~~dg~i~iwd~~---~~~----~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      .. +.       .....+..+|+  +| ++..+++....+|.+.-|-+.   .+.    .++.+.           -...
T Consensus       142 ~~-v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-----------~~sQ  209 (381)
T PF02333_consen  142 TD-VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-----------VGSQ  209 (381)
T ss_dssp             EE--CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE------------SS-
T ss_pred             eE-cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-----------CCCc
Confidence            11 11       11134566666  33 354567778888998888764   222    223332           2235


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc-ccccccceeEEEeC--CCC-cEEEEec-
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFS--DQS-ELLVSYN-  280 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~--~~~-~~l~~~~-  280 (458)
                      +..+..... ...|+.+-++.-|+-|+.+.........         .... -.+....+..|+.-  +++ .+|+.++ 
T Consensus       210 ~EGCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~~~~---------v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ  279 (381)
T PF02333_consen  210 PEGCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGNDRTL---------VASADGDGLVADVEGLALYYGSDGKGYLIVSSQ  279 (381)
T ss_dssp             EEEEEEETT-TTEEEEEETTTEEEEEESSCCC-S--EE---------EEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred             ceEEEEecc-cCCEEEecCccEEEEEecCCCCCCccee---------eecccccccccCccceEEEecCCCCeEEEEEcC
Confidence            777888876 5688889999888888876432111000         0000 11223567777764  343 3555555 


Q ss_pred             -CCcEEEEEccC
Q 012712          281 -DEFIYLFTQDM  291 (458)
Q Consensus       281 -~~~i~i~~~~~  291 (458)
                       +++..+|+...
T Consensus       280 G~~sf~Vy~r~~  291 (381)
T PF02333_consen  280 GDNSFAVYDREG  291 (381)
T ss_dssp             GGTEEEEEESST
T ss_pred             CCCeEEEEecCC
Confidence             44799999775

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=86.32  E-value=43  Score=34.48  Aligned_cols=190  Identities=9%  Similarity=0.114  Sum_probs=0.0

Q ss_pred             CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec---------CCCEEE
Q 012712            7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT---------DGDILI   77 (458)
Q Consensus         7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---------~~~~l~   77 (458)
                      +-|.+...--+....|.+-+.++.+.+..                   -.++ ...-|++++...         ...+||
T Consensus       991 ~~de~~~~p~~~~f~i~LisP~sw~vi~~-------------------iefq-~~E~v~~~k~v~L~~~~t~~~~k~yla 1050 (1366)
T KOG1896|consen  991 SRDENVIHPEGEQFSIQLISPESWEVIDK-------------------IEFQ-ENEHVLHMKYVILDDEETTKGKKPYLA 1050 (1366)
T ss_pred             cccccccccccccceeEEecCCccccccc-------------------cccC-ccceeeEEEEEEEEecccccCCcceEE


Q ss_pred             EecC---------CCeEEEEEC-----------CCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc
Q 012712           78 SGSD---------DRRVILWDW-----------KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE  137 (458)
Q Consensus        78 s~~~---------d~~i~iwd~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  137 (458)
                      .|..         .|.+.|+|+           ...+....+...-++.|..++=-   +|.++.+-+.  .|.+|++..
T Consensus      1051 vGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~Gq--KI~v~~l~r 1125 (1366)
T KOG1896|consen 1051 VGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQGQ--KIIVRKLDR 1125 (1366)
T ss_pred             EEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEccCc--EEEEEEecc


Q ss_pred             ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712          138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      ...+....+..-.-.+.++..-.   ++++.|.--..|.+.-....-..-.+-....       ..-.+.++.|--+|++
T Consensus      1126 ~~~ligVaFiD~~~yv~s~~~vk---nlIl~gDV~ksisfl~fqeep~rlsL~srd~-------~~l~v~s~EFLVdg~~ 1195 (1366)
T KOG1896|consen 1126 DSELIGVAFIDLPLYVHSMKVVK---NLILAGDVMKSISFLGFQEEPYRLSLLSRDF-------EPLNVYSTEFLVDGSN 1195 (1366)
T ss_pred             CCcceeeEEeccceeEEehhhhh---hheehhhhhhceEEEEEccCceEEEEeecCC-------chhhceeeeeEEcCCe


Q ss_pred             E-EEEecCCCeEEEE
Q 012712          218 L-FAVAGSDEYTRLY  231 (458)
Q Consensus       218 ~-l~~~~~dg~i~i~  231 (458)
                      + ++++..++.|++|
T Consensus      1196 L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1196 LSFLVSDADRNIHVY 1210 (1366)
T ss_pred             eEEEEEcCCCcEEEE

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=86.06  E-value=34  Score=32.99  Aligned_cols=171  Identities=12%  Similarity=0.161  Sum_probs=89.7

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCccee--eeeccCCCcceeEEEEccCC----CCeEEEEEcC-C---CcE
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFT----DDRSIVTCAA-D---GQV  130 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~~~l~s~~~-d---g~i  130 (458)
                      .+.|-.+.|.++++.+++.-.+|.|.+||...+...  ......+...+..-+|-+..    ...++++.+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            578899999999999999999999999999433221  12222233322222333311    1334444333 2   246


Q ss_pred             EEeec--ccccceeee--eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          131 RHAQI--LERGGVETK--LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       131 ~vw~~--~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      +++.+  .........  ....+...-..+++. +| . |+.- .+++|.+|++..-+....+..+......   . ..+
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G-~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~---~-~~~  280 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FG-K-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKE---S-DDL  280 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEe-CC-E-EEEE-eCCEEEEEEcCCceEEEEEEechhhccc---c-ccc
Confidence            67777  222211111  111111111223333 34 3 3333 6789999999888777777655322111   0 123


Q ss_pred             EEE-EECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          207 NAI-AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       207 ~~~-~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      .++ +.+|   ++++.+ .+..|++.|+.-........
T Consensus       281 vSl~~~s~---nRvLLs-~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  281 VSLKPPSP---NRVLLS-VNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             eEeecCCC---CeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence            333 2333   344433 35689999998776555443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.94  E-value=28  Score=32.03  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=52.2

Q ss_pred             cceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712          262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN  341 (458)
Q Consensus       262 ~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (458)
                      -.|..+..++.|..++..+-+.+.+..+...-....+.              .+++.......    ...-.+.|... .
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~--------------eDgk~~v~CRt----~~i~~~~ftss-~  164 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEF--------------EDGKSTVNCRT----TPVAERFFTSS-T  164 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCcccee--------------cCCCceEEEEe----ecccceeeccC-C
Confidence            46788889999998888776666666653211100000              00000000000    00001122222 3


Q ss_pred             eeeeeEEEEecCCC---cEEEEecCCCeEEEEEecCCeE
Q 012712          342 CVTVKGVNFFGPKC---EYVVSGSDCGRIFIWKKKGGEL  377 (458)
Q Consensus       342 ~~~i~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~  377 (458)
                      ..++..++| +|+.   ..|..-+.|+.||+||+.....
T Consensus       165 ~ltl~Qa~W-HP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  165 SLTLKQAAW-HPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             ceeeeeccc-cCCccCCceEEEEecCcEEEEEecCCcch
Confidence            335778888 8875   5777778899999999865443

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.52  E-value=22  Score=30.30  Aligned_cols=81  Identities=14%  Similarity=0.209  Sum_probs=51.7

Q ss_pred             CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec------CCCeEEEEECCC
Q 012712           19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------DDRRVILWDWKT   92 (458)
Q Consensus        19 d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~d~~i~iwd~~~   92 (458)
                      -..|.+||.++.+...-                     -.+-.+.|++|.|..+.++++.|.      ....+..||+.+
T Consensus        15 C~~lC~yd~~~~qW~~~---------------------g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~   73 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSP---------------------GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN   73 (281)
T ss_pred             CCEEEEEECCCCEeecC---------------------CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence            34699999997765521                     223467899999987777777653      356788999887


Q ss_pred             cceeeeecc----CCCcceeEEEEccCCCCeEEE
Q 012712           93 ERVKLSFHS----GHNDNVFQAKIMPFTDDRSIV  122 (458)
Q Consensus        93 ~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~  122 (458)
                      ..- ..+..    .-.++|..+.+... |...+.
T Consensus        74 ~~w-~~~~~~~s~~ipgpv~a~~~~~~-d~~~~~  105 (281)
T PF12768_consen   74 QTW-SSLGGGSSNSIPGPVTALTFISN-DGSNFW  105 (281)
T ss_pred             Cee-eecCCcccccCCCcEEEEEeecc-CCceEE
Confidence            653 22211    12467888887542 443343

>PLN02153 epithiospecifier protein

Probab=85.03  E-value=27  Score=30.93  Aligned_cols=108  Identities=12%  Similarity=0.183  Sum_probs=52.5

Q ss_pred             CCCEEEEecCC-------CeEEEEECCCcceeeeeccCC--Cc---ceeEEEEccCCCCeEEEEEcCC-----CcEEEee
Q 012712           72 DGDILISGSDD-------RRVILWDWKTERVKLSFHSGH--ND---NVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQ  134 (458)
Q Consensus        72 ~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~--~~---~i~~~~~~~~~~~~~l~s~~~d-----g~i~vw~  134 (458)
                      ++++++.|+.+       ..+.+||+.+.+-......+.  ..   ....+.+    ++.+++.|+.+     ..+.++|
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd  107 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV----GTKLYIFGGRDEKREFSDFYSYD  107 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE----CCEEEEECCCCCCCccCcEEEEE
Confidence            45666667653       257788887654322110010  10   1112222    66777787753     2467788


Q ss_pred             cccccceeeeecc----ccccceEEEEEcCCCCeEEEEecCC-----------CeEEEEeCCCCCc
Q 012712          135 ILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCGED-----------GLVQHFDLRTGAA  185 (458)
Q Consensus       135 ~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~  185 (458)
                      ..+.+......+.    .....-.+++. -++ ++++.|+.+           ..+.+||.++.+-
T Consensus       108 ~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  171 (341)
T PLN02153        108 TVKNEWTFLTKLDEEGGPEARTFHSMAS-DEN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW  171 (341)
T ss_pred             CCCCEEEEeccCCCCCCCCCceeeEEEE-ECC-EEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence            7765443221111    00111122222 234 567777653           2477788876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		5e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		5e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		7e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-06
2h9l_A	329	Wdr5delta23 Length = 329		3e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-04

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 57  LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
           +D H   VN +SFN   + IL +GS D+ V LWD +  ++KL     H D +FQ    P 
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 116 ---------TDDR-SIVTCAADGQVRHAQILERGGVETKLL-GKHQGRAHKLAIEPGSPH 164
                    TD R ++   +  G+ + A+  E G  E   + G H  +    +  P  P 
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 165 VFYTCGEDGLVQ 176
           V  +  ED ++Q
Sbjct: 391 VICSVSEDNIMQ 402

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 143/377 (37%), Gaps = 48/377 (12%)
Query: 43  ASEDLVLRL-----GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL 97
           AS+D  ++L      +   L  H   VN V+F  DG  + S SDD+ V LW+   +   L
Sbjct: 239 ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL--L 296
Query: 98  SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157
              +GH+ +V+     P  D ++I + + D  V+   +  R G   + L  H      +A
Sbjct: 297 QTLTGHSSSVWGVAFSP--DGQTIASASDDKTVK---LWNRNGQHLQTLTGHSSSVWGVA 351
Query: 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217
             P       +  +D  V+ ++ R G   +  T      R           +A  P +  
Sbjct: 352 FSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR----------GVAFSP-DGQ 398
Query: 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277
             A A  D+  +L++            GQ         L G     + G+AFS   + + 
Sbjct: 399 TIASASDDKTVKLWNRN----------GQ-----LLQTLTG-HSSSVWGVAFSPDDQTIA 442
Query: 278 SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA-SEMGSDHTSAASPSTANTDVRIAP--Q 334
           S +D+         G           S R  A S  G    SA+   T     R     Q
Sbjct: 443 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 502
Query: 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394
              GH +  +V+GV  F P  + + S SD   + +W +  G+L++ +      V  +   
Sbjct: 503 TLTGHSS--SVRGV-AFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFS 558
Query: 395 PHSTVLASSGIESDIKI 411
           P    +AS+  +  +K+
Sbjct: 559 PDGQTIASASSDKTVKL 575

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 57  LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
           +D H   VN +SFN   + IL +GS D+ V LWD +  ++KL     H D +FQ +  P 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 116 ---------TDDR-SIVTCAADGQVRHAQILERGGVETKLL-GKHQGRAHKLAIEPGSPH 164
                    TD R ++   +  G+ +  +  E G  E   + G H  +    +  P  P 
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 165 VFYTCGEDGLVQ 176
           V  +  ED ++Q
Sbjct: 389 VICSVSEDNIMQ 400

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 57  LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
           +D H   VN +SFN   + IL +GS D+ V LWD +  ++KL     H D +FQ    P 
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 116 ---------TDDR-SIVTCAADGQVRHAQILERGGVETKLL-GKHQGRAHKLAIEPGSPH 164
                    TD R ++   +  G+ + A+  E G  E   + G H  +    +  P  P 
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 165 VFYTCGEDGLVQ 176
           V  +  ED + Q
Sbjct: 391 VICSVSEDNIXQ 402

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 57  LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
           +D H   VN +SFN   + IL +GS D+ V LWD +  ++KL     H D +FQ +  P 
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 116 TDDRSIVTCAADGQVRHAQILERGGVETK-------------LLGKHQGRAHKLAIEPGS 162
             + +I+  +   +  H   L + G E               + G H  +    +  P  
Sbjct: 335 --NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 163 PHVFYTCGEDGLVQ 176
           P +  +  ED ++Q
Sbjct: 393 PWIICSVSEDNIMQ 406

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 57  LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
           +D H   VN +SFN   + IL +GS D+ V LWD +  ++KL     H D +FQ +  P 
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 116 TDDRSIVTCAADGQVRHAQILERGGVETK-------------LLGKHQGRAHKLAIEPGS 162
             + +I+  +   +  H   L + G E               + G H  +    +  P  
Sbjct: 333 --NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 163 PHVFYTCGEDGLVQ 176
           P +  +  ED ++Q
Sbjct: 391 PWIICSVSEDNIMQ 404

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 57  LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
           +D H   VN +SFN   + IL +GS D+ V LWD +  ++KL     H D +FQ +  P 
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 116 TDDRSIVTCAADGQVRHAQILERGGVETK-------------LLGKHQGRAHKLAIEPGS 162
             + +I+  +   +  H   L + G E               + G H  +    +  P  
Sbjct: 337 --NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 394
Query: 163 PHVFYTCGEDGLVQ 176
           P +  +  ED ++Q
Sbjct: 395 PWIICSVSEDNIMQ 408

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/361 (19%), Positives = 141/361 (39%), Gaps = 80/361 (22%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 74
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 132
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 133 SVRIWDVKTG-----MCLKTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 180
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY---NDEFIYLFTQD 290
                   T  GQ     C   LI D+   ++ + FS   + +++    ND  ++ +++ 
Sbjct: 181 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG 227
Query: 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350
             L                                        + Y GH+N       NF
Sbjct: 228 KCL----------------------------------------KTYTGHKNEKYCIFANF 247
Query: 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410
                +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 411 I 411
           I
Sbjct: 308 I 308

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 74
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 132
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 133 SVRIWDVKTG-----MCLKTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 180
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 181 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 228 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 249
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 250 TGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 93
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 151
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 152 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 199
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 200 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 246
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 247 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 268
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 95
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 153
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 154 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 201
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 202 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 248
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 249 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 270
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 271 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 329

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 71
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 129
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 130 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 177
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 178 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 225 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 246
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 144/373 (38%), Gaps = 74/373 (19%)
Query: 42  RASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLS 98
           R SE +     +   L  H   V++V F+ +G+ L S S D+ + +W   D K E+    
Sbjct: 7   RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-- 64
Query: 99  FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158
             SGH   +     + ++ D +++  A+D +      +  G     L G H         
Sbjct: 65  --SGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNF 118
Query: 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218
            P S ++  +   D  V+ +D++TG        + +    + ++ V+ N      R+ +L
Sbjct: 119 NPQS-NLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSL 166
Query: 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278
              +  D   R++D         T  GQ     C   LI D+   ++ + FS        
Sbjct: 167 IVSSSYDGLCRIWD---------TASGQ-----CLKTLIDDDNPPVSFVKFSP------- 205
Query: 279 YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338
            N ++I   T D  L                     D++      T           Y G
Sbjct: 206 -NGKYILAATLDNTLKL------------------WDYSKGKCLKT-----------YTG 235
Query: 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST 398
           H+N       NF     +++VSGS+   ++IW  +  E+++ ++    VV     HP   
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 399 VLASSGIESDIKI 411
           ++AS+ +E+D  I
Sbjct: 296 IIASAALENDKTI 308

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 77
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 135
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 136 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 183
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 184 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 231 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 252
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 144/373 (38%), Gaps = 74/373 (19%)
Query: 42  RASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLS 98
           R SE +     +   L  H   V++V F+ +G+ L S S D+ + +W   D K E+    
Sbjct: 7   RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-- 64
Query: 99  FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158
             SGH   +     + ++ D +++  A+D +      +  G     L G H         
Sbjct: 65  --SGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNF 118
Query: 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218
            P S ++  +   D  V+ +D++TG        + +    + ++ V+ N      R+ +L
Sbjct: 119 NPQS-NLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSL 166
Query: 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278
              +  D   R++D         T  GQ     C   LI D+   ++ + FS        
Sbjct: 167 IVSSSYDGLCRIWD---------TASGQ-----CLKTLIDDDNPPVSFVKFSP------- 205
Query: 279 YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338
            N ++I   T D  L                     D++      T           Y G
Sbjct: 206 -NGKYILAATLDNTLKL------------------WDYSKGKCLKT-----------YTG 235
Query: 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST 398
           H+N       NF     +++VSGS+   ++IW  +  E+++ ++    VV     HP   
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 399 VLASSGIESDIKI 411
           ++AS+ +E+D  I
Sbjct: 296 IIASAALENDKTI 308

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 72
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 130
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 131 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 178
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 179 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 225
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 226 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 247
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 248 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 306

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 77
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 135
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 136 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 183
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 184 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 231 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 252
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 67
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 125
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 126 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 173
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 174 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 220
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 221 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 242
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 243 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 301

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 71
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 129
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 130 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 177
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 178 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 225 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 246
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 76
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 134
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 135 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 182
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 183 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 229
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 230 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 251
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 252 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 310

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 77
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 135
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 136 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 183
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 184 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 231 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 252
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 88
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 146
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 147 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 194
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 195 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 241
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 242 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 263
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 264 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 322

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
           L  H   V++V F+ +G+ L S S D+ + +W   D K E+      SGH   +     +
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 70
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
            ++ D +++  A+D +      +  G     L G H          P S ++  +   D 
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 128
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
            V+ +D++TG        + +    + ++ V+ N      R+ +L   +  D   R++D 
Sbjct: 129 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 176
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
                   T  GQ     C   LI D+   ++ + FS   + +L +  D  + L+    G
Sbjct: 177 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 223
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
                                                    + Y GH+N       NF  
Sbjct: 224 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 245
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
              +++VSGS+   ++IW  +  E+++ ++    VV     HP   ++AS+ +E+D  I
Sbjct: 246 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 304

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/374 (20%), Positives = 143/374 (38%), Gaps = 76/374 (20%)
Query: 42  RASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLS 98
           R SE +     +   L  H   V++V F+ +G+ L + S D+ + +W   D K E+    
Sbjct: 7   RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI-- 64
Query: 99  FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158
             SGH   +     + ++ D +++  A+D +      +  G     L G H         
Sbjct: 65  --SGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNF 118
Query: 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218
            P S ++  +   D  V+ +D++TG        + +    + ++ V+ N      R+ +L
Sbjct: 119 NPQS-NLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSL 166
Query: 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLV 277
              +  D   R++D         T  GQ     C   LI D+   ++ + FS   + +L 
Sbjct: 167 IVSSSYDGLCRIWD---------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 278 SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337
           +  D  + L+    G                                         + Y 
Sbjct: 213 ATLDNTLKLWDYSKGK--------------------------------------CLKTYT 234
Query: 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397
           GH+N       NF     +++VSGS+   ++IW  +  E+++ ++    VV     HP  
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 398 TVLASSGIESDIKI 411
            ++AS+ +E+D  I
Sbjct: 295 NIIASAALENDKTI 308

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34  TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
           T + A    AS D  LRL        Y +   H+  V +V  +    ++ISGS D+ + +
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 88  WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
           W  K +   L+   GHND V Q +++P     DD   +  A + ++  A  L +  +E  
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
            +G H    + L   P    +  + G+DG +  ++L   A   ++T    D+
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 239

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34  TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
           T + A    AS D  LRL        Y +   H+  V +V  +    ++ISGS D+ + +
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 88  WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
           W  K +   L+   GHND V Q +++P     DD   +  A + ++  A  L +  +E  
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
            +G H    + L   P    +  + G+DG +  ++L   A   ++T    D+
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 239

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34  TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
           T + A    AS D  LRL        Y +   H+  V +V  +    ++ISGS D+ + +
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 88  WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
           W  K +   L+   GHND V Q +++P     DD   +  A + ++  A  L +  +E  
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
            +G H    + L   P    +  + G+DG +  ++L   A   ++T    D+
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 239

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34  TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
           T + A    AS D  LRL        Y +   H+  V +V  +    ++ISGS D+ + +
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 88  WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
           W  K +   L+   GHND V Q +++P     DD   +  A + ++  A  L +  +E  
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
            +G H    + L   P    +  + G+DG +  ++L   A   ++T    D+
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 239

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34  TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
           T + A    AS D  LRL        Y +   H+  V +V  +    ++ISGS D+ + +
Sbjct: 68  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 88  WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
           W  K +   L+   GHND V Q +++P     DD   +  A + ++  A  L +  +E  
Sbjct: 128 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
            +G H    + L   P    +  + G+DG +  ++L   A   ++T    D+
Sbjct: 186 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 233

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64  VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
           V T ++   G+ +  G  D    +++ KT     RV  +L+ H+G+           F D
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 153
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
           D  IVT + D       I    G +T     H G    L++ P +  +F +   D   + 
Sbjct: 154 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 210
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
           +D+R G   + FT    D          +NAI   P N N FA    D   RL+D+R   
Sbjct: 211 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 257
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
                   Q    +   N+I     GIT ++FS    LL++  D+F
Sbjct: 258 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 292

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64  VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
           V T ++   G+ +  G  D    +++ KT     RV  +L+ H+G+           F D
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 153
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
           D  IVT + D       I    G +T     H G    L++ P +  +F +   D   + 
Sbjct: 154 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 210
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
           +D+R G   + FT    D          +NAI   P N N FA    D   RL+D+R   
Sbjct: 211 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 257
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
                   Q    +   N+I     GIT ++FS    LL++  D+F
Sbjct: 258 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 292

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64  VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
           V T ++   G+ +  G  D    +++ KT     RV  +L+ H+G+           F D
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 153
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
           D  IVT + D       I    G +T     H G    L++ P +  +F +   D   + 
Sbjct: 154 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 210
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
           +D+R G   + FT    D          +NAI   P N N FA    D   RL+D+R   
Sbjct: 211 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 257
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
                   Q    +   N+I     GIT ++FS    LL++  D+F
Sbjct: 258 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 292

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64  VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
           V T ++   G+ +  G  D    +++ KT     RV  +L+ H+G+           F D
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 164
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
           D  IVT + D       I    G +T     H G    L++ P +  +F +   D   + 
Sbjct: 165 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 221
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
           +D+R G   + FT    D          +NAI   P N N FA    D   RL+D+R   
Sbjct: 222 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 268
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
                   Q    +   N+I     GIT ++FS    LL++  D+F
Sbjct: 269 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 303

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64  VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
           V T ++   G+ +  G  D    +++ KT     RV  +L+ H+G+           F D
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 153
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
           D  IVT + D       I    G +T     H G    L++ P +  +F +   D   + 
Sbjct: 154 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 210
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
           +D+R G   + FT    D          +NAI   P N N FA    D   RL+D+R   
Sbjct: 211 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 257
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
                   Q    +   N+I     GIT ++FS    LL++  D+F
Sbjct: 258 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 292

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 57  LDKHRGCVNTVSFNTDGDI-LISGSDDRRVILWDWKT-ERVKL---SFHSGHNDNVFQAK 111
           L  H+G  ++  +  D +  LI+GS D+  +LWD  T +R+ +    F SGH  +V    
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 112 IMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170
           I     +  I  +C    ++   +I  R     +    H+G  + +   P     F T  
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRA---VRTYHGHEGDINSVKFFPDGQR-FGTGS 268
Query: 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214
           +DG  + FD+RTG   +++   P D   N + +V   A +I  R
Sbjct: 269 DDGTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSISGR 311

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 34  TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
           T + A    AS D  LRL        Y +   H+  V +V  +     +ISGS D+ + +
Sbjct: 74  TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 88  WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
           W  K +   L+   GHND V Q +++P     DD   +  A + +   A  L +  +E  
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192
            +G H    + L   P    +  + G+DG +  ++L    A    + +
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIXLWNLAAKKAXYTLSAQ 237

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/356 (19%), Positives = 142/356 (39%), Gaps = 54/356 (15%)
Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
           L  HR  V  V F+    +++S S+D  + +WD++T   + +   GH D+V    I    
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSV--QDISFDH 160
Query: 117 DDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175
             + + +C+AD  ++   + +  G E  + +  H      ++I P   H+  +   D  +
Sbjct: 161 SGKLLASCSADMTIK---LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTI 216
Query: 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235
           + ++++TG   + FT       R ++ +V  N      ++  L A   +D+  R++ +  
Sbjct: 217 KMWEVQTGYCVKTFT-----GHREWVRMVRPN------QDGTLIASCSNDQTVRVWVV-- 263
Query: 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295
                       A   C   L     V +  ++++ +S    S   E     T+  G   
Sbjct: 264 ------------ATKECKAELREHRHV-VECISWAPESSY--SSISEATGSETKKSG--- 305
Query: 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355
            P P     +R +  +M    T             +      GH N   V+GV  F    
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG------------MCLMTLVGHDNW--VRGV-LFHSGG 350
Query: 356 EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
           ++++S +D   + +W  K    ++ + A  H V  ++ H  +  + +  ++  +K+
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
           H+G V ++SF  DG ++ISGS D+   +W   +    L     HN +V+ AK++ F++++
Sbjct: 103 HQGNVCSLSFQ-DG-VVISGSWDKTAKVWKEGSLVYNLQ---AHNASVWDAKVVSFSENK 157
Query: 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179
             +T +AD  ++   + +   V     G H      LA+       F +C  DGL++  D
Sbjct: 158 -FLTASADKTIK---LWQNDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVD 211
Query: 180 LRTG 183
             TG
Sbjct: 212 XHTG 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	100.0
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	100.0
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.97
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.97
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.97
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.95
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.92
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.91
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.9
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.88
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.88
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.87
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.76
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.69
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.67
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.65
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.61
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.59
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.58
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.58
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.54
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.54
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.52
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.52
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.51
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.5
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.46
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.41
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.39
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.33
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.33
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.32
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.31
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.25
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.18
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.15
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.08
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.07
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.05
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.05
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.02
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.98
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.95
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.89
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.87
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.87
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.85
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.83
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.77
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.73
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.69
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.68
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.63
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.62
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.62
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.59
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.54
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.53
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.51
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.5
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.49
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.42
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.3
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.29
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.23
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.19
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.03
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.98
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.96
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.93
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.89
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.81
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.69
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.67
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.65
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.57
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.54
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.5
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.48
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.42
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.42
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.4
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.38
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.36
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.32
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.3
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.27
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.23
3ott_A	758	Two-component system sensor histidine kinase; beta	97.13
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.1
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.09
3ott_A	758	Two-component system sensor histidine kinase; beta	97.05
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.04
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.98
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.9
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.88
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.87
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.62
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.52
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.44
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.44
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.4
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.0
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.84
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.71
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.22
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	94.63
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.32
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.19
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.05
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.18
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.52
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.05
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.97
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.16
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	82.8
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	82.18

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.7e-58  Score=434.49  Aligned_cols=424  Identities=13%  Similarity=0.155  Sum_probs=317.4

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccc-------------cccc----cccccccc----eEEe----eeeeEe
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTR-------------NFAL----RRRASEDL----VLRL----GIYAKL   57 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~-------------~~~~----~~~~~~~~----~~~~----~~~~~~   57 (458)
                      .+.|+|++++||+|+.|++|+|||+.+++....             .|++    ++++..+.    ...+    +....+
T Consensus        64 ~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l  143 (611)
T 1nr0_A           64 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL  143 (611)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC
T ss_pred             EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCccee
Confidence            467899999999999999999999976543211             1111    22222221    1221    344568


Q ss_pred             ecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712           58 DKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL  136 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~  136 (458)
                      .+|.+.|++++|+|++. +|++|+.|++|++||..+++....+ .+|...|.+++|+|  ++++|++++.|+.|++||+.
T Consensus       144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred             cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECC--CCCEEEEEECCCcEEEEECC
Confidence            89999999999999986 6999999999999999988877766 79999999999999  99999999999999999998


Q ss_pred             cccceeeeecc-------ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc---------------
Q 012712          137 ERGGVETKLLG-------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI---------------  194 (458)
Q Consensus       137 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------  194 (458)
                      +++....  +.       +|...|.+++|+|++ .+|++++.|++|++||+++++....+.....               
T Consensus       221 ~g~~~~~--~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (611)
T 1nr0_A          221 DGTKTGV--FEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL  297 (611)
T ss_dssp             TCCEEEE--CBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred             CCcEeee--eccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence            8776544  32       799999999999999 6899999999999999998876554432100               


Q ss_pred             --------------------CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          195 --------------------DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       195 --------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                                          ....+  |...|.+++|+|+ +++|++++.|+.|++||+.+++..              .
T Consensus       298 ~s~s~d~~i~~~~~~~~~~~~~~~g--h~~~v~~l~~spd-g~~l~s~s~D~~v~~Wd~~~~~~~--------------~  360 (611)
T 1nr0_A          298 VSISANGFINFVNPELGSIDQVRYG--HNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISN--------------R  360 (611)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECC--CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEE--------------E
T ss_pred             EEEeCCCcEEEEeCCCCCcceEEcC--CCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcee--------------e
Confidence                                00112  4557999999998 789999999999999999876532              1


Q ss_pred             ccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCC-CCccccccccccCCCCccccCCCCCCc---ccc
Q 012712          255 NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS-SPVSTRSEASEMGSDHTSAASPSTANT---DVR  330 (458)
Q Consensus       255 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  330 (458)
                      .....|...|.+++|++++.++..+.++.+++|+............ ...........+++++..++.......   ...
T Consensus       361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~  440 (611)
T 1nr0_A          361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG  440 (611)
T ss_dssp             CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred             ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence            1224577899999999988666555577999999876543221000 000001122234444433222110000   001


Q ss_pred             cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE--EEEeecCCceeeEEEecCCCCeEEEeecCCc
Q 012712          331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL--IRVIEADRHVVNCIEPHPHSTVLASSGIESD  408 (458)
Q Consensus       331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  408 (458)
                      . ...+. |..  .+.+++| +|||++|++|+.|++|++||+.+++.  +.. .+|...|++++|+|||++|++++.|++
T Consensus       441 ~-~~~~~-~~~--~v~~va~-spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~  514 (611)
T 1nr0_A          441 K-LTEVP-ISY--NSSCVAL-SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK  514 (611)
T ss_dssp             E-EEEEE-CSS--CEEEEEE-CTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             c-eeeee-cCC--CceEEEE-eCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCC
Confidence            1 11222 333  3788998 99999999999999999999987754  234 679999999999999999999999999


Q ss_pred             EEEecCCc-ccccc---cccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          409 IKILTPNA-ADRAT---LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       409 i~iw~~~~-~~~~~---~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      |++|++.+ ++...   ...|...|.+++|+|||++||+++.|++|++|+.
T Consensus       515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~  565 (611)
T 1nr0_A          515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM  565 (611)
T ss_dssp             EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence            99999987 54443   2348899999999999999999999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.8e-57  Score=428.51  Aligned_cols=377  Identities=14%  Similarity=0.200  Sum_probs=300.4

Q ss_pred             CCCCCCCCC-eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            3 DASNNNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         3 ~~~~~~~~~-~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      .+.|+|+++ +|++|+.|++|++||..++++.                     ..+.+|.+.|.+++|+|+|++||+++.
T Consensus       152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~---------------------~~l~~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK---------------------STFGEHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETTTBEEE---------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCeEe---------------------eeeccccCceEEEEECCCCCEEEEEEC
Confidence            456888886 5999999999999998866544                     458899999999999999999999999


Q ss_pred             CCeEEEEECCCcceeeeecc------CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee------------
Q 012712           82 DRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET------------  143 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~------------  143 (458)
                      |++|++||+.+++....+..      +|.+.|.+++|+|  ++++|++++.|++|++||+.+++....            
T Consensus       211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~  288 (611)
T 1nr0_A          211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL  288 (611)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred             CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence            99999999999888766633      7999999999999  999999999999999999987654321            


Q ss_pred             -----------------------------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712          144 -----------------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI  194 (458)
Q Consensus       144 -----------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  194 (458)
                                                   ..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....+.    
T Consensus       289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~----  363 (611)
T 1nr0_A          289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFP----  363 (611)
T ss_dssp             EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSS----
T ss_pred             EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecc----
Confidence                                         2245799999999999999 689999999999999999887654331    


Q ss_pred             CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc----CCC-CCC-CcCCC--------------
Q 012712          195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD----FGQ-PAD-YFCPP--------------  254 (458)
Q Consensus       195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~-~~~-~~~~~--------------  254 (458)
                         .+  +...+.+++|+++  ..+++++.|+.+++|+...........    +.. +.. .+.+.              
T Consensus       364 ---~~--h~~~v~~~~~s~~--~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~  436 (611)
T 1nr0_A          364 ---DV--HATMITGIKTTSK--GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI  436 (611)
T ss_dssp             ---CS--CSSCEEEEEECTT--SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred             ---cC--CcceEEEEEECCC--CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence               11  4557999999985  378899999999999987654322100    000 000 00000              


Q ss_pred             -----ccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712          255 -----NLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD  328 (458)
Q Consensus       255 -----~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (458)
                           .....+...+.+++|+|+|++|++++. +.|++||+....                                   
T Consensus       437 ~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-----------------------------------  481 (611)
T 1nr0_A          437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-----------------------------------  481 (611)
T ss_dssp             EETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-----------------------------------
T ss_pred             EeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-----------------------------------
Confidence                 000013456889999999999999985 479999987521                                   


Q ss_pred             cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC-CeEEEE--eecCCceeeEEEecCCCCeEEEeec
Q 012712          329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GELIRV--IEADRHVVNCIEPHPHSTVLASSGI  405 (458)
Q Consensus       329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~  405 (458)
                       ...... .+|...  |.+++| +|||++|++++.|++|++|++.+ ++++..  +.+|...|.+++|+|||++||+++.
T Consensus       482 -~~~~~~-~~h~~~--v~~v~f-spdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~  556 (611)
T 1nr0_A          482 -VSEVKT-IVHPAE--ITSVAF-SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL  556 (611)
T ss_dssp             -EEEEEE-EECSSC--EEEEEE-CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             -eeeeec-cCCCCc--eEEEEE-CCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC
Confidence             011122 456653  899999 99999999999999999999987 666554  3459999999999999999999999


Q ss_pred             CCcEEEecCCcccc---cccccc-cccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          406 ESDIKILTPNAADR---ATLPTN-IEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       406 d~~i~iw~~~~~~~---~~~~~~-~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      |++|++|++..+..   ..+.+| ...|.+++|+||++ |++++.|++|++|+.
T Consensus       557 D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             CCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            99999999987642   245577 78899999999999 999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.5e-56  Score=418.03  Aligned_cols=371  Identities=22%  Similarity=0.376  Sum_probs=314.5

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccc-----------ccc----ccccccccceEEe-----eeeeEeecCCCc
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTR-----------NFA----LRRRASEDLVLRL-----GIYAKLDKHRGC   63 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~-----------~~~----~~~~~~~~~~~~~-----~~~~~~~~h~~~   63 (458)
                      +.++|++++|++++.|+.|++||.. ++.+..           .++    .+++++.++..++     +.+..+.+|...
T Consensus       186 ~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~  264 (577)
T 2ymu_A          186 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS  264 (577)
T ss_dssp             EEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSC
T ss_pred             eeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCC
Confidence            4578999999999999999999975 554433           111    2566667776665     567788999999


Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET  143 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  143 (458)
                      |.+++|+|++++|++++.|+.|++|+.. ++....+ .+|...|.+++|+|  +++.|++++.|+.|++||..... .. 
T Consensus       265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~~~d~~i~~w~~~~~~-~~-  338 (577)
T 2ymu_A          265 VNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQH-LQ-  338 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSCE-EE-
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCe-eE-
Confidence            9999999999999999999999999964 5555555 78999999999999  99999999999999999976543 33 


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                       .+.+|...+.+++|+|++ ..+++++.|+.|++||. +++....+..          +...|.+++|+|+ +++|++++
T Consensus       339 -~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~~~----------~~~~v~~~~~s~d-g~~l~~~~  404 (577)
T 2ymu_A          339 -TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTG----------HSSSVRGVAFSPD-GQTIASAS  404 (577)
T ss_dssp             -EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEEEC----------CSSCEEEEEECTT-SSCEEEEE
T ss_pred             -EEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEecC----------CCCCeEEEEECCC-CCEEEEEe
Confidence             367899999999999999 68999999999999995 4444444432          4457999999998 78999999


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCC
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      .|+.|++||.....                ......|...|.+++|+|++++|++++. +.+++|+...           
T Consensus       405 ~d~~v~~~~~~~~~----------------~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-----------  457 (577)
T 2ymu_A          405 DDKTVKLWNRNGQL----------------LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-----------  457 (577)
T ss_dssp             TTSEEEEECTTCCE----------------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-----------
T ss_pred             CCCEEEEEeCCCCE----------------EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-----------
Confidence            99999999964321                2334567889999999999999999885 5799999643           


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE  382 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  382 (458)
                                                  +....+.+|...  |.+++| +|++++|++++.|+.|++||. +++++..+.
T Consensus       458 ----------------------------~~~~~~~~~~~~--v~~~~~-spd~~~las~~~d~~i~iw~~-~~~~~~~~~  505 (577)
T 2ymu_A          458 ----------------------------QLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLT  505 (577)
T ss_dssp             ----------------------------CEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             ----------------------------CEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence                                        345677788775  899998 999999999999999999995 788999999


Q ss_pred             cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          383 ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       383 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +|...|++++|+|++++||+++.|+.|++||........+.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus       506 ~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999999999999986655667889999999999999999999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.4e-54  Score=405.22  Aligned_cols=325  Identities=21%  Similarity=0.332  Sum_probs=279.1

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      +....+.+|.+.|.+++|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|  +++.|++++.|+.|+
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~-~~~~~~v~~v~~~~--d~~~l~~~~~d~~i~  287 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVNGVAFRP--DGQTIASASDDKTVK  287 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEE
T ss_pred             cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEE-ecCCCCEEEEEEcC--CCCEEEEEeCCCEEE
Confidence            4567788999999999999999999999999999999964 5555555 78999999999999  999999999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      +|+.. ++...  .+.+|...|.+++|+|++ ..+++++.|+.|++||+..... ..+..          +...+.+++|
T Consensus       288 ~w~~~-~~~~~--~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~-~~~~~----------~~~~v~~~~~  352 (577)
T 2ymu_A          288 LWNRN-GQLLQ--TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHL-QTLTG----------HSSSVWGVAF  352 (577)
T ss_dssp             EEETT-SCEEE--EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEE-EEECC----------CSSCEEEEEE
T ss_pred             EEeCC-CcEEE--EEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCee-EEEeC----------CCCCEEEEEE
Confidence            99964 33333  378899999999999999 6899999999999999865433 22221          4457999999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEcc
Q 012712          212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQD  290 (458)
Q Consensus       212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~  290 (458)
                      +|+ +.++++++.|+.|++||.....                ......|...|.+++|+|++++|++++. +.|++|+..
T Consensus       353 s~~-g~~l~~~~~dg~v~~~~~~~~~----------------~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~  415 (577)
T 2ymu_A          353 SPD-GQTIASASDDKTVKLWNRNGQL----------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  415 (577)
T ss_dssp             CTT-SSEEEEEETTSEEEEEETTCCE----------------EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             CCC-CCEEEEEeCCCEEEEEcCCCCE----------------EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            998 7899999999999999964321                2234457889999999999999999885 579999954


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                                                             .+....+.+|...  |.+++| +|++++|++++.|+.|++|
T Consensus       416 ---------------------------------------~~~~~~~~~~~~~--v~~~~~-s~d~~~l~~~~~d~~v~~w  453 (577)
T 2ymu_A          416 ---------------------------------------GQLLQTLTGHSSS--VWGVAF-SPDDQTIASASDDKTVKLW  453 (577)
T ss_dssp             ---------------------------------------CCEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEEE
T ss_pred             ---------------------------------------CCEEEEecCCCCC--eEEEEE-CCCCCEEEEEcCCCEEEEE
Confidence                                                   2345667778775  899998 9999999999999999999


Q ss_pred             EecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCce
Q 012712          371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSI  450 (458)
Q Consensus       371 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i  450 (458)
                      |. +++.+..+.+|...|.+++|+|++++|++++.|+.|++|+........+.+|...|++++|+|||++|++++.|+.|
T Consensus       454 ~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          454 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             ET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             EC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence            96 67888999999999999999999999999999999999998766666888999999999999999999999999999


Q ss_pred             EEEEE
Q 012712          451 LLFEW  455 (458)
Q Consensus       451 ~~w~~  455 (458)
                      ++||.
T Consensus       533 ~lwd~  537 (577)
T 2ymu_A          533 KLWNR  537 (577)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            99984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-51  Score=402.39  Aligned_cols=418  Identities=8%  Similarity=0.011  Sum_probs=294.9

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.|+|++++||+|+.||.|+||+..+++..                     . ...|..+|.+++|+| |++|++++.|
T Consensus        22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------~-~~~~~~~V~~l~fsp-g~~L~S~s~D   78 (902)
T 2oaj_A           22 AAAFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------I-KLEDRSAIKEMRFVK-GIYLVVINAK   78 (902)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEECSTTCEEE---------------------E-ECSSCCCEEEEEEET-TTEEEEEETT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCcEEE---------------------E-EcCCCCCEEEEEEcC-CCEEEEEECc
Confidence            4678999999999999999999998865433                     1 134788999999999 8899999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee---------eeccccccce
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---------KLLGKHQGRA  153 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~---------~~~~~~~~~v  153 (458)
                      ++|++||+.+++.+..+  .|...|++++|+|  ++++|++|+.||.|++||+.++.....         ..+.+|...|
T Consensus        79 ~~v~lWd~~~~~~~~~~--~~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V  154 (902)
T 2oaj_A           79 DTVYVLSLYSQKVLTTV--FVPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI  154 (902)
T ss_dssp             CEEEEEETTTCSEEEEE--ECSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred             CeEEEEECCCCcEEEEE--cCCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence            99999999999888777  3778999999999  999999999999999999987764311         1246789999


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC--------cceeecceEEEEECCCCCcEEEEecCC
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--------NYMTVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      .+++|+|++...+++++.||.| +||+++++....+..+......        ...+...|.+++|+|+ +.+|++++.|
T Consensus       155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~lasgs~D  232 (902)
T 2oaj_A          155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHED  232 (902)
T ss_dssp             CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEEEETT
T ss_pred             EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEEEECC
Confidence            9999999765789999999999 9999998877666432100000        0012357999999998 7899999999


Q ss_pred             CeEEEEecCCCccCCCccC-----CCCCCCcCCCccccccccceeEEEeC----CCC-cEEEEecCC------cEEEEEc
Q 012712          226 EYTRLYDIRKYKWDGSTDF-----GQPADYFCPPNLIGDEQVGITGLAFS----DQS-ELLVSYNDE------FIYLFTQ  289 (458)
Q Consensus       226 g~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~-~~l~~~~~~------~i~i~~~  289 (458)
                      |.|++||+++++......+     ..+... .+. -...+...|.+++|+    |++ .+|++++.+      .+.+|++
T Consensus       233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~-~~~-~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          233 NSLVFWDANSGHMIMARTVFETEINVPQPD-YIR-DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             CCEEEEETTTCCEEEEECSSCSCTTSCCTT-CCC-CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEeecccccCCCCCc-CCC-CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            9999999988764321000     000000 000 000123456777773    332 345555322      4555553


Q ss_pred             -----------------------------------------------------------------------cCCCCCCC-
Q 012712          290 -----------------------------------------------------------------------DMGLGPNP-  297 (458)
Q Consensus       290 -----------------------------------------------------------------------~~~~~~~~-  297 (458)
                                                                                             .++..... 
T Consensus       311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~  390 (902)
T 2oaj_A          311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA  390 (902)
T ss_dssp             EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred             CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence                                                                                   22110000 


Q ss_pred             ------CCCCCcccc--------------------------------ccccccCCCCccccCCCCCCccc------ccCc
Q 012712          298 ------PPSSPVSTR--------------------------------SEASEMGSDHTSAASPSTANTDV------RIAP  333 (458)
Q Consensus       298 ------~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~  333 (458)
                            +..+.....                                .....+++++..++....+....      ....
T Consensus       391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~  470 (902)
T 2oaj_A          391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ  470 (902)
T ss_dssp             GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred             ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence                  000000000                                00001123333333322222111      1100


Q ss_pred             --eee----c-----CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC---------------------------
Q 012712          334 --QVY----K-----GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---------------------------  375 (458)
Q Consensus       334 --~~~----~-----~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------------  375 (458)
                        ..+    .     +|..  .|.+++| +|||++||+|+.||+|+|||+.++                           
T Consensus       471 ~~~~~~~~l~~~~~~~h~~--~V~svaf-spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (902)
T 2oaj_A          471 DNASFEVNLSRTLNKAKEL--AVDKISF-AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN  547 (902)
T ss_dssp             TTBCEEEEHHHHTTCSSSC--CEEEEEE-ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred             CCceEEeechhhcCCCCCC--ceeEEEe-cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence              111    1     4554  4999999 999999999999999999999876                           


Q ss_pred             ------------------eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc------ccc-cccccEE
Q 012712          376 ------------------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA------TLP-TNIEQVC  430 (458)
Q Consensus       376 ------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~------~~~-~~~~~v~  430 (458)
                                        +++..+.+|.+.|++++||||| +||+|+.|++|+|||+.+....      .+. +|...|+
T Consensus       548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~  626 (902)
T 2oaj_A          548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVT  626 (902)
T ss_dssp             CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEE
T ss_pred             cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceE
Confidence                              2467888999999999999999 9999999999999999876542      343 7888999


Q ss_pred             EEEEe-----cCC---cEEEeeecCCceEEEEE
Q 012712          431 FSIYS-----ADY---WWSKSQNFSCSILLFEW  455 (458)
Q Consensus       431 ~~~~s-----~d~---~~l~s~~~d~~i~~w~~  455 (458)
                      +++||     |||   .+|++|+.|++|++||.
T Consensus       627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          627 CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            99999     886   89999999999999997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.5e-51  Score=387.11  Aligned_cols=396  Identities=16%  Similarity=0.180  Sum_probs=311.0

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEcccc----ccccccccccccccccceEEeeeeeEeecCCCc-eEEEEEec--CCC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELG----QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNT--DGD   74 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~--~~~   74 (458)
                      -.+.|+|++++|++++ ++.|+|||++++    +..                     ..+.+|.+. |++++|+|  +++
T Consensus        22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~---------------------~~~~~h~~~~v~~~~~sp~~~~~   79 (615)
T 1pgu_A           22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV---------------------VQFTGHGSSVVTTVKFSPIKGSQ   79 (615)
T ss_dssp             CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE---------------------EEECTTTTSCEEEEEECSSTTCC
T ss_pred             eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc---------------------eEEecCCCceEEEEEECcCCCCC
Confidence            3567899999999999 889999999977    444                     458899999 99999999  999


Q ss_pred             EEEEecCCCeEEEEECCCc--------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC----CcEEEeeccccccee
Q 012712           75 ILISGSDDRRVILWDWKTE--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVE  142 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~vw~~~~~~~~~  142 (458)
                      +||+++.|+.|++||+.++        +....+ ..|...|.+++|+|  ++++|++++.+    +.|.+||  .++...
T Consensus        80 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~  154 (615)
T 1pgu_A           80 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLG  154 (615)
T ss_dssp             EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEE
T ss_pred             EEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcce
Confidence            9999999999999999755        444444 67999999999999  99999999987    7899998  344443


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeec---ceEEEEECCCCCcEE
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV---NLNAIAIDPRNANLF  219 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l  219 (458)
                      .  +.+|...|.+++|+|+++.++++++.|+.|++||+++++....+..          +..   .|.+++|+|++++++
T Consensus       155 ~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l  222 (615)
T 1pgu_A          155 E--VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------HHKQGSFVRDVEFSPDSGEFV  222 (615)
T ss_dssp             E--CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------SSCTTCCEEEEEECSTTCCEE
T ss_pred             e--eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------cCCCCceEEEEEECCCCCCEE
Confidence            3  7889999999999999965899999999999999998877666542          333   699999999746899


Q ss_pred             EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc---ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCC
Q 012712          220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG---DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP  295 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~  295 (458)
                      ++++.||.|++||+++++....              +..   .|...|.+++|+ ++++|++++ ++.+++||+.++...
T Consensus       223 ~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          223 ITVGSDRKISCFDGKSGEFLKY--------------IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             EEEETTCCEEEEETTTCCEEEE--------------CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEeCCCeEEEEECCCCCEeEE--------------ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            9999999999999988763221              212   578899999999 999999888 558999999876433


Q ss_pred             CCCCCCCccc---------------------------------------------c------------------------
Q 012712          296 NPPPSSPVST---------------------------------------------R------------------------  306 (458)
Q Consensus       296 ~~~~~~~~~~---------------------------------------------~------------------------  306 (458)
                      ..+.......                                             .                        
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~  367 (615)
T 1pgu_A          288 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSM  367 (615)
T ss_dssp             EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEE
T ss_pred             EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhh
Confidence            2221110000                                             0                        


Q ss_pred             -------ccccccCCCCccccCCCCC------------------------------------------------------
Q 012712          307 -------SEASEMGSDHTSAASPSTA------------------------------------------------------  325 (458)
Q Consensus       307 -------~~~~~~~~~~~~~~~~~~~------------------------------------------------------  325 (458)
                             .....+ +++..++....+                                                      
T Consensus       368 ~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (615)
T 1pgu_A          368 HQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN  446 (615)
T ss_dssp             ECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             cCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccC
Confidence                   000000 001111100000                                                      


Q ss_pred             --------------------Cc------ccccCc-eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712          326 --------------------NT------DVRIAP-QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       326 --------------------~~------~~~~~~-~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  378 (458)
                                          ..      ...... ..+.+|..  .|.+++| +|++++|++++.||.|++||+.+++++
T Consensus       447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~  523 (615)
T 1pgu_A          447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA--KPSYISI-SPSETYIAAGDVMGKILLYDLQSREVK  523 (615)
T ss_dssp             SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS--CEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccC--ceEEEEE-CCCCCEEEEcCCCCeEEEeeCCCCcce
Confidence                                00      000000 33344555  4889998 999999999999999999999999999


Q ss_pred             EEeec-CCceeeEEEecC----------CCCeEEEeecCCcEEEecCCcc-ccc-ccccccccEEEEEEecCCcEEEeee
Q 012712          379 RVIEA-DRHVVNCIEPHP----------HSTVLASSGIESDIKILTPNAA-DRA-TLPTNIEQVCFSIYSADYWWSKSQN  445 (458)
Q Consensus       379 ~~~~~-~~~~v~~~~~s~----------~~~~l~s~~~d~~i~iw~~~~~-~~~-~~~~~~~~v~~~~~s~d~~~l~s~~  445 (458)
                      ..+.+ |...|++++|+|          ++++|++++.||.|++|++.++ +.. .+..|...|++++|+|++. |++++
T Consensus       524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~  602 (615)
T 1pgu_A          524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG  602 (615)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred             eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence            99988 999999999999          9999999999999999999986 343 6778999999999999999 99999


Q ss_pred             cCCceEEEEEe
Q 012712          446 FSCSILLFEWL  456 (458)
Q Consensus       446 ~d~~i~~w~~~  456 (458)
                      .|+.|++|+.-
T Consensus       603 ~d~~v~iw~~~  613 (615)
T 1pgu_A          603 ADACIKRWNVV  613 (615)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCceEEEEeee
Confidence            99999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-51  Score=366.53  Aligned_cols=308  Identities=16%  Similarity=0.244  Sum_probs=264.4

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      ...+.+|.++|++++|+|++++|++|+.|++|++||+.+++....+ .+|...|.+++|+|  ++++|++|+.|+.|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~--~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDH--SGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcC--CCCEEEEEeCCCeEEEE
Confidence            5578899999999999999999999999999999999999887777 79999999999999  99999999999999999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      |+.+.+.+..  +.+|...|.+++|+|++ ..|++++.|+.|++||++++.+...+..          +...+.++.++|
T Consensus       178 d~~~~~~~~~--~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~----------h~~~v~~~~~~~  244 (410)
T 1vyh_C          178 DFQGFECIRT--MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTG----------HREWVRMVRPNQ  244 (410)
T ss_dssp             ETTSSCEEEC--CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEECT
T ss_pred             eCCCCceeEE--EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeC----------CCccEEEEEECC
Confidence            9988776655  78999999999999999 6899999999999999999988776653          445789999999


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCC
Q 012712          214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL  293 (458)
Q Consensus       214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~  293 (458)
                      + +.++++|+.|+.|++||+++.+.               ......|...|.+++|+|++.+....              
T Consensus       245 ~-g~~l~s~s~D~~v~vwd~~~~~~---------------~~~~~~h~~~v~~~~~~~~~~~~~~~--------------  294 (410)
T 1vyh_C          245 D-GTLIASCSNDQTVRVWVVATKEC---------------KAELREHRHVVECISWAPESSYSSIS--------------  294 (410)
T ss_dssp             T-SSEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECCSCGGGGGG--------------
T ss_pred             C-CCEEEEEcCCCeEEEEECCCCce---------------eeEecCCCceEEEEEEcCcccccchh--------------
Confidence            8 78999999999999999987653               22344577889999999986421100              


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                                                               ...+      ...... .+.|.+|++|+.|+.|++||+.
T Consensus       295 -----------------------------------------~~~~------~~~~~~-~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          295 -----------------------------------------EATG------SETKKS-GKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             -----------------------------------------GCCS------CC--------CCEEEEEETTSEEEEEETT
T ss_pred             -----------------------------------------hhcc------cccccc-CCCCCEEEEEeCCCeEEEEECC
Confidence                                                     0000      001112 4568899999999999999999


Q ss_pred             CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712          374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILL  452 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~  452 (458)
                      +++++..+.+|...|.+++|+|++++|++++.|+.|++||+.++++. .+..|...|++++|+|++.+|++|+.|+.|++
T Consensus       327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            99999999999999999999999999999999999999999887665 66788899999999999999999999999999


Q ss_pred             EEE
Q 012712          453 FEW  455 (458)
Q Consensus       453 w~~  455 (458)
                      |+.
T Consensus       407 W~~  409 (410)
T 1vyh_C          407 WEC  409 (410)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            984

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.3e-51  Score=422.15  Aligned_cols=410  Identities=15%  Similarity=0.174  Sum_probs=316.3

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.|+|++++|++|+.||.|+|||+.+++.+                     ..+.+|.+.|.+++|+|++++||+++.|
T Consensus       620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          620 HACFSQDGQRIASCGADKTLQVFKAETGEKL---------------------LDIKAHEDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEE---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCCEE---------------------EEeccCCCCEEEEEEecCCCEEEEEeCC
Confidence            3568999999999999999999999988766                     4578999999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      +.|++||+.+++.+..+ .+|...|.+++|+|..++..+++++.||.|++||+.+++....  +.+|...|.+++|+|++
T Consensus       679 ~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~sp~~  755 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT--MFGHTNSVNHCRFSPDD  755 (1249)
T ss_dssp             SEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE--ECCCSSCEEEEEECSST
T ss_pred             CeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe--ecCCCCCEEEEEEecCC
Confidence            99999999999988887 7899999999999944455899999999999999998887655  77899999999999999


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCC----------------------------------------C-----
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD----------------------------------------R-----  197 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------------------------------~-----  197 (458)
                       ..+++++.||.|++||+++++....+.......                                        .     
T Consensus       756 -~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~  834 (1249)
T 3sfz_A          756 -ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE  834 (1249)
T ss_dssp             -TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred             -CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence             689999999999999998876544332111000                                        0     


Q ss_pred             CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712          198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV  277 (458)
Q Consensus       198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (458)
                      ....+...+.+++|+|+ +.++++++.||.|++||+.++..               ......|...|.+++|+|+|++|+
T Consensus       835 ~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~  898 (1249)
T 3sfz_A          835 IHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRLK---------------VADCRGHLSWVHGVMFSPDGSSFL  898 (1249)
T ss_dssp             EECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCce---------------eeecCCCccceEEEEECCCCCEEE
Confidence            00013457889999997 68999999999999999987653               233456788999999999999999


Q ss_pred             Eec-CCcEEEEEccCCCCCCCCCCCC-----------------------------------ccccccccccCCCCccccC
Q 012712          278 SYN-DEFIYLFTQDMGLGPNPPPSSP-----------------------------------VSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       278 ~~~-~~~i~i~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~  321 (458)
                      +++ ++.+++|++.............                                   .........+++++..++.
T Consensus       899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~  978 (1249)
T 3sfz_A          899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF  978 (1249)
T ss_dssp             EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred             EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence            988 5589999976432111110000                                   0001112234444444443


Q ss_pred             CCCCC------cccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec----------------------
Q 012712          322 PSTAN------TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK----------------------  373 (458)
Q Consensus       322 ~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~----------------------  373 (458)
                      ...+.      .........+.+|...  |.+++| +|+|++|++++.||.|++||+.                      
T Consensus       979 g~~~g~i~i~d~~~~~~~~~~~~h~~~--v~~l~~-s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~ 1055 (1249)
T 3sfz_A          979 GDEDGAIKIIELPNNRVFSSGVGHKKA--VRHIQF-TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD 1055 (1249)
T ss_dssp             EETTSCCEEEETTTTSCEEECCCCSSC--CCCEEE-CSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSS
T ss_pred             EcCCCCEEEEEcCCCceeeecccCCCc--eEEEEE-CCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence            32221      1123344455566553  667776 7777777777777666666654                      


Q ss_pred             ------------------CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEE
Q 012712          374 ------------------GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIY  434 (458)
Q Consensus       374 ------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~  434 (458)
                                        +++.+..+.+|.+.|.+++|+|++++|++++.|++|++|++.+++.. .+..|...|++++|
T Consensus      1056 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~ 1135 (1249)
T 3sfz_A         1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135 (1249)
T ss_dssp             SEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEE
T ss_pred             CcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEE
Confidence                              44455566778889999999999999999999999999999988665 66788999999999


Q ss_pred             ecCCcEEEeeecCCceEEEEEe
Q 012712          435 SADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       435 s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +|||++|++++.||.|++||.-
T Consensus      1136 s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A         1136 SLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp             CSSSSEEEEEETTSCCCEEESS
T ss_pred             CCCCCEEEEEeCCCEEEEEECC
Confidence            9999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-49  Score=349.02  Aligned_cols=293  Identities=18%  Similarity=0.277  Sum_probs=253.0

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      ++..+++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++.+..+ ..|...|.+++|+|  ++++|++++.|+.|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~s~~~d~~v  121 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAP--SGNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECT--TSSEEEEEETTCEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECC--CCCEEEEEeCCCeE
Confidence            4567789999999999999999999999999999999999999887777 68999999999999  99999999999999


Q ss_pred             EEeecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          131 RHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       131 ~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      ++|++.+...  .....+.+|...|.++.|++++ . +++++.|+.|++||+++++....+..          +...|.+
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s~s~d~~i~~wd~~~~~~~~~~~~----------h~~~v~~  189 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVTSSGDTTCALWDIETGQQTTTFTG----------HTGDVMS  189 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-E-EEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCC-c-EEEEECCCcEEEEECCCCcEEEEEcC----------CCCceEE
Confidence            9999987542  2234477899999999999987 4 88999999999999999887666542          4457999


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF  287 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~  287 (458)
                      ++|+|+ +.++++|+.|+.|++||+++++.               ......|...|.+++|+|++++|++++ ++.|++|
T Consensus       190 ~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw  253 (340)
T 1got_B          190 LSLAPD-TRLFVSGACDASAKLWDVREGMC---------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             EEECTT-SSEEEEEETTSCEEEEETTTCSE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEECCC-CCEEEEEeCCCcEEEEECCCCee---------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            999997 78999999999999999987653               233456788999999999999999998 5589999


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                      |+.+.                                      .....+..+.....+.+++| +|+|++|++|+.||.|
T Consensus       254 d~~~~--------------------------------------~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~g~~d~~i  294 (340)
T 1got_B          254 DLRAD--------------------------------------QELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNC  294 (340)
T ss_dssp             ETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETTSEE
T ss_pred             ECCCC--------------------------------------cEEEEEccCCcccceEEEEE-CCCCCEEEEECCCCeE
Confidence            98763                                      22222322222224889998 9999999999999999


Q ss_pred             EEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       368 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|+.|+|||
T Consensus       295 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.7e-50  Score=346.42  Aligned_cols=291  Identities=21%  Similarity=0.314  Sum_probs=252.4

Q ss_pred             eeeEeecCCCceEEEEEecC----CCEEEEecCCCeEEEEECCCcceeee-eccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           53 IYAKLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      +.+.+++|.+.|++++|+|+    +.+|+||+.|++|+||++..++.... .+.+|...|.+++|+|  ++..+++++.|
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~--~~~~l~s~s~D  101 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLPIAASSSLD  101 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS--SSSEEEEEETT
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC--CCCEEEEEeCC
Confidence            34567899999999999985    57999999999999999987654322 2479999999999999  99999999999


Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      +.|++||+.+++.+..  +..|...+.+++|+|++ .+|++++.|+.|++||+++++....+..          +...+.
T Consensus       102 ~~i~lWd~~~~~~~~~--~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~----------~~~~v~  168 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKS--IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDT----------RGKFIL  168 (321)
T ss_dssp             SEEEEEETTTTEEEEE--EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEEC----------SSSCEE
T ss_pred             CcEEEEECCCCCEEEE--EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecC----------CCceEE
Confidence            9999999998877655  67788899999999999 6899999999999999999887665543          334689


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYL  286 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i  286 (458)
                      +++|+|+ +++|++|+.||.|++||+++++..               .....|..+|.+++|+|++++|++++. +.|++
T Consensus       169 ~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~---------------~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~i  232 (321)
T 3ow8_A          169 SIAYSPD-GKYLASGAIDGIINIFDIATGKLL---------------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI  232 (321)
T ss_dssp             EEEECTT-SSEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             EEEECCC-CCEEEEEcCCCeEEEEECCCCcEE---------------EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEE
Confidence            9999998 789999999999999999887532               234457889999999999999999985 58999


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR  366 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~  366 (458)
                      ||+.+                                      ......+.+|...  |.+++| +|++++|++++.|++
T Consensus       233 wd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          233 YDVQH--------------------------------------ANLAGTLSGHASW--VLNVAF-CPDDTHFVSSSSDKS  271 (321)
T ss_dssp             EETTT--------------------------------------CCEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSC
T ss_pred             EECCC--------------------------------------cceeEEEcCCCCc--eEEEEE-CCCCCEEEEEeCCCc
Confidence            99976                                      3445677888875  899998 999999999999999


Q ss_pred             EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      |++||+.+++++.++.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus       272 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          272 VKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999963

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-50  Score=355.16  Aligned_cols=290  Identities=16%  Similarity=0.187  Sum_probs=235.5

Q ss_pred             ecCCCceEEEEEecCCCEEEEecC------CCeEEEEECCCcceeeee---ccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           58 DKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      .+|++.|++++|||||++||+|+.      |+.|++|+..++.....+   ..+|...|.+++|+|  ++. +++++.||
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--d~~-~l~~s~dg  115 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS--EKG-ILVASDSG  115 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET--TTE-EEEEETTS
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC--CCC-EEEEECCC
Confidence            479999999999999999999997      788999998776543322   246889999999999  876 45677899


Q ss_pred             cEEEeecccccceee--eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          129 QVRHAQILERGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      .|++||+.+++....  ....+|...|++++|+|++ .+|++++.|+.|++||+++++....+..          +...|
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~----------h~~~v  184 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNA----------HSSEV  184 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCE
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCCE
Confidence            999999988765432  2345799999999999999 6899999999999999999887766653          45579


Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL  286 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i  286 (458)
                      .+++|+|++..++++++.|+.|++||+++++....                                             
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~---------------------------------------------  219 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR---------------------------------------------  219 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---------------------------------------------
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeee---------------------------------------------
Confidence            99999998667899999999999999987642110                                             


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCC
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCG  365 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg  365 (458)
                                                                     ..+..+..  .+.+++| +|+ +++|++|+.|+
T Consensus       220 -----------------------------------------------~~~~~~~~--~v~~v~~-sp~~~~~la~g~~d~  249 (357)
T 4g56_B          220 -----------------------------------------------IDFCASDT--IPTSVTW-HPEKDDTFACGDETG  249 (357)
T ss_dssp             -----------------------------------------------CCCTTCCS--CEEEEEE-CTTSTTEEEEEESSS
T ss_pred             -----------------------------------------------eeeccccc--cccchhh-hhcccceEEEeeccc
Confidence                                                           00011111  2678888 887 56889999999


Q ss_pred             eEEEEEecCCeEEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcccccccccccccEEEEEEec-CCcEEEe
Q 012712          366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSA-DYWWSKS  443 (458)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s  443 (458)
                      .|++||+.+++++..+.+|...|++++|+|++ ++||+++.|++|+|||+.+++.....+|...|++++|+| |+.+|++
T Consensus       250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred             ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence            99999999999999999999999999999987 579999999999999999999888889999999999999 7899999


Q ss_pred             eecCCceEEEEEe
Q 012712          444 QNFSCSILLFEWL  456 (458)
Q Consensus       444 ~~~d~~i~~w~~~  456 (458)
                      ++.|++|++|+.-
T Consensus       330 ~s~Dg~v~iW~~~  342 (357)
T 4g56_B          330 VGWDHKVLHHHLP  342 (357)
T ss_dssp             EETTSCEEEEECC
T ss_pred             EcCCCeEEEEECC
Confidence            9999999999963

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.3e-50  Score=411.03  Aligned_cols=426  Identities=19%  Similarity=0.237  Sum_probs=336.1

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEcccccccccc-----------ccc------cccccccceEEe------eeeeEeec
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRN-----------FAL------RRRASEDLVLRL------GIYAKLDK   59 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~-----------~~~------~~~~~~~~~~~~------~~~~~~~~   59 (458)
                      .+.|+|++++|++|+.|+.|+|||+.+++.+...           |++      +++++.|+..++      +....+.+
T Consensus       662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  741 (1249)
T 3sfz_A          662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG  741 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence            4568999999999999999999999999877552           111      556667776655      46678889


Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeee-----------------------------------------
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLS-----------------------------------------   98 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------------------------------------   98 (458)
                      |.+.|++++|+|++++|++++.||.|++||+.+++....                                         
T Consensus       742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v  821 (1249)
T 3sfz_A          742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV  821 (1249)
T ss_dssp             CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred             CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence            999999999999999999999999999999876643222                                         


Q ss_pred             -------------eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712           99 -------------FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV  165 (458)
Q Consensus        99 -------------~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  165 (458)
                                   +..+|...|.+++|+|  ++..+++++.||.|++|++.++.....  +.+|...|.+++|+|++ ..
T Consensus       822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg-~~  896 (1249)
T 3sfz_A          822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSP--YDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVMFSPDG-SS  896 (1249)
T ss_dssp             EEEETTTCCEEEEEECSSSSCCCEEEECS--STTEEEEECSSSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SE
T ss_pred             EEEEecCCCceeEEcCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeee--cCCCccceEEEEECCCC-CE
Confidence                         1226788999999999  999999999999999999988776654  78899999999999999 68


Q ss_pred             EEEecCCCeEEEEeCCCCCcc-----------------------------------------------c-----------
Q 012712          166 FYTCGEDGLVQHFDLRTGAAT-----------------------------------------------E-----------  187 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~~~-----------------------------------------------~-----------  187 (458)
                      +++++.||.|++||+.+....                                               .           
T Consensus       897 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l  976 (1249)
T 3sfz_A          897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYV  976 (1249)
T ss_dssp             EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEE
T ss_pred             EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEE
Confidence            999999999999996531000                                               0           


Q ss_pred             ----------eeeecccCC-CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712          188 ----------LFTCRPIDD-RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL  256 (458)
Q Consensus       188 ----------~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  256 (458)
                                .+....... .....+...|.+++|+|+ +.++++++.||.|++||+.+++..                .
T Consensus       977 ~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~----------------~ 1039 (1249)
T 3sfz_A          977 AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYV----------------F 1039 (1249)
T ss_dssp             EEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEE----------------C
T ss_pred             EEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceE----------------E
Confidence                      000000000 000114557899999998 789999999999999999887632                2


Q ss_pred             ccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC------cccc
Q 012712          257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN------TDVR  330 (458)
Q Consensus       257 ~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  330 (458)
                      ...|...+.+++|+|++.+++.+.++.+++||+.++.....+..+...  .....+++++..++....+.      ....
T Consensus      1040 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A         1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT--VLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp             CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC--CCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred             EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc--EEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence            335678999999999988777777889999999988765554433322  23345666766665544432      2334


Q ss_pred             cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe---------ecCCceeeEEEecCCCCeEE
Q 012712          331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI---------EADRHVVNCIEPHPHSTVLA  401 (458)
Q Consensus       331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~  401 (458)
                      .....+.+|...  |.+++| +|+|++|++|+.||.|++||+.+++.+..+         ..|.+.|++++|+||+++|+
T Consensus      1118 ~~~~~l~~h~~~--v~~~~~-s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 1194 (1249)
T 3sfz_A         1118 SPLHELKGHNGC--VRCSAF-SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV 1194 (1249)
T ss_dssp             SCSBCCCCCSSC--EEEEEE-CSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEE
T ss_pred             ceeeeeccCCCc--EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEE
Confidence            566777888875  899999 999999999999999999999998877655         57889999999999999999


Q ss_pred             EeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712          402 SSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLV  457 (458)
Q Consensus       402 s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~  457 (458)
                      +++  |.|++||+.+++.. .+..|...|.+++|+|||.+|++++.||.|++|+.++
T Consensus      1195 s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A         1195 SAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp             EES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCCC
T ss_pred             ECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeecC
Confidence            886  89999999988766 5566888899999999999999999999999999753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-49  Score=344.91  Aligned_cols=287  Identities=17%  Similarity=0.192  Sum_probs=249.9

Q ss_pred             cCCCcceeEEEEccC--CCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712          101 SGHNDNVFQAKIMPF--TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF  178 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~--~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  178 (458)
                      .+|.+.|++++|+|.  .++.+|++|+.|++|++|++...+......+.+|...|.+++|+|++ .++++++.|+.|++|
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLW  107 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEE
Confidence            689999999999971  13568999999999999999877655555588999999999999999 689999999999999


Q ss_pred             eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712          179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      |+++++....+..          +...+.+++|+|+ +++|++++.+|.|++||+++.+..               ....
T Consensus       108 d~~~~~~~~~~~~----------~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~~~~~---------------~~~~  161 (321)
T 3ow8_A          108 DLENGKQIKSIDA----------GPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESGKKE---------------YSLD  161 (321)
T ss_dssp             ETTTTEEEEEEEC----------CTTCCCCEEECTT-SSEEEEECTTSEEEEEETTTCSEE---------------EEEE
T ss_pred             ECCCCCEEEEEeC----------CCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCCCcee---------------EEec
Confidence            9999987766653          3346788999998 789999999999999999876532               2233


Q ss_pred             ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712          259 DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK  337 (458)
Q Consensus       259 ~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (458)
                      .+...+.+++|+|++++|++++ ++.|++||+.+                                      .+....+.
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--------------------------------------~~~~~~~~  203 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--------------------------------------GKLLHTLE  203 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------------------------------TEEEEEEC
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC--------------------------------------CcEEEEEc
Confidence            4567899999999999999998 55899999987                                      34566777


Q ss_pred             CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      +|...  |.+++| +|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus       204 ~h~~~--v~~l~~-spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          204 GHAMP--IRSLTF-SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             CCSSC--CCEEEE-CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ccCCc--eeEEEE-cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            88775  899999 999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          418 DRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       418 ~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ++. .+..|...|.+++|+|+|.+|++++.|+.|++||.
T Consensus       281 ~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            765 66789999999999999999999999999999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.8e-49  Score=341.24  Aligned_cols=295  Identities=17%  Similarity=0.271  Sum_probs=252.1

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      ++++.+++.+|.+.|.+++|+|++++|++++.|++|++||+.++..+..+ ..|..+|.+++|+|  ++++|++++.|+.
T Consensus         2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~s~d~~   78 (304)
T 2ynn_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFR   78 (304)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred             cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeC--CCCEEEEECCCCE
Confidence            34567789999999999999999999999999999999999999887777 78999999999999  9999999999999


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc-ceeeecccCCCCcceeecceEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      |++||+.+++.+..  +.+|...|.+++|+|++ .+|++++.|++|++||++++... ..+.        +  +...|.+
T Consensus        79 i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~--------~--h~~~v~~  145 (304)
T 2ynn_A           79 IRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFE--------G--HEHFVMC  145 (304)
T ss_dssp             EEEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEEC--------C--CCSCEEE
T ss_pred             EEEEECCCCcEEEE--EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhc--------c--cCCcEEE
Confidence            99999998887655  78899999999999999 68999999999999999877433 2222        1  4557999


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC--CCcEEEEec-CCcEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIY  285 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~~~i~  285 (458)
                      ++|+|+++.+|++|+.|+.|++||+++...              ......++...+..+.|+|  ++.+|++++ ++.|+
T Consensus       146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~  211 (304)
T 2ynn_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK  211 (304)
T ss_dssp             EEECTTCTTEEEEEETTSEEEEEETTCSSC--------------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence            999996578999999999999999976542              1223344567888999987  678999988 55899


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG  365 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg  365 (458)
                      +||+.+                                      ......+.+|...  |.+++| +|++++|++|+.||
T Consensus       212 iWd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~s~Dg  250 (304)
T 2ynn_A          212 IWDYQT--------------------------------------KSCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDG  250 (304)
T ss_dssp             EEETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTS
T ss_pred             EEeCCC--------------------------------------CccceeeCCCCCC--EEEEEE-CCCCCEEEEEcCCC
Confidence            999987                                      4567788888875  889998 99999999999999


Q ss_pred             eEEEEEecCCeEEEEeecCCceeeEEEecCCCC--eEEEeecCCcEEEecCCc
Q 012712          366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNA  416 (458)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~iw~~~~  416 (458)
                      +|++||+.++++++++..|...+.+++|+|++.  ++++|+ |..+.+|++..
T Consensus       251 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~  302 (304)
T 2ynn_A          251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN  302 (304)
T ss_dssp             CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred             eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence            999999999999999999999999999999886  466666 55577777654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.5e-50  Score=357.42  Aligned_cols=307  Identities=19%  Similarity=0.301  Sum_probs=256.4

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      +.+.+++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+ ..|...|.+++|+|  ++++|++++.|+.+
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~--~g~~las~~~d~~v  132 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAP--NGQSVACGGLDSAC  132 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECT--TSSEEEECCSSSCC
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCcE
Confidence            4566789999999999999999999999999999999999999887777 78999999999999  99999999999999


Q ss_pred             EEeeccccc-----ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          131 RHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       131 ~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      ++|++.+..     ......+.+|...+.++.|.|+++..|++++.|++|++||+++++....+.....   .+  +...
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~---~~--h~~~  207 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP---SG--HTAD  207 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS---SS--CCSC
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC---CC--CccC
Confidence            999997532     1122347789999999999998767899999999999999999987765532211   12  4557


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcE
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI  284 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i  284 (458)
                      +.+++|+|.++++|++|+.|+.|++||++....              ......+|...|.+++|+|++++|++++ ++.|
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i  273 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSR--------------AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC  273 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--------------CCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--------------ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence            999999885578999999999999999985421              2334566889999999999999999998 4589


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc-----ceeeeeEEEEecCCCcEEE
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-----NCVTVKGVNFFGPKCEYVV  359 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~s~~~~~l~  359 (458)
                      ++||+.++..                                      ...+..+.     ....+.+++| +|+|++|+
T Consensus       274 ~lwd~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~  314 (380)
T 3iz6_a          274 RLFDMRTGHQ--------------------------------------LQVYNREPDRNDNELPIVTSVAF-SISGRLLF  314 (380)
T ss_dssp             EEEETTTTEE--------------------------------------EEEECCCCSSSCCSSCSCSEEEE-CSSSSEEE
T ss_pred             EEEECCCCcE--------------------------------------EEEecccccccccccCceEEEEE-CCCCCEEE
Confidence            9999987432                                      11221111     0113788998 99999999


Q ss_pred             EecCCCeEEEEEecCCeEEEEe----ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          360 SGSDCGRIFIWKKKGGELIRVI----EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      +|+.||.|++||+.+++.+..+    .+|.+.|++++|+|+|++|++|+.|++|++|++...+
T Consensus       315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999888877    6799999999999999999999999999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.3e-49  Score=345.04  Aligned_cols=295  Identities=15%  Similarity=0.246  Sum_probs=251.9

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      ++..+++.+|.+.|++++|+|++++|+||+.|++|++||..+++....+ ..|...|.+++|+|  ++..|++++.|+.+
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp--~g~~lasg~~d~~i  130 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAP--SGCAIACGGLDNKC  130 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECT--TSSEEEEESTTSEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECC--CCCEEEEeeCCCCE
Confidence            3567889999999999999999999999999999999999988887776 67889999999999  99999999999999


Q ss_pred             EEeecccccc----eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          131 RHAQILERGG----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       131 ~vw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      ++|++.....    .....+..|...|.+++|+|++ ..|++++.|++|++||+++++....+..          +...|
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~----------h~~~v  199 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHG----------HGADV  199 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCE
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcC----------CCCCe
Confidence            9999865421    1223366799999999999998 6789999999999999999988776653          44578


Q ss_pred             EEEEECCC-CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcE
Q 012712          207 NAIAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI  284 (458)
Q Consensus       207 ~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i  284 (458)
                      .+++|+|+ ++++|++|+.||.|++||+++++.               ......|...|.+++|+|++.+|++++ ++.|
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v  264 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---------------VQAFETHESDVNSVRYYPSGDAFASGSDDATC  264 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeE
Confidence            99999885 257999999999999999998753               223456788999999999999999998 5589


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      ++||+...                                      .....+..+.....+.+++| +|++++|++|+.|
T Consensus       265 ~lwd~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~g~~d  305 (354)
T 2pbi_B          265 RLYDLRAD--------------------------------------REVAIYSKESIIFGASSVDF-SLSGRLLFAGYND  305 (354)
T ss_dssp             EEEETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CTTSSEEEEEETT
T ss_pred             EEEECCCC--------------------------------------cEEEEEcCCCcccceeEEEE-eCCCCEEEEEECC
Confidence            99998763                                      12223332222223788898 9999999999999


Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ++|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.|++|++|+
T Consensus       306 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999999999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.7e-49  Score=344.70  Aligned_cols=301  Identities=16%  Similarity=0.243  Sum_probs=237.1

Q ss_pred             EeeeeeEeecCCC-ceEEEEEecCCCEEEEecCCCeEEEEECCCccee--eeeccCCCcceeEEEEccCCCCeEEEEEcC
Q 012712           50 RLGIYAKLDKHRG-CVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA  126 (458)
Q Consensus        50 ~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  126 (458)
                      .+++++++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++...  ..+..+|...|.+++|+|  ++++|++++.
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~   81 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CGNYLASASF   81 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TSSEEEEEET
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CCCEEEEEEC
Confidence            3466788999988 9999999999999999999999999999877543  233468999999999999  9999999999


Q ss_pred             CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      |+.+++|++..+.......+.+|...|.+++|+|++ ++|++++.|+.|++||++++..........     +  +...|
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-----~--h~~~v  153 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLN-----S--HTQDV  153 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEEC-----C--CCSCE
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEec-----C--cCCCe
Confidence            999999999876544445588999999999999999 789999999999999998775433222111     1  44568


Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL  286 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i  286 (458)
                      .+++|+|+ +.+|++++.|+.|++||.+..+.                                                
T Consensus       154 ~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~------------------------------------------------  184 (345)
T 3fm0_A          154 KHVVWHPS-QELLASASYDDTVKLYREEEDDW------------------------------------------------  184 (345)
T ss_dssp             EEEEECSS-SSCEEEEETTSCEEEEEEETTEE------------------------------------------------
T ss_pred             EEEEECCC-CCEEEEEeCCCcEEEEEecCCCE------------------------------------------------
Confidence            88999997 67888899999999998765421                                                


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR  366 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~  366 (458)
                                                                  .....+.+|...  |.+++| +|+|++|++++.|++
T Consensus       185 --------------------------------------------~~~~~~~~h~~~--v~~l~~-sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          185 --------------------------------------------VCCATLEGHEST--VWSLAF-DPSGQRLASCSDDRT  217 (345)
T ss_dssp             --------------------------------------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSC
T ss_pred             --------------------------------------------EEEEEecCCCCc--eEEEEE-CCCCCEEEEEeCCCe
Confidence                                                        001223334442  666776 777777777777777


Q ss_pred             EEEEEecC---------------CeEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc----------
Q 012712          367 IFIWKKKG---------------GELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA----------  420 (458)
Q Consensus       367 i~iwd~~~---------------~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~----------  420 (458)
                      |++|+...               .+++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+...          
T Consensus       218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~  297 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH  297 (345)
T ss_dssp             EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred             EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence            77776522               133455555 8889999999999999999999999999998754211          


Q ss_pred             ccccccccEEEEEEecCC-cEEEeeecCCceEEEEEe
Q 012712          421 TLPTNIEQVCFSIYSADY-WWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       421 ~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~~~  456 (458)
                      ...+|...|.+++|+|++ .+||+++.||.|++|+.-
T Consensus       298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            234788899999999998 599999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-49  Score=347.33  Aligned_cols=289  Identities=13%  Similarity=0.149  Sum_probs=234.0

Q ss_pred             ecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC-------cc---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-------ER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      ..|...|.+++|+|||++|++++ |+++++||...       ..   ........|...|.+++|+|  ++ .|++++.|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~-~l~~~s~d  102 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG--ER-GILVASDS  102 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET--TT-EEEEEETT
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC--CC-eEEEEECC
Confidence            35778899999999999999887 66777776321       00   00111124567899999999  75 68899999


Q ss_pred             CcEEEeecccccceee--eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          128 GQVRHAQILERGGVET--KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      |.|++||+.+++....  ....+|...|++++|+|++ .+|++++.|+.|++||+++++.+..+..          |...
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~----------h~~~  171 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRA----------HAAQ  171 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSC
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC----------cCCc
Confidence            9999999998876543  2355899999999999999 7899999999999999999987776653          4557


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEE
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY  285 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~  285 (458)
                      |.+++|+|++..+|++++.|+.|++||+++++...                         .+..                
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------~~~~----------------  210 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS-------------------------QIGC----------------  210 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-------------------------ECC-----------------
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceee-------------------------eeec----------------
Confidence            99999999866789999999999999998764210                         0000                


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDC  364 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~d  364 (458)
                                                                         ..+..  .+.+++| +| ++++|++|+.|
T Consensus       211 ---------------------------------------------------~~~~~--~~~~~~~-~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          211 ---------------------------------------------------SAPGY--LPTSLAW-HPQQSEVFVFGDEN  236 (344)
T ss_dssp             ------------------------------------------------------CC--CEEEEEE-CSSCTTEEEEEETT
T ss_pred             ---------------------------------------------------ceeec--cceeeee-cCCCCcceEEeccC
Confidence                                                               00111  2677888 77 56789999999


Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCc-EEE
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYW-WSK  442 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~  442 (458)
                      |+|++||+.+++++.++.+|...|++++|+|++ ++||+|+.|++|+|||+.++++..+.+|.+.|++++|+|++. +|+
T Consensus       237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEE
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEE
Confidence            999999999999999999999999999999998 579999999999999999999888999999999999999995 678


Q ss_pred             eeecCCceEEEEEe
Q 012712          443 SQNFSCSILLFEWL  456 (458)
Q Consensus       443 s~~~d~~i~~w~~~  456 (458)
                      +++.|++|++|++-
T Consensus       317 s~s~D~~v~~w~v~  330 (344)
T 4gqb_B          317 TVGWDHQVVHHVVP  330 (344)
T ss_dssp             EEETTSCEEEEECC
T ss_pred             EEcCCCeEEEEECC
Confidence            99999999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.9e-50  Score=358.50  Aligned_cols=296  Identities=20%  Similarity=0.336  Sum_probs=250.7

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.|+|++++|++|+.||+|+|||+.+++..                     +.+.+|.+.|.+++|+|++++|++|+.|
T Consensus       113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------~~l~~h~~~V~~v~~~~~~~~l~sgs~D  171 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------RTLKGHTDSVQDISFDHSGKLLASCSAD  171 (410)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------EEEeccCCcEEEEEEcCCCCEEEEEeCC
Confidence            4568999999999999999999999988766                     4588999999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      ++|++||+.+++.+..+ .+|...|.+++|+|  ++++|++++.|+.|++||+.++..+..  +.+|...|.++.++|++
T Consensus       172 ~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g  246 (410)
T 1vyh_C          172 MTIKLWDFQGFECIRTM-HGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDG  246 (410)
T ss_dssp             SCCCEEETTSSCEEECC-CCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTS
T ss_pred             CeEEEEeCCCCceeEEE-cCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCC
Confidence            99999999998887777 79999999999999  999999999999999999998877655  78899999999999999


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  242 (458)
                       .++++++.|+.|++||+++++....+..          +...|.+++|+|++ .+.......                 
T Consensus       247 -~~l~s~s~D~~v~vwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~-~~~~~~~~~-----------------  297 (410)
T 1vyh_C          247 -TLIASCSNDQTVRVWVVATKECKAELRE----------HRHVVECISWAPES-SYSSISEAT-----------------  297 (410)
T ss_dssp             -SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECCSC-GGGGGGGCC-----------------
T ss_pred             -CEEEEEcCCCeEEEEECCCCceeeEecC----------CCceEEEEEEcCcc-cccchhhhc-----------------
Confidence             7899999999999999999887666543          44579999999973 221100000                 


Q ss_pred             cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                          ........+.+.+|++++ ++.|++||+.+                              
T Consensus       298 --------------------~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~------------------------------  327 (410)
T 1vyh_C          298 --------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVST------------------------------  327 (410)
T ss_dssp             --------------------SCC-------CCEEEEEETTSEEEEEETTT------------------------------
T ss_pred             --------------------cccccccCCCCCEEEEEeCCCeEEEEECCC------------------------------
Confidence                                000111234577888887 45799999876                              


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA  401 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  401 (458)
                              ......+.+|...  |.+++| +|+|++|++|+.||+|++||+.+++++.++.+|...|++++|+|++++|+
T Consensus       328 --------~~~~~~~~~h~~~--v~~v~~-~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  396 (410)
T 1vyh_C          328 --------GMCLMTLVGHDNW--VRGVLF-HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV  396 (410)
T ss_dssp             --------TEEEEEEECCSSC--EEEEEE-CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             --------CceEEEEECCCCc--EEEEEE-cCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEE
Confidence                    3456677888875  899998 99999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCcEEEecC
Q 012712          402 SSGIESDIKILTP  414 (458)
Q Consensus       402 s~~~d~~i~iw~~  414 (458)
                      +|+.|++|++|++
T Consensus       397 sgs~D~~i~vW~~  409 (410)
T 1vyh_C          397 TGSVDQTVKVWEC  409 (410)
T ss_dssp             EEETTSEEEEEC-
T ss_pred             EEeCCCcEEEEeC
Confidence            9999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-48  Score=352.73  Aligned_cols=333  Identities=12%  Similarity=0.101  Sum_probs=272.5

Q ss_pred             ecCCCceEEEEEecCCC-EEEEecCCCeEEEEEC----CCcc------eeeeecc---------CCCcceeEEEEccCCC
Q 012712           58 DKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDW----KTER------VKLSFHS---------GHNDNVFQAKIMPFTD  117 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~----~~~~------~~~~~~~---------~~~~~i~~~~~~~~~~  117 (458)
                      ..|.+.|++++|+|+++ +||+++.|+.|++|++    .+++      ....+..         +|...|++++|+|  +
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~  119 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH--D  119 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT--T
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC--C
Confidence            45679999999999999 9999999999999999    8777      3333311         1678999999999  9


Q ss_pred             CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712          118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR  197 (458)
Q Consensus       118 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  197 (458)
                      +++|++++.||.|++|+ .+++....  +..|...|.+++|+|++ .+|++++.|+.|++||+++++....+........
T Consensus       120 ~~~l~~~~~dg~i~i~~-~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWN-KTGALLNV--LNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             SSEEEEEETTSCEEEEE-TTSCEEEE--ECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             CCEEEEEeCCCeEEEEe-CCCCeeee--ccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            99999999999999999 44444443  77899999999999999 6889999999999999999887766653221100


Q ss_pred             -----CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC
Q 012712          198 -----RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ  272 (458)
Q Consensus       198 -----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (458)
                           ........+.+++|+|+  ..+++++.+|.|++||+++.+.               ......|...|.+++|+|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~  258 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTP---------------TGKLIGHHGPISVLEFNDT  258 (425)
T ss_dssp             ----------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSC---------------SEEECCCSSCEEEEEEETT
T ss_pred             ceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCce---------------eeeeccCCCceEEEEECCC
Confidence                 00001111788999986  4688999999999999988652               2234457789999999999


Q ss_pred             CcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       273 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                      +++|++++ ++.|++||+.+                                      ......+.+|...  +.+++| 
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~--------------------------------------~~~~~~~~~~~~~--i~~~~~-  297 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGN--------------------------------------GNSQNCFYGHSQS--IVSASW-  297 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSS--------------------------------------BSCSEEECCCSSC--EEEEEE-
T ss_pred             CCEEEEEcCCCEEEEEECCC--------------------------------------CccceEecCCCcc--EEEEEE-
Confidence            99999988 56899999887                                      3455666777664  899998 


Q ss_pred             cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc-------------
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD-------------  418 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~-------------  418 (458)
                      +|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|++.+++             
T Consensus       298 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  376 (425)
T 1r5m_A          298 VGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI  376 (425)
T ss_dssp             ETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------------
T ss_pred             CCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence            9999 99999999999999999999999999999999999999999999999999999999998876             


Q ss_pred             -------cc-ccccccc--cEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          419 -------RA-TLPTNIE--QVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       419 -------~~-~~~~~~~--~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                             .. .+..|..  .|.+++|+|++++|++++.||.|++|++
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          377 LNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             --CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             cCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence                   33 5666755  8999999999999999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-49  Score=358.36  Aligned_cols=333  Identities=12%  Similarity=0.146  Sum_probs=268.3

Q ss_pred             CCCCCCCCCC-eEEEe----------eCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEe
Q 012712            2 DDASNNNNNK-RARTS----------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN   70 (458)
Q Consensus         2 ~~~~~~~~~~-~l~~~----------~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s   70 (458)
                      -.+.|+|+++ +|++|          +.|+.|+|||+.+++....                  ... ..|...|.+++|+
T Consensus        16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~------------------~~~-~~~~~~v~~~~~s   76 (416)
T 2pm9_A           16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP------------------IAS-LQVDSKFNDLDWS   76 (416)
T ss_dssp             CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC------------------SCC-CCCSSCEEEEEEC
T ss_pred             ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE------------------EEE-EecCCceEEEEEC
Confidence            4578999987 89999          8999999999998763311                  112 3589999999999


Q ss_pred             cCCCEEEEecCCCeEEEEECCC----cceeeeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeeccccc------
Q 012712           71 TDGDILISGSDDRRVILWDWKT----ERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERG------  139 (458)
Q Consensus        71 ~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~------  139 (458)
                      |++++|++++.|+.|++||+.+    .+.+..+ .+|...|.+++|+|  + +.+|++++.||.|++||+.+.+      
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNA--KQDNVLASGGNNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECS--SSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred             CCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcC--CCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence            9999999999999999999987    2344444 78999999999999  8 8999999999999999998876      


Q ss_pred             ceee-eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          140 GVET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       140 ~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      .... .....|...|.+++|+|++..+|++++.|+.|++||+++++....+......  .+  +...+.+++|+|++..+
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~~  229 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN--SG--IKQQLSVVEWHPKNSTR  229 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS--SC--CCCCEEEEEECSSCTTE
T ss_pred             cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc--cc--cCCceEEEEECCCCCCE
Confidence            2221 2246789999999999995588999999999999999998776655432110  00  14467888888875567


Q ss_pred             EEEecCCC---eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712          219 FAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP  295 (458)
Q Consensus       219 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~  295 (458)
                      +++++.|+   .|++||+++.+.                                                         
T Consensus       230 l~~~~~d~~~~~i~~~d~~~~~~---------------------------------------------------------  252 (416)
T 2pm9_A          230 VATATGSDNDPSILIWDLRNANT---------------------------------------------------------  252 (416)
T ss_dssp             EEEEECCSSSCCCCEEETTSTTS---------------------------------------------------------
T ss_pred             EEEEECCCCCceEEEEeCCCCCC---------------------------------------------------------
Confidence            88888887   888888765420                                                         


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEec
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~  373 (458)
                                                          ....+. +|..  .+.+++| +| ++++|++++.||.|++||+.
T Consensus       253 ------------------------------------~~~~~~~~~~~--~v~~~~~-s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          253 ------------------------------------PLQTLNQGHQK--GILSLDW-CHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             ------------------------------------CSBCCCSCCSS--CEEEEEE-CSSCSSCEEEEESSSEEEEECSS
T ss_pred             ------------------------------------CcEEeecCccC--ceeEEEe-CCCCCCeEEEEeCCCCEEEeeCC
Confidence                                                111222 3444  3888888 88 89999999999999999999


Q ss_pred             CCeEEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcccccccc-----------------------------
Q 012712          374 GGELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRATLP-----------------------------  423 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~-----------------------------  423 (458)
                      +++++..+.+|...|.+++|+|++ ++|++++.|+.|++|++.+.......                             
T Consensus       294 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (416)
T 2pm9_A          294 SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSV  373 (416)
T ss_dssp             SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCS
T ss_pred             CCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccc
Confidence            999999999999999999999999 89999999999999999876533211                             


Q ss_pred             -------cccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          424 -------TNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       424 -------~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                             .+...+.+++|+|||++|++++.|+.|+||+..
T Consensus       374 ~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          374 FHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             SCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             ccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence                   145567899999999999999999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.3e-48  Score=333.89  Aligned_cols=296  Identities=21%  Similarity=0.346  Sum_probs=253.9

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      ..+..++.+|.+.|++++|+|++++|++++.|+.|++|++.+++....+ .+|...|.+++|+|  ++++|++++.|+.|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~i   89 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSNLLVSASDDKTL   89 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcC--CCCEEEEECCCCEE
Confidence            4556788999999999999999999999999999999999998887776 78999999999999  99999999999999


Q ss_pred             EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      ++||+.+++.+..  +.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+..          +..++.+++
T Consensus        90 ~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~v~~~~  156 (312)
T 4ery_A           90 KIWDVSSGKCLKT--LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPA----------HSDPVSAVH  156 (312)
T ss_dssp             EEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEE
T ss_pred             EEEECCCCcEEEE--EcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcEEEEE
Confidence            9999998877655  78899999999999998 6899999999999999999887666543          445799999


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEc
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ  289 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~  289 (458)
                      |+|+ +.++++++.||.|++||+++.+..              ......+...+..++|+|++++|++++ ++.|++||+
T Consensus       157 ~~~~-~~~l~~~~~d~~i~~wd~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          157 FNRD-GSLIVSSSYDGLCRIWDTASGQCL--------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             ECTT-SSEEEEEETTSCEEEEETTTCCEE--------------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             EcCC-CCEEEEEeCCCcEEEEECCCCcee--------------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            9997 789999999999999999876532              222334567899999999999999888 558999999


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                      .++                                      .....+.+|..........+..+++++|++|+.||.|++
T Consensus       222 ~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v  263 (312)
T 4ery_A          222 SKG--------------------------------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI  263 (312)
T ss_dssp             TTT--------------------------------------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred             CCC--------------------------------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence            873                                      345556666543223333443578999999999999999


Q ss_pred             EEecCCeEEEEeecCCceeeEEEecCCCCeEEEee--cCCcEEEecCC
Q 012712          370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPN  415 (458)
Q Consensus       370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d~~i~iw~~~  415 (458)
                      ||+.+++.+..+.+|...|.+++|+|++++|++++  .|++|++|+.+
T Consensus       264 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999999999999999999999987  69999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.6e-49  Score=343.48  Aligned_cols=295  Identities=16%  Similarity=0.242  Sum_probs=233.2

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      ..+.|+|||++|++++ |+++|+||..........     .....     ........|...|.+++|+|++ .|++|+.
T Consensus        34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~  101 (344)
T 4gqb_B           34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC-----AAPNE-----GFCSAGVQTEAGVADLTWVGER-GILVASD  101 (344)
T ss_dssp             EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG-----GTTCG-----GGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred             EEEEECCCCCEEEEEe-CCceEEeeceeeeecccc-----ccCCc-----ceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence            3567999999999888 888999985422111000     00000     0111223477889999999985 6889999


Q ss_pred             CCeEEEEECCCcceeeee---ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEE
Q 012712           82 DRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  158 (458)
                      ||+|+|||+.+++.+...   ..+|...|++++|+|  ++++|++++.|+.|++||+.+++.+..  +.+|...|.+++|
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~  177 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSS--YRAHAAQVTCVAA  177 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEE
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCcCCceEEEEe
Confidence            999999999988764432   358999999999999  999999999999999999998877655  8899999999999


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      +|++..+|++++.|+.|++||+++++....+....        +...+.+++|+|+++++|++|+.||.|++||+++++ 
T Consensus       178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-  248 (344)
T 4gqb_B          178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--------PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-  248 (344)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred             cCCCCCceeeeccccccccccccccceeeeeecce--------eeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-
Confidence            99987789999999999999999998776654221        334588999999877899999999999999987643 


Q ss_pred             CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712          239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS  318 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (458)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (344)
T 4gqb_B          249 --------------------------------------------------------------------------------  248 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712          319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS  397 (458)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (458)
                                   .+..+.+|...  |.+++| +|++ ++|++|+.|++|+|||+.+++++ .+.+|.+.|++++|+|++
T Consensus       249 -------------~~~~~~~h~~~--v~~v~f-sp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~  311 (344)
T 4gqb_B          249 -------------CVLSSAVHSQC--VTGLVF-SPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLN  311 (344)
T ss_dssp             -------------CCEEEECCSSC--EEEEEE-CSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSS
T ss_pred             -------------EEEEEcCCCCC--EEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCC
Confidence                         12334455553  888998 9987 58999999999999999888765 578899999999999998


Q ss_pred             C-eEEEeecCCcEEEecCCccc
Q 012712          398 T-VLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       398 ~-~l~s~~~d~~i~iw~~~~~~  418 (458)
                      + +|++++.|++|++|++.+..
T Consensus       312 ~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          312 HSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TTEEEEEETTSCEEEEECCC--
T ss_pred             CeEEEEEcCCCeEEEEECCCCC
Confidence            7 56789999999999998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-48  Score=343.17  Aligned_cols=288  Identities=16%  Similarity=0.233  Sum_probs=229.8

Q ss_pred             CCCCCCCCCCeEEEeeC------CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCE
Q 012712            2 DDASNNNNNKRARTSVD------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI   75 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~------d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~   75 (458)
                      ..+.|+|||++|++|+.      |+.|++|+..++.....                 +.....+|...|.+++|+|++.+
T Consensus        46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-----------------~~~~~~~~~~~V~~~~~s~d~~~  108 (357)
T 4g56_B           46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES-----------------LCTAGVQTEAGVTDVAWVSEKGI  108 (357)
T ss_dssp             EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG-----------------GCSEEEECSSCEEEEEEETTTEE
T ss_pred             EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee-----------------EecccCCCCCCEEEEEEcCCCCE
Confidence            35779999999999997      77899999887765432                 12335579999999999999865


Q ss_pred             EEEecCCCeEEEEECCCcceeeee---ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           76 LISGSDDRRVILWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        76 l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                       ++++.|++|+|||+.+++.....   ..+|...|++++|+|  ++++|++++.|+.|++||+.+++.+..  +.+|...
T Consensus       109 -l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~  183 (357)
T 4g56_B          109 -LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSE  183 (357)
T ss_dssp             -EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSC
T ss_pred             -EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCC
Confidence             56778999999999887654322   247999999999999  999999999999999999998877655  7889999


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      |++++|+|++..++++++.|+.|++||+++++....+....        +...+.+++|+|+++.+|++|+.|+.|++||
T Consensus       184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~--------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd  255 (357)
T 4g56_B          184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA--------SDTIPTSVTWHPEKDDTFACGDETGNVSLVN  255 (357)
T ss_dssp             EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT--------CCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred             EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc--------ccccccchhhhhcccceEEEeecccceeEEE
Confidence            99999999987789999999999999999988765543221        4456899999998778999999999999999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM  312 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
                      +++.+.                                                                          
T Consensus       256 ~~~~~~--------------------------------------------------------------------------  261 (357)
T 4g56_B          256 IKNPDS--------------------------------------------------------------------------  261 (357)
T ss_dssp             SSCGGG--------------------------------------------------------------------------
T ss_pred             CCCCcE--------------------------------------------------------------------------
Confidence            876531                                                                          


Q ss_pred             CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEE
Q 012712          313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCI  391 (458)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  391 (458)
                                          ...+.+|...  |.+++| +|++ ++|++|+.|++|+|||+++++++..+ +|.+.|+++
T Consensus       262 --------------------~~~~~~~~~~--v~~l~~-sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~v  317 (357)
T 4g56_B          262 --------------------AQTSAVHSQN--ITGLAY-SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGV  317 (357)
T ss_dssp             --------------------CEEECCCSSC--EEEEEE-CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred             --------------------eEEEecccee--EEEEEE-cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence                                1223334443  788888 8887 58999999999999999999887765 799999999


Q ss_pred             EecC-CCCeEEEeecCCcEEEecCCcc
Q 012712          392 EPHP-HSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       392 ~~s~-~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      +|+| ++++|++++.||+|++|++...
T Consensus       318 afsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          318 AWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9998 7999999999999999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.5e-47  Score=329.63  Aligned_cols=293  Identities=15%  Similarity=0.220  Sum_probs=243.2

Q ss_pred             EeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCc-----ceeeeeccCCCcceeEEEEccCCCCeEEEE
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTE-----RVKLSFHSGHNDNVFQAKIMPFTDDRSIVT  123 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  123 (458)
                      .+.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++...     .++..+ .+|...|.+++|+|  ++++|++
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~--dg~~l~s   82 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTA--DGAYALS   82 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECT--TSSEEEE
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECC--CCCEEEE
Confidence            456778899999999999999965 89999999999999998643     233444 79999999999999  9999999


Q ss_pred             EcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       124 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      ++.|++|++||+.+++....  +.+|...|.+++|+|++ .+|++++.|+.|++||++.. ....+..          +.
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~~~----------h~  148 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATLLG----------HN  148 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEECC----------CS
T ss_pred             EeCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEec----------cC
Confidence            99999999999998877655  78899999999999998 78999999999999999743 3333221          44


Q ss_pred             cceEEEEECCCC-----CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712          204 VNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS  278 (458)
Q Consensus       204 ~~v~~~~~~p~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (458)
                      ..+.++.|+|..     +..+++++.|+.|++||+++.+.               .....+|...|.+++|+|+|++|++
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~~~~h~~~v~~~~~sp~g~~l~s  213 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---------------EADFIGHNSNINTLTASPDGTLIAS  213 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---------------EEEECCCCSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---------------heeecCCCCcEEEEEEcCCCCEEEE
Confidence            578999999852     34899999999999999987653               2234567889999999999999999


Q ss_pred             ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712          279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY  357 (458)
Q Consensus       279 ~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~  357 (458)
                      ++ ++.|++||+.++                                      +....+..+.   .+.+++| +|++.+
T Consensus       214 ~~~dg~i~iwd~~~~--------------------------------------~~~~~~~~~~---~v~~~~~-sp~~~~  251 (319)
T 3frx_A          214 AGKDGEIMLWNLAAK--------------------------------------KAMYTLSAQD---EVFSLAF-SPNRYW  251 (319)
T ss_dssp             EETTCEEEEEETTTT--------------------------------------EEEEEEECCS---CEEEEEE-CSSSSE
T ss_pred             EeCCCeEEEEECCCC--------------------------------------cEEEEecCCC---cEEEEEE-cCCCCE
Confidence            98 558999999873                                      3445555443   3899998 999999


Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeec--------CCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          358 VVSGSDCGRIFIWKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       358 l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      |++++. +.+++|++.....+..+..        |...+.+++|+|||++|++|+.||.|++|++.++
T Consensus       252 la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          252 LAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            998875 4599999988877776643        4557899999999999999999999999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-46  Score=335.37  Aligned_cols=309  Identities=20%  Similarity=0.278  Sum_probs=246.3

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCC------------------cceeEEEEcc
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN------------------DNVFQAKIMP  114 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~~i~~~~~~~  114 (458)
                      +.+.+ +|.+.|.+++|+|||++||+|+ ++.+++|++.+++.+..+ ..|.                  ..|.+++|+|
T Consensus        57 ~~~~~-~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           57 LHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             EEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECT
T ss_pred             eEEec-CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECC
Confidence            33444 5999999999999999999987 678999999998877665 3332                  2489999999


Q ss_pred             CCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712          115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI  194 (458)
Q Consensus       115 ~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  194 (458)
                        ++++|++++.|+.|++||+.+++....  +.+|...|.+++|+|++ ..|++++.|+.|++||+++++....+.    
T Consensus       134 --dg~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~----  204 (393)
T 1erj_A          134 --DGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS----  204 (393)
T ss_dssp             --TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE----
T ss_pred             --CCCEEEEEcCCCeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE----
Confidence              999999999999999999988776554  78999999999999999 688999999999999999987766554    


Q ss_pred             CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712          195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE  274 (458)
Q Consensus       195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  274 (458)
                             ....+.+++|+|.++.+|++|+.|+.|++||+++++.......        ......+|...|.+++|+|+++
T Consensus       205 -------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~--------~~~~~~~h~~~v~~v~~~~~g~  269 (393)
T 1erj_A          205 -------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS--------ENESGTGHKDSVYSVVFTRDGQ  269 (393)
T ss_dssp             -------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSS
T ss_pred             -------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc--------cccCCCCCCCCEEEEEECCCCC
Confidence                   3346899999995478999999999999999988754322110        0112245788999999999999


Q ss_pred             EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712          275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP  353 (458)
Q Consensus       275 ~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~  353 (458)
                      +|++++ ++.|++||+.+.........                          .........+.+|...  |.+++| +|
T Consensus       270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~--------------------------~~~~~~~~~~~~h~~~--v~~~~~-~~  320 (393)
T 1erj_A          270 SVVSGSLDRSVKLWNLQNANNKSDSKT--------------------------PNSGTCEVTYIGHKDF--VLSVAT-TQ  320 (393)
T ss_dssp             EEEEEETTSEEEEEEC-----------------------------------------CEEEEEECCSSC--EEEEEE-CG
T ss_pred             EEEEEeCCCEEEEEECCCCCCcccccC--------------------------CCCCcceEEEecccCc--EEEEEE-CC
Confidence            999998 55899999976432211000                          0012334566778774  899998 99


Q ss_pred             CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC------CCCeEEEeecCCcEEEecCCcc
Q 012712          354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       354 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      ++++|++|+.|+.|++||+.+++++..+.+|.+.|.+++|++      ++++||+|+.||+|+||++...
T Consensus       321 ~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            999999999999999999999999999999999999999876      6889999999999999997643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-46  Score=330.19  Aligned_cols=286  Identities=14%  Similarity=0.168  Sum_probs=244.3

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD  179 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  179 (458)
                      +.+|.+.|++++|+|  ++++|++++.||.|++||+.+++....  +..|...|.+++|+|++ .++++++.|+.|++||
T Consensus        51 l~gH~~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           51 LRGHLAKIYAMHWGT--DSRLLLSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEE--EECSSSCEEEEEECTTS-SEEEEEETTCEEEEEE
T ss_pred             ecCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCCcceE--eecCCccEEEEEECCCC-CEEEEEeCCCeEEEEE
Confidence            379999999999999  999999999999999999988877655  67799999999999999 6899999999999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD  259 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (458)
                      +.+++........    ..+  +...+.++.|+|+ + .+++++.|+.|++||+++++.               ......
T Consensus       126 ~~~~~~~~~~~~~----~~~--h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~~~~---------------~~~~~~  182 (340)
T 1got_B          126 LKTREGNVRVSRE----LAG--HTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQ---------------TTTFTG  182 (340)
T ss_dssp             TTTCSBSCEEEEE----EEC--CSSCEEEEEEEET-T-EEEEEETTSCEEEEETTTTEE---------------EEEECC
T ss_pred             CccCCCcceeEEE----ecC--CCccEEEEEECCC-C-cEEEEECCCcEEEEECCCCcE---------------EEEEcC
Confidence            9876432111100    011  4557999999986 3 588999999999999988753               233456


Q ss_pred             cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                      |...|.+++|+|+++++++++ ++.|++||+.+                                      ......+.+
T Consensus       183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~--------------------------------------~~~~~~~~~  224 (340)
T 1got_B          183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--------------------------------------GMCRQTFTG  224 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------------------------------CSEEEEECC
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------------------------------------CeeEEEEcC
Confidence            788999999999999999988 55899999986                                      345667778


Q ss_pred             ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      |...  |.+++| +|++++|++|+.||+|++||+.+++.+..+..  +...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus       225 h~~~--v~~v~~-~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          225 HESD--INAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             CSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CcCC--EEEEEE-cCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence            8875  899998 99999999999999999999999988877753  234799999999999999999999999999988


Q ss_pred             cccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          417 ADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       417 ~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ++.. .+.+|...|.+++|+|||.+|++|+.|+.|+|||
T Consensus       302 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            7654 6778999999999999999999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-47  Score=374.10  Aligned_cols=437  Identities=11%  Similarity=0.040  Sum_probs=286.6

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEcccccccccc----------cc----ccccccccceEEee------ee--------
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRN----------FA----LRRRASEDLVLRLG------IY--------   54 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~----------~~----~~~~~~~~~~~~~~------~~--------   54 (458)
                      .+.|+| +++|++++.|++|+|||+.+++++...          ++    .+++++.++..++-      +.        
T Consensus        63 ~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~  141 (902)
T 2oaj_A           63 EMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ  141 (902)
T ss_dssp             EEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred             EEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc
Confidence            355777 778999999999999999888766432          11    25666777766551      11        


Q ss_pred             ---eEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCCcceeeeeccC------------------CCcceeEEEE
Q 012712           55 ---AKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERVKLSFHSG------------------HNDNVFQAKI  112 (458)
Q Consensus        55 ---~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~~i~~~~~  112 (458)
                         ..+.+|.++|.+++|+|+ +..|++|+.|+.| +||+++++.+..+ ..                  |...|.+++|
T Consensus       142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f  219 (902)
T 2oaj_A          142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLY  219 (902)
T ss_dssp             HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred             ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEE-ecccCCcCCCcccccccccccCCCeEEEEE
Confidence               235789999999999996 4789999999999 9999998877665 33                  3578999999


Q ss_pred             ccCCCCeEEEEEcCCCcEEEeecccccceeeeec---c-------------ccccceEEEEEc----CCCCeEEEEecCC
Q 012712          113 MPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---G-------------KHQGRAHKLAIE----PGSPHVFYTCGED  172 (458)
Q Consensus       113 ~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~---~-------------~~~~~v~~~~~~----~~~~~~l~s~~~d  172 (458)
                      +|  ++.+|++++.||.|++||+.+++.+..+.+   .             .|...|.+++|+    |++..++++++.+
T Consensus       220 sp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          220 HP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             CT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             cC--CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            99  999999999999999999988776543222   1             134579999995    4443567777554


Q ss_pred             -----CeEEEEeCC------------------CCCcccee---------------------------------------e
Q 012712          173 -----GLVQHFDLR------------------TGAATELF---------------------------------------T  190 (458)
Q Consensus       173 -----g~i~iwd~~------------------~~~~~~~~---------------------------------------~  190 (458)
                           ..+.+|++.                  +++....+                                       .
T Consensus       298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~  377 (902)
T 2oaj_A          298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIE  377 (902)
T ss_dssp             TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEE
T ss_pred             CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEE
Confidence                 256666631                  00000000                                       0


Q ss_pred             ecccC-C------------CCcce--------------------------------eecceEEEEECCCCCcEEEEecCC
Q 012712          191 CRPID-D------------RRNYM--------------------------------TVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       191 ~~~~~-~------------~~~~~--------------------------------~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      ..... .            ...|.                                +...+.+++|+|+ +++|++|+.|
T Consensus       378 ~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd-g~~laSgs~D  456 (902)
T 2oaj_A          378 TMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAFITGHSN  456 (902)
T ss_dssp             EEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE-EEEEEEEETT
T ss_pred             EEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc-CcEEEEecCC
Confidence            00000 0            00000                                1112334556787 7899999999


Q ss_pred             CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCC----C-C
Q 012712          226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP----P-P  299 (458)
Q Consensus       226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~----~-~  299 (458)
                      ++|++||+.++.......+...    ........|...|.+++|+|+|++||+++ +++|++|++.+++....    . .
T Consensus       457 gtVrlWd~~~g~~~~~~~~~~~----l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~  532 (902)
T 2oaj_A          457 GSVRIYDASHGDIQDNASFEVN----LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESG  532 (902)
T ss_dssp             SEEEEEESSCCTTTTTBCEEEE----HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----------
T ss_pred             CcEEEEECCCccccCCceEEee----chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCc
Confidence            9999999988742110000000    00001125778999999999999999999 55899999987632110    0 0


Q ss_pred             CCCccccccccccCCCCccccCCCCC--CcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTA--NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL  377 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  377 (458)
                      ..............++..........  -....++...+.+|...  |.+++| +||| +||+|+.|++|++||+++...
T Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svaf-SpdG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINN-SNIG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEE-CBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred             ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEe-cCCc-EEEEEeCCCcEEEEECCCCeE
Confidence            00000000000000000000000000  00112345677888875  999998 9999 999999999999999988776


Q ss_pred             EE--E---ee-cCCceeeEEEec-----CCC---CeEEEeecCCcEEEecC---Cccccc-ccccc-----cccEEEEE-
Q 012712          378 IR--V---IE-ADRHVVNCIEPH-----PHS---TVLASSGIESDIKILTP---NAADRA-TLPTN-----IEQVCFSI-  433 (458)
Q Consensus       378 ~~--~---~~-~~~~~v~~~~~s-----~~~---~~l~s~~~d~~i~iw~~---~~~~~~-~~~~~-----~~~v~~~~-  433 (458)
                      +.  .   +. +|.+.|++++|+     |||   ++|++|+.|++|++|++   .+++.. .+.+|     .++|.+++ 
T Consensus       609 ~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~  688 (902)
T 2oaj_A          609 IYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDA  688 (902)
T ss_dssp             EEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEE
T ss_pred             EEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEe
Confidence            64  2   32 788999999999     886   89999999999999999   666543 44444     35677776 


Q ss_pred             Ee----------------------cCCcEEEeeecCCceEEEEE
Q 012712          434 YS----------------------ADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       434 ~s----------------------~d~~~l~s~~~d~~i~~w~~  455 (458)
                      |+                      ++|.+|+++  +..|+||+.
T Consensus       689 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~  730 (902)
T 2oaj_A          689 FSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITL  730 (902)
T ss_dssp             EETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECT
T ss_pred             EecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeC
Confidence            76                      677777775  778999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-46  Score=331.63  Aligned_cols=326  Identities=12%  Similarity=0.094  Sum_probs=269.6

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      |.++|.+++|+|||++++++..++.+.+|........... .+|...|.+++|+|  ++++|++++ ||.|++|++.+++
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCCCC
Confidence            5678999999999999999888777777766555444444 47999999999999  999999999 9999999998765


Q ss_pred             cee---eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          140 GVE---TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       140 ~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      ...   ......|...|.+++|+|++ .+|++++.|+.|++||+++++.........        +...+.+++|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------~~~~i~~~~~~~~-~  153 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTS--------SAPACYALAISPD-S  153 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEEC--------SSSCEEEEEECTT-S
T ss_pred             ceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeeccc--------CCCceEEEEECCC-C
Confidence            332   21223788999999999998 689999999999999999887432222111        4456899999997 7


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP  295 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~  295 (458)
                      +++++++.||.|++||+++.+..               .....|...+.+++|+|++++|++++ ++.+++||+.++   
T Consensus       154 ~~l~~~~~dg~v~~~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---  215 (337)
T 1gxr_A          154 KVCFSCCSDGNIAVWDLHNQTLV---------------RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---  215 (337)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---
T ss_pred             CEEEEEeCCCcEEEEeCCCCcee---------------eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---
Confidence            89999999999999999886532               23345778999999999999999888 558999999863   


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                                                         .....+. +..  .+.+++| +|++++|++++.++.|++||+.++
T Consensus       216 -----------------------------------~~~~~~~-~~~--~v~~~~~-s~~~~~l~~~~~~~~i~~~~~~~~  256 (337)
T 1gxr_A          216 -----------------------------------RQLQQHD-FTS--QIFSLGY-CPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             -----------------------------------EEEEEEE-CSS--CEEEEEE-CTTSSEEEEEETTSCEEEEETTSS
T ss_pred             -----------------------------------ceEeeec-CCC--ceEEEEE-CCCCCEEEEEcCCCcEEEEECCCC
Confidence                                               2223332 333  3889998 999999999999999999999887


Q ss_pred             eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       376 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      +.. .+..|...|.+++|+|++++|++++.||.|++|++.+++......|...+.+++|+|++++|++++.||.|++|+.
T Consensus       257 ~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          257 DKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            754 6778999999999999999999999999999999999988777778889999999999999999999999999998


Q ss_pred             ec
Q 012712          456 LV  457 (458)
Q Consensus       456 ~~  457 (458)
                      +.
T Consensus       336 ~~  337 (337)
T 1gxr_A          336 IY  337 (337)
T ss_dssp             EC
T ss_pred             eC
Confidence            63

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-46  Score=324.46  Aligned_cols=286  Identities=15%  Similarity=0.168  Sum_probs=240.8

Q ss_pred             eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEE
Q 012712           97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ  176 (458)
Q Consensus        97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  176 (458)
                      ..+ .+|.+.|.+++|+|  ++++|++++.||.|++||+.++..+..  +..|..+|.+++|+|++ ++|++++.|+.|+
T Consensus         7 ~~~-~~h~~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~   80 (304)
T 2ynn_A            7 KTF-SNRSDRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEVRS--IQVTETPVRAGKFIARK-NWIIVGSDDFRIR   80 (304)
T ss_dssp             EEE-EEECSCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGG-TEEEEEETTSEEE
T ss_pred             Eee-cCCCCceEEEEECC--CCCEEEEEcCCCcEEEEECCCCceeEE--eeccCCcEEEEEEeCCC-CEEEEECCCCEEE
Confidence            344 78999999999999  999999999999999999988776654  77899999999999999 6899999999999


Q ss_pred             EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712          177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL  256 (458)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  256 (458)
                      +||+++++.+..+..          +...|.+++|+|+ +.+|++|+.|+.|++||+++...              ....
T Consensus        81 vwd~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~--------------~~~~  135 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEA----------HPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWA--------------LEQT  135 (304)
T ss_dssp             EEETTTCCEEEEEEC----------CSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTE--------------EEEE
T ss_pred             EEECCCCcEEEEEeC----------CCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcc--------------hhhh
Confidence            999999988776653          4557999999998 68999999999999999987531              1234


Q ss_pred             ccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712          257 IGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ  334 (458)
Q Consensus       257 ~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (458)
                      ..+|...|.+++|+| ++.+|++++ ++.|++||+....                                      ...
T Consensus       136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~--------------------------------------~~~  177 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------------------------------------PNF  177 (304)
T ss_dssp             ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS--------------------------------------CSE
T ss_pred             hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------------------------------------ccc
Confidence            556888999999999 578898888 5589999987631                                      222


Q ss_pred             ee-cCccceeeeeEEEEecC--CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEE
Q 012712          335 VY-KGHRNCVTVKGVNFFGP--KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI  411 (458)
Q Consensus       335 ~~-~~~~~~~~i~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  411 (458)
                      .+ .+|...  +..+.| +|  ++++|++|+.|++|++||+.+++++.++.+|...|.+++|+|++++|++|+.||+|++
T Consensus       178 ~~~~~~~~~--v~~~~~-~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i  254 (304)
T 2ynn_A          178 TLTTGQERG--VNYVDY-YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI  254 (304)
T ss_dssp             EEECCCTTC--EEEEEE-CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             eeccCCcCc--EEEEEE-EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEE
Confidence            22 334343  666776 55  7889999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCccccc-ccccccccEEEEEEecCCc--EEEeeecCCceEEEEE
Q 012712          412 LTPNAADRA-TLPTNIEQVCFSIYSADYW--WSKSQNFSCSILLFEW  455 (458)
Q Consensus       412 w~~~~~~~~-~~~~~~~~v~~~~~s~d~~--~l~s~~~d~~i~~w~~  455 (458)
                      ||+.+++.. .+..|...+.+++|+|++.  ++++|+.|| +.+|+.
T Consensus       255 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             EETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             EECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence            999988765 5667788899999999984  678877665 556654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-46  Score=327.03  Aligned_cols=297  Identities=14%  Similarity=0.164  Sum_probs=225.5

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccC-CCcceeEEEEccCCCCeEEEEEcCC
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      +++++.+.+|.++|.+++|+|+  +||+|+.|++|++||+..+.  ....+..+ |...|.+++|+|  ++++|++++.|
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~las~s~D   79 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAGSFD   79 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TSSEEEEEETT
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CCCEEEEEeCC
Confidence            3566789999999999999987  99999999999999998753  33333234 999999999999  99999999999


Q ss_pred             CcEEEeeccccc-----ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcce
Q 012712          128 GQVRHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYM  201 (458)
Q Consensus       128 g~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  201 (458)
                      +.|++|++....     ......+.+|...|.+++|+|++ .+|++++.|+.|++||++.. .....+...     .+  
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~-----~~--  151 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL-----QE--  151 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE-----CC--
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe-----cc--
Confidence            999999985432     12233478899999999999999 78999999999999999543 221111111     11  


Q ss_pred             eecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712          202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND  281 (458)
Q Consensus       202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (458)
                      +...|.+++|+|+ +.+|++++.|+.|++||.++..                                            
T Consensus       152 h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~--------------------------------------------  186 (330)
T 2hes_X          152 HSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDD--------------------------------------------  186 (330)
T ss_dssp             CSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTE--------------------------------------------
T ss_pred             CCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCC--------------------------------------------
Confidence            4456888888887 6788888888888888875421                                            


Q ss_pred             CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC--CcEEE
Q 012712          282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--CEYVV  359 (458)
Q Consensus       282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~l~  359 (458)
                                                                      ..+...+.+|...  |.+++| +|+  +.+|+
T Consensus       187 ------------------------------------------------~~~~~~~~~h~~~--v~~~~~-~~~~~~~~l~  215 (330)
T 2hes_X          187 ------------------------------------------------WECVAVLNGHEGT--VWSSDF-DKTEGVFRLC  215 (330)
T ss_dssp             ------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCSSSSCEEE
T ss_pred             ------------------------------------------------eeEEEEccCCCCc--EEEEEe-cCCCCeeEEE
Confidence                                                            0122344556654  888888 898  77899


Q ss_pred             EecCCCeEEEEEecCC--------eEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc--c--cccccc
Q 012712          360 SGSDCGRIFIWKKKGG--------ELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR--A--TLPTNI  426 (458)
Q Consensus       360 ~~~~dg~i~iwd~~~~--------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~--~--~~~~~~  426 (458)
                      +|+.|++|++||+..+        .....+.. |...|.+++|++++ +|++++.||.|++|+..+++.  .  ....|.
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~  294 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG  294 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence            9999999999999764        34555555 88999999999765 899999999999999887632  2  235676


Q ss_pred             c-cEEEEEEec--CCcEEEeeecCCceEEEEEe
Q 012712          427 E-QVCFSIYSA--DYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       427 ~-~v~~~~~s~--d~~~l~s~~~d~~i~~w~~~  456 (458)
                      . .|.+++|+|  ++.+|++++.||.|+||+.-
T Consensus       295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             TSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             cceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            6 899999999  78999999999999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-46  Score=341.76  Aligned_cols=327  Identities=9%  Similarity=0.086  Sum_probs=264.3

Q ss_pred             CCCCCCCCCC-eEEEeeCCCcEEEEEc----cccccccccccccccccccceEEeeeee------EeecCCCceEEEEEe
Q 012712            2 DDASNNNNNK-RARTSVDKALVDVWLR----ELGQLSTRNFALRRRASEDLVLRLGIYA------KLDKHRGCVNTVSFN   70 (458)
Q Consensus         2 ~~~~~~~~~~-~l~~~~~d~~i~iw~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~v~~~~~s   70 (458)
                      -.+.|+|+++ +|++|+.||.|++||+    .+++.+....           ....+..      ...+|.+.|++++|+
T Consensus        49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-----------IIAELRHPFALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-----------EEEEEECCCCCC------CBCEEEEEEC
T ss_pred             EEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-----------ccccccccccccccccCCCCceEEEEEc
Confidence            3466899999 9999999999999999    8777321100           0001111      123378899999999


Q ss_pred             cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712           71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ  150 (458)
Q Consensus        71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  150 (458)
                      |++++|++++.|+.|++|| .+++.+..+ ..|...|.+++|+|  ++++|++++.||.|++||+.+++....  +..+.
T Consensus       118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~  191 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQH--FELKE  191 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEE--ECCC-
T ss_pred             CCCCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEE--eeccc
Confidence            9999999999999999999 566666666 78999999999999  999999999999999999988776654  55555


Q ss_pred             cc---------------eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          151 GR---------------AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       151 ~~---------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      ..               +.+++|+|++  .+++++.+|.|++||+++++....+..          +...+.+++|+|+ 
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-  258 (425)
T 1r5m_A          192 TGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIG----------HHGPISVLEFNDT-  258 (425)
T ss_dssp             --------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECC----------CSSCEEEEEEETT-
T ss_pred             cCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeecc----------CCCceEEEEECCC-
Confidence            55               8999999986  478899999999999999877666542          4457999999998 


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG  294 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~  294 (458)
                      +.+|++++.|+.|++||+++.+.               ......|...|.+++|+|++ ++++++ ++.|++||+.+   
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~---  319 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNGNS---------------QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ---  319 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSBSC---------------SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT---
T ss_pred             CCEEEEEcCCCEEEEEECCCCcc---------------ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC---
Confidence            68999999999999999988653               23344577899999999999 777666 66899999976   


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                         ......+..|...  +.+++| +|++++|++++.||.|++||+.+
T Consensus       320 -----------------------------------~~~~~~~~~~~~~--i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          320 -----------------------------------NTLLALSIVDGVP--IFAGRI-SQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             -----------------------------------TEEEEEEECTTCC--EEEEEE-CTTSSEEEEEETTSCEEEEECHH
T ss_pred             -----------------------------------CcEeEecccCCcc--EEEEEE-cCCCCEEEEEECCCeEEEEECCC
Confidence                                               3445666666664  889998 99999999999999999999998


Q ss_pred             Ce--------------------EEEEeecCCc--eeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          375 GE--------------------LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       375 ~~--------------------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      ++                    ++..+..|..  .|.+++|+|++++|++++.||.|++|+++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          362 LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            88                    8899999976  99999999999999999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.9e-47  Score=340.50  Aligned_cols=314  Identities=14%  Similarity=0.182  Sum_probs=255.4

Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP  163 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  163 (458)
                      .+..|+..+..+...+ .+|.+.|++++|+|  ++++|++|+.||+|++||+.+++....  +..|...|.+++|+|++ 
T Consensus        47 ~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~~~--~~~h~~~v~~~~~s~~g-  120 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTL-QGHSGKVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKTHA--IKLHCPWVMECAFAPNG-  120 (380)
T ss_dssp             GCCCCCCCCCEEEEEE-CCCSSCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEE--EECCCTTCCCCEECTTS-
T ss_pred             cccccccceeEEeecc-cccccEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccceE--EecCCCCEEEEEECCCC-
Confidence            3445666666665665 89999999999999  999999999999999999988776655  77899999999999999 


Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      .+|++++.|+.+++||+.+....... ........+  +...+.++.|.|+++..|++|+.|+.|++||+++++......
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~-~~~~~~~~g--h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~  197 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGN-MPVSRVLTG--HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG  197 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCS-STTCCBCCC--CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCC-ccceeeccC--CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEee
Confidence            78999999999999999764321100 000011122  455788999999867789999999999999999876432110


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                .....+|...|.+++|+| ++.+|++++ ++.|++||++..                             
T Consensus       198 ----------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-----------------------------  238 (380)
T 3iz6_a          198 ----------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-----------------------------  238 (380)
T ss_dssp             ----------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-----------------------------
T ss_pred             ----------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-----------------------------
Confidence                      112345788999999987 788999988 558999998742                             


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc-------eeeEEEec
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH-------VVNCIEPH  394 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s  394 (458)
                              ......+.+|...  |.+++| +|++++|++|+.||+|++||+.+++.+..+..+..       .|++++|+
T Consensus       239 --------~~~~~~~~~h~~~--v~~v~~-~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          239 --------SRAVRTYHGHEGD--INSVKF-FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             --------CCCCEEECCCSSC--CCEEEE-CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred             --------CcceEEECCcCCC--eEEEEE-ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence                    3456778888885  899999 99999999999999999999999999988865432       48999999


Q ss_pred             CCCCeEEEeecCCcEEEecCCccccc-cc----ccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          395 PHSTVLASSGIESDIKILTPNAADRA-TL----PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       395 ~~~~~l~s~~~d~~i~iw~~~~~~~~-~~----~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      |+|++|++|+.||.|++||+..++.. .+    ..|.+.|.+++|+|||.+|++|+.|+.|++|++-
T Consensus       308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             CCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            99999999999999999999877654 22    5788899999999999999999999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-46  Score=369.92  Aligned_cols=355  Identities=14%  Similarity=0.145  Sum_probs=290.7

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.|+|++++|++|+.||.|+|||+.+++.+                     ..+.+|.++|++++|+|++++|++++.|
T Consensus        18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~---------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d   76 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVEV---------------------RSIQVTETPVRAGKFIARKNWIIVGSDD   76 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCceE---------------------EEEecCCCcEEEEEEeCCCCEEEEEeCC
Confidence            4678999999999999999999999988766                     4578999999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC-C
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-G  161 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  161 (458)
                      +.|++||+.+++.+..+ .+|...|.+++|+|  ++++|++++.||.|++|++.++.... ..+.+|...|.+++|+| +
T Consensus        77 g~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKD  152 (814)
T ss_dssp             SEEEEEETTTCCEEEEE-ECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEE-EEEECCSSCEEEEEEETTE
T ss_pred             CeEEEEECCCCcEEEEE-ecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEE-EEEcCCCCcEEEEEEEcCC
Confidence            99999999999988777 78999999999999  99999999999999999998764332 33778999999999999 5


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC--CCCcEEEEecCCCeEEEEecCCCccC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      + ..+++++.||.|++||++++.....+...         +...+.+++|+|  + +.++++++.||.|++||+++++. 
T Consensus       153 ~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~-  220 (814)
T 3mkq_A          153 P-STFASGCLDRTVKVWSLGQSTPNFTLTTG---------QERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSC-  220 (814)
T ss_dssp             E-EEEEEEETTSEEEEEETTCSSCSEEEECC---------CTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEE-
T ss_pred             C-CEEEEEeCCCeEEEEECCCCcceeEEecC---------CCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcE-
Confidence            5 78999999999999999888776655432         224689999999  6 68999999999999999987653 


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS  318 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (458)
                                    ......|...|.+++|+|++++|++++ ++.|++||+.++                          
T Consensus       221 --------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--------------------------  260 (814)
T 3mkq_A          221 --------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--------------------------  260 (814)
T ss_dssp             --------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--------------------------
T ss_pred             --------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------
Confidence                          223345678999999999999999988 568999998873                          


Q ss_pred             ccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc--EEEEecCCCeEEEEEecCCeE----------EE-------
Q 012712          319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGSDCGRIFIWKKKGGEL----------IR-------  379 (458)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~----------~~-------  379 (458)
                                  .....+..+...  +.+++| +|+++  ++++++ ++.+.+|++.....          +.       
T Consensus       261 ------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (814)
T 3mkq_A          261 ------------KVEKTLNVGLER--SWCIAT-HPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAA  324 (814)
T ss_dssp             ------------SEEEEECCSSSS--EEEEEE-CTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSC
T ss_pred             ------------cEEEEeecCCCc--EEEEEE-ccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECccccc
Confidence                        344555555553  788888 88887  455554 66678887653221          11       


Q ss_pred             --------------------------EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEE
Q 012712          380 --------------------------VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSI  433 (458)
Q Consensus       380 --------------------------~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~  433 (458)
                                                .+..+...+.+++|+|+|++|++++ |+.+.+|++....    ..+.+.+.+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~----~~~~~~i~~~~  399 (814)
T 3mkq_A          325 ASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR----NKAFGKCQDFV  399 (814)
T ss_dssp             TTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE----EEEEEECSEEE
T ss_pred             ceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc----ccCCCceEEEE
Confidence                                      1123444678999999999999988 8999999975432    23356788999


Q ss_pred             EecCCcEEEeeecCCceEEEEE
Q 012712          434 YSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       434 ~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      |+|||+++++++.|+.|++|+.
T Consensus       400 ~spdg~~la~~~~~g~v~l~~~  421 (814)
T 3mkq_A          400 WGPDSNSYALIDETGQIKYYKN  421 (814)
T ss_dssp             ECTTSSCEEEECTTCCEEEEET
T ss_pred             EeCCCCeEEEEeCCCcEEEEEC
Confidence            9999999999999999999964

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.4e-47  Score=344.23  Aligned_cols=341  Identities=13%  Similarity=0.115  Sum_probs=277.0

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.|+|++++|++++.|+.|++||+.+++....                     +..| ..+....|+|++++|++++.|
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~---------------------~~~~-~~~~~~~~~~~~~~l~~~~~d  118 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM---------------------LKRA-DYTAVDTAKLQMRRFILGTTE  118 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEETTTT---------------------SCSC-CEEEEEEECSSSCEEEEEETT
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccceeeE---------------------EecC-CceEEEEEecCCCEEEEEECC
Confidence            567899999999999999999999998776533                     4445 455566789999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      +.|++||+.+++....+ .+|...|++++|+|  ++++|++++.|+.|++||+.+++....  +.+|...|.+++|+|++
T Consensus       119 g~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          119 GDIKVLDSNFNLQREID-QAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRT--LIGHRATVTDIAIIDRG  193 (420)
T ss_dssp             SCEEEECTTSCEEEEET-TSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEE--EECCSSCEEEEEEETTT
T ss_pred             CCEEEEeCCCcceeeec-ccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceE--EcCCCCcEEEEEEcCCC
Confidence            99999999988876655 78999999999999  999999999999999999998877655  77899999999999998


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  242 (458)
                       .+|++++.|+.|++||+++++....+.....       +...+.++++.|.+...                        
T Consensus       194 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~------------------------  241 (420)
T 3vl1_A          194 -RNVLSASLDGTIRLWECGTGTTIHTFNRKEN-------PHDGVNSIALFVGTDRQ------------------------  241 (420)
T ss_dssp             -TEEEEEETTSCEEEEETTTTEEEEEECBTTB-------TTCCEEEEEEEECCCSS------------------------
T ss_pred             -CEEEEEcCCCcEEEeECCCCceeEEeecCCC-------CCCCccEEEEecCCcce------------------------
Confidence             6889999999999999999987776654322       33467788877652211                        


Q ss_pred             cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                   ....+...+.+++|+|++++|++++ ++.|++||+.++.                            
T Consensus       242 -------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----------------------------  280 (420)
T 3vl1_A          242 -------------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE----------------------------  280 (420)
T ss_dssp             -------------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC----------------------------
T ss_pred             -------------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc----------------------------
Confidence                         0111345788899999999999988 5589999998742                            


Q ss_pred             CCCCCcccccCceee-cCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEecCCe-EEEEeec-CCceeeEEEecCCC
Q 012712          322 PSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKGGE-LIRVIEA-DRHVVNCIEPHPHS  397 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~v~~~~~s~~~  397 (458)
                                ....+ ..|..  .+.+++| +|+++ +|++|+.||.|++||+.+++ ++..+.. |...|.++.+ +++
T Consensus       281 ----------~~~~~~~~~~~--~v~~~~~-~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~  346 (420)
T 3vl1_A          281 ----------QTIQLPSKFTC--SCNSLTV-DGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAG  346 (420)
T ss_dssp             ----------EEEEECCTTSS--CEEEEEE-CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETT
T ss_pred             ----------eeEEcccccCC--CceeEEE-eCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCC
Confidence                      22222 34554  3899999 99999 99999999999999999875 4777776 6667888855 578


Q ss_pred             CeEEEeecCCcEEEecCCcc----------cccccccccccEEEEEEecCCc---EEEeeecCCceEEEEEec
Q 012712          398 TVLASSGIESDIKILTPNAA----------DRATLPTNIEQVCFSIYSADYW---WSKSQNFSCSILLFEWLV  457 (458)
Q Consensus       398 ~~l~s~~~d~~i~iw~~~~~----------~~~~~~~~~~~v~~~~~s~d~~---~l~s~~~d~~i~~w~~~~  457 (458)
                      ++|++++.|+.|++|++...          ....+..+...|.+++|+|+++   .+++.+.+|.+.+|+.-.
T Consensus       347 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          347 ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            89999999999999998763          2234566778899999999999   777888899999998643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.4e-46  Score=327.96  Aligned_cols=298  Identities=15%  Similarity=0.217  Sum_probs=238.3

Q ss_pred             EEeeeeeEeecCCCceEEEEE-----ec-CCCEEEEecCCCeEEEEECCCcc-------eeeeeccCCCcceeEEEEccC
Q 012712           49 LRLGIYAKLDKHRGCVNTVSF-----NT-DGDILISGSDDRRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPF  115 (458)
Q Consensus        49 ~~~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~~~~  115 (458)
                      ..+++...+.+|.+.|++++|     ++ ++++|++|+.|++|++||+.+.+       .... +.+|...|.+++|+| 
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~-l~~h~~~V~~~~~~~-   86 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA-LTGHNHFVSDLALSQ-   86 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEE-ECCCSSCEEEEEECS-
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccch-hccCCCceEEEEECC-
Confidence            345677889999999999999     76 89999999999999999987542       2333 379999999999999 


Q ss_pred             CCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712          116 TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID  195 (458)
Q Consensus       116 ~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  195 (458)
                       ++.++++++.|+.|++||+.+++....  +.+|...|.+++|+|++ .+|++++.|+.|++||+..... .....    
T Consensus        87 -~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~-~~~~~----  157 (343)
T 2xzm_R           87 -ENCFAISSSWDKTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK-FSSAE----  157 (343)
T ss_dssp             -STTEEEEEETTSEEEEEETTSSCEEEE--EECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE-EECCT----
T ss_pred             -CCCEEEEEcCCCcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce-eeeec----
Confidence             999999999999999999998877655  78899999999999999 6889999999999999974321 11110    


Q ss_pred             CCCcceeecceEEEEECCCC---------CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712          196 DRRNYMTVVNLNAIAIDPRN---------ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG  266 (458)
Q Consensus       196 ~~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (458)
                       ..+  +...+.+++|+|++         +.++++++.|+.|++||.....                ......|...|.+
T Consensus       158 -~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----------------~~~~~~h~~~v~~  218 (343)
T 2xzm_R          158 -KEN--HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI----------------RYTFKAHESNVNH  218 (343)
T ss_dssp             -TTS--CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEE----------------EEEEECCSSCEEE
T ss_pred             -ccC--CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCce----------------eEEEcCccccceE
Confidence             011  44579999999973         1689999999999999953221                2234567889999


Q ss_pred             EEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712          267 LAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV  345 (458)
Q Consensus       267 ~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  345 (458)
                      ++|+|+|++|++++ ++.|++||+...                                     ......+. +..  .|
T Consensus       219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~-------------------------------------~~~~~~~~-~~~--~v  258 (343)
T 2xzm_R          219 LSISPNGKYIATGGKDKKLLIWDILNL-------------------------------------TYPQREFD-AGS--TI  258 (343)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEESSCC-------------------------------------SSCSEEEE-CSS--CE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCC-------------------------------------cccceeec-CCC--cE
Confidence            99999999999998 558999998542                                     11222222 222  38


Q ss_pred             eEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE--Eee-----------cCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIE-----------ADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       346 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      .+++| +|++++++++ .|+.|++|++.+++...  .+.           +|...|.+++|+|+|++|++|+.||.|++|
T Consensus       259 ~~v~~-sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w  336 (343)
T 2xzm_R          259 NQIAF-NPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF  336 (343)
T ss_dssp             EEEEE-CSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred             EEEEE-CCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence            89998 9999988765 57889999998776543  443           677889999999999999999999999999


Q ss_pred             cCCccc
Q 012712          413 TPNAAD  418 (458)
Q Consensus       413 ~~~~~~  418 (458)
                      ++++++
T Consensus       337 ~~~~g~  342 (343)
T 2xzm_R          337 SFETSA  342 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEccC
Confidence            987653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.8e-47  Score=331.31  Aligned_cols=305  Identities=15%  Similarity=0.209  Sum_probs=234.6

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.|+|++++||+|+.|++|+|||+++++....                  .....+|.+.|.+++|+|++++||+|+.|
T Consensus        21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK------------------SVLSEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEEEETTEEEEE------------------EEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCCcceee------------------eeeccccCCcEEEEEECCCCCEEEEEECC
Confidence            356899999999999999999999987653311                  12246899999999999999999999999


Q ss_pred             CeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-eeeeccccccceEEEEEc
Q 012712           83 RRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        83 ~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~  159 (458)
                      ++|++|++..+.  .+..+ .+|...|.+++|+|  ++++|++++.|+.|++||+.++... ....+..|...|.+++|+
T Consensus        83 ~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred             CcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence            999999988764  33444 78999999999999  9999999999999999999876542 233477899999999999


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      |++ .+|++++.|+.|++||+++++.......      .+  +...|.+++|+|+ +++|++++.|+.|++||.......
T Consensus       160 p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~------~~--h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          160 PSQ-ELLASASYDDTVKLYREEEDDWVCCATL------EG--HESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             SSS-SCEEEEETTSCEEEEEEETTEEEEEEEE------CC--CSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CCC-CEEEEEeCCCcEEEEEecCCCEEEEEEe------cC--CCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCC
Confidence            999 6899999999999999987754322221      12  4557999999998 789999999999999997543210


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA  319 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (458)
                      .                      .+.+....+.                                               
T Consensus       230 ~----------------------~~~~~~~~~~-----------------------------------------------  240 (345)
T 3fm0_A          230 Q----------------------GVACSGSDPS-----------------------------------------------  240 (345)
T ss_dssp             T----------------------CCCCC---CE-----------------------------------------------
T ss_pred             c----------------------cceeeccCCc-----------------------------------------------
Confidence            0                      0000000000                                               


Q ss_pred             cCCCCCCcccccCceeecC-ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe---------EEEEeecCCceee
Q 012712          320 ASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE---------LIRVIEADRHVVN  389 (458)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~  389 (458)
                                ..+...+.+ |..  .|.+++| +|++.+|++++.|+.|++|+.....         ......+|...|+
T Consensus       241 ----------~~~~~~~~~~h~~--~v~~v~~-~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~  307 (345)
T 3fm0_A          241 ----------WKCICTLSGFHSR--TIYDIAW-CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN  307 (345)
T ss_dssp             ----------EEEEEEECSSCSS--CEEEEEE-CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred             ----------cceeEEecCCCCC--cEEEEEE-ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence                      011122222 333  3889998 9999999999999999999987542         1123457999999


Q ss_pred             EEEecCCCC-eEEEeecCCcEEEecCCccccc
Q 012712          390 CIEPHPHST-VLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       390 ~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +++|+|++. +||+|+.||+|++|++.+++..
T Consensus       308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          308 CVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             EeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            999999985 9999999999999999887654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-45  Score=324.18  Aligned_cols=288  Identities=15%  Similarity=0.133  Sum_probs=242.2

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      .+|...|++++|+|  ++++|++++.||.|++||..+++....  +..|...|.+++|+|++ ..+++++.|+.+++|++
T Consensus        61 ~gH~~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~~~--~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           61 KGHGNKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKEHA--VTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             ECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEE--EECSSSCCCEEEECTTS-SEEEEESTTSEEEEEEC
T ss_pred             cCCCCeEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcceE--EecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEE
Confidence            79999999999999  999999999999999999988776654  66688899999999999 78999999999999998


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      ...........  .....+  +...|.+++|+|+ +..|++++.|++|++||+++++.               .....+|
T Consensus       136 ~~~~~~~~~~~--~~~~~~--h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~~~~---------------~~~~~~h  195 (354)
T 2pbi_B          136 TFDKNENMAAK--KKSVAM--HTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQL---------------LQSFHGH  195 (354)
T ss_dssp             CCCTTCCSGGG--CEEEEE--CSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCE---------------EEEEECC
T ss_pred             ecccccccccc--ceeeec--cCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCeE---------------EEEEcCC
Confidence            75432111000  000011  5557999999998 68999999999999999988753               2334567


Q ss_pred             ccceeEEEeCC--CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712          261 QVGITGLAFSD--QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK  337 (458)
Q Consensus       261 ~~~i~~~~~~~--~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (458)
                      ...|.+++|+|  ++.+|++++ ++.|++||+.+                                      ......+.
T Consensus       196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--------------------------------------~~~~~~~~  237 (354)
T 2pbi_B          196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--------------------------------------GQCVQAFE  237 (354)
T ss_dssp             SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT--------------------------------------CCEEEEEC
T ss_pred             CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC--------------------------------------CcEEEEec
Confidence            88999999987  467898888 56899999987                                      34566777


Q ss_pred             CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC--CceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      +|...  |.+++| +|++++|++|+.|++|++||+..++.+..+..+  ...+.+++|+|++++|++++.|+.|++||+.
T Consensus       238 ~h~~~--v~~v~~-~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          238 THESD--VNSVRY-YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             CCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCC--eEEEEE-eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence            88875  899999 999999999999999999999998888777644  3468999999999999999999999999998


Q ss_pred             ccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          416 AADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       416 ~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +++.. .+.+|...|.+++|+|||++|++++.|+.|+||+
T Consensus       315 ~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          315 KGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            77654 6678999999999999999999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.2e-46  Score=326.58  Aligned_cols=317  Identities=15%  Similarity=0.154  Sum_probs=262.4

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.++|+|++++++..++.+.+|+.....                    +.. ...+|.+.|++++|+|++++|++++ |
T Consensus        14 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-d   71 (337)
T 1gxr_A           14 SFHVTADGQMQPVPFPPDALIGPGIPRHA--------------------RQI-NTLNHGEVVCAVTISNPTRHVYTGG-K   71 (337)
T ss_dssp             EEEECSSSCEEECCCCTTSSSSTTCCSEE--------------------EEE-EEECCSSCCCEEEECSSSSEEEEEC-B
T ss_pred             EEEECCCCCEEEeecCCCcEeccccCCcc--------------------ccc-eeccCCCceEEEEEecCCcEEEEcC-C
Confidence            46789999999988877776666544221                    112 2347999999999999999999999 9


Q ss_pred             CeEEEEECCCcceeeeec----cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEE
Q 012712           83 RRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  158 (458)
                      +.|++||+.+++....+.    ..|...|.+++|+|  ++++|++++.||.|++||+.+++......+..|...+.+++|
T Consensus        72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  149 (337)
T 1gxr_A           72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence            999999998776433321    27899999999999  999999999999999999998875555557789999999999


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      +|++ .++++++.||.|++||+++++....+..          +...+.+++|+|+ +.++++++.||.|++||+++.+.
T Consensus       150 ~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~  217 (337)
T 1gxr_A          150 SPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQ  217 (337)
T ss_dssp             CTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCCC-CEEEEEeCCCcEEEEeCCCCceeeeeec----------ccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCce
Confidence            9998 6889999999999999999877665543          4457999999997 68999999999999999988753


Q ss_pred             CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712          239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT  317 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (458)
                      ...                ..+...+.+++|+|+++++++++ ++.+++|++.+.                         
T Consensus       218 ~~~----------------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-------------------------  256 (337)
T 1gxr_A          218 LQQ----------------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-------------------------  256 (337)
T ss_dssp             EEE----------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-------------------------
T ss_pred             Eee----------------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------
Confidence            211                12467899999999999999888 568999998763                         


Q ss_pred             cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712          318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS  397 (458)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (458)
                                    ....+..|...  +.+++| +|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++
T Consensus       257 --------------~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          257 --------------DKYQLHLHESC--VLSLKF-AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD  318 (337)
T ss_dssp             --------------CEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS
T ss_pred             --------------CeEEEcCCccc--eeEEEE-CCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC
Confidence                          12345566664  899998 999999999999999999999999887554 478899999999999


Q ss_pred             CeEEEeecCCcEEEecC
Q 012712          398 TVLASSGIESDIKILTP  414 (458)
Q Consensus       398 ~~l~s~~~d~~i~iw~~  414 (458)
                      ++|++++.||.|++|++
T Consensus       319 ~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          319 KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEETTSCEEEEEE
T ss_pred             CEEEEecCCCeEEEEEE
Confidence            99999999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6e-45  Score=316.31  Aligned_cols=284  Identities=13%  Similarity=0.175  Sum_probs=237.9

Q ss_pred             ccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccc---eeeeeccccccceEEEEEcCCCCeEEEEecCCCeE
Q 012712          100 HSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGG---VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV  175 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  175 (458)
                      +.+|.+.|.+++|+|  ++ ++|++++.|++|++|++.....   .....+.+|...|.+++|+|++ .+|++++.|++|
T Consensus        13 l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v   89 (319)
T 3frx_A           13 LEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTL   89 (319)
T ss_dssp             ECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             EccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEE
Confidence            379999999999998  65 7999999999999999875432   2234578999999999999999 789999999999


Q ss_pred             EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712          176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN  255 (458)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  255 (458)
                      ++||+++++....+..          +...|.+++|+|+ +.++++|+.|+.|++||++...                ..
T Consensus        90 ~~wd~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~~~~----------------~~  142 (319)
T 3frx_A           90 RLWDVATGETYQRFVG----------HKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQC----------------LA  142 (319)
T ss_dssp             EEEETTTTEEEEEEEC----------CSSCEEEEEECTT-SCEEEEEETTSCEEEEETTSCE----------------EE
T ss_pred             EEEECCCCCeeEEEcc----------CCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe----------------EE
Confidence            9999999987766653          4557999999997 7899999999999999997532                22


Q ss_pred             cccccccceeEEEeCCCC------cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712          256 LIGDEQVGITGLAFSDQS------ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD  328 (458)
Q Consensus       256 ~~~~~~~~i~~~~~~~~~------~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (458)
                      ...+|...+.+++|.|.+      ..+++++ ++.|++||+.+                                     
T Consensus       143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-------------------------------------  185 (319)
T 3frx_A          143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-------------------------------------  185 (319)
T ss_dssp             EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-------------------------------------
T ss_pred             EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-------------------------------------
Confidence            344578899999999954      4788877 55899999976                                     


Q ss_pred             cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCc
Q 012712          329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD  408 (458)
Q Consensus       329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  408 (458)
                       ......+.+|...  |.+++| +|+|++|++|+.||+|++||+.+++.+..+..+ ..|.+++|+|++.+|++++. +.
T Consensus       186 -~~~~~~~~~h~~~--v~~~~~-sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~-~~  259 (319)
T 3frx_A          186 -FQIEADFIGHNSN--INTLTA-SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATA-TG  259 (319)
T ss_dssp             -TEEEEEECCCCSC--EEEEEE-CTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEET-TE
T ss_pred             -chhheeecCCCCc--EEEEEE-cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcC-CC
Confidence             3445667788875  899998 999999999999999999999999999998855 57999999999999998875 45


Q ss_pred             EEEecCCcccccc---------cccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          409 IKILTPNAADRAT---------LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       409 i~iw~~~~~~~~~---------~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +++|++.......         ...+...+.+++|+|||++|++|+.|+.|+|||..
T Consensus       260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            9999988764321         12345569999999999999999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7e-45  Score=319.56  Aligned_cols=296  Identities=18%  Similarity=0.240  Sum_probs=229.1

Q ss_pred             CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEE
Q 012712            7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI   86 (458)
Q Consensus         7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   86 (458)
                      ++++++|++|+.|++|+|||+.+++....              .......+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus        36 ~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~  101 (343)
T 2xzm_R           36 NEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR  101 (343)
T ss_dssp             TCCCCEEEEEETTSCEEEEEECSSCCSSB--------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred             CCCCCEEEEEcCCCEEEEEECCcCCcccc--------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence            34899999999999999999986543211              1123457889999999999999999999999999999


Q ss_pred             EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC---
Q 012712           87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP---  163 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  163 (458)
                      +||+.+++.+..+ .+|...|.+++|+|  ++++|++++.|+.|++||+.............|...|.+++|+|++.   
T Consensus       102 lwd~~~~~~~~~~-~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  178 (343)
T 2xzm_R          102 LWDLRTGTTYKRF-VGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN  178 (343)
T ss_dssp             EEETTSSCEEEEE-ECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred             EEECCCCcEEEEE-cCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence            9999999887777 78999999999999  99999999999999999997433322222347889999999999862   


Q ss_pred             ------eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          164 ------HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       164 ------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                            .+|++++.|+.|++||.. .+....+..          +...|.+++|+|+ +++|++|+.||.|++||++...
T Consensus       179 ~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~----------h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          179 KVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKA----------HESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             CCCSSCCEEEEEETTSEEEEEETT-TEEEEEEEC----------CSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCS
T ss_pred             ccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcC----------ccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCc
Confidence                  479999999999999943 333333321          4557999999998 7899999999999999995432


Q ss_pred             cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCC--CCCCCCccccccccccCCC
Q 012712          238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN--PPPSSPVSTRSEASEMGSD  315 (458)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  315 (458)
                      ..              .... .+...|.+++|+|++++++++.++.+++|++.+.....  .+...+             
T Consensus       247 ~~--------------~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~-------------  298 (343)
T 2xzm_R          247 YP--------------QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP-------------  298 (343)
T ss_dssp             SC--------------SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS-------------
T ss_pred             cc--------------ceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc-------------
Confidence            11              1111 12456999999999999998888899999998754322  111000             


Q ss_pred             CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe
Q 012712          316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE  376 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  376 (458)
                                    ........+|..  .+.+++| +|+|++|++|+.||.|++|++++++
T Consensus       299 --------------~~~~~~~~~~~~--~v~~~~~-sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          299 --------------ITKAEGQKGKNP--QCTSLAW-NALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             --------------GGGBTTBCCSCC--CEEEEEE-CSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             --------------chhhhhhcCCCC--ceEEEEE-CCCCCeEEEecCCceEEEEEEEccC
Confidence                          000111234554  3889999 9999999999999999999987653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4e-44  Score=315.44  Aligned_cols=297  Identities=13%  Similarity=0.217  Sum_probs=240.5

Q ss_pred             EeeeeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCCcce----eeeeccCCCcceeEEEEccCCCCeEEEEE
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTC  124 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  124 (458)
                      ++.+..+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+.    ....+.+|...|.+++|+|  ++++|+++
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s~  104 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSG  104 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEEE
Confidence            44566789999999999999997 68999999999999999876542    1223378999999999999  99999999


Q ss_pred             cCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeec
Q 012712          125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV  204 (458)
Q Consensus       125 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (458)
                      +.|+.|++|+.........  ...+...+..+.+++++ ..|++++.|+.+++||+..........       .+  +..
T Consensus       105 ~~d~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~-------~~--~~~  172 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQD-------ES--HSE  172 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS-------SS--CSS
T ss_pred             cccccceEEeecccceeee--ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEe-------cc--ccC
Confidence            9999999999987766554  55677888899999998 678999999999999987654322211       11  445


Q ss_pred             ceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC
Q 012712          205 NLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE  282 (458)
Q Consensus       205 ~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~  282 (458)
                      .+..++|+++. ..++++++.|+.|++||+++.+.               ......|...|.+++|+|++++|++++ ++
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL---------------KTNHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCce---------------eeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            78899998863 35778999999999999998753               233455788999999999999999988 55


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      .|++||+.+                                      ...+..+..+.   .+.+++| +|++.++ +++
T Consensus       238 ~i~iwd~~~--------------------------------------~~~~~~~~~~~---~v~~~~~-~~~~~~~-~~~  274 (340)
T 4aow_A          238 QAMLWDLNE--------------------------------------GKHLYTLDGGD---IINALCF-SPNRYWL-CAA  274 (340)
T ss_dssp             EEEEEETTT--------------------------------------TEEEEEEECSS---CEEEEEE-CSSSSEE-EEE
T ss_pred             eEEEEEecc--------------------------------------CceeeeecCCc---eEEeeec-CCCCcee-ecc
Confidence            899999986                                      33445555544   3788888 9987665 455


Q ss_pred             CCCeEEEEEecCCeEEEEee---------cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          363 DCGRIFIWKKKGGELIRVIE---------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      .|+.|++||++++..+..+.         +|...|++++|+|++++|++|+.||.|+||++++|.
T Consensus       275 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            69999999999887776553         578899999999999999999999999999998875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-44  Score=355.07  Aligned_cols=334  Identities=15%  Similarity=0.231  Sum_probs=279.1

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      ++++.+.+.+|.+.|.+++|+|++++||+++.||.|+|||+.+++.+..+ .+|...|.+++|+|  ++++|++++.||.
T Consensus         2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~   78 (814)
T 3mkq_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIA--RKNWIIVGSDDFR   78 (814)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEG--GGTEEEEEETTSE
T ss_pred             CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeC--CCCEEEEEeCCCe
Confidence            34567789999999999999999999999999999999999999888877 68999999999999  9999999999999


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      |++||+.+++....  +.+|...|.+++|+|++ ..|++++.||.|++||++++. ....+..          +...+.+
T Consensus        79 i~vw~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----------~~~~v~~  145 (814)
T 3mkq_A           79 IRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEG----------HEHFVMC  145 (814)
T ss_dssp             EEEEETTTCCEEEE--EECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEEC----------CSSCEEE
T ss_pred             EEEEECCCCcEEEE--EecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcC----------CCCcEEE
Confidence            99999998887665  77899999999999999 678999999999999998773 3333332          4457999


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC--CCcEEEEec-CCcEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELLVSYN-DEFIY  285 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~~~i~  285 (458)
                      ++|+|+++..+++++.||.|++||+++.+..              ......+...+.+++|+|  ++.+|++++ ++.|+
T Consensus       146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  211 (814)
T 3mkq_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK  211 (814)
T ss_dssp             EEEETTEEEEEEEEETTSEEEEEETTCSSCS--------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcce--------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence            9999944789999999999999999876421              223334457899999999  899999988 45899


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG  365 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg  365 (458)
                      +||+.+                                      ......+.+|...  +.+++| +|++++|++++.||
T Consensus       212 ~~d~~~--------------------------------------~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          212 IWDYQT--------------------------------------KSCVATLEGHMSN--VSFAVF-HPTLPIIISGSEDG  250 (814)
T ss_dssp             EEETTT--------------------------------------TEEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTS
T ss_pred             EEECCC--------------------------------------CcEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCC
Confidence            999876                                      3456667777764  889998 99999999999999


Q ss_pred             eEEEEEecCCeEEEEeecCCceeeEEEecCCCCe-EEEeecCCcEEEecCCccccc------------------------
Q 012712          366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV-LASSGIESDIKILTPNAADRA------------------------  420 (458)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~i~iw~~~~~~~~------------------------  420 (458)
                      .|++||+.+++.+..+..|...+.+++|+|+++. +++++.++.+.+|++......                        
T Consensus       251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  330 (814)
T 3mkq_A          251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT  330 (814)
T ss_dssp             CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred             eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence            9999999999999999999999999999999874 244555777888876542110                        


Q ss_pred             --------------------ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          421 --------------------TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       421 --------------------~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                                          ....+...+.+++|+|+|+++++++ |+.+.+|+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred             eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence                                0122333478999999999999988 899999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.4e-44  Score=310.20  Aligned_cols=284  Identities=15%  Similarity=0.232  Sum_probs=241.2

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD  179 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  179 (458)
                      +.+|...|++++|+|  ++++|++++.||.|++|++.+++....  +.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus        19 ~~gh~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           19 LAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD   93 (312)
T ss_dssp             ECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             EcccCCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcccchh--hccCCCceEEEEEcCCC-CEEEEECCCCEEEEEE
Confidence            379999999999999  999999999999999999988776554  78899999999999999 7899999999999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD  259 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (458)
                      +++++....+..          +...|.+++|+|+ ++++++++.|+.|++||+++.+.               ......
T Consensus        94 ~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~---------------~~~~~~  147 (312)
T 4ery_A           94 VSSGKCLKTLKG----------HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKC---------------LKTLPA  147 (312)
T ss_dssp             TTTCCEEEEEEC----------CSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCE---------------EEEECC
T ss_pred             CCCCcEEEEEcC----------CCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEE---------------EEEecC
Confidence            999987766653          4457999999998 78999999999999999987653               223445


Q ss_pred             cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-
Q 012712          260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-  337 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  337 (458)
                      |...|.+++|+|++++|++++ ++.|++||+.++                                      .....+. 
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------------------------------------~~~~~~~~  189 (312)
T 4ery_A          148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG--------------------------------------QCLKTLID  189 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------------------------------CEEEEECC
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------------------------------ceeeEEec
Confidence            678899999999999999988 558999998763                                      2222332 


Q ss_pred             CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeE--EEe-cCCCCeEEEeecCCcEEEecC
Q 012712          338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC--IEP-HPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      .+..  .+..++| +|++++|++++.||.|++||+.+++.+..+.+|...+..  ..+ .+++++|++|+.||.|++||+
T Consensus       190 ~~~~--~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~  266 (312)
T 4ery_A          190 DDNP--PVSFVKF-SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL  266 (312)
T ss_dssp             SSCC--CEEEEEE-CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred             cCCC--ceEEEEE-CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence            2222  3788888 999999999999999999999999999999888765432  233 467889999999999999999


Q ss_pred             Cccccc-ccccccccEEEEEEecCCcEEEeee--cCCceEEEEE
Q 012712          415 NAADRA-TLPTNIEQVCFSIYSADYWWSKSQN--FSCSILLFEW  455 (458)
Q Consensus       415 ~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~--~d~~i~~w~~  455 (458)
                      .+++.. .+.+|...|.+++|+|++.++++++  .|+.|++|+.
T Consensus       267 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          267 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             CCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            988765 6678999999999999999999987  6999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.6e-44  Score=324.26  Aligned_cols=319  Identities=16%  Similarity=0.237  Sum_probs=268.4

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      +....+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+ .+|...|.+++|++    +.+++++.||.|+
T Consensus       109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~~~dg~i~  182 (445)
T 2ovr_B          109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD----NIIISGSTDRTLK  182 (445)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred             ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC----CEEEEEeCCCeEE
Confidence            345678999987633 35556899999999999999999999988777 79999999999964    5999999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      +||+.+++....  +.+|...|.+++|++   ..+++++.||.|++||+++++....+..          +...+.++++
T Consensus       183 vwd~~~~~~~~~--~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~----------~~~~v~~~~~  247 (445)
T 2ovr_B          183 VWNAETGECIHT--LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMG----------HVAAVRCVQY  247 (445)
T ss_dssp             EEETTTTEEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEEC----------CSSCEEEEEE
T ss_pred             EEECCcCcEEEE--ECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcC----------CcccEEEEEE
Confidence            999998876655  788999999999964   4689999999999999999887766653          4457899999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712          212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD  290 (458)
Q Consensus       212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~  290 (458)
                        + +.++++++.||.|++||+++.+..               .....|...|.+++|  ++.++++++ ++.|++||+.
T Consensus       248 --~-~~~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          248 --D-GRRVVSGAYDFMVKVWDPETETCL---------------HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             --C-SSCEEEEETTSCEEEEEGGGTEEE---------------EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred             --C-CCEEEEEcCCCEEEEEECCCCcEe---------------EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence              3 578999999999999999886532               233457788999999  778888887 6689999998


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      +                                      ......+.+|...  +.++.+   +++++++|+.||.|++|
T Consensus       308 ~--------------------------------------~~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~dg~i~vw  344 (445)
T 2ovr_B          308 T--------------------------------------GNCIHTLTGHQSL--TSGMEL---KDNILVSGNADSTVKIW  344 (445)
T ss_dssp             T--------------------------------------CCEEEEECCCCSC--EEEEEE---ETTEEEEEETTSCEEEE
T ss_pred             C--------------------------------------CCEEEEEcCCccc--EEEEEE---eCCEEEEEeCCCeEEEE
Confidence            7                                      3445667777664  666655   57799999999999999


Q ss_pred             EecCCeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccc------ccccccEEEEEEecCCcEE
Q 012712          371 KKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL------PTNIEQVCFSIYSADYWWS  441 (458)
Q Consensus       371 d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l  441 (458)
                      |+.+++.+..+..   |...|.+++|+  +++|++++.||.|++|++.+++....      ..+.+.|++++|+|++.++
T Consensus       345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  422 (445)
T 2ovr_B          345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC  422 (445)
T ss_dssp             ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred             ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence            9999999999986   88899999995  68999999999999999998876533      3677789999999999999


Q ss_pred             EeeecCCc----eEEEEEe
Q 012712          442 KSQNFSCS----ILLFEWL  456 (458)
Q Consensus       442 ~s~~~d~~----i~~w~~~  456 (458)
                      ++++.||+    |.+||+-
T Consensus       423 a~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          423 AVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEECSSSSSCCEEEEEECC
T ss_pred             EEcccCCCCccEEEEEECC
Confidence            99999998    9999984

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-46  Score=338.67  Aligned_cols=320  Identities=13%  Similarity=0.055  Sum_probs=224.1

Q ss_pred             CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC------CCEEEEec
Q 012712            7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD------GDILISGS   80 (458)
Q Consensus         7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~   80 (458)
                      +|+++.+++++.|++|+|||++++++..                 .....+.+|.+.|.+++|+|+      +.+||+++
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~-----------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s  232 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHC-----------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS  232 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCE-----------------EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCc-----------------eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence            3445556667789999999998776431                 122346778899999999997      57999999


Q ss_pred             CCCeEEEEECCCccee-----------eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc
Q 012712           81 DDRRVILWDWKTERVK-----------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH  149 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  149 (458)
                      .|++|+|||+.++...           ..+ .+|...|++++|+|  ++ .|++|+.||+|++||++++.... ..+.+|
T Consensus       233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~--~~-~lasgs~DgtV~lWD~~~~~~~~-~~~~~H  307 (524)
T 2j04_B          233 QEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLS--PT-TVVCGFKNGFVAEFDLTDPEVPS-FYDQVH  307 (524)
T ss_dssp             TTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESS--SS-EEEEEETTSEEEEEETTBCSSCS-EEEECS
T ss_pred             cCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecC--CC-eEEEEeCCCEEEEEECCCCCCce-EEeecc
Confidence            9999999999876421           133 68999999999998  64 79999999999999998764322 236789


Q ss_pred             ccceEEE--EEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe
Q 012712          150 QGRAHKL--AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY  227 (458)
Q Consensus       150 ~~~v~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  227 (458)
                      ...|.++  +|+|+++++|++++.|++|++||+++++....+..+.        ....+.+++|+|+ +..+++++.|++
T Consensus       308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------~~~~v~~v~fsp~-~~~l~s~~~d~t  378 (524)
T 2j04_B          308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------RGSNLVPVVYCPQ-IYSYIYSDGASS  378 (524)
T ss_dssp             SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--------SCCSCCCEEEETT-TTEEEEECSSSE
T ss_pred             cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc--------ccCcccceEeCCC-cCeEEEeCCCCc
Confidence            9999999  5677754689999999999999999877665544211        1124678889997 567888888888


Q ss_pred             EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccc
Q 012712          228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS  307 (458)
Q Consensus       228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~  307 (458)
                      |++||+++..                                                                      
T Consensus       379 v~lwd~~~~~----------------------------------------------------------------------  388 (524)
T 2j04_B          379 LRAVPSRAAF----------------------------------------------------------------------  388 (524)
T ss_dssp             EEEEETTCTT----------------------------------------------------------------------
T ss_pred             EEEEECcccc----------------------------------------------------------------------
Confidence            9999887642                                                                      


Q ss_pred             cccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec----
Q 012712          308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA----  383 (458)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----  383 (458)
                                              ....+.+|...  |.+++| +|+|++|++|+.||+|++||+... .+..++.    
T Consensus       389 ------------------------~~~~l~gH~~~--V~sva~-Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~  440 (524)
T 2j04_B          389 ------------------------AVHPLVSRETT--ITAIGV-SRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSAT  440 (524)
T ss_dssp             ------------------------CCEEEEECSSC--EEEEEC-CSSCCBCEEEETTTEEECCBSCSS-TTTCC------
T ss_pred             ------------------------cceeeecCCCc--eEEEEe-CCCCCeEEEEECCCEEEEEechHh-hccccccCccc
Confidence                                    11223345553  888998 999999999999999999998543 2222111    


Q ss_pred             -CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCC---cEEEeeecCCceEEEEEe
Q 012712          384 -DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADY---WWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       384 -~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~---~~l~s~~~d~~i~~w~~~  456 (458)
                       +...+..++|+|+++.+. ...+..+..|+........+.+|...|.+++|+|++   .++|+|+.||.|+||++-
T Consensus       441 ~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          441 QKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CCCCEEEECBCCSSSCEEE-ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             eeeeEEEEeccCCCCCeEE-ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence             112578999999998653 222223333333344556788899999999999996   599999999999999964

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.5e-44  Score=338.88  Aligned_cols=351  Identities=16%  Similarity=0.167  Sum_probs=269.3

Q ss_pred             CCCCCC--CCCeEEEeeCCCcEEEEEcccc--------cccccc-----------ccc----ccccccc----ceEEe--
Q 012712            3 DASNNN--NNKRARTSVDKALVDVWLRELG--------QLSTRN-----------FAL----RRRASED----LVLRL--   51 (458)
Q Consensus         3 ~~~~~~--~~~~l~~~~~d~~i~iw~~~~g--------~~~~~~-----------~~~----~~~~~~~----~~~~~--   51 (458)
                      .+.|+|  ++++|++|+.||.|+|||+.++        +.+...           +++    ++.+..+    +...+  
T Consensus        69 ~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d  148 (615)
T 1pgu_A           69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD  148 (615)
T ss_dssp             EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred             EEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence            356889  9999999999999999999765        332221           111    3333332    12221  


Q ss_pred             --eeeeEeecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCc---ceeEEEEccCCC-CeEEEEE
Q 012712           52 --GIYAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTD-DRSIVTC  124 (458)
Q Consensus        52 --~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~-~~~l~s~  124 (458)
                        +....+.+|.+.|.+++|+|+++ +|++++.|+.|++||+.+++.+..+ .+|..   .|.+++|+|  + +++|+++
T Consensus       149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~--~~~~~l~~~  225 (615)
T 1pgu_A          149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSP--DSGEFVITV  225 (615)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECS--TTCCEEEEE
T ss_pred             CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECC--CCCCEEEEE
Confidence              45677889999999999999997 8999999999999999999888777 68988   999999999  9 9999999


Q ss_pred             cCCCcEEEeecccccceeeeec-c---ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecc-------
Q 012712          125 AADGQVRHAQILERGGVETKLL-G---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP-------  193 (458)
Q Consensus       125 ~~dg~i~vw~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------  193 (458)
                      +.||.|++||+.+++.+..  + .   .|...|.+++|+ ++ .+|++++.|+.|++||+++++....+....       
T Consensus       226 ~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  301 (615)
T 1pgu_A          226 GSDRKISCFDGKSGEFLKY--IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ  301 (615)
T ss_dssp             ETTCCEEEEETTTCCEEEE--CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred             eCCCeEEEEECCCCCEeEE--ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence            9999999999988877654  5 4   799999999999 77 789999999999999999876554443220       


Q ss_pred             ------------------------------cCCCCcc-------------------------------eeecceEEEEEC
Q 012712          194 ------------------------------IDDRRNY-------------------------------MTVVNLNAIAID  212 (458)
Q Consensus       194 ------------------------------~~~~~~~-------------------------------~~~~~v~~~~~~  212 (458)
                                                    .....+|                               .+...|.+++|.
T Consensus       302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~  381 (615)
T 1pgu_A          302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS  381 (615)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred             eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence                                          0000000                               011223333331


Q ss_pred             ----------------------------------CCC-------------------------------------CcEEEE
Q 012712          213 ----------------------------------PRN-------------------------------------ANLFAV  221 (458)
Q Consensus       213 ----------------------------------p~~-------------------------------------~~~l~~  221 (458)
                                                        |++                                     +.++++
T Consensus       382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  461 (615)
T 1pgu_A          382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV  461 (615)
T ss_dssp             STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred             CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence                                              110                                     234555


Q ss_pred             ecC-CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCC
Q 012712          222 AGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       222 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~  299 (458)
                      ++. |+.|++||+.+.+..              ......|...|.+++|+|++++|++++ ++.|++||+.++       
T Consensus       462 ~~~~d~~i~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-------  520 (615)
T 1pgu_A          462 GLEEGNTIQVFKLSDLEVS--------------FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-------  520 (615)
T ss_dssp             EETTTSCEEEEETTEEEEE--------------EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred             eecCCCeEEEEECCCcccc--------------ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-------
Confidence            555 666777776654321              023445778999999999999999998 558999999873       


Q ss_pred             CCCccccccccccCCCCccccCCCCCCcccccCceeecC-ccceeeeeEEEEecC----------CCcEEEEecCCCeEE
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGP----------KCEYVVSGSDCGRIF  368 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~----------~~~~l~~~~~dg~i~  368 (458)
                                                     .....+.+ |...  |.+++| +|          ++++|++++.||.|+
T Consensus       521 -------------------------------~~~~~~~~~h~~~--v~~~~~-sp~~~~~~~~~~~~~~l~~~~~dg~i~  566 (615)
T 1pgu_A          521 -------------------------------EVKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVATGSLDTNIF  566 (615)
T ss_dssp             -------------------------------EEEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEEEEETTSCEE
T ss_pred             -------------------------------cceeEeecCCCCc--eeEEEE-cCccccccccccCCCEEEEEcCCCcEE
Confidence                                           34455555 6664  899999 99          999999999999999


Q ss_pred             EEEecCC-eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          369 IWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       369 iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      +||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|++..
T Consensus       567 iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          567 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            9999988 78899999999999999999999 99999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-43  Score=317.85  Aligned_cols=288  Identities=14%  Similarity=0.201  Sum_probs=232.9

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc------------------ccceEEEEEcCCCC
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH------------------QGRAHKLAIEPGSP  163 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~  163 (458)
                      +|...|.+++|+|  ++++|++++ ++.+++|++.+++.+..  +..|                  ...|.+++|+|++ 
T Consensus        62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-  135 (393)
T 1erj_A           62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVAR--LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-  135 (393)
T ss_dssp             ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEE--ECC-----------------CCCCBEEEEEECTTS-
T ss_pred             CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEE--ecCccccccccccccccccCCCceeEEEEEECCCC-
Confidence            6999999999999  999999987 68999999988776543  3322                  2248999999999 


Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      .+|++++.|+.|++||+++++....+..          +...|.+++|+|+ +.+|++++.|+.|++||+++++...   
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~---  201 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQG----------HEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSL---  201 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE---
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcc----------CCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeEE---
Confidence            6899999999999999998876665542          4557999999998 6899999999999999998875321   


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                   ...+...+.+++|+| ++++|++++ ++.|++||+.++.....+.                      
T Consensus       202 -------------~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~----------------------  246 (393)
T 1erj_A          202 -------------TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD----------------------  246 (393)
T ss_dssp             -------------EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------------
T ss_pred             -------------EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeec----------------------
Confidence                         112346799999999 899999988 5589999988743211100                      


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC------------eEEEEeecCCceee
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG------------ELIRVIEADRHVVN  389 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~  389 (458)
                               .......+|...  |.+++| +|+|++|++|+.|++|++||+.+.            .+...+.+|...|.
T Consensus       247 ---------~~~~~~~~h~~~--v~~v~~-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  314 (393)
T 1erj_A          247 ---------SENESGTGHKDS--VYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL  314 (393)
T ss_dssp             ---------------CCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred             ---------ccccCCCCCCCC--EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE
Confidence                     001122456664  899999 999999999999999999998753            34567788999999


Q ss_pred             EEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEec------CCcEEEeeecCCceEEEEEe
Q 012712          390 CIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSA------DYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~------d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +++|+|++++|++++.|+.|++||+.+++.. .+.+|...|.+++|+|      ++.+|++|+.||+|+||++-
T Consensus       315 ~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            9999999999999999999999999988765 6678999999999986      68999999999999999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.8e-44  Score=322.15  Aligned_cols=349  Identities=15%  Similarity=0.166  Sum_probs=240.7

Q ss_pred             eEeecCCCceEEEEEec-CCCEEEEecCCCeEEEEECCCcceeeeec------------cCCCcceeEEEEccCCCCeEE
Q 012712           55 AKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFH------------SGHNDNVFQAKIMPFTDDRSI  121 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~~~l  121 (458)
                      ..+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.            .+|...|.+++|+|. ++.+|
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l  115 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMF  115 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CCcEE
Confidence            45788999999999999 99999999999999999999877654442            259999999999982 45689


Q ss_pred             EEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC--eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712          122 VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN  199 (458)
Q Consensus       122 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  199 (458)
                      ++++.||.|++||+.+++....  + .+...+.++.++|.++  .++++++.|+.|++||+++++....+..        
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------  184 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADV--F-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG--------  184 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEE--E-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC--------
T ss_pred             EEEeCCCeEEEeeCCCCcccee--c-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC--------
Confidence            9999999999999998776654  2 2677899999998642  4899999999999999999887766643        


Q ss_pred             ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC-CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD-GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS  278 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (458)
                        +...|.+++|+|++..++++++.||.|++||+++.... ....................|...|.+++|+|++++|++
T Consensus       185 --~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          185 --HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             --CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             --CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence              44579999999985447999999999999999876521 111111111111223334567889999999999999998


Q ss_pred             ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712          279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY  357 (458)
Q Consensus       279 ~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~  357 (458)
                      ++ ++.+++||+.++..........                                 ....... ......  ...+..
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~---------------------------------~~~~~~~-~~~~~~--~~~~~~  306 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKV---------------------------------CNNSKKG-LKFTVS--CGCSSE  306 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCC---------------------------------CCCCSSC-CCCEEC--CSSSSC
T ss_pred             ecCCCeEEEEECCCCccceeccccc---------------------------------ccccccc-ceeEEe--cCCCce
Confidence            88 5589999998865432221000                                 0000000 011111  334456


Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecC
Q 012712          358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSAD  437 (458)
Q Consensus       358 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d  437 (458)
                      +++++.++.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++|++.+++...........  ..+.|.
T Consensus       307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~  384 (408)
T 4a11_B          307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPA  384 (408)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------
T ss_pred             EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccc
Confidence            666778999999999999999999999999999999999999999999999999999988766433222222  233333


Q ss_pred             C-cEEEeeecCCceEEEEE
Q 012712          438 Y-WWSKSQNFSCSILLFEW  455 (458)
Q Consensus       438 ~-~~l~s~~~d~~i~~w~~  455 (458)
                      . ....+.+.|+.+++|+.
T Consensus       385 ~~~~~~~~~~~~~~~~W~~  403 (408)
T 4a11_B          385 FEDAWSSSDEEGGTSAWSH  403 (408)
T ss_dssp             -------------------
T ss_pred             cceeecccCccCceeecCC
Confidence            3 33346778899999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.9e-43  Score=317.96  Aligned_cols=298  Identities=15%  Similarity=0.134  Sum_probs=245.7

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc------eeeeeccCCCcceeEEEEccCCC----C--
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER------VKLSFHSGHNDNVFQAKIMPFTD----D--  118 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~~~~~----~--  118 (458)
                      +...+.+.+|.+.|++++|+|  ++|++|+.|+.|++||+.+++      .+..+ .+|...|.+++|+|  +    +  
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~g~~   80 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQ--AIERDAFE   80 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEE--EEETTTEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEec--ccccCCcc
Confidence            456677899999999999998  799999999999999999887      55665 68999999999999  8    9  


Q ss_pred             -eEEEEEcCCCcEEEeecccccc-----eeeeecccc-----ccceEEEEEc----CCCCeE-EEEecCCCeEEEEeCCC
Q 012712          119 -RSIVTCAADGQVRHAQILERGG-----VETKLLGKH-----QGRAHKLAIE----PGSPHV-FYTCGEDGLVQHFDLRT  182 (458)
Q Consensus       119 -~~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~dg~i~iwd~~~  182 (458)
                       ++|++++.||.|++|++.+++.     ...  +..|     ...|.+++|+    |++ .. |++++.||.|++||+++
T Consensus        81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           81 LCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEE--ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred             ccEEEEEcCCCCEEEEEccCCccccccccee--ecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence             9999999999999999988775     433  6667     5899999999    998 56 99999999999999998


Q ss_pred             ------CCccc-----eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCc
Q 012712          183 ------GAATE-----LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF  251 (458)
Q Consensus       183 ------~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  251 (458)
                            ++...     .+..... .  ...+...+.+++|+|+ + ++++++.||.|++||+++.+..            
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~------------  220 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVE-S--PMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPL------------  220 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEEC-C--SSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEE------------
T ss_pred             cccccccceeeccCcceeeeeec-c--ccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCcee------------
Confidence                  65554     3321000 0  0114557999999998 6 9999999999999999876532            


Q ss_pred             CCCccccc---c---ccceeEEEeCCCCcEEEEec-C---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          252 CPPNLIGD---E---QVGITGLAFSDQSELLVSYN-D---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       252 ~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~-~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                         .....   |   ...|.+++|+|++++|++++ +   +.|++||+.++                             
T Consensus       221 ---~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-----------------------------  268 (397)
T 1sq9_A          221 ---YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-----------------------------  268 (397)
T ss_dssp             ---EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-----------------------------
T ss_pred             ---EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-----------------------------
Confidence               22233   5   78899999999999999988 4   58999999874                             


Q ss_pred             CCCCCcccccCceeecC-------------ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee------
Q 012712          322 PSTANTDVRIAPQVYKG-------------HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE------  382 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------  382 (458)
                               .....+.+             |..  .|.+++| +|++++|++++.||.|++||+.+++++..+.      
T Consensus       269 ---------~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  336 (397)
T 1sq9_A          269 ---------ERIGSLSVPTHSSQASLGEFAHSS--WVMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI  336 (397)
T ss_dssp             ---------CEEEEECBC--------CCBSBSS--CEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred             ---------cccceeccCcccccccccccccCC--cEEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc
Confidence                     23344444             555  4899998 9999999999999999999999999999999      


Q ss_pred             cC---------------CceeeEEEecCCC----------CeEEEeecCCcEEEecCCcc
Q 012712          383 AD---------------RHVVNCIEPHPHS----------TVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       383 ~~---------------~~~v~~~~~s~~~----------~~l~s~~~d~~i~iw~~~~~  417 (458)
                      +|               ...|.+++|+|++          ++|++++.||.|++|++.++
T Consensus       337 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          337 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            88               8999999999998          79999999999999998875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-43  Score=309.03  Aligned_cols=288  Identities=15%  Similarity=0.210  Sum_probs=214.2

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEe-ec-CCCceEEEEEecCCCEEEEecC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DK-HRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      +.++|+  +|++|+.|+.|++||+.++...                   ....+ .+ |.+.|.+++|+|++++||+|+.
T Consensus        20 ~~~s~~--~las~~~D~~i~lw~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X           20 FDFSQG--ILATGSTDRKIKLVSVKYDDFT-------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             EEEETT--EEEEEESSSCEEEEECSSSCCE-------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             eccCCC--EEEEEcCCCEEEEEEecCCCeE-------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence            345565  9999999999999999865321                   12334 34 9999999999999999999999


Q ss_pred             CCeEEEEECCCc-------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-c-eeeeeccccccc
Q 012712           82 DRRVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-G-VETKLLGKHQGR  152 (458)
Q Consensus        82 d~~i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~-~~~~~~~~~~~~  152 (458)
                      |++|+|||+...       +.+..+ .+|...|.+++|+|  ++++|++++.|+.|++||+.... . .....+.+|...
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEE-C----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             CCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence            999999998532       233334 78999999999999  99999999999999999995432 1 222347889999


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC--ccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEE
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTR  229 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~  229 (458)
                      |.+++|+|++ .+|++++.|+.|++||+.++.  ++..+.        +  +...|.+++|+|++ +.+|++++.|+.|+
T Consensus       156 v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~--------~--h~~~v~~~~~~~~~~~~~l~s~s~D~~v~  224 (330)
T 2hes_X          156 VKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLN--------G--HEGTVWSSDFDKTEGVFRLCSGSDDSTVR  224 (330)
T ss_dssp             EEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEEC--------C--CSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred             eEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEcc--------C--CCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence            9999999998 689999999999999987663  333332        2  45579999999973 35899999999999


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccc
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      +||++......                    ..                       .|.                     
T Consensus       225 iw~~~~~~~~~--------------------~~-----------------------~~~---------------------  240 (330)
T 2hes_X          225 VWKYMGDDEDD--------------------QQ-----------------------EWV---------------------  240 (330)
T ss_dssp             EEEEEEECTTS--------------------CE-----------------------EEE---------------------
T ss_pred             EEEecCCCccc--------------------cc-----------------------eeE---------------------
Confidence            99987642100                    00                       000                     


Q ss_pred             cccCCCCccccCCCCCCcccccCceeecC-ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe--EEEE-eecCC
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE--LIRV-IEADR  385 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~  385 (458)
                                            ....+.+ |..  .|.+++| ++++ +|++++.||.|++|+..+++  .... +.+|.
T Consensus       241 ----------------------~~~~~~~~h~~--~v~~v~~-s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~  294 (330)
T 2hes_X          241 ----------------------CEAILPDVHKR--QVYNVAW-GFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG  294 (330)
T ss_dssp             ----------------------EEEECCSCCSS--CEEEEEE-CTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred             ----------------------Eeeeccccccc--ceEEEEE-cCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence                                  0111222 444  3889998 8665 89999999999999998874  3333 35787


Q ss_pred             c-eeeEEEecC--CCCeEEEeecCCcEEEecCCc
Q 012712          386 H-VVNCIEPHP--HSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       386 ~-~v~~~~~s~--~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      . .|.+++|+|  ++++||+|+.||+|++|+++.
T Consensus       295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            6 899999999  789999999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-43  Score=310.64  Aligned_cols=303  Identities=16%  Similarity=0.188  Sum_probs=252.9

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      ....+.+|.+.|++++|+|++++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|  ++++|++++.||.|++
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDC--FTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECT--TSSEEEEEETTTEEEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcC--CCCEEEEEeCCCeEEE
Confidence            34568899999999999999999999999999999999999988777 78999999999999  9999999999999999


Q ss_pred             eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccC---CCCcceeec
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPID---DRRNYMTVV  204 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~  204 (458)
                      ||+.+++....  +. +...+.+++|+|++ ..+++++.+     +.|++||++.......+......   ....+....
T Consensus       101 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (369)
T 3zwl_B          101 WDVSNGQCVAT--WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD  176 (369)
T ss_dssp             EETTTCCEEEE--EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred             EECCCCcEEEE--ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence            99998887665  33 78899999999999 678888888     99999999887654433322111   111111223


Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF  283 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~  283 (458)
                      .+.+++|+|+ ++++++++.||.|++||+++...              .......|...|.+++|+|++++|++++ ++.
T Consensus       177 ~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  241 (369)
T 3zwl_B          177 AATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYE--------------YVDSIDLHEKSISDMQFSPDLTYFITSSRDTN  241 (369)
T ss_dssp             CEEEEEECGG-GCEEEEEETTSEEEEEETTTTTE--------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcE--------------eEEEEecCCCceeEEEECCCCCEEEEecCCce
Confidence            7999999997 68999999999999999987321              1233445678999999999999999888 558


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~  363 (458)
                      |++||+.++                                      .....+. +..  .+..++| +|+++++++++.
T Consensus       242 i~v~d~~~~--------------------------------------~~~~~~~-~~~--~~~~~~~-~~~~~~l~~~~~  279 (369)
T 3zwl_B          242 SFLVDVSTL--------------------------------------QVLKKYE-TDC--PLNTAVI-TPLKEFIILGGG  279 (369)
T ss_dssp             EEEEETTTC--------------------------------------CEEEEEE-CSS--CEEEEEE-CSSSSEEEEEEC
T ss_pred             EEEEECCCC--------------------------------------ceeeeec-CCC--CceeEEe-cCCCceEEEeec
Confidence            999999873                                      3334444 222  3788998 999999999998


Q ss_pred             CC--------------eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          364 CG--------------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       364 dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      ++              .+++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|++..+..
T Consensus       280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          280 QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence            88              899999999999999999999999999999999999999999999999987643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.3e-43  Score=321.92  Aligned_cols=318  Identities=13%  Similarity=0.145  Sum_probs=228.9

Q ss_pred             eeeeEeecCCCceEEEEEec-CCCEEEEecCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      ++.....+|...|+||+|+| ++++||+|+.||.|+|||+.+++....+ ..+|.+.|++++|+|. ++++|++++.||+
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~  188 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGT  188 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSC
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCE
Confidence            44556778999999999999 5679999999999999999877643332 2689999999999983 5789999999999


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      |++||+++...........+...+.+++|+|++ .+|++|+.||.|++||++... +..+.        +  +...|.++
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-~~~~~--------~--h~~~v~~v  256 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-LWNLR--------M--HKKKVTHV  256 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-CCCSB--------C--CSSCEEEE
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-eEEEe--------c--ccceEEee
Confidence            999999765443332233445567899999999 789999999999999987543 33222        1  45579999


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT  288 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~  288 (458)
                      +|+|++..++++++.|+.|++||+++.+....            ......|...|++++|+|+|++|++++ ++.|++||
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd  324 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKAS------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS  324 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCSSSC------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEE
T ss_pred             eecCCCceEEEEecCcceeeEEecccccccce------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEE
Confidence            99998767899999999999999988653221            122345788999999999999999988 55899999


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce-eecCccceeeeeEEEEecCCCcEEEEec-CCCe
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ-VYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGR  366 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~  366 (458)
                      +.++.....+..+.......                     ..... .+....   .+..+.+ ++++..+++++ .++.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~---~~~~~~~-~~d~~~~~~~~~~~~~  379 (435)
T 4e54_B          325 ASQWDCPLGLIPHPHRHFQH---------------------LTPIKAAWHPRY---NLIVVGR-YPDPNFKSCTPYELRT  379 (435)
T ss_dssp             SSSSSSEEEECCCCCCCCSS---------------------SCCCBCEECSSS---SCEEEEC-CCCTTSCCSSTTCCCC
T ss_pred             CCCCccceEEeccccccccc---------------------ceeEEEEEcCCC---CEEEEEE-cCCCCeEEEEecCCCE
Confidence            98754322211110000000                     00000 011111   1233344 55555544433 4468


Q ss_pred             EEEEEecCCeEEEEee-cCCceeeEE-EecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          367 IFIWKKKGGELIRVIE-ADRHVVNCI-EPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       367 i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      |++||..+++.+..+. +|...|.++ +|+|+|++||+|+ |+.|+||++++++..
T Consensus       380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            9999999999988875 677888887 6999999999876 789999999987643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.2e-43  Score=311.80  Aligned_cols=308  Identities=12%  Similarity=0.089  Sum_probs=249.9

Q ss_pred             eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712           57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ  134 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~  134 (458)
                      +..|.++|++++|+|++++|++++.|+.|++||+.+++  .+..+ .+|...|.+++|+|  ++++|++++.||.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEET--TTTEEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeC--CCCEEEEEcCCCeEEEEE
Confidence            45699999999999999999999999999999999886  66666 68999999999999  999999999999999999


Q ss_pred             cccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712          135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      +.+++......+..|...|.+++|+|++ .+|++++.|+.|++||++.++.........    ..  +...+.+++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~----~~--~~~~i~~~~~~~~  153 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIK----KP--IRSTVLSLDWHPN  153 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEEC----TT--CCSCEEEEEECTT
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeee----cc--cCCCeeEEEEcCC
Confidence            9887765555567899999999999999 789999999999999999877432222110    01  4557999999997


Q ss_pred             CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC
Q 012712          215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG  294 (458)
Q Consensus       215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~  294 (458)
                       +.+|++++.||.|++||++.........          ..            .|...                .     
T Consensus       154 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~----------~~------------~~~~~----------------~-----  189 (372)
T 1k8k_C          154 -SVLLAAGSCDFKCRIFSAYIKEVEERPA----------PT------------PWGSK----------------M-----  189 (372)
T ss_dssp             -SSEEEEEETTSCEEEEECCCTTTSCCCC----------CB------------TTBSC----------------C-----
T ss_pred             -CCEEEEEcCCCCEEEEEccccccccccc----------cc------------ccccc----------------c-----
Confidence             6899999999999999997654211100          00            00000                0     


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                       ........+.+|...  +.+++| +|++++|++++.||.|++||+.+
T Consensus       190 ---------------------------------~~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          190 ---------------------------------PFGELMFESSSSCGW--VHGVCF-SANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             ---------------------------------CTTCEEEECCCCSSC--EEEEEE-CSSSSEEEEEETTTEEEEEEGGG
T ss_pred             ---------------------------------chhhheEecCCCCCe--EEEEEE-CCCCCEEEEEeCCCEEEEEECCC
Confidence                                             002233445556654  889998 99999999999999999999999


Q ss_pred             CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc--ccc---------------------------------
Q 012712          375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA--ADR---------------------------------  419 (458)
Q Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~--~~~---------------------------------  419 (458)
                      ++++..+..|...|.+++|+|++++|+++ .|+.|++|++..  ++.                                 
T Consensus       234 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
T 1k8k_C          234 KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE  312 (372)
T ss_dssp             TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred             CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence            99999999999999999999999988887 899999999987  320                                 


Q ss_pred             ------ccc-ccccccEEEEEEe-cCC---cEEEeeecCCceEEEEE
Q 012712          420 ------ATL-PTNIEQVCFSIYS-ADY---WWSKSQNFSCSILLFEW  455 (458)
Q Consensus       420 ------~~~-~~~~~~v~~~~~s-~d~---~~l~s~~~d~~i~~w~~  455 (458)
                            ..+ .+|...|++++|. ++|   .+|++++.||.|++|+.
T Consensus       313 ~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          313 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             cCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                  222 4788899999966 676   99999999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-44  Score=325.60  Aligned_cols=369  Identities=14%  Similarity=0.143  Sum_probs=260.9

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEe-ecCCCceEEEEEec-CCCEEEEecCCC
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNT-DGDILISGSDDR   83 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~d~   83 (458)
                      |+|+++.+++++      .|+.. |+++                     ..+ .+|.+.|++++|+| ++++||+|+.|+
T Consensus        35 f~~~~~~~~~~~------~w~~~-g~~~---------------------~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg   86 (437)
T 3gre_A           35 FGPIQEIVRSPN------MGNLR-GKLI---------------------ATLMENEPNSITSSAVSPGETPYLITGSDQG   86 (437)
T ss_dssp             GCCCCCCCCCCC------GGGCC-CCEE---------------------EEECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred             cCCccccccccc------ccccc-ceEE---------------------eeeccCCCCceEEEEECCCCCCEEEEecCCc
Confidence            567777776655      37644 5444                     456 88999999999999 999999999999


Q ss_pred             eEEEEECCC---cceee-eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc---cccceee--------eeccc
Q 012712           84 RVILWDWKT---ERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL---ERGGVET--------KLLGK  148 (458)
Q Consensus        84 ~i~iwd~~~---~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~---~~~~~~~--------~~~~~  148 (458)
                      +|+|||+.+   +.... .....|...|.+++|+|  ++++|++++.||.|++||+.   .++....        ..+..
T Consensus        87 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~  164 (437)
T 3gre_A           87 VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN  164 (437)
T ss_dssp             EEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred             eEEEeECcccccCcccceeeeccCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence            999999876   43211 12126999999999999  99999999999999999995   3333221        11111


Q ss_pred             --cccceEEEE--EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          149 --HQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       149 --~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                        +...+.++.  ++|++ .+|++++.|+.|++||+++++....+....        +...|.+++|+|+ +.+|++|+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------h~~~v~~~~~s~~-~~~l~s~~~  234 (437)
T 3gre_A          165 FGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSP--------RHGAVSSICIDEE-CCVLILGTT  234 (437)
T ss_dssp             GSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCG--------GGCCEEEEEECTT-SCEEEEEET
T ss_pred             cccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCC--------CCCceEEEEECCC-CCEEEEEcC
Confidence              445566666  55677 789999999999999999998877775321        3447999999998 789999999


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC----CCCcEEEEecCC-cEEEEEccCCCCCCCCC
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS----DQSELLVSYNDE-FIYLFTQDMGLGPNPPP  299 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~  299 (458)
                      ||.|++||+++++...              .+...+...|.+++|+    |++.+|++++.+ .|++||+.++.....+.
T Consensus       235 dg~i~iwd~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          235 RGIIDIWDIRFNVLIR--------------SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             TSCEEEEETTTTEEEE--------------EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEEcCCccEEE--------------EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence            9999999999865322              1222456789999554    568899999855 79999998765333322


Q ss_pred             CCCccccccccccCCCCccccCCCCCCcccccCceeecC--ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG--HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL  377 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  377 (458)
                      .+....  ....+.+++..+            ....+.+  |..  .|.+++| + ++++|++|+.||.|++||+.+++.
T Consensus       301 ~~~~~~--~~~~~~~~~~~l------------~~~~~~~~~~~~--~v~~l~~-~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          301 NSDEQP--SMEHFLPIEKGL------------EELNFCGIRSLN--ALSTISV-S-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             SSSSCC--CGGGGSCBCSSG------------GGCCCCCCCSGG--GGCCEEE-E-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             cCCCCC--ccceeccccccc------------ccceecccccCC--ceEEEEE-C-CceEEEecCCCCeEEEEECCCccc
Confidence            211111  111122221111            1112334  554  4889998 8 789999999999999999999999


Q ss_pred             EEEeecCCc---eeeEEEecCCCCeEEEeecCCcEEEecCCcc-cccccccccccEEEEEEecC--CcEEEeeecCCceE
Q 012712          378 IRVIEADRH---VVNCIEPHPHSTVLASSGIESDIKILTPNAA-DRATLPTNIEQVCFSIYSAD--YWWSKSQNFSCSIL  451 (458)
Q Consensus       378 ~~~~~~~~~---~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~v~~~~~s~d--~~~l~s~~~d~~i~  451 (458)
                      ...+.+|..   ......+++...+++..        |+.... .......|...|++++|+++  +.+|++|+.||.|+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~  434 (437)
T 3gre_A          363 SKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG  434 (437)
T ss_dssp             CEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred             ceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEE
Confidence            999988643   45666677766665544        222222 23345568899999999999  78999999999999


Q ss_pred             EEE
Q 012712          452 LFE  454 (458)
Q Consensus       452 ~w~  454 (458)
                      ||+
T Consensus       435 iw~  437 (437)
T 3gre_A          435 IFQ  437 (437)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            995

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5e-43  Score=310.60  Aligned_cols=300  Identities=14%  Similarity=0.168  Sum_probs=238.8

Q ss_pred             eEeecCCCceEEEEEecCCCEE-EEecC---CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC---CeEEEEEcCC
Q 012712           55 AKLDKHRGCVNTVSFNTDGDIL-ISGSD---DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD---DRSIVTCAAD  127 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l-~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~d  127 (458)
                      ..+.+|.+.|.+++|+|++..+ ++++.   |+.|++||+.+++.......+|...|.+++|+|  +   +.+|++++.|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT--CCTTTCCEEEEETT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC--CCCCCceEEEecCC
Confidence            4567899999999999999654 56665   899999999998876555458999999999999  7   6999999999


Q ss_pred             CcEEEeeccccc-ceeeeeccccccceEEEEE------cCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCc
Q 012712          128 GQVRHAQILERG-GVETKLLGKHQGRAHKLAI------EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRN  199 (458)
Q Consensus       128 g~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~  199 (458)
                      |.|++||+.+++ ....  +.+|...|.++.|      +|++ .+|++++.||.|++||+++++ ....+......    
T Consensus        90 g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----  162 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYS--VKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE----  162 (357)
T ss_dssp             SCEEEECTTSCSSCSEE--ECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTS----
T ss_pred             CeEEEEeCCCCCccEEE--EEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCC----
Confidence            999999998877 4433  7789999999954      6777 689999999999999999887 45444332110    


Q ss_pred             ceeecceEEEE----ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC---C
Q 012712          200 YMTVVNLNAIA----IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---Q  272 (458)
Q Consensus       200 ~~~~~~v~~~~----~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~  272 (458)
                        ....+.+++    |+|+ +.++++++.||.|++||+++.+.                .....+...|.+++|+|   +
T Consensus       163 --~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          163 --NKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMAL----------------RWETNIKNGVCSLEFDRKDIS  223 (357)
T ss_dssp             --CCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEE----------------EEEEECSSCEEEEEESCSSSS
T ss_pred             --CCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCce----------------eeecCCCCceEEEEcCCCCCC
Confidence              133678888    7787 78999999999999999988753                12234577899999999   8


Q ss_pred             CcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       273 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                      +.+|++++ ++.|++||+.+......                                 .....+.+|...  |.+++| 
T Consensus       224 ~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------------------~~~~~~~~~~~~--v~~~~~-  267 (357)
T 3i2n_A          224 MNKLVATSLEGKFHVFDMRTQHPTKG---------------------------------FASVSEKAHKST--VWQVRH-  267 (357)
T ss_dssp             CCEEEEEESTTEEEEEEEEEEETTTE---------------------------------EEEEEEECCSSC--EEEEEE-
T ss_pred             CCEEEEECCCCeEEEEeCcCCCcccc---------------------------------eeeeccCCCcCC--EEEEEE-
Confidence            99988888 55899999987321111                                 001123367664  899998 


Q ss_pred             cCCCc-EEEEecCCCeEEEEEecCC-------------------eEEEEeecCCceeeEEEecCCCCeEE-EeecCCcEE
Q 012712          352 GPKCE-YVVSGSDCGRIFIWKKKGG-------------------ELIRVIEADRHVVNCIEPHPHSTVLA-SSGIESDIK  410 (458)
Q Consensus       352 s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~i~  410 (458)
                      +|+++ +|++++.||.|++||+.++                   +++..+.+|...|++++|+|++++|+ +++.|+.|+
T Consensus       268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~  347 (357)
T 3i2n_A          268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR  347 (357)
T ss_dssp             ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred             CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence            99998 8999999999999999754                   46778889999999999999999998 899999999


Q ss_pred             EecCCccc
Q 012712          411 ILTPNAAD  418 (458)
Q Consensus       411 iw~~~~~~  418 (458)
                      +|++.+.+
T Consensus       348 iw~~~~~~  355 (357)
T 3i2n_A          348 VLIVTKLN  355 (357)
T ss_dssp             EEEECC--
T ss_pred             EEECCCcc
Confidence            99998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.6e-42  Score=315.96  Aligned_cols=326  Identities=15%  Similarity=0.194  Sum_probs=261.3

Q ss_pred             eeeEeecCCCce-EEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           53 IYAKLDKHRGCV-NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        53 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      ....+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++.+..+ .+|.+.|.+++|+|  ++ .|++++.||.|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~--~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH--GG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECS--TT-EEEEEETTSCEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcC--CC-EEEEEeCCCCEE
Confidence            445788999885 56555  5779999999999999999999988877 79999999999998  77 999999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcC--CCCeEEEEecCCCeEEEEeCCCCCccceeeecc---------------c
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRP---------------I  194 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~  194 (458)
                      +||+.+++....  +.+|...|.+++|++  ++ .++++++.|+.|++||++++..........               .
T Consensus       187 vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          187 VWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             EEETTTTEEEEE--ECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             EEECCCCcEEEE--ECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            999998876654  788999999999984  55 789999999999999999876543211100               0


Q ss_pred             CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712          195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE  274 (458)
Q Consensus       195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  274 (458)
                      ....+  +...+.++  +++ +.++++++.||.|++||+++.+.               ......|...|.+++|+|+++
T Consensus       264 ~~~~~--~~~~v~~~--~~~-~~~l~~~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~  323 (464)
T 3v7d_B          264 GVLRG--HMASVRTV--SGH-GNIVVSGSYDNTLIVWDVAQMKC---------------LYILSGHTDRIYSTIYDHERK  323 (464)
T ss_dssp             EEECC--CSSCEEEE--EEE-TTEEEEEETTSCEEEEETTTTEE---------------EEEECCCSSCEEEEEEETTTT
T ss_pred             EEccC--ccceEEEE--cCC-CCEEEEEeCCCeEEEEECCCCcE---------------EEEecCCCCCEEEEEEcCCCC
Confidence            00111  33456665  454 57999999999999999987653               223445788999999999999


Q ss_pred             EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712          275 LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP  353 (458)
Q Consensus       275 ~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~  353 (458)
                      ++++++ ++.|++||+.+                                      ......+.+|...  +.++++ + 
T Consensus       324 ~l~sg~~dg~i~vwd~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~-  361 (464)
T 3v7d_B          324 RCISASMDTTIRIWDLEN--------------------------------------GELMYTLQGHTAL--VGLLRL-S-  361 (464)
T ss_dssp             EEEEEETTSCEEEEETTT--------------------------------------TEEEEEECCCSSC--EEEEEE-C-
T ss_pred             EEEEEeCCCcEEEEECCC--------------------------------------CcEEEEEeCCCCc--EEEEEE-c-
Confidence            999988 45899999987                                      4566778888875  888887 5 


Q ss_pred             CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc--cccccccEEE
Q 012712          354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT--LPTNIEQVCF  431 (458)
Q Consensus       354 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~~~~v~~  431 (458)
                       +++|++++.||.|++||+.+++...... |...+..++|+|++++|++++ ||.|++||+.+++...  ...|...|.+
T Consensus       362 -~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~  438 (464)
T 3v7d_B          362 -DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWS  438 (464)
T ss_dssp             -SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEE
T ss_pred             -CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEE
Confidence             5799999999999999999887766654 667788899999999999998 8999999999998763  5778888999


Q ss_pred             EEEecCCcEEEeeecCCceEEE
Q 012712          432 SIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       432 ~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      ++|+ +..++++++.|+.+.+|
T Consensus       439 v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          439 VNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEE
T ss_pred             EEec-CCEEEEEEEeCCeEEEE
Confidence            9997 44555666677765444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.6e-43  Score=336.44  Aligned_cols=294  Identities=14%  Similarity=0.220  Sum_probs=237.9

Q ss_pred             eeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcce----eeeeccCCCcceeEEEEccCCCCeEEEEEcC
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA  126 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  126 (458)
                      .....+++|.+.|++++|+|++ ++|+||+.|++|++|++.+...    ....+.+|...|.+++|+|  ++++|++++.
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~  450 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSW  450 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEET
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeC
Confidence            5556789999999999999875 7999999999999999976432    1223378999999999999  9999999999


Q ss_pred             CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      ||.|++||+.++.....  +.+|...|.+++|+|++ .+|++++.|++|++||+..........     ...+  +...|
T Consensus       451 Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~-----~~~~--h~~~v  520 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISE-----GGEG--HRDWV  520 (694)
T ss_dssp             TSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECS-----STTS--CSSCE
T ss_pred             CCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeecc-----CCCC--CCCcE
Confidence            99999999988776654  78899999999999999 678999999999999986543222111     1112  45579


Q ss_pred             EEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcE
Q 012712          207 NAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI  284 (458)
Q Consensus       207 ~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i  284 (458)
                      .+++|+|++ ...+++++.|+.|++||+++.+.               ......|...|.+++|+|++++|++++ ++.|
T Consensus       521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~---------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL---------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV  585 (694)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred             EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE---------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            999999974 25899999999999999987653               234556888999999999999999998 5589


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      ++||+.++                                      ..+..+..+.   .+.+++| +|++.+|++++ +
T Consensus       586 ~iwd~~~~--------------------------------------~~~~~~~~~~---~v~~~~~-sp~~~~l~~~~-~  622 (694)
T 3dm0_A          586 LLWDLAEG--------------------------------------KKLYSLEANS---VIHALCF-SPNRYWLCAAT-E  622 (694)
T ss_dssp             EEEETTTT--------------------------------------EEEECCBCSS---CEEEEEE-CSSSSEEEEEE-T
T ss_pred             EEEECCCC--------------------------------------ceEEEecCCC---cEEEEEE-cCCCcEEEEEc-C
Confidence            99999874                                      2223333332   3889998 99999888776 5


Q ss_pred             CeEEEEEecCCeEEEEeecCC-------------------ceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          365 GRIFIWKKKGGELIRVIEADR-------------------HVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~-------------------~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      +.|++||+.+++.+..+..+.                   ..+++++|+|+|++|++|+.||.|+||++.
T Consensus       623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            679999999999888775332                   126889999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-42  Score=310.72  Aligned_cols=314  Identities=14%  Similarity=0.141  Sum_probs=240.2

Q ss_pred             eeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADG  128 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg  128 (458)
                      +++.+.+.+|.+.|++++|+|++ ++|++|+.|+.|++||+.+++....+. .+|...|.+++|+|. ++++|++++.|+
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~  141 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIRG  141 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETTT
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCCC
Confidence            46677889999999999999999 999999999999999999888766653 369999999999982 358999999999


Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      .|++||+.............|...|.+++|+|++ .+|++++.|+.|++||++ ++....+..          +...|.+
T Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~----------h~~~v~~  209 (383)
T 3ei3_B          142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKL----------HKAKVTH  209 (383)
T ss_dssp             EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEEC----------SSSCEEE
T ss_pred             EEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEecc----------CCCcEEE
Confidence            9999999864333222233455889999999999 689999999999999994 554444432          4457999


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYL  286 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i  286 (458)
                      ++|+|++..++++++.|+.|++||+++.+....           ..... .|...|.+++|+| ++++|++++ ++.|++
T Consensus       210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS-----------YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC-----------EEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc-----------eEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence            999998544999999999999999998542111           11112 4788999999999 999999888 558999


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR  366 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~  366 (458)
                      ||+.+......+..+........                    ......+....   .+..++| +|++++  +++.||.
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~p~~---~~~~~~~-s~dg~~--s~s~d~~  331 (383)
T 3ei3_B          278 YSSYDWSKPDQIIIHPHRQFQHL--------------------TPIKATWHPMY---DLIVAGR-YPDDQL--LLNDKRT  331 (383)
T ss_dssp             EETTBTTSCSEEEECCBCCCTTS--------------------CCCCCEECSSS---SEEEEEC-BCCTTT--CTTCCCC
T ss_pred             EECCCCccccccccccccccccc--------------------cceEEeccCCC---CceEEEe-cCCccc--ccCCCCe
Confidence            99988654333221111000000                    00001111111   2556777 899988  8899999


Q ss_pred             EEEEEecCCeEEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          367 IFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       367 i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      |++||+.+++++..+.+  |...+..++|+|++++|++++ |+.|++|++++
T Consensus       332 i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          332 IDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            99999999999999987  456788889999999999997 99999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-42  Score=300.38  Aligned_cols=297  Identities=18%  Similarity=0.203  Sum_probs=244.0

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      .+++.+.+.+|.+.|++++| |++++|++++.||.|++||+.+++....+ ..|...|.+++|+|  ++++|++++.||.
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~   82 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDS--EKELLLFGGKDTM   82 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEET--TTTEEEEEETTSC
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECC--CCCEEEEecCCCe
Confidence            34567789999999999999 99999999999999999999888776666 68999999999999  9999999999999


Q ss_pred             EEEeecccccc-eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          130 VRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       130 i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      |++|++..... .....+..|...|.+++|+  + .++++++.|+.|++||  .++....+..          +...+.+
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~----------~~~~v~~  147 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQA----------HNASVWD  147 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEEC----------CSSCEEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEeccc----------CCCceeE
Confidence            99999876532 1223377899999999993  4 5789999999999999  4444444332          4457899


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT  288 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~  288 (458)
                      ++|.|.++.++++++.||.|++||.....                ......+...+.+++|+|++.+++.+.++.|++||
T Consensus       148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d  211 (313)
T 3odt_A          148 AKVVSFSENKFLTASADKTIKLWQNDKVI----------------KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD  211 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTEEE----------------EEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             EEEccCCCCEEEEEECCCCEEEEecCceE----------------EEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEE
Confidence            99988447899999999999999944321                22233367889999999999944444467899999


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                      +.+                                      ......+.+|...  +.+++| +|++ .|++++.||.|+
T Consensus       212 ~~~--------------------------------------~~~~~~~~~~~~~--i~~~~~-~~~~-~l~~~~~dg~v~  249 (313)
T 3odt_A          212 MHT--------------------------------------GDVLRTYEGHESF--VYCIKL-LPNG-DIVSCGEDRTVR  249 (313)
T ss_dssp             TTT--------------------------------------CCEEEEEECCSSC--EEEEEE-CTTS-CEEEEETTSEEE
T ss_pred             CCc--------------------------------------hhhhhhhhcCCce--EEEEEE-ecCC-CEEEEecCCEEE
Confidence            987                                      3456677777775  899998 9999 588999999999


Q ss_pred             EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc
Q 012712          369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT  424 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~  424 (458)
                      +||+.+++++..+..|...|.+++|+|+++ +++++.||.|++|++.+++......
T Consensus       250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          250 IWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             EECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             EEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence            999999999999999999999999999998 5678999999999999887664443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.8e-42  Score=301.64  Aligned_cols=286  Identities=16%  Similarity=0.203  Sum_probs=236.0

Q ss_pred             ccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccc---eeeeeccccccceEEEEEcCCCCeEEEEecCCCeE
Q 012712          100 HSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGG---VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV  175 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  175 (458)
                      +.+|.+.|++++|+|  + +++|+||+.||+|++||+.+.+.   .....+.+|...|.+++|+|++ .+|++++.|+.|
T Consensus        34 L~GH~~~V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i  110 (340)
T 4aow_A           34 LKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTL  110 (340)
T ss_dssp             ECCCSSCEEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             ECCccCCEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccc
Confidence            489999999999999  7 68999999999999999987553   2334578899999999999999 789999999999


Q ss_pred             EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712          176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN  255 (458)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  255 (458)
                      ++|+............          ....+..+.++|+ +.+|++++.|+.+++||.......              ..
T Consensus       111 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~l~s~s~d~~~~~~d~~~~~~~--------------~~  165 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVG----------HTKDVLSVAFSSD-NRQIVSGSRDKTIKLWNTLGVCKY--------------TV  165 (340)
T ss_dssp             EEEETTTTEEEEEEEC----------CSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEE--------------EE
T ss_pred             eEEeecccceeeeecC----------CCCceeEEEEeec-CccceeecCCCeEEEEEeCCCceE--------------EE
Confidence            9999988766555442          3335778889997 689999999999999998765421              22


Q ss_pred             cccccccceeEEEeCCCC--cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          256 LIGDEQVGITGLAFSDQS--ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       256 ~~~~~~~~i~~~~~~~~~--~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                      ....|...+..++|++++  .++++++ ++.|++||+.+                                      .+.
T Consensus       166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--------------------------------------~~~  207 (340)
T 4aow_A          166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--------------------------------------CKL  207 (340)
T ss_dssp             CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------------------------------TEE
T ss_pred             EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--------------------------------------Cce
Confidence            334567889999999875  4667766 55899999987                                      445


Q ss_pred             ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      ...+.+|...  |.+++| +|++++|++|+.||.|++||+.+.+++..+..+ ..|.+++|+|++.++ +++.|+.|++|
T Consensus       208 ~~~~~~h~~~--v~~~~~-s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iw  282 (340)
T 4aow_A          208 KTNHIGHTGY--LNTVTV-SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIW  282 (340)
T ss_dssp             EEEECCCSSC--EEEEEE-CTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEE
T ss_pred             eeEecCCCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEE
Confidence            6677788875  899998 999999999999999999999999999988855 579999999987655 56679999999


Q ss_pred             cCCccccc----------ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          413 TPNAADRA----------TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       413 ~~~~~~~~----------~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      |+.++...          ....|...|++++|+|||++|++|+.||.|+|||.-
T Consensus       283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            99876432          234677889999999999999999999999999963

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.4e-42  Score=313.28  Aligned_cols=306  Identities=21%  Similarity=0.294  Sum_probs=257.1

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV   85 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   85 (458)
                      +.+++++|++|+.||.|++||+.+++.+                     ..+.+|.+.|.+++|+  +++|++|+.|+.|
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~---------------------~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i  181 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVTGKCL---------------------RTLVGHTGGVWSSQMR--DNIIISGSTDRTL  181 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEE---------------------EECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             EEEcCCEEEEEECCCcEEEEECCCCcEE---------------------EEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence            4567899999999999999999988766                     4578999999999998  6699999999999


Q ss_pred             EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712           86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV  165 (458)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  165 (458)
                      ++||+.+++.+..+ .+|...|.++.|+    ++.+++++.||.|++||+.+++....  +.+|...+.++++  ++ ..
T Consensus       182 ~vwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~--~~-~~  251 (445)
T 2ovr_B          182 KVWNAETGECIHTL-YGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQY--DG-RR  251 (445)
T ss_dssp             EEEETTTTEEEEEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE--EECCSSCEEEEEE--CS-SC
T ss_pred             EEEECCcCcEEEEE-CCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE--EcCCcccEEEEEE--CC-CE
Confidence            99999999988777 7899999999995    45799999999999999998877655  7789999999999  44 57


Q ss_pred             EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712          166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG  245 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  245 (458)
                      +++++.||.|++||+++++....+..          +...+.+++|  + +.++++++.|+.|++||+++++..      
T Consensus       252 l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~--~-~~~l~~~~~d~~i~i~d~~~~~~~------  312 (445)
T 2ovr_B          252 VVSGAYDFMVKVWDPETETCLHTLQG----------HTNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCI------  312 (445)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECC----------CSSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEE------
T ss_pred             EEEEcCCCEEEEEECCCCcEeEEecC----------CCCceEEEEE--C-CCEEEEEeCCCeEEEEECCCCCEE------
Confidence            89999999999999998877666542          4457899999  3 579999999999999999887532      


Q ss_pred             CCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                               .....|...+.++.++  +.++++++ ++.|++||+.++                                
T Consensus       313 ---------~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~--------------------------------  349 (445)
T 2ovr_B          313 ---------HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG--------------------------------  349 (445)
T ss_dssp             ---------EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------------------------------
T ss_pred             ---------EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC--------------------------------
Confidence                     2334566778888774  56888877 568999999773                                


Q ss_pred             CCcccccCceeecC---ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe-----ecCCceeeEEEecCC
Q 012712          325 ANTDVRIAPQVYKG---HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHPH  396 (458)
Q Consensus       325 ~~~~~~~~~~~~~~---~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~  396 (458)
                            .....+.+   |..  .|.+++| +  +++|++|+.||.|++||+.+++.+..+     ..|.+.|.+++|+|+
T Consensus       350 ------~~~~~~~~~~~~~~--~v~~~~~-~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          350 ------QCLQTLQGPNKHQS--AVTCLQF-N--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             ------CEEEEECSTTSCSS--CEEEEEE-C--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             ------cEEEEEccCCCCCC--CEEEEEE-C--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence                  33445544   444  4888887 4  679999999999999999999999888     468889999999999


Q ss_pred             CCeEEEeecCCc----EEEecCCcc
Q 012712          397 STVLASSGIESD----IKILTPNAA  417 (458)
Q Consensus       397 ~~~l~s~~~d~~----i~iw~~~~~  417 (458)
                      +.+||+|+.||+    |.+||+...
T Consensus       419 ~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          419 KLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEEcccCCCCccEEEEEECCCC
Confidence            999999999998    999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-43  Score=313.93  Aligned_cols=317  Identities=14%  Similarity=0.163  Sum_probs=249.0

Q ss_pred             EeecCCCceEEEEEecC----CCEEEEecCCCeEEEEECCCcceeeeec----cCCCcceeEEEEccCCC----CeEEEE
Q 012712           56 KLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTD----DRSIVT  123 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~----~~~l~s  123 (458)
                      ...+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+.    ..|...|.+++|+|  +    +.+|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--DSNTSHPLLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--CTTTCCEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--CCCCCCCEEEE
Confidence            34589999999999984    4556666667799999999887655542    13668899999999  7    789999


Q ss_pred             EcCCCcEEEeecccccceeeeeccccccceEEEEEcC-CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712          124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT  202 (458)
Q Consensus       124 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  202 (458)
                      ++.||.|++||+.+++.+..  +.+|...|.+++|+| ++ .+|++++.||.|++||+++++....+....     .  +
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~--~  160 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVE-----G--H  160 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEECSTT-----S--C
T ss_pred             ecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEecccc-----c--c
Confidence            99999999999998877655  778999999999999 66 789999999999999999887766552111     1  5


Q ss_pred             ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                      ...|.+++|+|+ +.+|++++.||.|++||+++.+....               ..      ..+.++|++..++.....
T Consensus       161 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~---------------~~------~~~~~~~~~~~~~~~~~~  218 (366)
T 3k26_A          161 RDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNA---------------IK------ESYDYNPNKTNRPFISQK  218 (366)
T ss_dssp             SSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHH---------------HH------HHHTCCGGGCSSCCCCEE
T ss_pred             cCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccc---------------cc------eeEEecCCCCccccccee
Confidence            557999999997 78999999999999999987653211               00      023344544322221100


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                         .+                                          ........+|...  |.+++| +  +++|++++
T Consensus       219 ---~~------------------------------------------~~~~~~~~~~~~~--v~~~~~-~--~~~l~~~~  248 (366)
T 3k26_A          219 ---IH------------------------------------------FPDFSTRDIHRNY--VDCVRW-L--GDLILSKS  248 (366)
T ss_dssp             ---EC------------------------------------------CCSEEECSSCSSC--CCEEEE-E--TTEEEEEC
T ss_pred             ---ec------------------------------------------cCccccccCCcce--EEEEEE-c--CCEEEEEe
Confidence               00                                          1122334446554  889998 6  77999999


Q ss_pred             CCCeEEEEEecCCe--------------EEEEeecCCceeeEEEecCC--CCeEEEeecCCcEEEecCCccccc-----c
Q 012712          363 DCGRIFIWKKKGGE--------------LIRVIEADRHVVNCIEPHPH--STVLASSGIESDIKILTPNAADRA-----T  421 (458)
Q Consensus       363 ~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iw~~~~~~~~-----~  421 (458)
                      .||.|++||+.+++              .+..+..|...|.+++|+|+  +++|++++.||.|++|++.+++..     .
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  328 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT  328 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred             cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence            99999999998764              37888899999999999999  999999999999999999987543     4


Q ss_pred             cccc--cccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          422 LPTN--IEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       422 ~~~~--~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +..|  ...|.+++|+|++++|++++.||.|++||..
T Consensus       329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            5555  6889999999999999999999999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-44  Score=316.34  Aligned_cols=320  Identities=9%  Similarity=-0.015  Sum_probs=245.3

Q ss_pred             CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      +.++.++|||+++|+++.|++|+  |.++++                        .+++|...|.+++|+|+|       
T Consensus        18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------~l~gh~~~v~~V~FsPdg-------   64 (588)
T 2j04_A           18 KNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------DINCNSKNLFHVKEFPLE-------   64 (588)
T ss_dssp             SCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------CCSSBGGGTEEEEEECCC-------
T ss_pred             EEEEEECCCCCEEEEEcCCceee--cccccc------------------------eecCCCccEEEEEECCCC-------
Confidence            35788999999999999999999  644333                        246899999999999999       


Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc-----ceEE
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-----RAHK  155 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~v~~  155 (458)
                      .++.+.+|+.   +....+...|...|.+++|+|  +|.+||+++.||.|++|+...  .+.  .+. |..     .+.+
T Consensus        65 ~~~~~~~~~~---~~~~~~~~~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~--~l~-~~~~~~~~sv~s  134 (588)
T 2j04_A           65 FENKLDFELA---QQNGLLNSQPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLT--NLD-SKGNLSSRTYHC  134 (588)
T ss_dssp             CCCTTTTSCC---CSSCSSTTSCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEE--ECC-CSSCSTTTCEEE
T ss_pred             CcceEEEEeC---CCceEeecCCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eee--ecc-CCCccccccEEE
Confidence            4555555553   322222225688999999999  999999999999999999544  222  245 554     5999


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCCCCc-------cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT  228 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  228 (458)
                      ++|+|+| ++|++|+.||+|++||+.++..       ...+...    ..+  |...|.+++|+|+ +  +++++.|+.|
T Consensus       135 vafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~----~~g--h~~~V~sVawSPd-g--Laass~D~tV  204 (588)
T 2j04_A          135 FEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS----DAG--SKDWVTHIVWYED-V--LVAALSNNSV  204 (588)
T ss_dssp             EEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS----CTT--CCCCEEEEEEETT-E--EEEEETTCCE
T ss_pred             EEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc----ccc--ccccEEEEEEcCC-c--EEEEeCCCeE
Confidence            9999999 7899999999999999998753       1222211    112  3458999999997 5  8888999999


Q ss_pred             EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      ++||+...+....           ...+...|...|.+++|+  |+.||++++++|++||+.++                
T Consensus       205 rlWd~~~~~~~~~-----------~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~----------------  255 (588)
T 2j04_A          205 FSMTVSASSHQPV-----------SRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNY----------------  255 (588)
T ss_dssp             EEECCCSSSSCCC-----------EEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTT----------------
T ss_pred             EEEECCCCccccc-----------eeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCC----------------
Confidence            9999987652100           011223567899999999  68899888889999998863                


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE-ecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV  387 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (458)
                                            .......+|...  +..++| .+|+++.|+++++||+ ++|...              
T Consensus       256 ----------------------~~~~~~~gh~~~--V~~va~~~s~d~~~La~a~edG~-klw~~d--------------  296 (588)
T 2j04_A          256 ----------------------SISSLKTGSLEN--FHIIPLNHEKESTILLMSNKTSY-KVLLED--------------  296 (588)
T ss_dssp             ----------------------EEEEEECSCCSC--CCEEEETTCSSCEEEEECSSCEE-EEEESS--------------
T ss_pred             ----------------------eEEEEEcCCCce--EEEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------
Confidence                                  221222267764  777763 2899999999999999 999986              


Q ss_pred             eeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeec
Q 012712          388 VNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNF  446 (458)
Q Consensus       388 v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  446 (458)
                        .++++||+..+++.  |+++++|+...++...+. +...|.+++|||||+.+|+++.
T Consensus       297 --~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 --ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             --SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred             --cEEECCCceEEEEc--CCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence              26699999988875  999999998777655444 4777999999999999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-41  Score=302.09  Aligned_cols=295  Identities=14%  Similarity=0.153  Sum_probs=249.7

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD  179 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  179 (458)
                      +.+|...|++++|+|  ++++|++++.||.|++||+.+++....  +.+|...|.+++|+|++ .+|++++.||.|++||
T Consensus        28 l~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           28 LTGHERPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EECCSSCEEEEEECT--TSCEEEEEESSSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEE
T ss_pred             EEEeeceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEE
Confidence            378999999999999  999999999999999999988877655  78899999999999998 6899999999999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-----CeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      +++++....+.           +...+.+++|+|+ +.++++++.+     +.|++||++.............    ...
T Consensus       103 ~~~~~~~~~~~-----------~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~----~~~  166 (369)
T 3zwl_B          103 VSNGQCVATWK-----------SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE----EPI  166 (369)
T ss_dssp             TTTCCEEEEEE-----------CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS----SCS
T ss_pred             CCCCcEEEEee-----------cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeeccccc----cee
Confidence            99998877765           3447999999998 6899999988     9999999987754322111000    011


Q ss_pred             cccccccc--ceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712          255 NLIGDEQV--GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI  331 (458)
Q Consensus       255 ~~~~~~~~--~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (458)
                      .....+..  .+.+++|+|++++|++++ ++.|++||+.+.                                     ..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------------------------------~~  209 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------------------------------YE  209 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------------------------------TE
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------------------------------cE
Confidence            12223334  899999999999999888 558999998763                                     23


Q ss_pred             CceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC----
Q 012712          332 APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES----  407 (458)
Q Consensus       332 ~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----  407 (458)
                      ....+..|...  +.+++| +|++++|++++.||.|++||+.+++.+..+. +...+..++|+|+++++++++.++    
T Consensus       210 ~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  285 (369)
T 3zwl_B          210 YVDSIDLHEKS--ISDMQF-SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDV  285 (369)
T ss_dssp             EEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC----
T ss_pred             eEEEEecCCCc--eeEEEE-CCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceE
Confidence            45566667664  899998 9999999999999999999999999998887 777899999999999999999888    


Q ss_pred             ----------cEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          408 ----------DIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       408 ----------~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                                .+++|+..+++.. .+..|...|.+++|+|++++|++++.||.|++|++-
T Consensus       286 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          286 TTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             ---------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             EEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence                      8999999888665 567788999999999999999999999999999973

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-41  Score=307.13  Aligned_cols=283  Identities=16%  Similarity=0.251  Sum_probs=229.3

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR   84 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   84 (458)
                      .++++ .+||+|. |++|+|||..+|++...                   ..+.+|...|++|+|+|+|++||+|+.|+.
T Consensus       112 ~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-------------------~~~~~~~~~V~sv~fspdg~~lasgs~Dg~  170 (420)
T 4gga_A          112 DWSSG-NVLAVAL-DNSVYLWSASSGDILQL-------------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAE  170 (420)
T ss_dssp             EECTT-SEEEEEE-TTEEEEEETTTCCEEEE-------------------EECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             EECCC-CEEEEEe-CCEEEEEECCCCCEEEE-------------------EEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence            34554 4778776 99999999999987632                   235678899999999999999999999999


Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH  164 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  164 (458)
                      |+|||+.+++.+..+ .+|...+.++.+    ++..|++++.|+.+++|+........ ..+.+|...+..+.++|++ .
T Consensus       171 v~iWd~~~~~~~~~~-~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~-~~~~~h~~~~~~~~~~~~g-~  243 (420)
T 4gga_A          171 VQLWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG-R  243 (420)
T ss_dssp             EEEEETTTTEEEEEE-CCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-S
T ss_pred             EEEEEcCCCcEEEEE-eCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceee-EEecccccceeeeeecCCC-C
Confidence            999999999988877 789999998887    55799999999999999988765443 3478899999999999999 6


Q ss_pred             EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe--cCCCeEEEEecCCCccCCCc
Q 012712          165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA--GSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~  242 (458)
                      ++++++.|+.+++|+..+++........      ...+...|.+++|+|.+..+++++  +.|+.|++||+++++..   
T Consensus       244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~------~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~---  314 (420)
T 4gga_A          244 HLASGGNDNLVNVWPSAPGEGGWVPLQT------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL---  314 (420)
T ss_dssp             EEEEEETTSCEEEEESSCCSSCSCCSEE------ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE---
T ss_pred             eeeeeeccccceEEeeccccccceeeee------ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc---
Confidence            8999999999999999887643221100      011455789999999877777654  57899999998765310   


Q ss_pred             cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712          243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP  322 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (458)
                                                                                                      
T Consensus       315 --------------------------------------------------------------------------------  314 (420)
T 4gga_A          315 --------------------------------------------------------------------------------  314 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec--CCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeE
Q 012712          323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS--DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL  400 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  400 (458)
                                 ..+..+.   .+.++.| +|+++.+++++  .|+.|++||+.+++++.++.+|.+.|++++|+|||++|
T Consensus       315 -----------~~~~~~~---~v~~~~~-~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l  379 (420)
T 4gga_A          315 -----------SAVDAHS---QVCSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV  379 (420)
T ss_dssp             -----------EEEECSS---CEEEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             -----------eeecccc---ceeeeee-cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE
Confidence                       0111111   2667777 88888887654  78999999999999999999999999999999999999


Q ss_pred             EEeecCCcEEEecCCcccc
Q 012712          401 ASSGIESDIKILTPNAADR  419 (458)
Q Consensus       401 ~s~~~d~~i~iw~~~~~~~  419 (458)
                      |||+.|++|+||++.....
T Consensus       380 ~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          380 ASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             EEEETTTEEEEECCSCSSC
T ss_pred             EEEecCCeEEEEECCCCCc
Confidence            9999999999999976543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-41  Score=311.79  Aligned_cols=309  Identities=20%  Similarity=0.241  Sum_probs=249.7

Q ss_pred             CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEE
Q 012712            7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI   86 (458)
Q Consensus         7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   86 (458)
                      .+++.+|++|+.||.|++||+.+++.+                     ..+.+|.+.|.+++|+|++ +|++|+.|++|+
T Consensus       129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~---------------------~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          129 QFEDNYVITGADDKMIRVYDSINKKFL---------------------LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEE---------------------EEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             EECCCEEEEEcCCCcEEEEECCCCcEE---------------------EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            446789999999999999999988765                     4578999999999999988 999999999999


Q ss_pred             EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee---------------------eee
Q 012712           87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE---------------------TKL  145 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~---------------------~~~  145 (458)
                      +||+++++.+..+ .+|...|.+++|++..++.++++++.||.|++||+.+.....                     ...
T Consensus       187 vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          187 VWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            9999999987777 789999999999954488999999999999999998765331                     234


Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      +.+|...+.++  ++++ .++++++.|+.|++||+++++....+..          +...+.+++|+|+ +.++++|+.|
T Consensus       266 ~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~sg~~d  331 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSG----------HTDRIYSTIYDHE-RKRCISASMD  331 (464)
T ss_dssp             ECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEETT-TTEEEEEETT
T ss_pred             ccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEEEEecC----------CCCCEEEEEEcCC-CCEEEEEeCC
Confidence            66788888877  4556 6799999999999999999887766543          4457999999997 7899999999


Q ss_pred             CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcc
Q 012712          226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVS  304 (458)
Q Consensus       226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~  304 (458)
                      |.|++||+++++.               ......|...|.+++|+  +.+|++++ ++.|++||+.+..           
T Consensus       332 g~i~vwd~~~~~~---------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~-----------  383 (464)
T 3v7d_B          332 TTIRIWDLENGEL---------------MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-----------  383 (464)
T ss_dssp             SCEEEEETTTTEE---------------EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-----------
T ss_pred             CcEEEEECCCCcE---------------EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc-----------
Confidence            9999999988763               23345578899999997  46788777 5689999998631           


Q ss_pred             ccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE-eec
Q 012712          305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEA  383 (458)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~  383 (458)
                                                 ...... +..  .+..++| +|++++|++|+ ||.|++||+.+++.+.. +..
T Consensus       384 ---------------------------~~~~~~-~~~--~~~~~~~-~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~  431 (464)
T 3v7d_B          384 ---------------------------RKFSYH-HTN--LSAITTF-YVSDNILVSGS-ENQFNIYNLRSGKLVHANILK  431 (464)
T ss_dssp             ---------------------------EEEEEE-CTT--CCCEEEE-EECSSEEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred             ---------------------------eeeeec-CCC--CccEEEE-EeCCCEEEEec-CCeEEEEECCCCcEEehhhcc
Confidence                                       111111 222  2556676 99999999998 89999999999999886 667


Q ss_pred             CCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          384 DRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      |...|.+++|+ +..++++++.||.+.+|-
T Consensus       432 ~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          432 DADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            88999999997 345556666677665553

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.5e-41  Score=326.54  Aligned_cols=302  Identities=17%  Similarity=0.202  Sum_probs=231.3

Q ss_pred             CCCCCC-CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         4 ~~~~~~-~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      +.++|+ +.+|+||+.|++|+|||+.++.....                ...+.+.+|.+.|.+++|+|++++|++|+.|
T Consensus       388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~----------------~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYG----------------VAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             EECCTTCCSEEEEEETTSEEEEEECCCSTTCSC----------------EEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEecCCCCCEEEEEeCCCcEEEEEccCCCcccc----------------cccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            456665 57899999999999999986543211                2235688999999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee-eeccccccceEEEEEcCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  161 (458)
                      ++|+|||+.++.....+ .+|...|.+++|+|  ++++|++++.|++|++||......... ....+|...|.+++|+|+
T Consensus       452 g~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRF-VGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             SEEEEEETTTTEEEEEE-ECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             CcEEEEECCCCcceeEE-eCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            99999999999887777 79999999999999  999999999999999999865432221 123578899999999998


Q ss_pred             C-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712          162 S-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG  240 (458)
Q Consensus       162 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  240 (458)
                      + ...+++++.|+.|++||+++++....+..          |...|.+++|+|+ +.+|++|+.||.|++||+++++...
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------HTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcC----------CCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEE
Confidence            6 24799999999999999998877665542          4557999999998 7899999999999999999876422


Q ss_pred             CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                      .                ..+...+.+++|+|++.++++++++.|++||+.++.....+..........            
T Consensus       598 ~----------------~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~------------  649 (694)
T 3dm0_A          598 S----------------LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK------------  649 (694)
T ss_dssp             C----------------CBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-----------------
T ss_pred             E----------------ecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccc------------
Confidence            1                113457999999999999999999999999998754322211000000000            


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                               ...............+.+++| +|+|++|++|+.||+|++|++.
T Consensus       650 ---------~~~~~~~~~~~~~~~~~~l~~-spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          650 ---------ADNSGPAATKRKVIYCTSLNW-SADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             --------------------CCCCEEEEEE-CTTSSEEEEEETTSEEEEEEC-
T ss_pred             ---------ccccccccCCceeEEeeeEEE-cCCCCEEEEEcCCCeEEEEecc
Confidence                     000000000111123788998 9999999999999999999984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-42  Score=310.37  Aligned_cols=304  Identities=14%  Similarity=0.116  Sum_probs=228.2

Q ss_pred             eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc--ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712           57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ  134 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~  134 (458)
                      ++.|.++|++++|+|++++||+++.|+.|++||+.++  +.+..+ .+|...|.+++|+|  ++++|++++.|+.|++||
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~--~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAP--KSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECT--TTCCEEEEETTSSEEEC-
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeC--CCCEEEEEeCCCeEEEEE
Confidence            4557789999999999999999999999999999987  555555 78999999999999  999999999999999999


Q ss_pred             ccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc---cceeeecccCCCCcceeecceEEEE
Q 012712          135 ILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       135 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      +.+++ ......+..|...|.+++|+|++ .+|++++.|+.|++||+++++.   ...+...         +...|.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~~~v~~~~  153 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRP---------LRSTILSLD  153 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSS---------CCSCEEEEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecc---------cCCCeEEEE
Confidence            98876 22334477899999999999998 6889999999999999998864   3333210         345799999


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEcc
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD  290 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~  290 (458)
                      |+|+ +.+|++++.|+.|++||++..+......          .               .+.+..+              
T Consensus       154 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~---------------~~~~~~~--------------  193 (377)
T 3dwl_C          154 WHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPE----------A---------------SVWGSRL--------------  193 (377)
T ss_dssp             ECTT-SSEEEEEESSSCEEEEEECCSSCC-CCC----------S---------------CSSCSCC--------------
T ss_pred             EcCC-CCEEEEEeCCCEEEEEEEEecccCCCcc----------c---------------ccccccc--------------
Confidence            9997 7899999999999999998654221100          0               0000000              


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                                                           ........+ +|...  |.+++| +|++++|++++.||.|++|
T Consensus       194 -------------------------------------~~~~~~~~~-~~~~~--v~~~~~-sp~~~~l~~~~~d~~i~iw  232 (377)
T 3dwl_C          194 -------------------------------------PFNTVCAEY-PSGGW--VHAVGF-SPSGNALAYAGHDSSVTIA  232 (377)
T ss_dssp             -------------------------------------CEEEEEECC-CCSSS--EEEEEE-CTTSSCEEEEETTTEEC-C
T ss_pred             -------------------------------------chhhhhhcc-cCCce--EEEEEE-CCCCCEEEEEeCCCcEEEE
Confidence                                                 001222333 56554  899998 9999999999999999999


Q ss_pred             EecCCeE----EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc-c--------------------------
Q 012712          371 KKKGGEL----IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD-R--------------------------  419 (458)
Q Consensus       371 d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~-~--------------------------  419 (458)
                      |+.+++.    +..+.+|...|.+++|+|++++|++++.++.+ +|+..... .                          
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (377)
T 3dwl_C          233 YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE  311 (377)
T ss_dssp             EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC
T ss_pred             ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccc
Confidence            9999887    78889999999999999999999999877666 55554111 0                          


Q ss_pred             ----------c----------------ccccccccEEEEEEecCC-c---EEEeeecCCceEEEEE
Q 012712          420 ----------A----------------TLPTNIEQVCFSIYSADY-W---WSKSQNFSCSILLFEW  455 (458)
Q Consensus       420 ----------~----------------~~~~~~~~v~~~~~s~d~-~---~l~s~~~d~~i~~w~~  455 (458)
                                .                ....|...|+++++.++. .   .++|++.||.|++||+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                      0                011288889999976554 3   6999999999999984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.1e-43  Score=312.26  Aligned_cols=251  Identities=11%  Similarity=0.105  Sum_probs=192.7

Q ss_pred             CCCCCCCCCCCeEEEeeCCCcEEEEEcccc--ccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE
Q 012712            1 MDDASNNNNNKRARTSVDKALVDVWLRELG--QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS   78 (458)
Q Consensus         1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   78 (458)
                      |..+.|+|++++|++|+.|+.|+|||+.++  +.+                     ..+.+|.+.|.+++|+|++++|++
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~---------------------~~~~~h~~~v~~~~~s~~~~~l~s   72 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA---------------------RTFSDHDKIVTCVDWAPKSNRIVT   72 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC---------------------CCBCCCSSCEEEEEECTTTCCEEE
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE---------------------EEEecCCceEEEEEEeCCCCEEEE
Confidence            346789999999999999999999999976  333                     457899999999999999999999


Q ss_pred             ecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-eeeeccc-cccce
Q 012712           79 GSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGK-HQGRA  153 (458)
Q Consensus        79 ~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~-~~~~v  153 (458)
                      ++.|+.|++||+.+++   ....+ .+|...|.+++|+|  ++++|++++.|+.|++||+.+++.. ....+.. |...|
T Consensus        73 ~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v  149 (377)
T 3dwl_C           73 CSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI  149 (377)
T ss_dssp             EETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCE
T ss_pred             EeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCe
Confidence            9999999999999877   44444 68999999999999  9999999999999999999887631 1122555 99999


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceee----------ecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT----------CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      .+++|+|++ .+|++++.|+.|++||++..+......          .......   .+...|.+++|+|+ +.+|++++
T Consensus       150 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~-~~~l~~~~  224 (377)
T 3dwl_C          150 LSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPS-GNALAYAG  224 (377)
T ss_dssp             EEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTT-SSCEEEEE
T ss_pred             EEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCC-CCEEEEEe
Confidence            999999998 789999999999999997543211100          0000001   15567999999998 68999999


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~  291 (458)
                      .||.|++||+++.+...           ........|...|.+++|+|++++|++++++.+.+|+...
T Consensus       225 ~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~  281 (377)
T 3dwl_C          225 HDSSVTIAYPSAPEQPP-----------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE  281 (377)
T ss_dssp             TTTEEC-CEECSTTSCE-----------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred             CCCcEEEEECCCCCCcc-----------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence            99999999999875310           0022344577889999999999999999999888998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-41  Score=300.09  Aligned_cols=289  Identities=10%  Similarity=0.077  Sum_probs=220.1

Q ss_pred             CcceeEEEEccCCCCeEEEEEcCCC-------cEEEeecccccce--------eeeeccccccceEEEEEcCCCCeEEEE
Q 012712          104 NDNVFQAKIMPFTDDRSIVTCAADG-------QVRHAQILERGGV--------ETKLLGKHQGRAHKLAIEPGSPHVFYT  168 (458)
Q Consensus       104 ~~~i~~~~~~~~~~~~~l~s~~~dg-------~i~vw~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s  168 (458)
                      ..+|++++|+|  |+++|++|+.+.       .|++|++......        ....+..|...+.+++++++   .+++
T Consensus        14 g~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~---~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG---IILV   88 (365)
T ss_dssp             SSCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT---EEEE
T ss_pred             CCCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC---EEEE
Confidence            45899999999  999999987543       5999998765431        12346678888888877653   3454


Q ss_pred             e-----------cCCCeEEEEeCCCCCcccee-eecccCCCCcceeecceEEEEECCCCCcEEE--EecCCCeEEEEecC
Q 012712          169 C-----------GEDGLVQHFDLRTGAATELF-TCRPIDDRRNYMTVVNLNAIAIDPRNANLFA--VAGSDEYTRLYDIR  234 (458)
Q Consensus       169 ~-----------~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~--~~~~dg~i~i~d~~  234 (458)
                      +           +.|+.+++|++......... ......  ........+.+++|+|| +++++  +++.|+.|++||++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~fSpD-g~~la~as~~~d~~i~iwd~~  165 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFD--ASTNADDYTKLVYISRE-GTVAAIASSKVPAIMRIIDPS  165 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSS--CCCCTTCCEEEEEECTT-SSCEEEEESCSSCEEEEEETT
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeecee--ecCCcccCEEEEEEcCC-CCEEEEEECCCCCEEEEeECC
Confidence            4           45788999998765432221 111111  11113345789999998 56765  45578999999999


Q ss_pred             CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      +.+...                ...|...|.+++|+|+|+++++++++.+.+|+..++..                    
T Consensus       166 ~~~~~~----------------~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~--------------------  209 (365)
T 4h5i_A          166 DLTEKF----------------EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC--------------------  209 (365)
T ss_dssp             TTEEEE----------------EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE--------------------
T ss_pred             CCcEEE----------------EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc--------------------
Confidence            876321                11356789999999999999999999999998776321                    


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC----eEEEEEecCCeE----EEEeecCCc
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG----RIFIWKKKGGEL----IRVIEADRH  386 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~  386 (458)
                                      .......+|..  .+.+++| +|+++++++++.|+    .+++|++.....    ...+.+|..
T Consensus       210 ----------------~~~~~~~~~~~--~v~~v~f-spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  270 (365)
T 4h5i_A          210 ----------------IARKTDFDKNW--SLSKINF-IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK  270 (365)
T ss_dssp             ----------------EEEECCCCTTE--EEEEEEE-EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred             ----------------eeeeecCCCCC--CEEEEEE-cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence                            11122334544  4899998 99999999998887    688999877653    356778999


Q ss_pred             eeeEEEecCCCCeEEEeecCCcEEEecCCccccc-c-cccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          387 VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-T-LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~-~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .|++++|+|||++||+|+.|++|+|||+.+++++ . +.+|...|++++|||||++|||++.|++|+||+.
T Consensus       271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            9999999999999999999999999999998776 3 4679999999999999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-41  Score=303.82  Aligned_cols=297  Identities=10%  Similarity=0.052  Sum_probs=234.2

Q ss_pred             CCcceeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712           91 KTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC  169 (458)
Q Consensus        91 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  169 (458)
                      ........+ .+|...|++++|+|  ++ ++|++++.||.|++||+.+++........+|...|.+++|+|++..+|+++
T Consensus        61 ~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           61 KSYKLHRTA-SPFDRRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             TTCEEEEEE-CCCSSCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             cccceEEec-cCCCCCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            344444444 78999999999999  88 899999999999999999887766644557999999999999444889999


Q ss_pred             cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712          170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD  249 (458)
Q Consensus       170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  249 (458)
                      +.|+.|++||++. .....+.....       +...+.+++|+|+ +.+|++++.|+.|++||++...            
T Consensus       138 ~~d~~i~iwd~~~-~~~~~~~~~~~-------~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~------------  196 (383)
T 3ei3_B          138 SIRGATTLRDFSG-SVIQVFAKTDS-------WDYWYCCVDVSVS-RQMLATGDSTGRLLLLGLDGHE------------  196 (383)
T ss_dssp             ETTTEEEEEETTS-CEEEEEECCCC-------SSCCEEEEEEETT-TTEEEEEETTSEEEEEETTSCE------------
T ss_pred             eCCCEEEEEECCC-CceEEEeccCC-------CCCCeEEEEECCC-CCEEEEECCCCCEEEEECCCCE------------
Confidence            9999999999985 33333332111       3357999999998 7899999999999999995321            


Q ss_pred             CcCCCccccccccceeEEEeCCCCc-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712          250 YFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT  327 (458)
Q Consensus       250 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (458)
                          ......|...|.+++|+|+++ +|++++ ++.|++||+.+....                                
T Consensus       197 ----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------------------------------  240 (383)
T 3ei3_B          197 ----IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--------------------------------  240 (383)
T ss_dssp             ----EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--------------------------------
T ss_pred             ----EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--------------------------------
Confidence                233445788999999999998 888888 558999999874221                                


Q ss_pred             ccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCCeEEEEeecCC-----------------ceee
Q 012712          328 DVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-----------------HVVN  389 (458)
Q Consensus       328 ~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~~v~  389 (458)
                        ......+ +|..  .+.+++| +| ++++|++++.|+.|++||+.+++.+..+.+|.                 ..+.
T Consensus       241 --~~~~~~~-~~~~--~v~~~~~-s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  314 (383)
T 3ei3_B          241 --NSYIAEM-PHEK--PVNAAYF-NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI  314 (383)
T ss_dssp             --TCEEEEE-ECSS--CEEEEEE-CTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred             --cceEEEe-cCCC--ceEEEEE-cCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence              1122333 4555  4899999 99 99999999999999999999988777776553                 2344


Q ss_pred             EEEecCCCCeEEEeecCCcEEEecCCccccc-cccc--ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          390 CIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPT--NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~--~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      .++|+|++++  +++.|+.|++||+.+++.. .+..  +...+..++|+|++.+|++++ |+.|++||.-
T Consensus       315 ~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          315 VAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             EEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             EEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence            5777788777  7889999999999988765 4443  455677889999999999997 9999999963

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.4e-41  Score=288.46  Aligned_cols=269  Identities=16%  Similarity=0.246  Sum_probs=201.8

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc--ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..+  +.+..+ .+|.+.|.+++|+|..++++|++++.|++|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            457899999999999999999999999999999999753  444555 79999999999986213789999999999999


Q ss_pred             eecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      ||+.+++......+..|...|.+++|+|+  + .+|++++.|+.|++||++++........      .+  +...|.+++
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~------~~--h~~~v~~~~  152 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIII------DA--HAIGVNSAS  152 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEE------EC--CSSCEEEEE
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeee------ec--ccCccceEe
Confidence            99987754333447789999999999997  5 6899999999999999987643211111      11  445799999


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEc
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ  289 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~  289 (458)
                      |+|+. ..-     ++        ..                               ...+++++|++++ ++.|++||+
T Consensus       153 ~~p~~-~~~-----~~--------~~-------------------------------~~~~~~~~l~sgs~D~~v~lwd~  187 (297)
T 2pm7_B          153 WAPAT-IEE-----DG--------EH-------------------------------NGTKESRKFVTGGADNLVKIWKY  187 (297)
T ss_dssp             ECCCC---------------------------------------------------------CCEEEEEETTSCEEEEEE
T ss_pred             ecCCc-ccc-----cc--------cC-------------------------------CCCCCcceEEEEcCCCcEEEEEE
Confidence            99962 100     00        00                               0012345566655 345677766


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC---cEEEEecCCCe
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGR  366 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~---~~l~~~~~dg~  366 (458)
                      .++...                                  ......+.+|...  |.+++| +|++   ++|++++.|++
T Consensus       188 ~~~~~~----------------------------------~~~~~~l~~H~~~--V~~v~~-sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          188 NSDAQT----------------------------------YVLESTLEGHSDW--VRDVAW-SPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             ETTTTE----------------------------------EEEEEEECCCSSC--EEEEEE-CCCCSSSEEEEEEETTSC
T ss_pred             cCCCce----------------------------------EEEEEEecCCCCc--eEEEEE-CCCCCCceEEEEEECCCc
Confidence            542100                                  1133456778774  899999 9984   89999999999


Q ss_pred             EEEEEecCCe---EEEEe--ecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          367 IFIWKKKGGE---LIRVI--EADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       367 i~iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      |++||+.+..   ....+  ..|...|.+++|+|++++||+++.|+.|++|+..
T Consensus       231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999997643   22333  4678899999999999999999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1e-41  Score=309.05  Aligned_cols=302  Identities=14%  Similarity=0.084  Sum_probs=243.6

Q ss_pred             ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      .+++++|+|++++|++++.|+.|++||+.+++....+ ..| ..+....|+|  ++++|++++.||.|++||+.+++...
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~  133 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQRE  133 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECS--SSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEec--CCCEEEEEECCCCEEEEeCCCcceee
Confidence            3458999999999999999999999999988775554 344 4455557888  99999999999999999998776554


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      .  +..|...|.+++|+|++ .+|++++.|+.|++||+++++....+..          +...|.+++|+|+ +.+|+++
T Consensus       134 ~--~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~  199 (420)
T 3vl1_A          134 I--DQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIG----------HRATVTDIAIIDR-GRNVLSA  199 (420)
T ss_dssp             E--TTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEEC----------CSSCEEEEEEETT-TTEEEEE
T ss_pred             e--cccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcC----------CCCcEEEEEEcCC-CCEEEEE
Confidence            3  77899999999999998 6899999999999999999987776653          4557999999998 7899999


Q ss_pred             cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712          223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      +.|+.|++||+++++.....            .....+...+.+++|.|.+...                          
T Consensus       200 ~~d~~v~iwd~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~--------------------------  241 (420)
T 3vl1_A          200 SLDGTIRLWECGTGTTIHTF------------NRKENPHDGVNSIALFVGTDRQ--------------------------  241 (420)
T ss_dssp             ETTSCEEEEETTTTEEEEEE------------CBTTBTTCCEEEEEEEECCCSS--------------------------
T ss_pred             cCCCcEEEeECCCCceeEEe------------ecCCCCCCCccEEEEecCCcce--------------------------
Confidence            99999999999987643221            1112345677888877654211                          


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE  382 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  382 (458)
                                                      ....+..  .+.+++| +|++++|++|+.||.|++||+.+++.+..+.
T Consensus       242 --------------------------------~~~~~~~--~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          242 --------------------------------LHEISTS--KKNNLEF-GTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             --------------------------------CGGGCCC--CCCTTCS-SCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             --------------------------------eeecccC--cccceEE-cCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence                                            0111112  2667777 9999999999999999999999998877764


Q ss_pred             -cCCceeeEEEecCCCC-eEEEeecCCcEEEecCCcccc--ccccc-ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          383 -ADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADR--ATLPT-NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       383 -~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~--~~~~~-~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                       .|...|.+++|+|+++ +|++++.||.|++||+.+++.  ..+.. |...+..+ ++|++.+|++++.|+.|++|+.-
T Consensus       287 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          287 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEEC
T ss_pred             cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEecc
Confidence             5788999999999999 999999999999999998754  34444 55567777 55688999999999999999964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-42  Score=312.85  Aligned_cols=293  Identities=16%  Similarity=0.251  Sum_probs=237.1

Q ss_pred             CceEEEEEecCCC-EEEEe----------cCCCeEEEEECCCcce---eeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           62 GCVNTVSFNTDGD-ILISG----------SDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        62 ~~v~~~~~s~~~~-~l~s~----------~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      ..|.+++|+|+++ +|+++          +.|+.|++||+.+++.   +..  ..|...|.+++|+|  ++++|++++.|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~--~~~~l~~~~~d   88 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSH--NNKIIAGALDN   88 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECS--SSSCEEEEESS
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECC--CCCeEEEEccC
Confidence            4688999999987 99999          8899999999998763   333  36889999999999  99999999999


Q ss_pred             CcEEEeecccc--cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC------ccceeeecccCCCCc
Q 012712          128 GQVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA------ATELFTCRPIDDRRN  199 (458)
Q Consensus       128 g~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~  199 (458)
                      |.|++|++...  .......+..|...|.+++|+|++..+|++++.|+.|++||+++++      ....+.     ....
T Consensus        89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~~~~  163 (416)
T 2pm9_A           89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-----QSMS  163 (416)
T ss_dssp             SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-----CSCC
T ss_pred             CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc-----cccC
Confidence            99999999872  1112234788999999999999844789999999999999999876      222111     0111


Q ss_pred             ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                        +...+.+++|+|+++.++++++.|+.|++||+++.+..                         ..+...         
T Consensus       164 --~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-------------------------~~~~~~---------  207 (416)
T 2pm9_A          164 --SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV-------------------------IHLSYT---------  207 (416)
T ss_dssp             --SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE-------------------------EEECCC---------
T ss_pred             --CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc-------------------------eEEecc---------
Confidence              44578999999986789999999999999999775421                         000000         


Q ss_pred             cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEE
Q 012712          280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYV  358 (458)
Q Consensus       280 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l  358 (458)
                                                                            ....+|..  .+.+++| +|++ .++
T Consensus       208 ------------------------------------------------------~~~~~~~~--~v~~~~~-~~~~~~~l  230 (416)
T 2pm9_A          208 ------------------------------------------------------SPNSGIKQ--QLSVVEW-HPKNSTRV  230 (416)
T ss_dssp             ------------------------------------------------------CCSSCCCC--CEEEEEE-CSSCTTEE
T ss_pred             ------------------------------------------------------ccccccCC--ceEEEEE-CCCCCCEE
Confidence                                                                  00012233  3889998 9997 689


Q ss_pred             EEecCCC---eEEEEEecCC-eEEEEee-cCCceeeEEEecC-CCCeEEEeecCCcEEEecCCccccc-ccccccccEEE
Q 012712          359 VSGSDCG---RIFIWKKKGG-ELIRVIE-ADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCF  431 (458)
Q Consensus       359 ~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~  431 (458)
                      ++++.|+   .|++||+.++ +++..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.. .+..|...|.+
T Consensus       231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~  310 (416)
T 2pm9_A          231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK  310 (416)
T ss_dssp             EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCC
T ss_pred             EEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEE
Confidence            9999998   9999999986 6777888 8999999999999 9999999999999999999988665 56778889999


Q ss_pred             EEEecCC-cEEEeeecCCceEEEEEe
Q 012712          432 SIYSADY-WWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       432 ~~~s~d~-~~l~s~~~d~~i~~w~~~  456 (458)
                      ++|+|++ .+|++++.|+.|++|+.-
T Consensus       311 ~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          311 TKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             EEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEcc
Confidence            9999999 899999999999999963

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-41  Score=307.80  Aligned_cols=291  Identities=10%  Similarity=0.070  Sum_probs=227.0

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      .+|...|++++|+|. ++++||+|+.||.|+|||+.+++......+.+|.+.|++++|+|.+..+|++++.||+|++||+
T Consensus       116 ~~~~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          116 APFDRRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             EECSSCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            568889999999982 4678999999999999999887766555577899999999999965478999999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      +++....... .       +.....+.+++|+|+ +.+|++|+.||.|++||++...                ......|
T Consensus       195 ~~~~~~~~~~-~-------~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~----------------~~~~~~h  249 (435)
T 4e54_B          195 KGNILRVFAS-S-------DTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGKE----------------LWNLRMH  249 (435)
T ss_dssp             TSCEEEEEEC-C-------SSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSCB----------------CCCSBCC
T ss_pred             cCCceeEEec-c-------CCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcce----------------eEEEecc
Confidence            8654322221 1       113345788999998 7899999999999999987543                1234457


Q ss_pred             ccceeEEEeCCCCc-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          261 QVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       261 ~~~i~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                      ...|.+++|+|++. ++++++ ++.|++||+.+.....                                   ......+
T Consensus       250 ~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-----------------------------------~~~~~~~  294 (435)
T 4e54_B          250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-----------------------------------SFLYSLP  294 (435)
T ss_dssp             SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-----------------------------------CCSBCCB
T ss_pred             cceEEeeeecCCCceEEEEecCcceeeEEecccccccc-----------------------------------eEEEeee
Confidence            88999999999986 677777 5689999998743221                                   1223345


Q ss_pred             ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc------eeeEEEecCCCCeEEEee--------
Q 012712          339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH------VVNCIEPHPHSTVLASSG--------  404 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~s~~--------  404 (458)
                      |...  |.+++| +|+|++|++++.||.|++||+.+++....+..|..      .+....|+|++.++++++        
T Consensus       295 h~~~--v~~~~~-spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  371 (435)
T 4e54_B          295 HRHP--VNAACF-SPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKS  371 (435)
T ss_dssp             CSSC--EEECCB-CTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred             cccc--ccceeE-CCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence            6664  899998 99999999999999999999999988887766643      234556777777666653        


Q ss_pred             ----cCCcEEEecCCcccccc--cccccccEEEE-EEecCCcEEEeeecCCceEEEEEe
Q 012712          405 ----IESDIKILTPNAADRAT--LPTNIEQVCFS-IYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       405 ----~d~~i~iw~~~~~~~~~--~~~~~~~v~~~-~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                          .++.|++||..+++...  ...|...|.++ +|+|+|.+|++|+ |+.|+||+.-
T Consensus       372 ~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          372 CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             SSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred             EEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence                34679999999987663  24577778887 6999999999876 7899999863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4e-40  Score=287.01  Aligned_cols=282  Identities=15%  Similarity=0.234  Sum_probs=224.7

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR   83 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   83 (458)
                      +.+|+++ +||+|. |++|+|||+++|+++..                   ..+.+|...|++++|+|++++||+|+.|+
T Consensus        31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~-------------------~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg   89 (318)
T 4ggc_A           31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQL-------------------LQMEQPGEYISSVAWIKEGNYLAVGTSSA   89 (318)
T ss_dssp             EEECTTS-EEEEEE-TTEEEEEETTTCCEEEE-------------------EECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEECCCC-EEEEEe-CCEEEEEECCCCCEEEE-------------------EEecCCCCeEEEEEECCCCCEEEEEECCC
Confidence            3467775 777776 99999999999987633                   23467889999999999999999999999


Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP  163 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  163 (458)
                      +|++||+++++.+..+ .+|...+.++.+    ++..+++++.++.+++|+........ ..+.+|...+..+.+.+++ 
T Consensus        90 ~v~iw~~~~~~~~~~~-~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  162 (318)
T 4ggc_A           90 EVQLWDVQQQKRLRNM-TSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAPDG-  162 (318)
T ss_dssp             EEEEEETTTTEEEEEE-ECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-
T ss_pred             cEEEeecCCceeEEEe-cCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeE-EEEcCccCceEEEEEcCCC-
Confidence            9999999999988877 789888877655    56799999999999999987765443 3377899999999999999 


Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE--EEecCCCeEEEEecCCCccCCC
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF--AVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l--~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                      .++++++.|+.|++||+++++.........      ..+...+.+++++|++...+  ++++.++.|++||.+.....  
T Consensus       163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~--  234 (318)
T 4ggc_A          163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTF------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--  234 (318)
T ss_dssp             SEEEEEETTSCEEEEESSCBTTBSCCSEEE------CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--
T ss_pred             CEEEEEecCcceeEEECCCCcccccceeee------cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--
Confidence            689999999999999999876543322111      01344688899998765554  45667888999987654210  


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (318)
T 4ggc_A          235 --------------------------------------------------------------------------------  234 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe--cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCe
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG--SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV  399 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  399 (458)
                                  ... .+..  .+..+.| +|+++.++++  +.|+.|++||+.+++++.++.+|.+.|++++|+|++++
T Consensus       235 ------------~~~-~~~~--~v~~~~~-~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~  298 (318)
T 4ggc_A          235 ------------SAV-DAHS--QVCSILW-SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT  298 (318)
T ss_dssp             ------------EEE-ECSS--CEEEEEE-ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             ------------ccc-ccee--eeeeeee-cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence                        000 0111  2566777 8888877654  47999999999999999999999999999999999999


Q ss_pred             EEEeecCCcEEEecCCcc
Q 012712          400 LASSGIESDIKILTPNAA  417 (458)
Q Consensus       400 l~s~~~d~~i~iw~~~~~  417 (458)
                      ||||+.||+|+|||+.+.
T Consensus       299 l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          299 VASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEETTTEEEEECCSCC
T ss_pred             EEEEecCCeEEEEECCCC
Confidence            999999999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.1e-40  Score=284.83  Aligned_cols=264  Identities=15%  Similarity=0.188  Sum_probs=207.4

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEE
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQH  177 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~i  177 (458)
                      +.+|...|++++|+|  ++++|++++.|+.|++|++..........+.+|..+|.+++|+|+  + .+|++++.|++|++
T Consensus         5 ~~~h~~~V~~~~~s~--~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDY--YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMI   81 (297)
T ss_dssp             CCSCSSCEEEEEECT--TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEE
T ss_pred             ccCCcCceEEEEECC--CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEE
Confidence            478999999999999  999999999999999999975433233448899999999999864  5 78999999999999


Q ss_pred             EeCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712          178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL  256 (458)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  256 (458)
                      ||+++++........      +  +...|.+++|+|+. +.+|++++.|+.|++||+++....             ....
T Consensus        82 Wd~~~~~~~~~~~~~------~--h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-------------~~~~  140 (297)
T 2pm7_B           82 WKEENGRWSQIAVHA------V--HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-------------SPII  140 (297)
T ss_dssp             EEBSSSCBCCCEEEC------C--CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-------------CCEE
T ss_pred             EEcCCCceEEEEEee------c--CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-------------eeee
Confidence            999887532222111      1  44579999999962 579999999999999999865311             0123


Q ss_pred             ccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       257 ~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                      ...|...|.+++|+|++..-.                                                    .      
T Consensus       141 ~~~h~~~v~~~~~~p~~~~~~----------------------------------------------------~------  162 (297)
T 2pm7_B          141 IDAHAIGVNSASWAPATIEED----------------------------------------------------G------  162 (297)
T ss_dssp             EECCSSCEEEEEECCCC---------------------------------------------------------------
T ss_pred             eecccCccceEeecCCccccc----------------------------------------------------c------
Confidence            455778899999998752100                                                    0      


Q ss_pred             cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe----EEEEeecCCceeeEEEecCCC---CeEEEeecCCcE
Q 012712          337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE----LIRVIEADRHVVNCIEPHPHS---TVLASSGIESDI  409 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~d~~i  409 (458)
                       .+         .. .+++++|++|+.|++|++||+.+++    ....+.+|...|.+++|+|++   ++||+++.|++|
T Consensus       163 -~~---------~~-~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v  231 (297)
T 2pm7_B          163 -EH---------NG-TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC  231 (297)
T ss_dssp             ------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             -cC---------CC-CCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence             00         01 3467899999999999999998765    667889999999999999995   899999999999


Q ss_pred             EEecCCccc------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          410 KILTPNAAD------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       410 ~iw~~~~~~------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +||++....      ......|...|.+++|+|+|++||+++.|+.|+||+..
T Consensus       232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999987642      11224677789999999999999999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-41  Score=300.63  Aligned_cols=290  Identities=10%  Similarity=0.065  Sum_probs=218.4

Q ss_pred             CCceEEEEEecCCCEEEEecCC-------CeEEEEECCCccee--------e-eeccCCCcceeEEEEccCCCCeEEEEE
Q 012712           61 RGCVNTVSFNTDGDILISGSDD-------RRVILWDWKTERVK--------L-SFHSGHNDNVFQAKIMPFTDDRSIVTC  124 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~--------~-~~~~~~~~~i~~~~~~~~~~~~~l~s~  124 (458)
                      .-||.+++|+||+++|++|+.+       +.|++|++..+...        . ..+.+|...+.++++.    ++.++++
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~~g   89 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIILVG   89 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEEEE
Confidence            4589999999999999998754       36999998765321        1 1135788888888774    4455554


Q ss_pred             -----------cCCCcEEEeecccccceeee-------eccccccceEEEEEcCCCCeEE-EEecCCCeEEEEeCCCCCc
Q 012712          125 -----------AADGQVRHAQILERGGVETK-------LLGKHQGRAHKLAIEPGSPHVF-YTCGEDGLVQHFDLRTGAA  185 (458)
Q Consensus       125 -----------~~dg~i~vw~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~  185 (458)
                                 +.|+.+++|++.........       ....+...+.+++|+|||..++ ++++.|++|++||+++++.
T Consensus        90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~  169 (365)
T 4h5i_A           90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE  169 (365)
T ss_dssp             CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred             ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence                       45788999998765432211       1223445688999999995432 3556799999999999887


Q ss_pred             cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccccee
Q 012712          186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT  265 (458)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  265 (458)
                      ...+.           +...|.+++|+|+ ++++++++.+ .+++|+..+++...             ......|...|.
T Consensus       170 ~~~~~-----------~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~v~  223 (365)
T 4h5i_A          170 KFEIE-----------TRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIA-------------RKTDFDKNWSLS  223 (365)
T ss_dssp             EEEEE-----------CSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEE-------------EECCCCTTEEEE
T ss_pred             EEEeC-----------CCCceEEEEEccC-CceEEeccce-eEEEEEeccCccee-------------eeecCCCCCCEE
Confidence            76654           4457999999998 7899988865 46667666554211             123345677899


Q ss_pred             EEEeCCCCcEEEEec-CC----cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712          266 GLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR  340 (458)
Q Consensus       266 ~~~~~~~~~~l~~~~-~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (458)
                      +++|+|+++++++++ ++    .+++|++.....                                  .......+.+|.
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~----------------------------------~~~~~~~~~~~~  269 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNT----------------------------------SVLRSKQVTNRF  269 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE----------------------------------EEEEEEEEESSC
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeeccccccee----------------------------------cceeeeeecCCC
Confidence            999999999999887 33    377788765210                                  011234566676


Q ss_pred             ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      ..  |.+++| +|||++||+|+.|++|+|||+.+++++.++ .+|...|++++|+|||++||+|+.|++|+||++...
T Consensus       270 ~~--V~~~~~-Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          270 KG--ITSMDV-DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CC--eEeEEE-CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            64  899999 999999999999999999999999999875 789999999999999999999999999999998643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-40  Score=299.58  Aligned_cols=295  Identities=13%  Similarity=0.107  Sum_probs=239.2

Q ss_pred             eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc------ceeeeeccccccceEEEEEcCC----C--CeE
Q 012712           98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG------GVETKLLGKHQGRAHKLAIEPG----S--PHV  165 (458)
Q Consensus        98 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~v~~~~~~~~----~--~~~  165 (458)
                      ..+.+|.+.|++++|+|    ++|++++.||.|++|++.+++      ....  +..|...|.+++|+|+    +  ..+
T Consensus        10 ~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceE--EecCCCcEEEEEEecccccCCccccE
Confidence            34478999999999986    699999999999999998877      3333  6789999999999998    4  047


Q ss_pred             EEEecCCCeEEEEeCCCCCc-----cceeeecccCCCCcceeecceEEEEEC----CCCCcE-EEEecCCCeEEEEecCC
Q 012712          166 FYTCGEDGLVQHFDLRTGAA-----TELFTCRPIDDRRNYMTVVNLNAIAID----PRNANL-FAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~-l~~~~~dg~i~i~d~~~  235 (458)
                      |++++.|+.|++||+.+++.     ...+..+.     .+.....|.+++|+    |+ +.+ |++++.||.|++||+++
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGASNDRL-LSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSC-----TTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccc-----cccCCCcEEEEEEeeccCCC-CceEEEEEeCCCcEEEEeCCc
Confidence            89999999999999998876     43333211     00003579999999    97 678 99999999999999988


Q ss_pred             ------CccCCCccCCCCCCCcCCCccc-------cccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCC
Q 012712          236 ------YKWDGSTDFGQPADYFCPPNLI-------GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSS  301 (458)
Q Consensus       236 ------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~  301 (458)
                            .+....          .+....       ..|...|.+++|+|++ ++++++ ++.|++||+.+          
T Consensus       158 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~----------  216 (397)
T 1sq9_A          158 FADESNSLTLNW----------SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST----------  216 (397)
T ss_dssp             SSSHHHHTTTCC----------CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT----------
T ss_pred             cccccccceeec----------cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC----------
Confidence                  442210          111112       3467889999999999 888888 45899999986          


Q ss_pred             CccccccccccCCCCccccCCCCCCcccccCceeecC---c---cceeeeeEEEEecCCCcEEEEecCC---CeEEEEEe
Q 012712          302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG---H---RNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKK  372 (458)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~  372 (458)
                                                  ......+..   |   ..  .+.+++| +|++++|++++.|   |.|++||+
T Consensus       217 ----------------------------~~~~~~~~~~~~h~~~~~--~i~~i~~-~~~~~~l~~~~~d~~~g~i~i~d~  265 (397)
T 1sq9_A          217 ----------------------------LRPLYNFESQHSMINNSN--SIRSVKF-SPQGSLLAIAHDSNSFGCITLYET  265 (397)
T ss_dssp             ----------------------------TEEEEEEECCC---CCCC--CEEEEEE-CSSTTEEEEEEEETTEEEEEEEET
T ss_pred             ----------------------------CceeEEEeccccccccCC--ccceEEE-CCCCCEEEEEecCCCCceEEEEEC
Confidence                                        334555665   6   55  3899998 9999999999999   99999999


Q ss_pred             cCCeEEEEeec-------------CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccc------cc-------
Q 012712          373 KGGELIRVIEA-------------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLP------TN-------  425 (458)
Q Consensus       373 ~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~------~~-------  425 (458)
                      .+++.+..+.+             |...|.+++|+|++++|++++.||.|++||+.+++.. .+.      .|       
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (397)
T 1sq9_A          266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV  345 (397)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCB
T ss_pred             CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcc
Confidence            99999999998             9999999999999999999999999999999988665 444      56       


Q ss_pred             --------cccEEEEEEecCC----------cEEEeeecCCceEEEEEe
Q 012712          426 --------IEQVCFSIYSADY----------WWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       426 --------~~~v~~~~~s~d~----------~~l~s~~~d~~i~~w~~~  456 (458)
                              ...|.+++|+|+|          .+|++++.||.|++|+.-
T Consensus       346 ~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          346 DEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             CTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             ccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence                    7889999999999          799999999999999973

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.1e-41  Score=298.48  Aligned_cols=317  Identities=15%  Similarity=0.145  Sum_probs=236.8

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      ..+.|+|++++|++|+.|+.|++||+++++.                   +....+.+|.+.|.+++|+|++++|++++.
T Consensus        12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   72 (372)
T 1k8k_C           12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGT   72 (372)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------EEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcC
Confidence            4567899999999999999999999997651                   233568899999999999999999999999


Q ss_pred             CCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce--eeeeccccccceEEEEE
Q 012712           82 DRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~  158 (458)
                      |+.|++||+.+++..... ...|...|.+++|+|  ++++|++++.||.|++||+......  .......|...|.+++|
T Consensus        73 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           73 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             CCeEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence            999999999888744332 257899999999999  9999999999999999999887642  22334678999999999


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCC------------------CCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRT------------------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                      +|++ .+|++++.||.|++||++.                  ++....+.        .  +...+.+++|+|+ +.+|+
T Consensus       151 ~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~v~~~~~~~~-~~~l~  218 (372)
T 1k8k_C          151 HPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------S--SCGWVHGVCFSAN-GSRVA  218 (372)
T ss_dssp             CTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------C--CSSCEEEEEECSS-SSEEE
T ss_pred             cCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC--------C--CCCeEEEEEECCC-CCEEE
Confidence            9998 6899999999999999753                  33332222        1  4557999999998 68999


Q ss_pred             EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC--CC--CCC
Q 012712          221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM--GL--GPN  296 (458)
Q Consensus       221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~--~~--~~~  296 (458)
                      +++.|+.|++||+++.+..               .....|...+.+++|+|++++++++.++.+++|++..  +.  ...
T Consensus       219 ~~~~d~~i~i~d~~~~~~~---------------~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~  283 (372)
T 1k8k_C          219 WVSHDSTVCLADADKKMAV---------------ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG  283 (372)
T ss_dssp             EEETTTEEEEEEGGGTTEE---------------EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred             EEeCCCEEEEEECCCCcee---------------EEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEee
Confidence            9999999999999887532               2334567789999999999999999888999999987  31  111


Q ss_pred             CCCCCCccccccccccCCCCccccCCCCCCcccccC-------ceeecCccceeeeeEEEEecCCC---cEEEEecCCCe
Q 012712          297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA-------PQVYKGHRNCVTVKGVNFFGPKC---EYVVSGSDCGR  366 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~s~~~---~~l~~~~~dg~  366 (458)
                      .+...........       ..+......+ .....       .....+|...  |.+++|++++|   ++|++|+.||.
T Consensus       284 ~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~g~~~~~l~s~~~Dg~  353 (372)
T 1k8k_C          284 RLDVPKQSSQRGL-------TARERFQNLD-KKASSEGSAAAGAGLDSLHKNS--VSQISVLSGGKAKCSQFCTTGMDGG  353 (372)
T ss_dssp             CCCCC---------------CHHHHHHHCC-CCC---------CCCSSSSSSC--EEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             ccCccccchhhhc-------chhhhhhhcc-cccccccCccccccccccccCC--cceeEEecCCCcceeeEEEecCCCc
Confidence            1110000000000       0000000000 00011       1222477774  89999757888   99999999999


Q ss_pred             EEEEEecCCe
Q 012712          367 IFIWKKKGGE  376 (458)
Q Consensus       367 i~iwd~~~~~  376 (458)
                      |++|++.+++
T Consensus       354 i~~W~~~~~~  363 (372)
T 1k8k_C          354 MSIWDVRSLE  363 (372)
T ss_dssp             EEEEEHHHHH
T ss_pred             eEEEEecChh
Confidence            9999997654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.5e-40  Score=302.50  Aligned_cols=329  Identities=15%  Similarity=0.236  Sum_probs=235.6

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc-----------eeeeeccCCC------------cceeEEEEccC
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-----------VKLSFHSGHN------------DNVFQAKIMPF  115 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~~------------~~i~~~~~~~~  115 (458)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+ .+|.            ..|.+++|+| 
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~-  103 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP-  103 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC-
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC-
Confidence            368999999999999999999999999999998776           34444 6898            8899999999 


Q ss_pred             CCC--eEEEEEcCCCcEEEeeccccccee--------------------------------------eeeccccccceEE
Q 012712          116 TDD--RSIVTCAADGQVRHAQILERGGVE--------------------------------------TKLLGKHQGRAHK  155 (458)
Q Consensus       116 ~~~--~~l~s~~~dg~i~vw~~~~~~~~~--------------------------------------~~~~~~~~~~v~~  155 (458)
                       ++  ..|++++.|+.|++|++.++....                                      .....+|...|.+
T Consensus       104 -~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          104 -QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             -CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             -CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence             77  799999999999999997644310                                      0114679999999


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR  234 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  234 (458)
                      ++|+|++ .+|+++ .|+.|++||+++ ++....+...+ ....+  +...|.+++|+|+++.+|++|+.||.|++||++
T Consensus       183 ~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          183 ISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKP-ANMEE--LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             EEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCC-SSGGG--CCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeeccc-ccccc--cCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            9999998 678888 799999999984 33333221111 11112  455799999999844899999999999999999


Q ss_pred             CCccCCCccCCCCCCCcCCCccccccc------------cceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712          235 KYKWDGSTDFGQPADYFCPPNLIGDEQ------------VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      +.+....           .......+.            ..|.+++|+|+|++|++++++.|++||+...          
T Consensus       258 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~----------  316 (447)
T 3dw8_B          258 ASALCDR-----------HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNME----------  316 (447)
T ss_dssp             TCSSSCT-----------TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCC----------
T ss_pred             CCccccc-----------eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCC----------
Confidence            8763110           011222233            4899999999999999998888999999762          


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCcccee-------------eeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV-------------TVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                                                 ......+.+|....             .+..++| +|++++|++|+.||.|++
T Consensus       317 ---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-s~~~~~l~s~s~dg~v~i  368 (447)
T 3dw8_B          317 ---------------------------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW-NGSDSVVMTGSYNNFFRM  368 (447)
T ss_dssp             ---------------------------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE-CTTSSEEEEECSTTEEEE
T ss_pred             ---------------------------ccccceeeccccccccccccccccccccceEEEE-CCCCCEEEEeccCCEEEE
Confidence                                       12233344443210             1334888 999999999999999999


Q ss_pred             EEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCc
Q 012712          370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCS  449 (458)
Q Consensus       370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~  449 (458)
                      ||+.+++.+ .+..|..+.......+.. .+..++...       ..........+...|..++|+|++.+||+++.++ 
T Consensus       369 wd~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-  438 (447)
T 3dw8_B          369 FDRNTKRDI-TLEASRENNKPRTVLKPR-KVCASGKRK-------KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-  438 (447)
T ss_dssp             EETTTCCEE-EEECCSTTCCTTCBCCCC-CEECSSCCC-------TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-
T ss_pred             EEcCCCcce-eeeecccccccccccCCc-cccccCCcc-------cccccccccccCCceeEEEECCCCCEEEEEecce-
Confidence            999988776 566665544333333322 233332210       0111112234556789999999999999988876 


Q ss_pred             eEEEE
Q 012712          450 ILLFE  454 (458)
Q Consensus       450 i~~w~  454 (458)
                      +++|.
T Consensus       439 ~~~~~  443 (447)
T 3dw8_B          439 LYIFQ  443 (447)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            66664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.7e-41  Score=296.53  Aligned_cols=298  Identities=13%  Similarity=0.109  Sum_probs=232.1

Q ss_pred             CcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcC---CCcEEEeecccccceeeeeccccccceEEEEEcCCC--CeE
Q 012712           92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS--PHV  165 (458)
Q Consensus        92 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~  165 (458)
                      ..+.+..+..+|...|.+++|+|  ++..+ ++++.   ||.|++|++.+++..... ..+|...|.+++|+|++  ..+
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~   82 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVP--CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-EIEKAKPIKCGTFGATSLQQRY   82 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECT--TSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-EEEESSCEEEEECTTCCTTTCC
T ss_pred             hhHHhhhhccCCCCceEEEEEcC--CCceEEEecCccCCCcEEEEEeCCCCccccee-eecccCcEEEEEEcCCCCCCce
Confidence            33444555578999999999999  88555 56665   899999999887765433 33689999999999983  368


Q ss_pred             EEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEE------ECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712          166 FYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIA------IDPRNANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~------~~p~~~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      |++++.||.|++||+++++ ....+..          +...|.++.      |+|+ +.+|++++.||.|++||+++.+.
T Consensus        83 l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~  151 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPEMPVYSVKG----------HKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVWDPRQKDD  151 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEECC----------CSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEECTTSCSS
T ss_pred             EEEecCCCeEEEEeCCCCCccEEEEEe----------cccceEEEeeccccccCCC-ccEEEEEeCCCeEEEEeCCCCCC
Confidence            9999999999999999887 5554432          445788885      5676 68999999999999999988651


Q ss_pred             -CCCccCCCCCCCcCCCccccccccceeEEE----eCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712          239 -DGSTDFGQPADYFCPPNLIGDEQVGITGLA----FSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEM  312 (458)
Q Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
                       ....           ..........+.+++    |+|+++++++++. +.|++||+.++                    
T Consensus       152 ~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------------  200 (357)
T 3i2n_A          152 PVANM-----------EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM--------------------  200 (357)
T ss_dssp             CSEEE-----------CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--------------------
T ss_pred             cceec-----------cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--------------------
Confidence             1110           001111234788888    7899999999885 58999999863                    


Q ss_pred             CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC---CCcEEEEecCCCeEEEEEecCCeEEEEee-----cC
Q 012712          313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP---KCEYVVSGSDCGRIFIWKKKGGELIRVIE-----AD  384 (458)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~  384 (458)
                                        .. .....|..  .+.+++| +|   ++++|++++.||.|++||+.+++.+..+.     +|
T Consensus       201 ------------------~~-~~~~~~~~--~v~~~~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  258 (357)
T 3i2n_A          201 ------------------AL-RWETNIKN--GVCSLEF-DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH  258 (357)
T ss_dssp             ------------------EE-EEEEECSS--CEEEEEE-SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             ------------------ce-eeecCCCC--ceEEEEc-CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence                              11 22234444  3899998 99   99999999999999999998876655444     89


Q ss_pred             CceeeEEEecCCCC-eEEEeecCCcEEEecCCccc--------------------ccccccccccEEEEEEecCCcEEE-
Q 012712          385 RHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD--------------------RATLPTNIEQVCFSIYSADYWWSK-  442 (458)
Q Consensus       385 ~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~--------------------~~~~~~~~~~v~~~~~s~d~~~l~-  442 (458)
                      ...|.+++|+|+++ +|++++.||.|++|++..+.                    ...+..|...|.+++|+|+|++|+ 
T Consensus       259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred             cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEE
Confidence            99999999999999 89999999999999997542                    234567888899999999999888 


Q ss_pred             eeecCCceEEEEEe
Q 012712          443 SQNFSCSILLFEWL  456 (458)
Q Consensus       443 s~~~d~~i~~w~~~  456 (458)
                      +++.|+.|++|+.-
T Consensus       339 s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          339 CSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEETTSEEEEEEEC
T ss_pred             EecCCCcEEEEECC
Confidence            89999999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-40  Score=295.84  Aligned_cols=286  Identities=16%  Similarity=0.232  Sum_probs=231.7

Q ss_pred             ecCCCce--EEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           58 DKHRGCV--NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        58 ~~h~~~v--~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      .+|...+  .+++|+  +..+++++.|+.|++||+.+++....+...|...|.+++|+|  ++++|++++.||.|++||+
T Consensus        88 ~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           88 PGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             TTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred             CCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECCCCeEEEEEC
Confidence            3676654  445555  456888889999999999999987777556899999999999  9999999999999999999


Q ss_pred             ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCC
Q 012712          136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      .+++....  +..|...|.+++|++   .++++++.||.|++||++.. .....+..          +...|.+++|+|+
T Consensus       164 ~~~~~~~~--~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~  228 (401)
T 4aez_A          164 ESQTKLRT--MAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQG----------HSSEVCGLAWRSD  228 (401)
T ss_dssp             TTCCEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEEC----------CSSCEEEEEECTT
T ss_pred             cCCeEEEE--ecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcC----------CCCCeeEEEEcCC
Confidence            88877655  778999999999954   57999999999999999854 33333332          4557999999997


Q ss_pred             CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEec---CCcEEEEEcc
Q 012712          215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN---DEFIYLFTQD  290 (458)
Q Consensus       215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~---~~~i~i~~~~  290 (458)
                       +.+|++++.|+.|++||+++.+.               ......|...|.+++|+|++ .++++++   ++.|++||+.
T Consensus       229 -~~~l~s~~~d~~v~iwd~~~~~~---------------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          229 -GLQLASGGNDNVVQIWDARSSIP---------------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             -SSEEEEEETTSCEEEEETTCSSE---------------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred             -CCEEEEEeCCCeEEEccCCCCCc---------------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence             78999999999999999987642               22344577899999999976 4666654   6689999998


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE--ecCCCeEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRIF  368 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~--~~~dg~i~  368 (458)
                      ++                                      .....+..+ .  .+.+++| +|+++++++  |+.||.|+
T Consensus       293 ~~--------------------------------------~~~~~~~~~-~--~v~~~~~-s~~~~~l~~~~g~~dg~i~  330 (401)
T 4aez_A          293 TG--------------------------------------ARVNTVDAG-S--QVTSLIW-SPHSKEIMSTHGFPDNNLS  330 (401)
T ss_dssp             TC--------------------------------------CEEEEEECS-S--CEEEEEE-CSSSSEEEEEECTTTCEEE
T ss_pred             CC--------------------------------------CEEEEEeCC-C--cEEEEEE-CCCCCeEEEEeecCCCcEE
Confidence            73                                      333444332 2  3899998 999999998  55899999


Q ss_pred             EEEecCCeEEE--EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          369 IWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       369 iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +||+.+++...  .+.+|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus       331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             EEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            99999976554  46789999999999999999999999999999999988665

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.6e-40  Score=289.70  Aligned_cols=289  Identities=10%  Similarity=0.100  Sum_probs=236.3

Q ss_pred             EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEE
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVR  131 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~  131 (458)
                      ...+|.+.|++++|+|++++|++++.|+.|++|++.+++   ....+ ..|...|.+++|+|  +++ +|++++.||.|+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFID--NTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEE--SSSEEEEEEETTSCEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECC--CCCcEEEEEcCCCeEE
Confidence            346899999999999999999999999999999998877   23333 48999999999999  999 999999999999


Q ss_pred             Eeec-ccccceeeeeccc--cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC---------CCccceeeecccCCCCc
Q 012712          132 HAQI-LERGGVETKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---------GAATELFTCRPIDDRRN  199 (458)
Q Consensus       132 vw~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~  199 (458)
                      +|++ .+++.   ..+..  |...|.+++|+| + .++++++.|+.|++||+++         ++....+.         
T Consensus        83 ~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---------  148 (342)
T 1yfq_A           83 KVDLIGSPSF---QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---------  148 (342)
T ss_dssp             EECSSSSSSE---EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---------
T ss_pred             EEEeccCCce---EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---------
Confidence            9999 77654   33677  999999999999 6 6899999999999999987         55444433         


Q ss_pred             ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEE
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLV  277 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  277 (458)
                        +...+.+++|+|+ +  +++++.++.|++||+++ ....             .......+...+.+++|+| ++++++
T Consensus       149 --~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~-------------~~~~~~~~~~~i~~i~~~~~~~~~l~  210 (342)
T 1yfq_A          149 --VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDN-------------GTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             --SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCC-------------CEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             --eCCceEEEEecCC-c--EEEEeCCCeEEEEECCcccccc-------------ceeeecCCCCceeEEEECCCCCCEEE
Confidence              3457999999986 3  89999999999999987 4321             1223344677899999999 999999


Q ss_pred             Eec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc-------eeeeeEEE
Q 012712          278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVN  349 (458)
Q Consensus       278 ~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~  349 (458)
                      +++ ++.+++|+++.......                                ......+..|..       ...|.+++
T Consensus       211 ~~~~dg~i~i~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~  258 (342)
T 1yfq_A          211 CSSIDGRVAVEFFDDQGDDYN--------------------------------SSKRFAFRCHRLNLKDTNLAYPVNSIE  258 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTT--------------------------------CTTCEEEECCCCCTTCCSSCCCEEEEE
T ss_pred             EEecCCcEEEEEEcCCCcccc--------------------------------cccceeeecccccccccccceeEEEEE
Confidence            888 55899999876410000                                123444555533       12489999


Q ss_pred             EecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEeecCCc-EEEecC
Q 012712          350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESD-IKILTP  414 (458)
Q Consensus       350 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~-i~iw~~  414 (458)
                      | +|++++|++++.||.|++||+.+++++..+.+| ...|.+++  |++++|++++.||. .+.|..
T Consensus       259 ~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          259 F-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             E-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             E-cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            8 999999999999999999999999999999998 99999999  99999999999998 666653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=292.97  Aligned_cols=347  Identities=15%  Similarity=0.113  Sum_probs=231.4

Q ss_pred             CCCCCC-CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEec
Q 012712            3 DASNNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS   80 (458)
Q Consensus         3 ~~~~~~-~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~   80 (458)
                      .+.|+| ++++|++|+.||.|++||+.+++..........        .........+|.+.|.+++|+| ++++|++++
T Consensus        48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV--------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE--------EEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc--------ccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            356788 999999999999999999998876643100000        0000011246999999999999 778999999


Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCC-CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      .|+.|++||+.+++....+  .+...+.++.|+|.. ++.++++++.+|.|++||+.+++....  +..|...|.+++|+
T Consensus       120 ~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~v~~~~~~  195 (408)
T 4a11_B          120 FDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEILAVSWS  195 (408)
T ss_dssp             TTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE--ECCCCSCEEEEEEC
T ss_pred             CCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee--ecCCCCcEEEEEEC
Confidence            9999999999999887776  478889999999832 334899999999999999998876655  77899999999999


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCc-cceeeeccc-----CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPI-----DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      |+++.++++++.||.|++||++++.. ...+.....     .......+...|.+++|+|+ +.+|++++.||.|++||+
T Consensus       196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEEC
Confidence            99966899999999999999987752 222211000     00000125567999999997 789999999999999999


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccC
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG  313 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (458)
                      ++.+.......         .................+.+.+++++.++.+++||+.+                      
T Consensus       275 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------------------  323 (408)
T 4a11_B          275 SNGENTLVNYG---------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS----------------------  323 (408)
T ss_dssp             TTCCBCCCCCC---------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT----------------------
T ss_pred             CCCccceeccc---------cccccccccceeEEecCCCceEEEEecCCEEEEEECcC----------------------
Confidence            98764322110         00011111222233344455667777788999999987                      


Q ss_pred             CCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712          314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP  393 (458)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  393 (458)
                                      ......+.+|...  |.+++| +|++++|++++.||.|++||+.+++++.....+...   ..+
T Consensus       324 ----------------~~~~~~~~~~~~~--v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~  381 (408)
T 4a11_B          324 ----------------GEQITMLKGHYKT--VDCCVF-QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQL  381 (408)
T ss_dssp             ----------------CCEEEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEEECC-------------------
T ss_pred             ----------------CcceeeeccCCCe--EEEEEE-cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccc
Confidence                            4556777888875  899998 999999999999999999999998887665543321   233


Q ss_pred             cC-CCCeEEEeecCCcEEEecCC
Q 012712          394 HP-HSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       394 s~-~~~~l~s~~~d~~i~iw~~~  415 (458)
                      .+ +...+.+.+.++.+++|+..
T Consensus       382 ~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          382 NPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             -----------------------
T ss_pred             ccccceeecccCccCceeecCCc
Confidence            33 33455667789999999865

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.7e-40  Score=293.44  Aligned_cols=297  Identities=13%  Similarity=0.134  Sum_probs=235.8

Q ss_pred             EeeeeeEeecCCCceEEEEEecC---CCEEEEecCCCeEEEEECCC-cceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTD---GDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      .++.+..+.+|.+.|++++|+|+   |++|++|+.|+.|++||+.+ +..+.....+|...|.+++|+|  ++++|++++
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~  105 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD--DGSKVFTAS  105 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT--TSSEEEEEE
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc--CCCEEEEEc
Confidence            34455678899999999999999   69999999999999999987 5555344578999999999999  999999999


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEE--cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      .||.|++||+.+++...   +..|...|.+++|  +|++ .+|++++.||.|++||+++++....+..           .
T Consensus       106 ~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~  170 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQ---IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQL-----------P  170 (368)
T ss_dssp             TTSEEEEEETTTTEEEE---EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEEC-----------S
T ss_pred             CCCcEEEEEcCCCCcee---eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEec-----------C
Confidence            99999999998876544   4569999999999  8888 7899999999999999999988777763           2


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE----EEEe
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL----LVSY  279 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~  279 (458)
                      ..+.++.+.+   ..+++++.++.+++|+++......             ..........+.++++.++...    ++++
T Consensus       171 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (368)
T 3mmy_A          171 ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF-------------RRIESPLKHQHRCVAIFKDKQNKPTGFALG  234 (368)
T ss_dssp             SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE-------------EECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             CCceEEEecC---CeeEEEeCCCcEEEEEeccccchh-------------hhccccccCCCceEEEcccCCCCCCeEEEe
Confidence            2466777765   377888889999999998754211             1111122334555555554432    6666


Q ss_pred             c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce----------eeeeEE
Q 012712          280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC----------VTVKGV  348 (458)
Q Consensus       280 ~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~  348 (458)
                      + ++.+++|++.....                                   ......+.+|...          ..|.++
T Consensus       235 ~~dg~i~i~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (368)
T 3mmy_A          235 SIEGRVAIHYINPPNP-----------------------------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGI  279 (368)
T ss_dssp             ETTSEEEEEESSCSCH-----------------------------------HHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred             cCCCcEEEEecCCCCc-----------------------------------cccceeeeeeecccccccccccccceEEE
Confidence            6 66899999986311                                   1233444444431          138999


Q ss_pred             EEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       349 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      +| +|++++|++++.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.|+..+.|++.
T Consensus       280 ~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          280 AF-HPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EE-ecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            98 9999999999999999999999999999999999999999999999999999999876666644

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-40  Score=288.95  Aligned_cols=273  Identities=17%  Similarity=0.207  Sum_probs=201.8

Q ss_pred             EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce--eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++..  +..+ .+|...|.+++|+|..++++|++++.|++|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            4679999999999999999999999999999999987653  3344 799999999999862238899999999999999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      |++++.......+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+........     ..+  +...+.+++|+
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~-----~~~--h~~~v~~~~~~  159 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI-----NNA--HTIGCNAVSWA  159 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-----TTS--SSSCBCCCEEC
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-----ecc--ccCCcceEEEc
Confidence            99877544444578899999999999982 26899999999999999987642211111     112  44568899999


Q ss_pred             CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712          213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM  291 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~  291 (458)
                      |+..        .+.+  .+...+                               ...+++++|++++ ++.|++||+..
T Consensus       160 ~~~~--------~~~~--~~~~~~-------------------------------~~~~~~~~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          160 PAVV--------PGSL--IDHPSG-------------------------------QKPNYIKRFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             CCCC--------C--------CCS-------------------------------CCCCCCCBEECCBTTSBCCEEEECT
T ss_pred             cccC--------Cccc--cccccc-------------------------------cCccccceEEEecCCCeEEEEEeCC
Confidence            9721        0000  000000                               0112356788777 45799998754


Q ss_pred             CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC----cEEEEecCCCeE
Q 012712          292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRI  367 (458)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~----~~l~~~~~dg~i  367 (458)
                      ...                                   ......+.+|...  |.+++| +|++    ++|++++.||+|
T Consensus       199 ~~~-----------------------------------~~~~~~l~~h~~~--V~~v~~-sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          199 DGQ-----------------------------------WKEEQKLEAHSDW--VRDVAW-APSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             TSC-----------------------------------EEEEECCBCCSSC--EEEEEC-CCCSSCSCCEEEEEETTCEE
T ss_pred             CCc-----------------------------------cceeeecccCCCc--eEEEEe-cCCCCCCCceEEEEcCCCeE
Confidence            210                                   1234566778774  899998 9986    899999999999


Q ss_pred             EEEEecCC---e-EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          368 FIWKKKGG---E-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       368 ~iwd~~~~---~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      ++|++.+.   + ....+..|...|.+++|+|++++||+++.|+.|++|+..
T Consensus       241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99999762   1 234456788999999999999999999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-39  Score=293.23  Aligned_cols=282  Identities=18%  Similarity=0.220  Sum_probs=226.8

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEEEEecCCCeEE
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVI   86 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~   86 (458)
                      +++..+++++.|+.|++||+++++....                     +. .|.+.|.+++|+|++++|++|+.||.|+
T Consensus       101 ~s~~~l~~~~~d~~v~lw~~~~~~~~~~---------------------~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  159 (401)
T 4aez_A          101 WSNLNVVAVALERNVYVWNADSGSVSAL---------------------AETDESTYVASVKWSHDGSFLSVGLGNGLVD  159 (401)
T ss_dssp             ECTTSEEEEEETTEEEEEETTTCCEEEE---------------------EECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ecCCCEEEEECCCeEEEeeCCCCcEeEe---------------------eecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence            3456688888999999999998876532                     33 3899999999999999999999999999


Q ss_pred             EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712           87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF  166 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  166 (458)
                      +||+.+++.+..+ .+|...|.+++|.    ++.|++++.||.|++||++...... ..+..|...|.+++|+|++ .+|
T Consensus       160 iwd~~~~~~~~~~-~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l  232 (401)
T 4aez_A          160 IYDVESQTKLRTM-AGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDG-LQL  232 (401)
T ss_dssp             EEETTTCCEEEEE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTS-SEE
T ss_pred             EEECcCCeEEEEe-cCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCccee-eEEcCCCCCeeEEEEcCCC-CEE
Confidence            9999999888777 6899999999995    4699999999999999998544332 3377899999999999998 789


Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCCCccCCCccC
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDF  244 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  244 (458)
                      ++++.|+.|++||+++++....+..          +...|.+++|+|++..++++++  .|+.|++||+++++....   
T Consensus       233 ~s~~~d~~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~---  299 (401)
T 4aez_A          233 ASGGNDNVVQIWDARSSIPKFTKTN----------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT---  299 (401)
T ss_dssp             EEEETTSCEEEEETTCSSEEEEECC----------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE---
T ss_pred             EEEeCCCeEEEccCCCCCccEEecC----------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE---
Confidence            9999999999999999877665542          4457999999998777888866  799999999988753221   


Q ss_pred             CCCCCCcCCCccccccccceeEEEeCCCCcEEEEec---CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                  . .+...+.+++|+|+++++++++   ++.|++|++.++.                            
T Consensus       300 ------------~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~----------------------------  338 (401)
T 4aez_A          300 ------------V-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG----------------------------  338 (401)
T ss_dssp             ------------E-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE----------------------------
T ss_pred             ------------E-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc----------------------------
Confidence                        1 2456899999999999998843   5689999987631                            


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE  382 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  382 (458)
                              ......+.+|...  |.+++| +|++++|++++.||.|++|++.+++.+....
T Consensus       339 --------~~~~~~~~~h~~~--v~~~~~-s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          339 --------LTKQVDIPAHDTR--VLYSAL-SPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             --------EEEEEEEECCSSC--CCEEEE-CTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             --------ceeEEEecCCCCC--EEEEEE-CCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence                    1223345677764  899998 9999999999999999999999988776543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-39  Score=282.56  Aligned_cols=288  Identities=14%  Similarity=0.155  Sum_probs=233.5

Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC  169 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  169 (458)
                      ..++......+.+|.+.|.+++| |  ++++|++++.||.|++||+.++.....  +..|...|.+++|+|++ .+++++
T Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~   77 (313)
T 3odt_A            4 PFTGYQLSATLKGHDQDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTV--VYTGQGFLNSVCYDSEK-ELLLFG   77 (313)
T ss_dssp             -CCCCEEEEEECCCSSCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEE--EEECSSCEEEEEEETTT-TEEEEE
T ss_pred             ccccHHHHHHhhCCCCCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEE--eecCCccEEEEEECCCC-CEEEEe
Confidence            33443333444899999999999 8  999999999999999999977665544  67789999999999999 689999


Q ss_pred             cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712          170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD  249 (458)
Q Consensus       170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  249 (458)
                      +.|+.|++|++.............     +  +...+.+++|+   +.++++++.||.|++||....             
T Consensus        78 ~~dg~i~~~~~~~~~~~~~~~~~~-----~--~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~~~-------------  134 (313)
T 3odt_A           78 GKDTMINGVPLFATSGEDPLYTLI-----G--HQGNVCSLSFQ---DGVVISGSWDKTAKVWKEGSL-------------  134 (313)
T ss_dssp             ETTSCEEEEETTCCTTSCC-CEEC-----C--CSSCEEEEEEE---TTEEEEEETTSEEEEEETTEE-------------
T ss_pred             cCCCeEEEEEeeecCCCCcccchh-----h--cccCEEEEEec---CCEEEEEeCCCCEEEEcCCcE-------------
Confidence            999999999987754322221111     1  45578999994   469999999999999992211             


Q ss_pred             CcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712          250 YFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT  327 (458)
Q Consensus       250 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (458)
                          ......|...+.+++|.| ++.++++++ ++.+++||..                                     
T Consensus       135 ----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------------------------------  173 (313)
T 3odt_A          135 ----VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-------------------------------------  173 (313)
T ss_dssp             ----EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------------------------------------
T ss_pred             ----EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-------------------------------------
Confidence                233445788999999988 888888888 5589999943                                     


Q ss_pred             ccccCceeecC-ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC
Q 012712          328 DVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE  406 (458)
Q Consensus       328 ~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  406 (458)
                         .....+.. |..  .+.+++| +|+++ +++++.||.|++||+.+++++..+.+|...|.+++|+|++ .|++++.|
T Consensus       174 ---~~~~~~~~~~~~--~i~~~~~-~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d  245 (313)
T 3odt_A          174 ---KVIKTFSGIHND--VVRHLAV-VDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED  245 (313)
T ss_dssp             ---EEEEEECSSCSS--CEEEEEE-EETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETT
T ss_pred             ---ceEEEEeccCcc--cEEEEEE-cCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecC
Confidence               23444554 554  3889998 99998 8899999999999999999999999999999999999999 68899999


Q ss_pred             CcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          407 SDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       407 ~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      |.|++||+.+++.. .+..|...|.+++|+|+++ +++++.||.|++|+.-
T Consensus       246 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             SEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             CEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence            99999999988765 5667777899999999999 5578999999999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-41  Score=300.96  Aligned_cols=322  Identities=10%  Similarity=0.067  Sum_probs=234.4

Q ss_pred             CCCCCC----CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEe--ecCCCceEEEEEecC----C
Q 012712            4 ASNNNN----NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL--DKHRGCVNTVSFNTD----G   73 (458)
Q Consensus         4 ~~~~~~----~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~----~   73 (458)
                      +.|+|+    ...+++++.++.|++||+.+++.+..                  +..+  ..|.+.|.+++|+|+    +
T Consensus        24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A           24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL------------------LQSYVDADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE------------------EEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred             EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe------------------eeeccccCCCCcEEEEEeccCCCCCC
Confidence            456663    45566666688999999998776532                  1112  237789999999999    6


Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee-eccccccc
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQGR  152 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~  152 (458)
                      ++|++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|. ++.+|++++.||.|++||+.+++..... .+..|...
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            79999999999999999999888777 689999999999983 5789999999999999999887765541 12679999


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      |.+++|+|++ .+|++++.||.|++||+++++....+..                .+.++|+ +..+..........   
T Consensus       164 v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------~~~~~~~-~~~~~~~~~~~~~~---  222 (366)
T 3k26_A          164 VLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKE----------------SYDYNPN-KTNRPFISQKIHFP---  222 (366)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHH----------------HHTCCGG-GCSSCCCCEEECCC---
T ss_pred             eeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccce----------------eEEecCC-CCcccccceeeccC---
Confidence            9999999998 6899999999999999998766544431                1223343 12221111100000   


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                                          .......|...|.+++|+  +++|++++ ++.|++||+.+.........           
T Consensus       223 --------------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------  269 (366)
T 3k26_A          223 --------------------DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIK-----------  269 (366)
T ss_dssp             --------------------SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCC-----------
T ss_pred             --------------------ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccc-----------
Confidence                                011122356677888887  55677666 45788888766432111000           


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC--CcEEEEecCCCeEEEEEecCCe----EEEEeecC-
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--CEYVVSGSDCGRIFIWKKKGGE----LIRVIEAD-  384 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~-  384 (458)
                                   ...........+..|...  +.+++| +|+  +++|++|+.||.|++||+.+++    ....+.+| 
T Consensus       270 -------------~~~~~~~~~~~~~~~~~~--v~~~~~-s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  333 (366)
T 3k26_A          270 -------------PSESNVTILGRFDYSQCD--IWYMRF-SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK  333 (366)
T ss_dssp             -------------TTCCCEEEEEEEECSSCC--SSCCCC-EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred             -------------cCCcchheeccccccCCc--EEEEEE-cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence                         000012234566667664  788888 899  9999999999999999998875    44577777 


Q ss_pred             -CceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          385 -RHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       385 -~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                       ...|++++|+|++++|++++.||.|++||+.
T Consensus       334 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          334 CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence             6899999999999999999999999999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-40  Score=302.26  Aligned_cols=330  Identities=11%  Similarity=0.154  Sum_probs=235.8

Q ss_pred             CCCCCC-CCCeEEEeeCCCcEEEEEccc---cccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE
Q 012712            3 DASNNN-NNKRARTSVDKALVDVWLREL---GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS   78 (458)
Q Consensus         3 ~~~~~~-~~~~l~~~~~d~~i~iw~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   78 (458)
                      .+.|+| ++++|++|+.||+|+|||+.+   +....                  ....+ +|.+.|.+++|+|++++|++
T Consensus        68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~------------------~~~~~-~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS------------------SSLTY-DCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS------------------CSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             EEEECCCCCCEEEEecCCceEEEeECcccccCcccc------------------eeeec-cCCCCEEEEEEeCCCCEEEE
Confidence            456788 999999999999999999986   43221                  11222 59999999999999999999


Q ss_pred             ecCCCeEEEEECC---Ccceeeeec---------cC--CCcceeEEE--EccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           79 GSDDRRVILWDWK---TERVKLSFH---------SG--HNDNVFQAK--IMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        79 ~~~d~~i~iwd~~---~~~~~~~~~---------~~--~~~~i~~~~--~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      ++.|+.|++||++   +++......         ..  +...+.++.  ++|  ++.+|++++.||.|++||+++++.+.
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE--EKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS--SCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            9999999999995   444332220         11  556677777  446  89999999999999999999888776


Q ss_pred             eeeccc--cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCc
Q 012712          143 TKLLGK--HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NAN  217 (458)
Q Consensus       143 ~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~  217 (458)
                      .  +..  |...|++++|+|++ .+|++++.||.|++||+++++....+...         +...|.+++|+|.   ++.
T Consensus       207 ~--~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~s~~~~  274 (437)
T 3gre_A          207 I--IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFG---------DHAPITHVEVCQFYGKNSV  274 (437)
T ss_dssp             E--EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCT---------TCEEEEEEEECTTTCTTEE
T ss_pred             E--EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecC---------CCCceEEEEeccccCCCcc
Confidence            6  444  89999999999998 78999999999999999998776665421         3447999966652   367


Q ss_pred             EEEEecCCCeEEEEecCCCccCCCccCCCC-C--CCcCCCc------ccc--ccccceeEEEeCCCCcEEEEec-CCcEE
Q 012712          218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-A--DYFCPPN------LIG--DEQVGITGLAFSDQSELLVSYN-DEFIY  285 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~--~~~~~~~------~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~  285 (458)
                      +|++++.||.|++||+++++.......... .  ..+.+..      ...  .|...|.+++|+ ++++|++++ ++.|+
T Consensus       275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~  353 (437)
T 3gre_A          275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV  353 (437)
T ss_dssp             EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence            999999999999999998764332221100 0  0000000      112  267889999999 778888888 66899


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce-eeeeEEEEecCCCcEEEEecCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      +||+.+                                      ......+.+|... ..+....+ +++..+++..   
T Consensus       354 ~wd~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---  391 (437)
T 3gre_A          354 MFSLNE--------------------------------------LSSSKAVISPSRFSDVFIPTQV-TANLTMLLRK---  391 (437)
T ss_dssp             EEETTC--------------------------------------GGGCEEEECC--CCCEEEEEEE-ETTEEEEEEE---
T ss_pred             EEECCC--------------------------------------cccceEEecccccCceEEEEEe-ecceEEEEEe---
Confidence            999987                                      3445556655322 12444555 6666666554   


Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCC--CCeEEEeecCCcEEEec
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPH--STVLASSGIESDIKILT  413 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iw~  413 (458)
                           |+............|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       392 -----~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          392 -----MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -----CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             -----cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                 333344445566779999999999998  78999999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.4e-40  Score=286.91  Aligned_cols=272  Identities=15%  Similarity=0.155  Sum_probs=206.8

Q ss_pred             eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCe
Q 012712           97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGL  174 (458)
Q Consensus        97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~  174 (458)
                      ..++.+|.+.|++++|+|  ++++|++++.|++|++||+.++.......+.+|...|.+++|+|+  + .+|++++.|++
T Consensus         6 ~~~~~~H~~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~   82 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRK   82 (316)
T ss_dssp             --------CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSC
T ss_pred             eeecccccCeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCE
Confidence            344578999999999999  999999999999999999987654444458899999999999863  5 68999999999


Q ss_pred             EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712          175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP  253 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  253 (458)
                      |++||+++++.......      .+  +...|.+++|+|++ +.+|++|+.|+.|++||++.....            ..
T Consensus        83 v~iWd~~~~~~~~~~~~------~~--h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~------------~~  142 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEH------AG--HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW------------EV  142 (316)
T ss_dssp             EEEECCSSSCCCEEEEE------CC--CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE------------EE
T ss_pred             EEEEECCCCcceEEEEc------cC--CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc------------ce
Confidence            99999988753322221      11  44579999999973 579999999999999999865210            01


Q ss_pred             CccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712          254 PNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP  333 (458)
Q Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (458)
                      ......|...+.+++|+|++..      +.+  .+                                             
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~------~~~--~~---------------------------------------------  169 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVP------GSL--ID---------------------------------------------  169 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC----------------------------------------------------------
T ss_pred             eeeeccccCCcceEEEccccCC------ccc--cc---------------------------------------------
Confidence            1234456778999999997420      000  00                                             


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC---eEEEEeecCCceeeEEEecCCC----CeEEEeecC
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVIEADRHVVNCIEPHPHS----TVLASSGIE  406 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~d  406 (458)
                           +...      . ..+++++|++|+.|++|++||+...   +++..+.+|...|.+++|+|++    ++||+++.|
T Consensus       170 -----~~~~------~-~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          170 -----HPSG------Q-KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ------CCS------C-CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             -----cccc------c-CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence                 0000      0 1345789999999999999999755   4677889999999999999987    789999999


Q ss_pred             CcEEEecCCccc-----ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          407 SDIKILTPNAAD-----RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       407 ~~i~iw~~~~~~-----~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      ++|++|++.+..     ...+..|...|.+++|+|+|.+||+++.|+.|+||+..
T Consensus       238 ~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          238 GRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999987631     22345677889999999999999999999999999964

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.1e-39  Score=290.98  Aligned_cols=297  Identities=20%  Similarity=0.285  Sum_probs=230.1

Q ss_pred             EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      ...+|...|.++++  ++++|++|+.|+.|++||+.+++....+ .+|...|.+++|    ++++|++|+.||.|++||+
T Consensus       128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY----DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred             cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence            33467778998877  7899999999999999999999987777 789999999998    6789999999999999999


Q ss_pred             ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      .+++....  +..|...|.+++|++   ..+++++.||.|++||+++++.........     +  +...|.+++|  + 
T Consensus       201 ~~~~~~~~--~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~--~~~~v~~~~~--~-  265 (435)
T 1p22_A          201 NTGEMLNT--LIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLV-----G--HRAAVNVVDF--D-  265 (435)
T ss_dssp             SSCCEEEE--ECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEEC-----C--CSSCEEEEEE--E-
T ss_pred             CCCcEEEE--EcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEec-----C--CCCcEEEEEe--C-
Confidence            98887655  778999999999975   478999999999999999887653222211     1  4557899999  3 


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG  294 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~  294 (458)
                      ++++++|+.||.|++||+++++..               .....|...|.++++  ++.++++++ ++.|++||+.+   
T Consensus       266 ~~~l~s~~~dg~i~vwd~~~~~~~---------------~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~---  325 (435)
T 1p22_A          266 DKYIVSASGDRTIKVWNTSTCEFV---------------RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC---  325 (435)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEE---------------EEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTT---
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEE---------------EEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC---
Confidence            579999999999999999887532               234457788999998  456888877 56899999987   


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                         ......+.+|...  +.+++|   ++++|++|+.||.|++||+.+
T Consensus       326 -----------------------------------~~~~~~~~~h~~~--v~~~~~---~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          326 -----------------------------------GACLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             -----------------------------------CCEEEEECCCSSC--EEEEEC---CSSEEEEEETTSCEEEEEHHH
T ss_pred             -----------------------------------CCEEEEEeCCcCc--EEEEEe---cCCEEEEEeCCCcEEEEECCC
Confidence                                               3456677788775  788876   788999999999999999987


Q ss_pred             Ce---------EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEec
Q 012712          375 GE---------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSA  436 (458)
Q Consensus       375 ~~---------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~  436 (458)
                      ++         ++..+.+|.+.|.+++|  ++++|++++.||.|++||+.+...........+..++.|.+
T Consensus       366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  434 (435)
T 1p22_A          366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS  434 (435)
T ss_dssp             HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeeec
Confidence            66         78899999999999999  78899999999999999998876655444445555665543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-39  Score=288.09  Aligned_cols=340  Identities=12%  Similarity=0.152  Sum_probs=235.8

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC--CcceeeeeccCCCcceeEEEEccCCC--CeEEEEEcCCCc
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQ  129 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~s~~~dg~  129 (458)
                      +..+.+|.+.|++++|+|++++||+|+.|+.|++||+.  +++.+..+ .+|...|++++|+|  +  +++|++++.||.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAH--PKFGTILASCSYDGK   80 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--GGGCSEEEEEETTSC
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCC--CCCCCEEEEeccCCE
Confidence            45688999999999999999999999999999999998  44555555 78999999999998  6  899999999999


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      |++||+.+++......+..|...|.+++|+|+  + .+|++++.|+.|++||++.+..........        +...|.
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------~~~~v~  151 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVN  151 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEEC--------CTTCEE
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecC--------CCCceE
Confidence            99999998874444557789999999999999  7 789999999999999999885544333211        455799


Q ss_pred             EEEECCC------------CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC---
Q 012712          208 AIAIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---  272 (458)
Q Consensus       208 ~~~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---  272 (458)
                      +++|+|.            ++.++++++.||.|++||+++.+...           ........|...|.+++|+|+   
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------~~~~~~~~h~~~v~~~~~sp~~~~  220 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----------VLESTLEGHSDWVRDVAWSPTVLL  220 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-----------EEEEEECCCSSCEEEEEECCCCSS
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----------eeEEEEecccCcEeEEEECCCCCC
Confidence            9999994            37899999999999999998754211           112344567889999999999   


Q ss_pred             CcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          273 SELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       273 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                      +.+|++++ ++.|++||+..+.....                                 ........|..  .+.+++| 
T Consensus       221 ~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------------------~~~~~~~~~~~--~v~~~~~-  264 (379)
T 3jrp_A          221 RSYLASVSQDRTCIIWTQDNEQGPWK---------------------------------KTLLKEEKFPD--VLWRASW-  264 (379)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSCCE---------------------------------EEESSSSCCSS--CEEEEEE-
T ss_pred             CCeEEEEeCCCEEEEEeCCCCCccce---------------------------------eeeeccccCCC--cEEEEEE-
Confidence            89999988 55899999987421110                                 01111122444  4899998 


Q ss_pred             cCCCcEEEEecCCCeEEEEEecCCeEEEEee---c-----CCceeeEEEecCC--CC-eEEEeecCCcEEEecCCccccc
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---A-----DRHVVNCIEPHPH--ST-VLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~-----~~~~v~~~~~s~~--~~-~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +|++++|++++.||.|++|++........+.   .     +...+....|.+.  .. .++....+..+.++...    .
T Consensus       265 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~  340 (379)
T 3jrp_A          265 SLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLI----M  340 (379)
T ss_dssp             CSSSCCEEEEESSSSEEEEEEEETTEEEEEEEEC----------------CEEEC--------------CTHHHH----H
T ss_pred             cCCCCEEEEecCCCcEEEEeCCCCCccccccceeccccCCCCCCchheeecccccchhhhhcccccccchhHHhh----h
Confidence            9999999999999999999998554333221   1     1122233333221  00 11111111122111110    0


Q ss_pred             ccccccccEEEEEEecCCcEEEeeecCC-ceEEEEEe
Q 012712          421 TLPTNIEQVCFSIYSADYWWSKSQNFSC-SILLFEWL  456 (458)
Q Consensus       421 ~~~~~~~~v~~~~~s~d~~~l~s~~~d~-~i~~w~~~  456 (458)
                      .............|+|||.+|+....+. .|..++..
T Consensus       341 ~~~~~~~~~~~~~fs~~g~~l~~~~~~~~~~~~~~~~  377 (379)
T 3jrp_A          341 KERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLP  377 (379)
T ss_dssp             HHTTCCTTCCCEEEETTTEEEEECTTSSSSEEEEECC
T ss_pred             hhccccCcceeeEECCCCeEeeecccccccEEEEecc
Confidence            1111123455678999999987654443 37776654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.7e-38  Score=285.70  Aligned_cols=280  Identities=15%  Similarity=0.161  Sum_probs=230.5

Q ss_pred             eeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712          107 VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT  186 (458)
Q Consensus       107 i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  186 (458)
                      ++.|.|++  + +.|++|. |++|+|||+.+++......+.+|...|++++|+|++ .+|++|+.||.|++||+++++.+
T Consensus       108 ~~~l~wS~--~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          108 LNLVDWSS--G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CBCEEECT--T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeEEECC--C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEE
Confidence            56799997  5 4677665 899999999999877766677888999999999999 78999999999999999999877


Q ss_pred             ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712          187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG  266 (458)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (458)
                      ..+..          +...+.+++++   +.++++|+.|+.+++||.+....              .......|...+..
T Consensus       183 ~~~~~----------h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~--------------~~~~~~~h~~~~~~  235 (420)
T 4gga_A          183 RNMTS----------HSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH--------------HVATLSGHSQEVCG  235 (420)
T ss_dssp             EEECC----------CSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC--------------EEEEEECCSSCEEE
T ss_pred             EEEeC----------CCCceEEEeeC---CCEEEEEeCCCceeEeeecccce--------------eeEEecccccceee
Confidence            66543          44467888775   46999999999999999886542              12345567889999


Q ss_pred             EEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712          267 LAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV  345 (458)
Q Consensus       267 ~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  345 (458)
                      +.++|+++++++++ ++.+++|+..++...                                  .........|...  |
T Consensus       236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----------------------------------~~~~~~~~~~~~~--V  279 (420)
T 4gga_A          236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGG----------------------------------WVPLQTFTQHQGA--V  279 (420)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEESSCCSSC----------------------------------SCCSEEECCCSSC--E
T ss_pred             eeecCCCCeeeeeeccccceEEeecccccc----------------------------------ceeeeeecccCCc--e
Confidence            99999999999988 558999998875321                                  1234555666664  8


Q ss_pred             eEEEEecCCCc-EEEE--ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee--cCCcEEEecCCccccc
Q 012712          346 KGVNFFGPKCE-YVVS--GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPNAADRA  420 (458)
Q Consensus       346 ~~~~~~s~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d~~i~iw~~~~~~~~  420 (458)
                      .+++| +|++. ++++  |+.|++|++||+.+++++..+..|. .+.++.|+|+++.|++++  .|+.|+|||+.++++.
T Consensus       280 ~~~~~-~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v  357 (420)
T 4gga_A          280 KAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV  357 (420)
T ss_dssp             EEEEE-CTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             eeeee-CCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence            89998 88654 5544  5689999999999999999888664 688999999999888764  7999999999988765


Q ss_pred             -ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          421 -TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       421 -~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                       .+.+|.+.|++++|+|||.+|+||+.|++|+|||..
T Consensus       358 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence             678899999999999999999999999999999964

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-38  Score=281.49  Aligned_cols=310  Identities=12%  Similarity=0.122  Sum_probs=223.5

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc----eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      ..+.+|.+.|++++|+|++++||+|+.|+.|++||+.++.    ....+ .+|...|.+++|+|..++++|++++.||.|
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            4578999999999999999999999999999999998764    33333 689999999999982238999999999999


Q ss_pred             EEeecccccc-------eeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeeccc---CCCC
Q 012712          131 RHAQILERGG-------VETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI---DDRR  198 (458)
Q Consensus       131 ~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~  198 (458)
                      ++||+.++..       .....+..|...|.+++|+|+  + .++++++.||.|++||+++++....+.....   ....
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            9999987642       223347789999999999999  7 7899999999999999999887665543111   0111


Q ss_pred             cceeecceEEEEECCC--CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC---
Q 012712          199 NYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---  273 (458)
Q Consensus       199 ~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  273 (458)
                      ...+...+.+++|+|+  ++.++++++.++.+.+|+....+..             .......|...|.+++|+|++   
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-------------VAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-------------EEEECCCCCSCEEEEEECCCSSCS
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-------------eeeecCCCCcceeEEEECCCCCCc
Confidence            1124557899999996  3689999999999988877665421             122344578899999999998   


Q ss_pred             -cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          274 -ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       274 -~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                       ++|++++ ++.|++||+..+......                                      ..+..  ....... 
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------------------~~~~~--~~~~~~~-  268 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEKLSPLAS--------------------------------------EESLT--NSNMFDN-  268 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEECC----------------------------------------------------------
T ss_pred             ceEEEEEcCCCeEEEEeCCCCcCcccc--------------------------------------CCccc--ceeccCC-
Confidence             7888888 558999999874322111                                      00000  0111222 


Q ss_pred             cCCCcEEEE----ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          352 GPKCEYVVS----GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       352 s~~~~~l~~----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      ++....++.    +.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..++..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          269 SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             ----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            333333333    334456677777778888999999999999999999999999999999999999876543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-40  Score=300.41  Aligned_cols=299  Identities=8%  Similarity=0.051  Sum_probs=215.1

Q ss_pred             CCCceEEEEEecCC---------CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           60 HRGCVNTVSFNTDG---------DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        60 h~~~v~~~~~s~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      +.+.|.+|+|+|++         ++||+|+.++..                        -..+|  +++.+++++.|++|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~--~~~~laS~s~D~tI  185 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------EPLNE--HLEMFDKEKHSSCI  185 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CEEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------Cccch--hhhhhccCCCCceE
Confidence            67899999999987         799998866420                        01368  99999999999999


Q ss_pred             EEeeccccccee--eeeccccccceEEEEEcCCC-----CeEEEEecCCCeEEEEeCCCCCccce--eee-cccCCCCcc
Q 012712          131 RHAQILERGGVE--TKLLGKHQGRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRTGAATEL--FTC-RPIDDRRNY  200 (458)
Q Consensus       131 ~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~-~~~~~~~~~  200 (458)
                      +||++.+++...  ...+..|.+.|.+++|+|++     ..+|++++.||+|++||+..+.....  ... .+.....+ 
T Consensus       186 ~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-  264 (524)
T 2j04_B          186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-  264 (524)
T ss_dssp             EEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-
T ss_pred             EEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-
Confidence            999998765432  12255678899999999971     26899999999999999987653210  000 00001112 


Q ss_pred             eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEE--EeCCCC-cEEE
Q 012712          201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL--AFSDQS-ELLV  277 (458)
Q Consensus       201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~  277 (458)
                       +...|.+++|+|+  ..|++|+.||+|++||+++.+              .+......|...|.++  +|+|++ .+|+
T Consensus       265 -h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~--------------~~~~~~~~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          265 -ADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPE--------------VPSFYDQVHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             -TTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCS--------------SCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred             -CCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCC--------------CceEEeecccccEEEEEEEcCCCCCeEEE
Confidence             3457999999985  489999999999999998653              1223456688999999  678888 8999


Q ss_pred             Eec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc
Q 012712          278 SYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE  356 (458)
Q Consensus       278 ~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~  356 (458)
                      +++ |++|++||+++                                      ......+.+|.....+.+++| +|+++
T Consensus       328 S~S~D~tvklWD~~~--------------------------------------~~~~~~~~~~~~~~~v~~v~f-sp~~~  368 (524)
T 2j04_B          328 TVAVDGYFYIFNPKD--------------------------------------IATTKTTVSRFRGSNLVPVVY-CPQIY  368 (524)
T ss_dssp             EEETTSEEEEECGGG--------------------------------------HHHHCEEEEECSCCSCCCEEE-ETTTT
T ss_pred             EeccCCeEEEEECCC--------------------------------------CCcccccccccccCcccceEe-CCCcC
Confidence            988 55899999976                                      333445555543223778998 99999


Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc-----ccccEEE
Q 012712          357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-----NIEQVCF  431 (458)
Q Consensus       357 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~~~~v~~  431 (458)
                      .+++++.|++|++||+.++.++.++.+|.+.|++++|+|++++|++|+.|++|++|++..........     +...+..
T Consensus       369 ~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~  448 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWK  448 (524)
T ss_dssp             EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEE
T ss_pred             eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEE
Confidence            99999999999999999999888899999999999999999999999999999999987653222211     1124789


Q ss_pred             EEEecCCcEE
Q 012712          432 SIYSADYWWS  441 (458)
Q Consensus       432 ~~~s~d~~~l  441 (458)
                      ++|+|+|..+
T Consensus       449 v~~sp~g~~~  458 (524)
T 2j04_B          449 WDYSIKDDKY  458 (524)
T ss_dssp             CBCCSSSCEE
T ss_pred             eccCCCCCeE
Confidence            9999999855

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.3e-38  Score=280.79  Aligned_cols=293  Identities=13%  Similarity=0.055  Sum_probs=225.0

Q ss_pred             ECCCcceeeeeccCCCcceeEEEEccCCC---CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712           89 DWKTERVKLSFHSGHNDNVFQAKIMPFTD---DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV  165 (458)
Q Consensus        89 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  165 (458)
                      +....+.+..+ .+|.+.|++++|+|  +   +++|++++.||.|++||+.+........+.+|...|.+++|+|++ .+
T Consensus        25 ~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~  100 (368)
T 3mmy_A           25 NHNPMKDIEVT-SSPDDSIGCLSFSP--PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SK  100 (368)
T ss_dssp             SSCTTCCEECS-SCCSSCEEEEEECC--TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SE
T ss_pred             CCCCcceeEec-cCCCCceEEEEEcC--CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CE
Confidence            34444444444 79999999999999  8   699999999999999999874444434578899999999999998 68


Q ss_pred             EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE--CCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      |++++.||.|++||+++++......           +...|.+++|  +|+ +.+|++++.||.|++||+++.+....  
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~--  166 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAIQIAQ-----------HDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMV--  166 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEE--
T ss_pred             EEEEcCCCcEEEEEcCCCCceeecc-----------ccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEE--
Confidence            9999999999999999887665433           5567999999  887 68999999999999999998763221  


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS  323 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (458)
                                   ... ...+.++.+.++ ..+++..++.+.+|++.....                             
T Consensus       167 -------------~~~-~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-----------------------------  202 (368)
T 3mmy_A          167 -------------LQL-PERCYCADVIYP-MAVVATAERGLIVYQLENQPS-----------------------------  202 (368)
T ss_dssp             -------------EEC-SSCEEEEEEETT-EEEEEEGGGCEEEEECSSSCE-----------------------------
T ss_pred             -------------Eec-CCCceEEEecCC-eeEEEeCCCcEEEEEeccccc-----------------------------
Confidence                         111 235666666654 344445577899999876321                             


Q ss_pred             CCCcccccCceee-cCccceeeeeEEEEecCCCc----EEEEecCCCeEEEEEecCC---eEEEEeecCCc---------
Q 012712          324 TANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCE----YVVSGSDCGRIFIWKKKGG---ELIRVIEADRH---------  386 (458)
Q Consensus       324 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~----~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~---------  386 (458)
                              ..... ..+...  ...+.+ .++..    .+++++.||.|++|++...   +.+..+.+|..         
T Consensus       203 --------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (368)
T 3mmy_A          203 --------EFRRIESPLKHQ--HRCVAI-FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ  271 (368)
T ss_dssp             --------EEEECCCSCSSC--EEEEEE-EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred             --------hhhhccccccCC--CceEEE-cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence                    01111 111121  333333 33333    3999999999999999887   56778888876         


Q ss_pred             ---eeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          387 ---VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       387 ---~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                         .|++++|+|++++|++++.||.|++||+.++++. .+..|...|.+++|+|+|++|++++.|+..+.|+
T Consensus       272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence               6999999999999999999999999999988665 6677888999999999999999999987655544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-40  Score=290.73  Aligned_cols=304  Identities=13%  Similarity=0.092  Sum_probs=226.1

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      .-...|.+++|+|||+++||++.|++|+  |...++   .+ .+|...|.+++|+|  +|       .++.+.+|+.   
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-~gh~~~v~~V~FsP--dg-------~~~~~~~~~~---   74 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-NCNSKNLFHVKEFP--LE-------FENKLDFELA---   74 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-SSBGGGTEEEEEEC--CC-------CCCTTTTSCC---
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-cCCCccEEEEEECC--CC-------CcceEEEEeC---
Confidence            3457899999999999999999999999  644443   33 68999999999999  87       4555555554   


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      +......+ .|...|.+++|+|+| .+|++++.||.|++||.+.  ....+. +.     .+.....+.+++|+|+ +++
T Consensus        75 ~~~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~-----~~~~~~sv~svafSPD-G~~  143 (588)
T 2j04_A           75 QQNGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SK-----GNLSSRTYHCFEWNPI-ESS  143 (588)
T ss_dssp             CSSCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CS-----SCSTTTCEEEEEECSS-SSC
T ss_pred             CCceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CC-----CccccccEEEEEEcCC-CCE
Confidence            32222112 458899999999999 7899999999999999544  222222 11     0001235899999998 799


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~  298 (458)
                      |++|+.||+|++||+.+++.... .+   ...........+|...|.+++|+|+| +++++.++.+++|++..+..    
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~-~~---i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~----  214 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTP-EF---YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH----  214 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCC-CC---EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS----
T ss_pred             EEEEcCCCEEEEEECCCCccccc-cc---eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc----
Confidence            99999999999999988642110 00   00000011124577899999999999 66666677999999876421    


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL  377 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  377 (458)
                                                     ......+ .+|..  .|.+++| +  |++||+++ +++|++||+.+++.
T Consensus       215 -------------------------------~~~~~tL~~~h~~--~V~svaF-s--g~~LASa~-~~tIkLWd~~~~~~  257 (588)
T 2j04_A          215 -------------------------------QPVSRMIQNASRR--KITDLKI-V--DYKVVLTC-PGYVHKIDLKNYSI  257 (588)
T ss_dssp             -------------------------------CCCEEEEECCCSS--CCCCEEE-E--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred             -------------------------------ccceeeecccccC--cEEEEEE-E--CCEEEEEe-CCeEEEEECCCCeE
Confidence                                           0112345 35654  4899999 7  68999887 69999999988877


Q ss_pred             EEEeecCCceeeEEEe--cCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          378 IRVIEADRHVVNCIEP--HPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       378 ~~~~~~~~~~v~~~~~--s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .....+|.+.+..++|  +||+..|+++++||+ ++|...               .++++||+..+++.  |+++++|+.
T Consensus       258 ~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------~~~~spd~~l~a~~--d~~v~lW~~  319 (588)
T 2j04_A          258 SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------ELHVTADNIIAPYL--EKKFKKWST  319 (588)
T ss_dssp             EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------SEEEECCCSSHHHH--HHHHHHTTT
T ss_pred             EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------cEEECCCceEEEEc--CCEEEEEEC
Confidence            5444489999999999  999999999999999 999977               26699999888774  888888864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.2e-36  Score=272.83  Aligned_cols=330  Identities=11%  Similarity=0.085  Sum_probs=249.6

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEE
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWD   89 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd   89 (458)
                      .++++++.|+.|++||+++++++.                     .+.+|. .+.+++|+|++++| ++++.|+.|++||
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~---------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d   60 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA---------------------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIID   60 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE---------------------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE---------------------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEE
Confidence            468889999999999999887663                     356564 48999999999976 6777899999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEE
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT  168 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  168 (458)
                      +.+++.+..+ .. ...+.+++|+|  ++++|+ +++.++.|++||+.+++....  +. +...+.+++|+|++..++++
T Consensus        61 ~~~~~~~~~~-~~-~~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~--~~-~~~~~~~~~~s~dg~~l~~~  133 (391)
T 1l0q_A           61 TATNNVIATV-PA-GSSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGT--VK-TGKSPLGLALSPDGKKLYVT  133 (391)
T ss_dssp             TTTTEEEEEE-EC-SSSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEE--EE-CSSSEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEE-EC-CCCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEE--Ee-CCCCcceEEECCCCCEEEEE
Confidence            9999887776 33 34899999999  998875 455679999999988776554  33 34568999999999656688


Q ss_pred             ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712          169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      ++.++.|++||+++++....+..           ...+.+++|+|++..++++++.++.|++||+++.+....       
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-------  195 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSV-----------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT-------  195 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEEC-----------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-------
T ss_pred             eCCCCEEEEEECCCCcEEEEEec-----------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-------
Confidence            89999999999999887666542           234689999998544447888999999999988753211       


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEec----CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                              . .+...+.+++|+|++++|++++    ++.|++||+.++                                
T Consensus       196 --------~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--------------------------------  234 (391)
T 1l0q_A          196 --------V-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--------------------------------  234 (391)
T ss_dssp             --------E-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--------------------------------
T ss_pred             --------E-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC--------------------------------
Confidence                    1 1345788999999999888775    457999998763                                


Q ss_pred             CCcccccCceeecCccceeeeeEEEEecCCCcEE-EEecCCCeEEEEEecCCeEEEEeecCCceee---EEEecCCC---
Q 012712          325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV-VSGSDCGRIFIWKKKGGELIRVIEADRHVVN---CIEPHPHS---  397 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~---~~~~s~~~---  397 (458)
                            .....+..+..   +.+++| +|++++| ++++.|+.|++||+.+++.+..+..|..+..   .+.+.|++   
T Consensus       235 ------~~~~~~~~~~~---~~~~~~-s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (391)
T 1l0q_A          235 ------KITARIPVGPD---PAGIAV-TPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY  304 (391)
T ss_dssp             ------EEEEEEECCSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred             ------eEEEEEecCCC---ccEEEE-ccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence                  33445555543   678888 9999987 5778899999999999999998887765431   12222211   


Q ss_pred             -------------------CeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEe
Q 012712          398 -------------------TVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKS  443 (458)
Q Consensus       398 -------------------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  443 (458)
                                         ..+...+.|...++|+...+.....   ..  ....|+|+|.|.++
T Consensus       305 ~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~---~~--~~~~~~~~g~y~~~  364 (391)
T 1l0q_A          305 PSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKK---QN--PTHTYSETGIYTVR  364 (391)
T ss_dssp             CBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECS---SS--CEECCSSCEEEEEE
T ss_pred             cccccccccccccccccceEEEEeCCCCceEEEEECCCCcccCc---CC--CeEEeCCCceEEEE
Confidence                               2355667788999999987754321   11  23679999977665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.1e-37  Score=267.36  Aligned_cols=280  Identities=14%  Similarity=0.150  Sum_probs=224.7

Q ss_pred             eeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712          107 VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT  186 (458)
Q Consensus       107 i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  186 (458)
                      .+.|+||+  ++ +|++| .|++|++||+.+++......+.+|...|++++|+|++ ++|++|+.||.|++||+++++.+
T Consensus        28 ~~~l~WS~--~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSS--GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECT--TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECC--CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeE
Confidence            46799998  65 66665 5899999999999887776677889999999999999 68999999999999999999887


Q ss_pred             ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712          187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG  266 (458)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (458)
                      ..+..          +...+.++.+.   +..+++++.++.+++|+......              .......|...+..
T Consensus       103 ~~~~~----------h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  155 (318)
T 4ggc_A          103 RNMTS----------HSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH--------------HVATLSGHSQEVCG  155 (318)
T ss_dssp             EEEEC----------CSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC--------------EEEEEECCSSCEEE
T ss_pred             EEecC----------ccceEEEeecC---CCEEEEEecCCceEeeecCCCce--------------eEEEEcCccCceEE
Confidence            76653          33345555554   46999999999999999877542              23345567889999


Q ss_pred             EEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712          267 LAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV  345 (458)
Q Consensus       267 ~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  345 (458)
                      +.+.+++++|++++ ++.|++||+.+++...                                  ........+...  +
T Consensus       156 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------------------------~~~~~~~~~~~~--v  199 (318)
T 4ggc_A          156 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGW----------------------------------VPLQTFTQHQGA--V  199 (318)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEESSCBTTBS----------------------------------CCSEEECCCCSC--E
T ss_pred             EEEcCCCCEEEEEecCcceeEEECCCCcccc----------------------------------cceeeecccCCc--e
Confidence            99999999999988 4589999998743211                                  123334444443  7


Q ss_pred             eEEEEecCCCcE---EEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee--cCCcEEEecCCccccc
Q 012712          346 KGVNFFGPKCEY---VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG--IESDIKILTPNAADRA  420 (458)
Q Consensus       346 ~~~~~~s~~~~~---l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~d~~i~iw~~~~~~~~  420 (458)
                      .++++ +|++..   +++++.++.|++||........... +...+..+.|+|+++.+++++  .|+.|++||+.++++.
T Consensus       200 ~~~~~-~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          200 KAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV  277 (318)
T ss_dssp             EEEEE-CTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             EEEEe-cCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence            78887 776653   3467889999999998887766654 667799999999999887654  7999999999988765


Q ss_pred             -ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          421 -TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       421 -~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                       .+.+|.+.|++++|+|||++|+|++.||+|+|||..
T Consensus       278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence             678899999999999999999999999999999964

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.4e-38  Score=284.63  Aligned_cols=285  Identities=12%  Similarity=0.087  Sum_probs=220.5

Q ss_pred             CCCCC-eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEecCCCe
Q 012712            7 NNNNK-RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRR   84 (458)
Q Consensus         7 ~~~~~-~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~   84 (458)
                      +|+.. ++++++.||.|+||++.......                 .....+.+|.+.|++++|+| ++++|++|+.|+.
T Consensus        43 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-----------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~  105 (402)
T 2aq5_A           43 NPKFMALICEASGGGAFLVLPLGKTGRVD-----------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT  105 (402)
T ss_dssp             CSSEEEEEBCCSSSCCEEEEETTCCEECC-----------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCeEEEEEEEcCCCEEEEEECccCCCCC-----------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence            44433 34457889999999996432211                 12345789999999999999 9999999999999


Q ss_pred             EEEEECCCc-------ceeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccceeeeeccccccceEEE
Q 012712           85 VILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL  156 (458)
Q Consensus        85 i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~  156 (458)
                      |++||+.++       +.+..+ .+|...|.+++|+|  ++ .+|++++.||.|++||+.+++.........|...|.++
T Consensus       106 v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  182 (402)
T 2aq5_A          106 VMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV  182 (402)
T ss_dssp             EEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred             EEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence            999999987       444555 78999999999999  87 69999999999999999988766552117899999999


Q ss_pred             EEcCCCCeEEEEecCCCeEEEEeCCCCCccceee-ecccCCCCcceeecceEEEEECCCCCcEEEEe---cCCCeEEEEe
Q 012712          157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT-CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA---GSDEYTRLYD  232 (458)
Q Consensus       157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~i~i~d  232 (458)
                      +|+|++ .+|++++.|+.|++||+++++....+. .+         ....+.+++|+|+ +.++++|   +.|+.|++||
T Consensus       183 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          183 DWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPH---------EGTRPVHAVFVSE-GKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             EECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSS---------CSSSCCEEEECST-TEEEEEEECTTCCEEEEEEE
T ss_pred             EECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCC---------CCCcceEEEEcCC-CcEEEEeccCCCCceEEEEc
Confidence            999998 688999999999999999987766552 21         1123788999997 6888888   7899999999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM  312 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
                      +++.+.                        .+....                                            
T Consensus       252 ~~~~~~------------------------~~~~~~--------------------------------------------  263 (402)
T 2aq5_A          252 TKHLEE------------------------PLSLQE--------------------------------------------  263 (402)
T ss_dssp             TTBCSS------------------------CSEEEE--------------------------------------------
T ss_pred             CccccC------------------------CceEEe--------------------------------------------
Confidence            876531                        000000                                            


Q ss_pred             CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCCeE-EEEeec--CCcee
Q 012712          313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGEL-IRVIEA--DRHVV  388 (458)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v  388 (458)
                                             + .+..  .+.+++| +|++++|+ +|+.||.|++||+.++++ +..+..  |...|
T Consensus       264 -----------------------~-~~~~--~v~~~~~-s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v  316 (402)
T 2aq5_A          264 -----------------------L-DTSS--GVLLPFF-DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ  316 (402)
T ss_dssp             -----------------------C-CCCS--SCEEEEE-ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCC
T ss_pred             -----------------------c-cCCC--ceeEEEE-cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcc
Confidence                                   0 1111  2677888 99999986 566799999999998874 455544  45899


Q ss_pred             eEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          389 NCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       389 ~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      .+++|+|++.++++  .++.+++|++.++..
T Consensus       317 ~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          317 RGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             cceEEeccccccee--cceeEEEEEcCCCcE
Confidence            99999999998875  466999999987643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=283.27  Aligned_cols=330  Identities=9%  Similarity=0.138  Sum_probs=222.1

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC------------CceEEEEEe
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR------------GCVNTVSFN   70 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~s   70 (458)
                      .+.|+|++.+||+|+.||.|+|||+.+++....          .....+++...+.+|.            +.|++++|+
T Consensus        33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQS----------HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECC-----C----------CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc----------ccccceeEecccccccccccccccccccCceEEEEEc
Confidence            456899999999999999999999997763211          0112345567788998            889999999


Q ss_pred             cCC--CEEEEecCCCeEEEEECCCccee---------------------------------------eeeccCCCcceeE
Q 012712           71 TDG--DILISGSDDRRVILWDWKTERVK---------------------------------------LSFHSGHNDNVFQ  109 (458)
Q Consensus        71 ~~~--~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~i~~  109 (458)
                      |++  .+|++++.|+.|++||+.++...                                       ..+..+|...|.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            998  79999999999999998764431                                       1234689999999


Q ss_pred             EEEccCCCCeEEEEEcCCCcEEEeecccccceeee------eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712          110 AKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK------LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG  183 (458)
Q Consensus       110 ~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  183 (458)
                      ++|+|  ++++|+++ .|+.|++||+.........      .+.+|...|.+++|+|+++.+|++++.||.|++||++++
T Consensus       183 ~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          183 ISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             EEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             EEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            99999  99999998 7999999999854332221      366899999999999998678999999999999999988


Q ss_pred             Cc----cceeeecccCCC--CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCcc
Q 012712          184 AA----TELFTCRPIDDR--RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNL  256 (458)
Q Consensus       184 ~~----~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~  256 (458)
                      +.    ...+..+.....  ....+...|.+++|+|+ +.+|++++. +.|++||+++ .+....               
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~---------------  322 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVET---------------  322 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCC---------------
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccce---------------
Confidence            75    344432110000  00001127999999997 789999988 9999999987 443222               


Q ss_pred             cccccc---------------ceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          257 IGDEQV---------------GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       257 ~~~~~~---------------~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                      ...|..               .+..++|+|++++|++++ ++.|++||+.++..... ..+.......  ... ....+.
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~--~~~-~~~~~~  398 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPR--TVL-KPRKVC  398 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTT--CBC-CCCCEE
T ss_pred             eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccc--ccc-CCcccc
Confidence            111211               134599999999999988 55899999988643210 0000000000  000 000000


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                      .....    ...............|..++| +|++++||+++.++ +++|..
T Consensus       399 ~~~~~----~~~~~~~~~~~~~~~i~~~~~-~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          399 ASGKR----KKDEISVDSLDFNKKILHTAW-HPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CSSCC----CTTCEEGGGCCTTSCCCEEEE-CSSSSEEEEECSSC-EEEEEC
T ss_pred             ccCCc----ccccccccccccCCceeEEEE-CCCCCEEEEEecce-eeeecc
Confidence            00000    000000111111124889999 99999999998775 788864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.5e-37  Score=270.05  Aligned_cols=279  Identities=14%  Similarity=0.083  Sum_probs=225.3

Q ss_pred             eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeeeeccccccceEEEEEcCCCCe-EEEEecCCCeEE
Q 012712           99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPH-VFYTCGEDGLVQ  176 (458)
Q Consensus        99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~  176 (458)
                      +..+|.+.|++++|+|  ++++|++++.||.|++|++.++.. .....+..|...|.+++|+|++ . +|++++.||.|+
T Consensus         6 ~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEE
T ss_pred             cccCCCCcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEE
Confidence            3468999999999999  999999999999999999987761 1112355799999999999998 7 899999999999


Q ss_pred             EEeC-CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC---------CccCCCccCCC
Q 012712          177 HFDL-RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK---------YKWDGSTDFGQ  246 (458)
Q Consensus       177 iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~  246 (458)
                      +||+ ++++. ..+...        .+...|.+++|+|  +.++++++.|+.|++||+++         .+..       
T Consensus        83 ~wd~~~~~~~-~~~~~~--------~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-------  144 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNN--------EANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-------  144 (342)
T ss_dssp             EECSSSSSSE-EECBSC--------CCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-------
T ss_pred             EEEeccCCce-Eecccc--------CCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee-------
Confidence            9999 77754 222110        0334799999999  57999999999999999986         4321       


Q ss_pred             CCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC-CCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 012712          247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA  325 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (458)
                              .... +...+.+++|+|++ +++.+.++.|++||+.+ ...                               
T Consensus       145 --------~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~-------------------------------  183 (342)
T 1yfq_A          145 --------NNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDD-------------------------------  183 (342)
T ss_dssp             --------SSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTC-------------------------------
T ss_pred             --------eEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccc-------------------------------
Confidence                    1122 56789999999998 44444466899999876 321                               


Q ss_pred             CcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCC------eEEEEeecCCc---------eee
Q 012712          326 NTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGG------ELIRVIEADRH---------VVN  389 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~---------~v~  389 (458)
                           ........|..  .+.+++| +| +++++++++.||.|++|++...      +....+..|..         .|.
T Consensus       184 -----~~~~~~~~~~~--~i~~i~~-~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (342)
T 1yfq_A          184 -----NGTIEESGLKY--QIRDVAL-LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN  255 (342)
T ss_dssp             -----CCEEEECSCSS--CEEEEEE-CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred             -----cceeeecCCCC--ceeEEEE-CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence                 11122333444  3889998 99 9999999999999999999877      77888888865         899


Q ss_pred             EEEecCCCCeEEEeecCCcEEEecCCccccc-ccccc-cccEEEEEEecCCcEEEeeecCCc
Q 012712          390 CIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTN-IEQVCFSIYSADYWWSKSQNFSCS  449 (458)
Q Consensus       390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~-~~~v~~~~~s~d~~~l~s~~~d~~  449 (458)
                      +++|+|++++|++++.||.|++||+.+++.. .+..| ...|.+++  |++.+|++++.||.
T Consensus       256 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             EEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            9999999999999999999999999988765 56677 88899999  99999999999998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-37  Score=273.47  Aligned_cols=263  Identities=16%  Similarity=0.182  Sum_probs=208.7

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEE
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHF  178 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iw  178 (458)
                      .+|...|++++|+|  ++++|++++.||.|++|++..........+.+|...|.+++|+|+  + .+|++++.||.|++|
T Consensus         8 ~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            8 NAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIW   84 (379)
T ss_dssp             EECCCCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEE
T ss_pred             cCCcccEEEEEEcC--CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEE
Confidence            78999999999999  999999999999999999985444444458889999999999977  6 789999999999999


Q ss_pred             eCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      |+++++........      .  +...|.+++|+|++ +.++++++.|+.|++||++......             ....
T Consensus        85 d~~~~~~~~~~~~~------~--~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-------------~~~~  143 (379)
T 3jrp_A           85 KEENGRWSQIAVHA------V--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-------------PIII  143 (379)
T ss_dssp             EEETTEEEEEEEEC------C--CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-------------EEEE
T ss_pred             EcCCCceeEeeeec------C--CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-------------eEEe
Confidence            99988632222211      1  44579999999973 5799999999999999998764211             1223


Q ss_pred             cccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712          258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK  337 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (458)
                      ..|...|.+++|+|......                                                            
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~------------------------------------------------------------  163 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEED------------------------------------------------------------  163 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------------------------------------------------------------
T ss_pred             cCCCCceEEEEEcCcccccc------------------------------------------------------------
Confidence            34566777777777531100                                                            


Q ss_pred             CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe----EEEEeecCCceeeEEEecCC---CCeEEEeecCCcEE
Q 012712          338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE----LIRVIEADRHVVNCIEPHPH---STVLASSGIESDIK  410 (458)
Q Consensus       338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~i~  410 (458)
                              .... ..+++++|++++.||.|++||+.+++    .+..+.+|...|.+++|+|+   +++|++++.||.|+
T Consensus       164 --------~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~  234 (379)
T 3jrp_A          164 --------GEHN-GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI  234 (379)
T ss_dssp             ---------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             --------cccc-CCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence                    0001 15689999999999999999998764    55678889999999999999   89999999999999


Q ss_pred             EecCCccc------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          411 ILTPNAAD------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       411 iw~~~~~~------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +|++..+.      ......|...|.+++|+|+|++|++++.||.|++|++-
T Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99998763      22334477889999999999999999999999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.4e-37  Score=279.18  Aligned_cols=273  Identities=20%  Similarity=0.281  Sum_probs=229.2

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      .+|...|.++.|    ++++|++|+.||.|++||+.+++....  +.+|...|.+++|  ++ .++++|+.||.|++||+
T Consensus       130 ~~~~~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE--ECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE--EcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEEC
Confidence            356677888776    788999999999999999988877655  7889999999999  45 68999999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      ++++....+..          +...|.+++|++   .++++|+.||.|++||+++.+...            ......+|
T Consensus       201 ~~~~~~~~~~~----------h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~------------~~~~~~~~  255 (435)
T 1p22_A          201 NTGEMLNTLIH----------HCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDIT------------LRRVLVGH  255 (435)
T ss_dssp             SSCCEEEEECC----------CCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCE------------EEEEECCC
T ss_pred             CCCcEEEEEcC----------CCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCce------------eeeEecCC
Confidence            99987766643          455799999975   489999999999999998765211            11345567


Q ss_pred             ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...|.+++|  +++++++++ ++.|++||+.+                                      ......+.+|
T Consensus       256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~--------------------------------------~~~~~~~~~~  295 (435)
T 1p22_A          256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTST--------------------------------------CEFVRTLNGH  295 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTT--------------------------------------CCEEEEEECC
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCc--------------------------------------CcEEEEEcCC
Confidence            889999999  777888887 55899999987                                      3456677777


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc-
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD-  418 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~-  418 (458)
                      ...  +.++.+   +++++++|+.||.|++||+.+++++..+.+|...|.+++|  ++++|++|+.||.|++||+.+++ 
T Consensus       296 ~~~--v~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~  368 (435)
T 1p22_A          296 KRG--IACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALD  368 (435)
T ss_dssp             SSC--EEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred             CCc--EEEEEe---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCC
Confidence            775  778877   4689999999999999999999999999999999999999  78999999999999999997664 


Q ss_pred             ---------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          419 ---------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       419 ---------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                               ...+..|.+.|.+++|  ++.+|++++.||.|++||+.
T Consensus       369 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          369 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             TTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             ccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence                     3356788889999999  88999999999999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.9e-36  Score=262.37  Aligned_cols=301  Identities=14%  Similarity=0.093  Sum_probs=211.1

Q ss_pred             EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712           87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF  166 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  166 (458)
                      ||++.+...+... ..|...|++++|+|  |+++|++|+.++ +++|++.+.+.....    +...+..+++.++++.++
T Consensus         3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A            3 LGSMITRNPIVPE-NHVSNPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHPVAHIMSQ----EMRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             -----------------CCCCCEEEECT--TSSEEEEECSSE-EEEEEETTEEEEEEE----ECSCCCEEEECTTSSEEE
T ss_pred             cccccccCCcccc-ccCCCceEEEEECC--CCCEEEEEcCCE-EEEEecCCcceeeee----ecCCeEEEEEcCCCCEEE
Confidence            4566666665544 68999999999999  999999998775 789998776554332    223577888888885555


Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC-ccCCCccCC
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFG  245 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~  245 (458)
                      ++++.|+.|++||+++++.+..+.           ....|.+++++++   .++++ .++.|++||+.+. +....    
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~-----------~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~----  135 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK-----------VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITD----  135 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSC----
T ss_pred             EEECCccEEEEEECCCCcEEEEEE-----------CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEE----
Confidence            788889999999999998877665           3347999999985   33333 4789999999876 32211    


Q ss_pred             CCCCCcCCCccccccccceeEEEeCCCCcEEEEe--c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712          246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP  322 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (458)
                                +..    +...+++++  .+++.+  + ++.|++||+.++..........                    
T Consensus       136 ----------~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~--------------------  179 (355)
T 3vu4_A          136 ----------DIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV--------------------  179 (355)
T ss_dssp             ----------CEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------
T ss_pred             ----------ecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc--------------------
Confidence                      111    334556666  566653  4 5689999998753211100000                    


Q ss_pred             CCCCcccccC-ceeecCccceeeeeEEEEecCCCcEEEEecCCCe-EEEEEecCCeEEEEee-c-CCceeeEEEecCCCC
Q 012712          323 STANTDVRIA-PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIE-A-DRHVVNCIEPHPHST  398 (458)
Q Consensus       323 ~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~  398 (458)
                         ......+ ...+.+|...  |.+++| +|+|++|++|+.|++ |++||+.+++++.++. + |...|.+++|+|+++
T Consensus       180 ---~~~~~~p~~~~~~~h~~~--v~~~~~-s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~  253 (355)
T 3vu4_A          180 ---QQKAILGKGVLIKAHTNP--IKMVRL-NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS  253 (355)
T ss_dssp             ----------CCEEECCCSSC--EEEEEE-CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC
T ss_pred             ---cccccCcccEEEEccCCc--eEEEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC
Confidence               0000112 6778889885  999999 999999999999998 9999999999999998 5 999999999999999


Q ss_pred             eEEEeecCCcEEEecCCcccccc---cc---------------------cccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          399 VLASSGIESDIKILTPNAADRAT---LP---------------------TNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       399 ~l~s~~~d~~i~iw~~~~~~~~~---~~---------------------~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +|++++.|++|++|++..+....   +.                     ........++|+|||++|++++.||.+.+|+
T Consensus       254 ~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          254 KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999997653211   00                     0112236789999999999999999999998


Q ss_pred             Ee
Q 012712          455 WL  456 (458)
Q Consensus       455 ~~  456 (458)
                      +.
T Consensus       334 ~~  335 (355)
T 3vu4_A          334 VV  335 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.7e-36  Score=270.80  Aligned_cols=270  Identities=11%  Similarity=0.028  Sum_probs=175.7

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee---eeccccccceEEEEEcC--------CCCeEEEEec
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---KLLGKHQGRAHKLAIEP--------GSPHVFYTCG  170 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~---~~~~~~~~~v~~~~~~~--------~~~~~l~s~~  170 (458)
                      .|........+.+  ++.+|++++.|++|++||+..++....   ..+.+|.+.|++++|+|        ++ ++|++++
T Consensus        87 ~~~~~~~~~~~~~--~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s  163 (393)
T 4gq1_A           87 LHDGDGNVNSSPV--YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVG  163 (393)
T ss_dssp             ----------CCE--EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEE
T ss_pred             ccCCCcceeecCC--CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEE
Confidence            3444555566777  889999999999999999988765332   23678999999999998        56 7999999


Q ss_pred             CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC
Q 012712          171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY  250 (458)
Q Consensus       171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  250 (458)
                      .|++|++||++++.....+..          +...+.+++|+|+++++|++++.|+.|++||+++++......       
T Consensus       164 ~D~tv~~Wd~~~~~~~~~~~~----------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~-------  226 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPILAGYP----------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS-------  226 (393)
T ss_dssp             TTSEEEEEEEETTEEEEEEEE----------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------------
T ss_pred             CCCeEEEEECCCCceeeeecC----------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc-------
Confidence            999999999988766544432          445789999999866789999999999999998875321100       


Q ss_pred             cCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccc
Q 012712          251 FCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR  330 (458)
Q Consensus       251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (458)
                          .....+...+......+.                                                          
T Consensus       227 ----~~~~~~~~~~~s~~~~~~----------------------------------------------------------  244 (393)
T 4gq1_A          227 ----QTELVKNPWLLTLNTLPL----------------------------------------------------------  244 (393)
T ss_dssp             --------CSCCCSEEEESGGG----------------------------------------------------------
T ss_pred             ----ccCCcccceEEecccccc----------------------------------------------------------
Confidence                000000011111111110                                                          


Q ss_pred             cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC---------------
Q 012712          331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP---------------  395 (458)
Q Consensus       331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---------------  395 (458)
                      .......+|...  +.++.|+.|+++.|++++.|+++++||+.+++....+..|...+..+.+.|               
T Consensus       245 ~~~~~~~~~~~~--v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          245 VNTCHSSGIASS--LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             C------CCSSS--CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred             eeeeeccccccc--ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence            011122344443  778888679999999999999999999988877777766655554444433               


Q ss_pred             -----CCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          396 -----HSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       396 -----~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                           ++.++++|+.||.|++||+.+++.. ....|...|.+++|||||++||+++.|| +.+|+.+
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence                 3346778889999999999988665 5677888999999999999999998776 6666653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.7e-36  Score=265.64  Aligned_cols=309  Identities=15%  Similarity=0.118  Sum_probs=210.7

Q ss_pred             eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEEcC--CCCeEEEEecCC
Q 012712           97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEP--GSPHVFYTCGED  172 (458)
Q Consensus        97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~d  172 (458)
                      ..++.+|.+.|++++|+|  ++++|++++.||.|++|++.++..  .....+.+|...|.+++|+|  ++ .+|++++.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~d   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDF--YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYD   80 (351)
T ss_dssp             CCEECCCSSCEEEEEECS--SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETT
T ss_pred             cccCcccccceeEEEEcC--CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCC
Confidence            344579999999999999  999999999999999999987643  22334678999999999999  46 789999999


Q ss_pred             CeEEEEeCCCCCccc------eeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712          173 GLVQHFDLRTGAATE------LFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFG  245 (458)
Q Consensus       173 g~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  245 (458)
                      |.|++||+++++...      .....     ..  +...|.+++|+|+. +.++++++.||.|++||+++.+........
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~-----~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  153 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTL-----ND--SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT  153 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEE-----CC--CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred             CeEEEEecCCCcccccccCcceeeee-----cc--cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence            999999998875321      11110     11  45579999999962 579999999999999999987754432211


Q ss_pred             CCCCCcCCCccccccccceeEEEeCCC---CcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          246 QPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                      ....  ........+...+.+++|+|+   +.++++++.+ .+.+|+...+.                            
T Consensus       154 ~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------  203 (351)
T 3f3f_A          154 SEMK--VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----------------------------  203 (351)
T ss_dssp             EEEE--SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----------------------------
T ss_pred             cccc--ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----------------------------
Confidence            1100  011122346778999999997   8888888866 56555544321                            


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCC----cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS  397 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (458)
                              ......+.+|...  |.+++| +|++    ++|++++.||.|++||+.++........+...+.....++..
T Consensus       204 --------~~~~~~~~~h~~~--i~~~~~-~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
T 3f3f_A          204 --------LHVAAKLPGHKSL--IRSISW-APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV  272 (351)
T ss_dssp             --------EEEEEECCCCCSC--EEEEEE-CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred             --------eeeeeecCCCCcc--eeEEEE-CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence                    1235566677774  899998 9998    899999999999999998876555544444445555555555


Q ss_pred             CeEEEee----cCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          398 TVLASSG----IESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       398 ~~l~s~~----~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      ..++.+.    ....+.+|+....+.. .+..|...|++++|+|++++|++++.||.|++|+.-
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            5554443    3445667776665544 567788999999999999999999999999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.3e-36  Score=262.57  Aligned_cols=294  Identities=10%  Similarity=0.060  Sum_probs=210.3

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEe
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHA  133 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw  133 (458)
                      ..+.+|.+.|++++|+|||++||+|+.++ +++|++++++.....   +...+..+++.+  +++.+ ++++.|+.|++|
T Consensus        13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLH--RTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECT--TSSEEEEECSSTTEEEEE
T ss_pred             cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcC--CCCEEEEEECCccEEEEE
Confidence            34678999999999999999999998775 789999887765543   223578888888  77776 567778999999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEEC
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      |+.+++.+..  +. +...|.+++++++.   ++++ .|+.|++||+.++ +.+..+..             +...++++
T Consensus        87 d~~~~~~~~~--~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~-------------~~~~~~~s  146 (355)
T 3vu4_A           87 DDVKKQDVSR--IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR-------------FGGVCEFS  146 (355)
T ss_dssp             ETTTTEEEEE--EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE-------------EEEEEEEE
T ss_pred             ECCCCcEEEE--EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc-------------CCceEEEE
Confidence            9998877665  33 66789999999864   3333 4789999999988 65555432             23455666


Q ss_pred             CCCCcEEEE--ecCCCeEEEEecCCCccCCCccCCCCCCCcCC-CccccccccceeEEEeCCCCcEEEEec-CCc-EEEE
Q 012712          213 PRNANLFAV--AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP-PNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYLF  287 (458)
Q Consensus       213 p~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~-i~i~  287 (458)
                      +   .+++.  |+.+|.|++||+++.+...............+ ......|...|.+++|+|+|++|++++ +++ |++|
T Consensus       147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             T---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             c---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            6   24444  68999999999987542111000000000111 345667899999999999999999998 557 9999


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-C-ccceeeeeEEEEecCCCcEEEEecCCC
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-G-HRNCVTVKGVNFFGPKCEYVVSGSDCG  365 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~s~~~~~l~~~~~dg  365 (458)
                      |+.+                                      ...+..+. + |...  |.+++| +|++++|++++.|+
T Consensus       224 d~~~--------------------------------------~~~~~~~~~g~h~~~--v~~~~~-s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          224 KTED--------------------------------------GVLVREFRRGLDRAD--VVDMKW-STDGSKLAVVSDKW  262 (355)
T ss_dssp             ETTT--------------------------------------CCEEEEEECTTCCSC--EEEEEE-CTTSCEEEEEETTC
T ss_pred             ECCC--------------------------------------CcEEEEEEcCCCCCc--EEEEEE-CCCCCEEEEEECCC
Confidence            9987                                      34556666 4 6664  999999 99999999999999


Q ss_pred             eEEEEEecCCeEE--EEee---------------------cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          366 RIFIWKKKGGELI--RVIE---------------------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       366 ~i~iwd~~~~~~~--~~~~---------------------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      +|++||+..+...  ..+.                     .+......++|++|+++|++++.||.+++|++..++
T Consensus       263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            9999999765311  1111                     112234678999999999999999999999987654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.5e-35  Score=266.39  Aligned_cols=287  Identities=11%  Similarity=0.073  Sum_probs=227.7

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee----ccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      ...+..+. .+.+++|+|++.++++++.++.|++||+.+++.....    ..+|...|.+++|+|  ++.++++++.|+.
T Consensus       116 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~  192 (433)
T 3bws_A          116 ISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANA  192 (433)
T ss_dssp             EEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTE
T ss_pred             EEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCE
Confidence            34455444 4569999998888888889999999999998876532    247889999999999  9999999999999


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      |++||+.+++....  +..|...+.+++|+|++..++++++.|+.|++||+++++....+.           ....+.++
T Consensus       193 v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~~~~~  259 (433)
T 3bws_A          193 VHVFDLKTLAYKAT--VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-----------KIGLPRGL  259 (433)
T ss_dssp             EEEEETTTCCEEEE--EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-----------CCSEEEEE
T ss_pred             EEEEECCCceEEEE--EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-----------CCCCceEE
Confidence            99999988776655  567888999999999996666777789999999999887665544           22358999


Q ss_pred             EECCCCCcEEEEec--------CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE-EEec
Q 012712          210 AIDPRNANLFAVAG--------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN  280 (458)
Q Consensus       210 ~~~p~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~  280 (458)
                      +|+|+ +.++++++        .|+.|++||+++++...                ...+...+.+++|+|+++.+ ++++
T Consensus       260 ~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~l~~~~~  322 (433)
T 3bws_A          260 LLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLID----------------TIGPPGNKRHIVSGNTENKIYVSDM  322 (433)
T ss_dssp             EECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE----------------EEEEEECEEEEEECSSTTEEEEEET
T ss_pred             EEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEe----------------eccCCCCcceEEECCCCCEEEEEec
Confidence            99998 56777777        58899999998765321                11234578899999999755 5545


Q ss_pred             -CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712          281 -DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV  359 (458)
Q Consensus       281 -~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~  359 (458)
                       ++.+++||+.++                                      .....+. +..  .+.+++| +|+|++|+
T Consensus       323 ~~~~v~v~d~~~~--------------------------------------~~~~~~~-~~~--~~~~~~~-s~dg~~l~  360 (433)
T 3bws_A          323 CCSKIEVYDLKEK--------------------------------------KVQKSIP-VFD--KPNTIAL-SPDGKYLY  360 (433)
T ss_dssp             TTTEEEEEETTTT--------------------------------------EEEEEEE-CSS--SEEEEEE-CTTSSEEE
T ss_pred             CCCEEEEEECCCC--------------------------------------cEEEEec-CCC--CCCeEEE-cCCCCEEE
Confidence             568999998763                                      2233333 222  3778998 99999988


Q ss_pred             EecC---------------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec-CCcEEEecCCc
Q 012712          360 SGSD---------------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI-ESDIKILTPNA  416 (458)
Q Consensus       360 ~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iw~~~~  416 (458)
                      +++.               ||.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            8776               579999999999999888864 46899999999999988775 99999999863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=6.6e-35  Score=265.33  Aligned_cols=322  Identities=14%  Similarity=0.088  Sum_probs=244.3

Q ss_pred             CCCceEEEE---EecCCCEEEEe--------------cCCCeEEEEECC--Cc--ceeeeeccCCCcceeEEEEccCCCC
Q 012712           60 HRGCVNTVS---FNTDGDILISG--------------SDDRRVILWDWK--TE--RVKLSFHSGHNDNVFQAKIMPFTDD  118 (458)
Q Consensus        60 h~~~v~~~~---~s~~~~~l~s~--------------~~d~~i~iwd~~--~~--~~~~~~~~~~~~~i~~~~~~~~~~~  118 (458)
                      ....+..++   |+|+++.++..              +.++.+.||.++  ++  +.+..+ . ....+.+++|+|  ++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~-~~~~~~~~~~s~--~~  134 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-K-TGFQPKSVRFID--NT  134 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-E-CSSCBCCCEESS--SS
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-c-CCCCceEEEEeC--CC
Confidence            445677778   88877665532              233323455443  34  333444 2 334567999999  99


Q ss_pred             eEEEEEcCCCcEEEeecccccceeee---eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712          119 RSIVTCAADGQVRHAQILERGGVETK---LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID  195 (458)
Q Consensus       119 ~~l~s~~~dg~i~vw~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  195 (458)
                      .++++++.++.|++||+.+++.....   .+.+|...+.+++|+|++ .++++++.|+.|++||+++++....+..    
T Consensus       135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~~~----  209 (433)
T 3bws_A          135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATVDL----  209 (433)
T ss_dssp             EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEEEC----
T ss_pred             eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEEcC----
Confidence            99999999999999999887765421   245788899999999988 7899999999999999999887766642    


Q ss_pred             CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712          196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL  275 (458)
Q Consensus       196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  275 (458)
                            +...+.+++|+|++..++++++.++.|++||+++++....               .. ....+.+++|+|++++
T Consensus       210 ------~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~---------------~~-~~~~~~~~~~~~~g~~  267 (433)
T 3bws_A          210 ------TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK---------------TD-KIGLPRGLLLSKDGKE  267 (433)
T ss_dssp             ------SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE---------------CC-CCSEEEEEEECTTSSE
T ss_pred             ------CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE---------------ec-CCCCceEEEEcCCCCE
Confidence                  3346899999998544446666899999999987753221               11 1345899999999998


Q ss_pred             EEEec---------CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeee
Q 012712          276 LVSYN---------DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK  346 (458)
Q Consensus       276 l~~~~---------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  346 (458)
                      +++++         ++.|++||+.++                                      +....+ .+..  .+.
T Consensus       268 l~~~~~~~~~~~~~dg~i~~~d~~~~--------------------------------------~~~~~~-~~~~--~~~  306 (433)
T 3bws_A          268 LYIAQFSASNQESGGGRLGIYSMDKE--------------------------------------KLIDTI-GPPG--NKR  306 (433)
T ss_dssp             EEEEEEESCTTCSCCEEEEEEETTTT--------------------------------------EEEEEE-EEEE--CEE
T ss_pred             EEEEECCCCccccCCCeEEEEECCCC--------------------------------------cEEeec-cCCC--Ccc
Confidence            88776         447999998763                                      122222 2222  367


Q ss_pred             EEEEecCCCcEE-EEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec---------------CCcEE
Q 012712          347 GVNFFGPKCEYV-VSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---------------ESDIK  410 (458)
Q Consensus       347 ~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------d~~i~  410 (458)
                      +++| +|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++.               ||.|+
T Consensus       307 ~~~~-~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~  384 (433)
T 3bws_A          307 HIVS-GNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY  384 (433)
T ss_dssp             EEEE-CSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred             eEEE-CCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEE
Confidence            8888 9999755 566899999999999999888886 6677999999999998888776               57999


Q ss_pred             EecCCcccccccccccccEEEEEEecCCcEEEeeec-CCceEEEEE
Q 012712          411 ILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNF-SCSILLFEW  455 (458)
Q Consensus       411 iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-d~~i~~w~~  455 (458)
                      +||+.+++..........+.+++|+|||++|++++. |+.|++|+.
T Consensus       385 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          385 VIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             EEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence            999999887765555667999999999999988764 999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.9e-35  Score=267.68  Aligned_cols=260  Identities=15%  Similarity=0.232  Sum_probs=208.0

Q ss_pred             cCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccc--------cceeeeeccccccceEEEEEcCCCCeEEEEecC
Q 012712          101 SGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILER--------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE  171 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  171 (458)
                      ..|.+.|++++|+|  + +.+|++++.+|.|++|++...        .......+.+|...+.+++|+|++..+|++++.
T Consensus       125 ~~h~~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          125 INHEGEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEESSCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EcCCCcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            57999999999999  7 679999999999999999762        122233477899999999999998558999999


Q ss_pred             CCeEEEEeCCCCCccce-eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC
Q 012712          172 DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY  250 (458)
Q Consensus       172 dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  250 (458)
                      ||.|++||++.+..... +....  ...+  +...|.+++|+|+++.+|++++.||.|++||+++....           
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~--~~~~--h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-----------  267 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKN--IFTG--HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-----------  267 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSE--EECC--CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----------
T ss_pred             CCeEEEEeCCCCCCCCceeccce--eecC--CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----------
Confidence            99999999988543211 11000  0011  45579999999966889999999999999999976311           


Q ss_pred             cCCCccccccccceeEEEeCCCCc-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712          251 FCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD  328 (458)
Q Consensus       251 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (458)
                       .+......|...|++++|+|++. ++++++ ++.|++||++..                                    
T Consensus       268 -~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~------------------------------------  310 (430)
T 2xyi_A          268 -KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL------------------------------------  310 (430)
T ss_dssp             -SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT------------------------------------
T ss_pred             -cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC------------------------------------
Confidence             11223446788999999999987 677777 568999999863                                    


Q ss_pred             cccCceeecCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEecC--------------CeEEEEeecCCceeeEEEe
Q 012712          329 VRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKG--------------GELIRVIEADRHVVNCIEP  393 (458)
Q Consensus       329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~  393 (458)
                       ...+..+.+|...  |.+++| +|+++ +|++++.||.|++||+..              .+++..+.+|...|++++|
T Consensus       311 -~~~~~~~~~h~~~--v~~i~~-sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          311 -KLKLHSFESHKDE--IFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             -TSCSEEEECCSSC--EEEEEE-CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             -CCCeEEeecCCCC--EEEEEE-CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence             2345677777774  899999 99985 689999999999999987              3677788899999999999


Q ss_pred             cCCCC-eEEEeecCCcEEEecCCccc
Q 012712          394 HPHST-VLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       394 s~~~~-~l~s~~~d~~i~iw~~~~~~  418 (458)
                      +|+++ +|++++.||.|+||++....
T Consensus       387 ~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          387 NPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             CCCCCCEEEEEECCCCEEEeEccccc
Confidence            99999 89999999999999998653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=292.65  Aligned_cols=257  Identities=16%  Similarity=0.280  Sum_probs=205.8

Q ss_pred             eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC--CcceeeeeccCCCcceeEEEEccCCC--CeEEEEEcCCCcE
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTD--DRSIVTCAADGQV  130 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~s~~~dg~i  130 (458)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++....+ .+|...|++++|+|  +  +++|++++.||.|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAH--PKFGTILASCSYDGKV   79 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECC--TTSCSEEEEEETTSCE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecC--CCCCCEEEEEeCCCeE
Confidence            4678999999999999999999999999999999997  44555555 78999999999998  6  9999999999999


Q ss_pred             EEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          131 RHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      ++||+.+++......+..|...|.+++|+|+  + .++++++.||.|++||++++..........        +...|.+
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~--------~~~~v~~  150 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDA--------HAIGVNS  150 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEEC--------CSSCEEE
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeec--------CCCceEE
Confidence            9999998764444557889999999999999  7 789999999999999999875443332211        4557999


Q ss_pred             EEECCC------------CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712          209 IAIDPR------------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL  276 (458)
Q Consensus       209 ~~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  276 (458)
                      ++|+|.            ++.++++|+.||.|++||+++....                                     
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------------------------------------  193 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------------  193 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-------------------------------------
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-------------------------------------
Confidence            999994            2567777777777777777653200                                     


Q ss_pred             EEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC--
Q 012712          277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK--  354 (458)
Q Consensus       277 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--  354 (458)
                                                                           ......+.+|...  |.+++| +|+  
T Consensus       194 -----------------------------------------------------~~~~~~~~~h~~~--V~~l~~-sp~~~  217 (753)
T 3jro_A          194 -----------------------------------------------------YVLESTLEGHSDW--VRDVAW-SPTVL  217 (753)
T ss_dssp             -----------------------------------------------------EEEEEEECCCSSC--EEEEEE-CCCCS
T ss_pred             -----------------------------------------------------ceeeeeecCCCCc--EEEEEe-ccCCC
Confidence                                                                 1122344556654  899998 999  


Q ss_pred             -CcEEEEecCCCeEEEEEecCCe-----EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          355 -CEYVVSGSDCGRIFIWKKKGGE-----LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       355 -~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                       +++|++++.||.|++||+.+++     .+.....|...|++++|+|++++|++++.||.|++|++..
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence             9999999999999999998864     2333455888999999999999999999999999999884

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.2e-36  Score=270.05  Aligned_cols=282  Identities=14%  Similarity=0.128  Sum_probs=219.8

Q ss_pred             ceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccce--eeeeccccccceEEEEEcC-CCCeEEEEecCCCeEEEEeCC
Q 012712          106 NVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLR  181 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~  181 (458)
                      ....++++|  +...++ +++.||.|++|++......  ....+.+|...|.+++|+| ++ .+|++++.||.|++||+.
T Consensus        36 ~~~~~~~~~--~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNP--KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECS--SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECC--CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEcc
Confidence            344578888  665444 5788999999999664322  1223678999999999999 66 789999999999999999


Q ss_pred             CCCc-------cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          182 TGAA-------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       182 ~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      ++..       ...+..          +...|.+++|+|++.++|++++.|+.|++||+++++...              
T Consensus       113 ~~~~~~~~~~~~~~~~~----------h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------  168 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEG----------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL--------------  168 (402)
T ss_dssp             TTCCSSCBCSCSEEEEC----------CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE--------------
T ss_pred             CCCCccccCCceEEecC----------CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE--------------
Confidence            8743       333321          455799999999855799999999999999999875321              


Q ss_pred             ccc-cccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712          255 NLI-GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA  332 (458)
Q Consensus       255 ~~~-~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (458)
                      .+. ..|...|.+++|+|++++|++++ ++.|++||+.++                                      ..
T Consensus       169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------------------------------------~~  210 (402)
T 2aq5_A          169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--------------------------------------TV  210 (402)
T ss_dssp             EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--------------------------------------EE
T ss_pred             EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC--------------------------------------ce
Confidence            111 45788999999999999999888 558999999873                                      34


Q ss_pred             ceee-cCccceeeeeEEEEecCCCcEEEEe---cCCCeEEEEEecCCeE-EEEee-cCCceeeEEEecCCCCeEEE-eec
Q 012712          333 PQVY-KGHRNCVTVKGVNFFGPKCEYVVSG---SDCGRIFIWKKKGGEL-IRVIE-ADRHVVNCIEPHPHSTVLAS-SGI  405 (458)
Q Consensus       333 ~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~s-~~~  405 (458)
                      ...+ .+|... .+.+++| +|++++|++|   +.|+.|++||+.+++. +.... .|...+.+++|+|++++|++ ++.
T Consensus       211 ~~~~~~~~~~~-~~~~~~~-~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~  288 (402)
T 2aq5_A          211 VAEKDRPHEGT-RPVHAVF-VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG  288 (402)
T ss_dssp             EEEEECSSCSS-SCCEEEE-CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred             eeeeccCCCCC-cceEEEE-cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence            4455 556543 3678888 9999999999   7999999999988654 33333 46778999999999999864 557


Q ss_pred             CCcEEEecCCcccc--ccccc--ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          406 ESDIKILTPNAADR--ATLPT--NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       406 d~~i~iw~~~~~~~--~~~~~--~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      |+.|++|++.+++.  ..+..  +...|.+++|+|++.++++  .++.+++|++-
T Consensus       289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred             CCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence            99999999998873  23333  4578999999999998875  56689999974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.3e-34  Score=257.08  Aligned_cols=305  Identities=11%  Similarity=0.122  Sum_probs=230.1

Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeeccccccc
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                      .++++++.|+.|++||+.+++.+..+ ..| ..+.+++|+|  +++.| ++++.|+.|++||+.+++....  +..+ ..
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~--~~~~-~~   75 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATI-PVG-SNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIAT--VPAG-SS   75 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE-ECS-SSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEE--EECS-SS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEe-ecC-CCcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEE--EECC-CC
Confidence            46888999999999999999887776 444 4589999999  99876 6777899999999988876654  3333 38


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      +.+++|+|+++.++++++.++.|++||+++++....+.           ....+.+++|+|++..++++++.++.|++||
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  144 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------TGKSPLGLALSPDGKKLYVTNNGDKTVSVIN  144 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------CSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            99999999996666777788999999999988766654           2235789999998433447888899999999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE-EEec-CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      +++++....               .. ....+..++|+|+++.+ +++. ++.|++||+.++                  
T Consensus       145 ~~~~~~~~~---------------~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------  190 (391)
T 1l0q_A          145 TVTKAVINT---------------VS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------  190 (391)
T ss_dssp             TTTTEEEEE---------------EE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------
T ss_pred             CCCCcEEEE---------------Ee-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------
Confidence            988763221               11 12456899999999877 4555 457999998763                  


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec---CCCeEEEEEecCCeEEEEeecCCce
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRIFIWKKKGGELIRVIEADRHV  387 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~  387 (458)
                                          .....+..+.   .+.+++| +|++++|++++   .++.|++||+.+++.+..+..|. .
T Consensus       191 --------------------~~~~~~~~~~---~~~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~  245 (391)
T 1l0q_A          191 --------------------SVIDTVKVEA---APSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-D  245 (391)
T ss_dssp             --------------------EEEEEEECSS---EEEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-S
T ss_pred             --------------------eEEEEEecCC---CccceEE-CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-C
Confidence                                2233333222   3788888 99999999887   68999999999999999888765 4


Q ss_pred             eeEEEecCCCCeE-EEeecCCcEEEecCCcccccc-cccccccE---------------EEEEEecCC----------cE
Q 012712          388 VNCIEPHPHSTVL-ASSGIESDIKILTPNAADRAT-LPTNIEQV---------------CFSIYSADY----------WW  440 (458)
Q Consensus       388 v~~~~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~~-~~~~~~~v---------------~~~~~s~d~----------~~  440 (458)
                      +.+++|+|++++| ++++.|+.|++||+.+++... +..+..+.               ....|+.+.          ..
T Consensus       246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~  325 (391)
T 1l0q_A          246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQ  325 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEE
T ss_pred             ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEE
Confidence            7899999999977 677889999999999876542 22222211               111233332          34


Q ss_pred             EEeeecCCceEEEEE
Q 012712          441 SKSQNFSCSILLFEW  455 (458)
Q Consensus       441 l~s~~~d~~i~~w~~  455 (458)
                      +...+.|..+++|++
T Consensus       326 ~~~~~~~~~~~~W~~  340 (391)
T 1l0q_A          326 FTDLSKDATEWKWDF  340 (391)
T ss_dssp             EEECCBSCSEEEEEC
T ss_pred             EEeCCCCceEEEEEC
Confidence            556677888999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-35  Score=266.27  Aligned_cols=310  Identities=10%  Similarity=0.076  Sum_probs=221.4

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcc---eeeeec-------------------------------------
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH-------------------------------------  100 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-------------------------------------  100 (458)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+.                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977766 56799999999888   444331                                     


Q ss_pred             ----------------cCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecc--cccceeeeeccccccceEEEEEcCC
Q 012712          101 ----------------SGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQIL--ERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus       101 ----------------~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                                      .+|...|.+++|+|  ++++| ++++.||.|++|++.  +++.........|...|.+++|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -----------------CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                            12344799999999  99996 899999999999998  6666554222356789999999999


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccc----eeeecccCCCCcceeecceEEEEECCC--CCcEEEEecCCCeEEEEecCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      + .+|++++.+|.|++|++.+++...    .+..          +...|.+++|+|+  ++.+|++++.|+.|++||+++
T Consensus       161 ~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          161 D-TTVIIADKFGDVYSIDINSIPEEKFTQEPILG----------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             S-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEE----------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             C-CEEEEEeCCCcEEEEecCCcccccccceeeec----------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            9 688999999999999998876543    2221          4457999999996  257999999999999999987


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      ++..              .....+|...|.+++|+ ++++|++++ ++.|++||+.++.....+......   ....+  
T Consensus       230 ~~~~--------------~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~~~~--  289 (450)
T 2vdu_B          230 CFIV--------------DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI---KPYLN--  289 (450)
T ss_dssp             TTCE--------------EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH---GGGCC--
T ss_pred             Ccee--------------eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh---hhhhh--
Confidence            6521              22345678899999999 999999998 558999999876432221100000   00000  


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEe--cCC---eEEEEeecCCcee
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGG---ELIRVIEADRHVV  388 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v  388 (458)
                             ....... .....  ........+.+++| +|++++|++++ .++.|++|++  .++   +.+..+..| +.|
T Consensus       290 -------~~~~~~~-~~~~~--~~~~~~~~v~~i~~-~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v  357 (450)
T 2vdu_B          290 -------DQHLAPP-RFQNE--NNDIIEFAVSKIIK-SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV  357 (450)
T ss_dssp             -------TTSBC-------------CBCCCEEEEEE-CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred             -------hcccccc-ccccc--ccccceEEEEEEEE-eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence                   0000000 00000  00011124788998 99999999988 8999999999  666   777888888 789


Q ss_pred             eEEEecCCCCeEEEeec------CCcEEEecCCc
Q 012712          389 NCIEPHPHSTVLASSGI------ESDIKILTPNA  416 (458)
Q Consensus       389 ~~~~~s~~~~~l~s~~~------d~~i~iw~~~~  416 (458)
                      .+++|+|++.++++++.      +..|.+|.+..
T Consensus       358 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          358 ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999996544444443      45688887653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=263.65  Aligned_cols=286  Identities=14%  Similarity=0.067  Sum_probs=222.1

Q ss_pred             cceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc---ceeeee------------------------------------
Q 012712          105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG---GVETKL------------------------------------  145 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~---~~~~~~------------------------------------  145 (458)
                      .++.+++|+|  +|++|+++ .++.|++||+.+++   .+....                                    
T Consensus         5 ~p~~~v~~s~--dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            5 HPLQNLLTSR--DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCCCEEEECS--SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             ccEEEEEecC--CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            5789999999  99966665 57899999998887   322211                                    


Q ss_pred             ----------------ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC--CCCccceeeecccCCCCcceeecceE
Q 012712          146 ----------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       146 ----------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                                      ...|...|.+++|+|++..++++++.||.|++||+.  +++....+...        .+...|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~~~v~  153 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------CFSKRPN  153 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------ECSSCEE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------cCCCCce
Confidence                            013444799999999995546899999999999999  77777666421        1445799


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC---CcEEEEec-CCc
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYN-DEF  283 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~-~~~  283 (458)
                      +++|+|+ +.+|++++.+|.|++|++.+.+....           .......|...|.+++|+|+   +++|++++ ++.
T Consensus       154 ~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~  221 (450)
T 2vdu_B          154 AISIAED-DTTVIIADKFGDVYSIDINSIPEEKF-----------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH  221 (450)
T ss_dssp             EEEECTT-SSEEEEEETTSEEEEEETTSCCCSSC-----------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC
T ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEecCCcccccc-----------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc
Confidence            9999998 68999999999999999987653210           12234557889999999999   99999988 458


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee-ecCccceeeeeEEEEecCCCcEEEEec
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV-YKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      |++||+.++                                      ..... +.+|...  |.+++| + ++++|++++
T Consensus       222 i~vwd~~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-s-d~~~l~s~~  259 (450)
T 2vdu_B          222 IKISHYPQC--------------------------------------FIVDKWLFGHKHF--VSSICC-G-KDYLLLSAG  259 (450)
T ss_dssp             EEEEEESCT--------------------------------------TCEEEECCCCSSC--EEEEEE-C-STTEEEEEE
T ss_pred             EEEEECCCC--------------------------------------ceeeeeecCCCCc--eEEEEE-C-CCCEEEEEe
Confidence            999999863                                      23344 4567764  899999 8 999999999


Q ss_pred             CCCeEEEEEecCCeEEEEeecC-------------------------CceeeEEEecCCCCeEEEee-cCCcEEEecC--
Q 012712          363 DCGRIFIWKKKGGELIRVIEAD-------------------------RHVVNCIEPHPHSTVLASSG-IESDIKILTP--  414 (458)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~--  414 (458)
                      .|+.|++||+.+++++..+..+                         ...|.+++|+|++++|++++ .|+.|++|++  
T Consensus       260 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~  339 (450)
T 2vdu_B          260 GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE  339 (450)
T ss_dssp             SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred             CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence            9999999999999988887632                         34689999999999999998 8999999999  


Q ss_pred             Ccc---ccc-ccccccccEEEEEEecCCcEEEeeec------CCceEEEEEe
Q 012712          415 NAA---DRA-TLPTNIEQVCFSIYSADYWWSKSQNF------SCSILLFEWL  456 (458)
Q Consensus       415 ~~~---~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~------d~~i~~w~~~  456 (458)
                      ..+   +.. .+..+ ..+.+++|+|++.+++.++.      +..|.+|.+-
T Consensus       340 ~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          340 KQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             SSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             CCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            444   333 34444 78999999997666665554      4568999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=260.89  Aligned_cols=274  Identities=11%  Similarity=0.068  Sum_probs=208.4

Q ss_pred             EEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc---------c
Q 012712           68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE---------R  138 (458)
Q Consensus        68 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~---------~  138 (458)
                      .+.+++.+|++|+.||.|++||+.+++.+..+.   ...|.++.|+|  +   +++++.|+.|++|+...         +
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP--A---IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC--S---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC--c---eEEecCCCeEEEEEccCceEEeecCCc
Confidence            345678899999999999999999998877763   56788889998  6   99999999999997653         2


Q ss_pred             cceeeeeccccccceEEEEEcC--CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          139 GGVETKLLGKHQGRAHKLAIEP--GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      +.+.. ....|...|.+++|+|  ++ .++++++.||.|++||+++++........         +...+.+++|+|+ +
T Consensus       115 ~~~~~-~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------~~~~i~~~~~~pd-g  182 (343)
T 3lrv_A          115 KVLRE-IEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAK---------SDVEYSSGVLHKD-S  182 (343)
T ss_dssp             CEEEE-EECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCC---------SSCCCCEEEECTT-S
T ss_pred             ceeEE-eecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecC---------CCCceEEEEECCC-C
Confidence            22222 1235668899999999  88 78999999999999999998875443211         3335899999998 7


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc-ccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP  295 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~  295 (458)
                      .+|++|+.||.|++||+++++..              ..... .|...|.+++|+|++.+|++++++.|++||+++....
T Consensus       183 ~~lasg~~dg~i~iwd~~~~~~~--------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          183 LLLALYSPDGILDVYNLSSPDQA--------------SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGT  248 (343)
T ss_dssp             CEEEEECTTSCEEEEESSCTTSC--------------CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTC
T ss_pred             CEEEEEcCCCEEEEEECCCCCCC--------------ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcc
Confidence            89999999999999999987632              11223 3788999999999999999999889999999875332


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEecC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG  374 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~  374 (458)
                      ..                                   ...+..|.....-.+++| +|+|++|++++. |+.+++|++..
T Consensus       249 ~~-----------------------------------~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          249 LA-----------------------------------YPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             BS-----------------------------------SCCCBC-----CCEEEEE-CTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ee-----------------------------------ecccccccccccceEEEE-CCCCCEEEEecCCCCcEEEEEEcc
Confidence            11                                   111222222211136888 999999999888 99999999976


Q ss_pred             CeEEEEeecCCceeeEEEecC---CCCeEEEeecCCcEEEecCC
Q 012712          375 GELIRVIEADRHVVNCIEPHP---HSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       375 ~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~d~~i~iw~~~  415 (458)
                      .......    .++..++|+|   +.+.+++++.|+.+.++-..
T Consensus       293 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          293 KTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             TTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             cccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            5443333    5688899998   88999999999999987543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.6e-36  Score=271.04  Aligned_cols=280  Identities=11%  Similarity=0.020  Sum_probs=188.3

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--------CCCE
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--------DGDI   75 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------~~~~   75 (458)
                      .++++++.+|++|+.|++|+|||.++++...                ......+.||.+.|++++|+|        |+++
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~----------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~  158 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIIT----------------QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV  158 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEE----------------EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccce----------------eeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence            4578888899999999999999999876552                234456789999999999998        8899


Q ss_pred             EEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccceeeeecccccc---
Q 012712           76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQG---  151 (458)
Q Consensus        76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---  151 (458)
                      ||+|+.|++|+|||+.++..+..+ ..|...+.+++|+|  ++ .+|++++.||.|++||+.+++....  ...+..   
T Consensus       159 las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p--~~~~~l~~~~~d~~v~~wd~~t~~~~~~--~~~~~~~~~  233 (393)
T 4gq1_A          159 IASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRP--SNPNQLIVGERNGNIRIFDWTLNLSAEE--NSQTELVKN  233 (393)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEET--TEEEEEEEEETTSEEEEEETTCCC------------CSC
T ss_pred             EEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECC--CCCceEEecCCCCEEEEEECCCCccccc--ccccCCccc
Confidence            999999999999999888776666 57889999999999  77 4799999999999999988765443  221111   


Q ss_pred             -ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          152 -RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       152 -~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                       .+......+..             ....         .        .+  +...+.++.|++.++..+++++.|+.+++
T Consensus       234 ~~~~s~~~~~~~-------------~~~~---------~--------~~--~~~~v~~v~~~~~dg~~l~s~s~d~~i~v  281 (393)
T 4gq1_A          234 PWLLTLNTLPLV-------------NTCH---------S--------SG--IASSLANVRWIGSDGSGILAMCKSGAWLR  281 (393)
T ss_dssp             CCSEEEESGGGC------------------------------------C--CSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred             ceEEecccccce-------------eeee---------c--------cc--ccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence             11111111111             0000         0        00  33357788887333789999999999999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      ||+...+...               ....+...+..+.+.|+.+.+.                                 
T Consensus       282 wd~~~~~~~~---------------~l~~~~~~~~~~~~~~~~~~~~---------------------------------  313 (393)
T 4gq1_A          282 WNLFANNDYN---------------EISDSTMKLGPKNLLPNVQGIS---------------------------------  313 (393)
T ss_dssp             EEC----------------------------------CCSCSEEEEC---------------------------------
T ss_pred             EECccCCCCc---------------eEeeecCccccEEEcccccccc---------------------------------
Confidence            9998765321               1223344555555555543211                                 


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe-cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF-GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN  389 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  389 (458)
                                                 .+..   .....++ .+++.++++|+.||+|++||+.+++.+..+..|..+|.
T Consensus       314 ---------------------------~~~~---~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~  363 (393)
T 4gq1_A          314 ---------------------------LFPS---LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV  363 (393)
T ss_dssp             ---------------------------SSCC---SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE
T ss_pred             ---------------------------ccCc---ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE
Confidence                                       1111   1112221 23556778899999999999999999888888999999


Q ss_pred             EEEecCCCCeEEEeecCCcEEEecCC
Q 012712          390 CIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       390 ~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      +++|+|||++||+++.+| +.+|++.
T Consensus       364 svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          364 DFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            999999999999998766 5555543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.3e-34  Score=262.13  Aligned_cols=255  Identities=14%  Similarity=0.156  Sum_probs=203.5

Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC----------CCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT----------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      ...|.+.|++++|+|+++.+|++++.||.|++||+..          ......+..          +...+.+++|+|++
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~~~~  193 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG----------HQKEGYGLSWNPNL  193 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC----------CSSCCCCEEECTTS
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC----------CCCCeEEEEeCCCC
Confidence            5579999999999998558999999999999999976          222222221          45578999999985


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGL  293 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~  293 (458)
                      ..+|++|+.||.|++||+........        ...+......|...|.+++|+| ++.+|++++ ++.|++||+++..
T Consensus       194 ~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~  265 (430)
T 2xyi_A          194 NGYLLSASDDHTICLWDINATPKEHR--------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN  265 (430)
T ss_dssp             TTEEEEECTTSCEEEEETTSCCBGGG--------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCc--------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            44999999999999999987432110        0011233446788999999999 677888877 5689999998642


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEe
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKK  372 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~  372 (458)
                      .                                   ......+..|...  +.+++| +|+++ +|++|+.||.|++||+
T Consensus       266 ~-----------------------------------~~~~~~~~~~~~~--v~~i~~-~p~~~~~l~tg~~dg~v~vwd~  307 (430)
T 2xyi_A          266 T-----------------------------------SKPSHTVDAHTAE--VNCLSF-NPYSEFILATGSADKTVALWDL  307 (430)
T ss_dssp             S-----------------------------------SSCSEEEECCSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEET
T ss_pred             C-----------------------------------CcceeEeecCCCC--eEEEEe-CCCCCCEEEEEeCCCeEEEEeC
Confidence            1                                   1344556677764  899999 99987 6889999999999999


Q ss_pred             cC-CeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCcc---------------cccccccccccEEEEEEe
Q 012712          373 KG-GELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA---------------DRATLPTNIEQVCFSIYS  435 (458)
Q Consensus       373 ~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~---------------~~~~~~~~~~~v~~~~~s  435 (458)
                      .+ .+++..+..|...|.+++|+|+++ +|++++.|+.|+||++...               ......+|...|.+++|+
T Consensus       308 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  387 (430)
T 2xyi_A          308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  387 (430)
T ss_dssp             TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred             CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence            87 567889999999999999999996 6899999999999999872               223456778889999999


Q ss_pred             cCCc-EEEeeecCCceEEEEEe
Q 012712          436 ADYW-WSKSQNFSCSILLFEWL  456 (458)
Q Consensus       436 ~d~~-~l~s~~~d~~i~~w~~~  456 (458)
                      |++. +|++++.||.|+||+.-
T Consensus       388 p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          388 PNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             SSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCCCCEEEEEECCCCEEEeEcc
Confidence            9998 89999999999999963

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=1e-33  Score=261.39  Aligned_cols=324  Identities=11%  Similarity=0.081  Sum_probs=245.8

Q ss_pred             EEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec--ccccceeeee
Q 012712           68 SFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI--LERGGVETKL  145 (458)
Q Consensus        68 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~--~~~~~~~~~~  145 (458)
                      .|+|++.++++++.|++|.+||..+++.+..+..++.  +..++|+|  ++++|++++.|+.|++||+  .+++.+..  
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~--  217 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAE--  217 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEE--
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEE--
Confidence            3889999999999999999999999999888744554  88999999  9999999999999999999  66655544  


Q ss_pred             ccccccceEEEEEcC----CCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCC-cceeecceEEEEECCCCCcEE
Q 012712          146 LGKHQGRAHKLAIEP----GSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRR-NYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~----~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      +. +...+..++|+|    +++ ++++++ .++.|.+||..+++++..+......... .......+.++.++|+++.++
T Consensus       218 i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          218 IK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             EE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             Ee-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            44 345679999999    994 556655 5899999999999888777542210000 000122588999999877888


Q ss_pred             EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCC
Q 012712          220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNP  297 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~  297 (458)
                      ++...++.|.+||..+.+....             ... .+...+..++|+|+|+++++++  +++|.+||..++     
T Consensus       296 vs~~~~g~i~vvd~~~~~~l~~-------------~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-----  356 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNLTV-------------TSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-----  356 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSCEE-------------EEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-----
T ss_pred             EEECCCCeEEEEEecCCCccee-------------EEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-----
Confidence            8899999999999987642110             011 1244677899999999766554  568999999874     


Q ss_pred             CCCCCccccccccccCCCCccccCCCCCCcccccCceeecC----ccceeeeeEEEEecCC-CcEEEEec-CCCeEEEEE
Q 012712          298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG----HRNCVTVKGVNFFGPK-CEYVVSGS-DCGRIFIWK  371 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~s~~-~~~l~~~~-~dg~i~iwd  371 (458)
                                                       +....+..    |...    ...|++|+ +.+++++. .|++|.+||
T Consensus       357 ---------------------------------~l~~~i~~g~~ph~g~----g~~~~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          357 ---------------------------------RLSALVDVGKTPHPGR----GANFVHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             ---------------------------------EEEEEEECSSSBCCTT----CEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             ---------------------------------eEEEeeccCCCCCCCC----CcccCCCCCccEEEeccCCCceEEEEE
Confidence                                             23333332    3221    12223677 66666665 589999999


Q ss_pred             ecC-------CeEEEEeecCCceeeEEEecCCCCeEEEee-------cCCcEEEecCCccccc-cc---------ccccc
Q 012712          372 KKG-------GELIRVIEADRHVVNCIEPHPHSTVLASSG-------IESDIKILTPNAADRA-TL---------PTNIE  427 (458)
Q Consensus       372 ~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~d~~i~iw~~~~~~~~-~~---------~~~~~  427 (458)
                      +.+       ++.++++.+|.+.+..++++|++++|++++       .+++|.+||+.+++.. ..         ..+..
T Consensus       400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~  479 (543)
T 1nir_A          400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK  479 (543)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred             eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC
Confidence            988       899999999988899999999999999987       3789999999988765 32         35567


Q ss_pred             cEEEEEEecCCcEEEeee-----cCCceEEEEE
Q 012712          428 QVCFSIYSADYWWSKSQN-----FSCSILLFEW  455 (458)
Q Consensus       428 ~v~~~~~s~d~~~l~s~~-----~d~~i~~w~~  455 (458)
                      .+..+.|+|||++|..+.     .|+.|.|||-
T Consensus       480 ~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          480 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             EEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             ceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            799999999998887653     4799999983

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=284.10  Aligned_cols=264  Identities=16%  Similarity=0.178  Sum_probs=210.0

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC--CCeEEEEecCCCeEEE
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG--SPHVFYTCGEDGLVQH  177 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~i  177 (458)
                      +.+|.+.|++++|+|  ++++|++++.||.|++|++..+.......+.+|...|.+++|+|+  + .+|++++.||.|++
T Consensus         5 l~gH~~~V~~l~~s~--dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            5 ANAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLI   81 (753)
T ss_dssp             ---CCCCEEEECCCS--SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEE
T ss_pred             cccCcceeEEEEECC--CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEE
Confidence            478999999999999  999999999999999999985544444558899999999999987  6 78999999999999


Q ss_pred             EeCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712          178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL  256 (458)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  256 (458)
                      ||+++++........      +  +...|.+++|+|++ +.++++|+.||.|++||+++....             ....
T Consensus        82 wd~~~~~~~~~~~~~------~--h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~-------------~~~~  140 (753)
T 3jro_A           82 WKEENGRWSQIAVHA------V--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-------------SPII  140 (753)
T ss_dssp             EEEETTEEEEEEEEC------C--CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-------------CCEE
T ss_pred             EECCCCccccccccc------C--CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-------------ceeE
Confidence            999987632222211      1  45579999999973 579999999999999999876421             1223


Q ss_pred             ccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          257 IGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       257 ~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                      ...|...|.+++|+|.....                                                            
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~------------------------------------------------------------  160 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEE------------------------------------------------------------  160 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------------------------------------------------------------
T ss_pred             eecCCCceEEEEecCccccc------------------------------------------------------------
Confidence            34456677777777753100                                                            


Q ss_pred             cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC----eEEEEeecCCceeeEEEecCC---CCeEEEeecCCcE
Q 012712          337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPH---STVLASSGIESDI  409 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~i  409 (458)
                              ..... ..++++++++|+.||.|++||+.++    .....+.+|...|++++|+|+   +++|++++.||.|
T Consensus       161 --------~~~~~-~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          161 --------DGEHN-GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             ---------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             --------ccccc-cCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence                    00001 1567899999999999999999877    566788899999999999999   8999999999999


Q ss_pred             EEecCCccc------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          410 KILTPNAAD------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       410 ~iw~~~~~~------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      ++||+.+++      ......|...|++++|+|+|.++++++.||.|++|++-
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            999998863      23445678889999999999999999999999999964

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-35  Score=255.31  Aligned_cols=262  Identities=8%  Similarity=0.012  Sum_probs=199.2

Q ss_pred             CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC---------CCccc
Q 012712          117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---------GAATE  187 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~  187 (458)
                      ++.+|++|+.||.|++||+.+++.+...  .  ...|.++.++|+    +++++.|+.|++|+...         ++...
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~--~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTI--T--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEE--E--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEE--e--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            8899999999999999999988876553  2  467888888886    89999999999997763         22222


Q ss_pred             eeeecccCCCCcceeecceEEEEECC--CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccccee
Q 012712          188 LFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGIT  265 (458)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  265 (458)
                      .+..         .+...|.+++|+|  + +.++++++.||.|++||+++++..              ......+...+.
T Consensus       119 ~~~~---------~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~--------------~~~~~~~~~~i~  174 (343)
T 3lrv_A          119 EIEV---------DSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQY--------------IVHSAKSDVEYS  174 (343)
T ss_dssp             EEEC---------CCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEE--------------EEECCCSSCCCC
T ss_pred             Eeec---------CCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEE--------------EEEecCCCCceE
Confidence            2211         1335799999999  8 689999999999999999987531              111233455799


Q ss_pred             EEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc-eeecC-ccce
Q 012712          266 GLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP-QVYKG-HRNC  342 (458)
Q Consensus       266 ~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~  342 (458)
                      +++|+|++.+|++++ ++.|++||++++                                      ... ..+.. |...
T Consensus       175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~--------------------------------------~~~~~~~~~~h~~~  216 (343)
T 3lrv_A          175 SGVLHKDSLLLALYSPDGILDVYNLSSP--------------------------------------DQASSRFPVDEEAK  216 (343)
T ss_dssp             EEEECTTSCEEEEECTTSCEEEEESSCT--------------------------------------TSCCEECCCCTTSC
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCC--------------------------------------CCCccEEeccCCCC
Confidence            999999999999987 568999999874                                      223 45565 7764


Q ss_pred             eeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec---CCceee--EEEecCCCCeEEEeec-CCcEEEecCCc
Q 012712          343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA---DRHVVN--CIEPHPHSTVLASSGI-ESDIKILTPNA  416 (458)
Q Consensus       343 ~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~s~~~~~l~s~~~-d~~i~iw~~~~  416 (458)
                        |.+++| +|++++|++++ ++.|++||+.+++.+..+..   |...+.  +++|+|++++|++++. |+.|++|++..
T Consensus       217 --v~~l~f-s~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          217 --IKEVKF-ADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             --EEEEEE-CTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             --EEEEEE-eCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence              999999 99999999999 55999999998876655443   444444  5999999999999988 99999999876


Q ss_pred             ccccccccccccEEEEEEec---CCcEEEeeecCCceEEEEE
Q 012712          417 ADRATLPTNIEQVCFSIYSA---DYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       417 ~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~~d~~i~~w~~  455 (458)
                      .......   .++..++|+|   ++..+++++.|+.+.++-.
T Consensus       293 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          293 KTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             TTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             cccceEe---cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            5432111   5677888998   8889999999999888743

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=3.4e-33  Score=279.74  Aligned_cols=361  Identities=11%  Similarity=0.046  Sum_probs=266.0

Q ss_pred             CCCCCCCCCeEEEeeCC------CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCce-------EEEEE
Q 012712            3 DASNNNNNKRARTSVDK------ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCV-------NTVSF   69 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d------~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~   69 (458)
                      .+.|||||++||.++.+      ..|++||+.+|+.                      +.+..|...+       .+++|
T Consensus        57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~----------------------~~lt~~~~~~~~~~~~~~~~~~  114 (1045)
T 1k32_A           57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI----------------------KRITYFSGKSTGRRMFTDVAGF  114 (1045)
T ss_dssp             EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE----------------------EECCCCCEEEETTEECSEEEEE
T ss_pred             CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe----------------------EEcccCCCcccccccccccccC
Confidence            35689999999988643      3799999987652                      2467788888       99999


Q ss_pred             ecCCCEEEEecCC------CeEEEEECCCcceeee---------------------------------------------
Q 012712           70 NTDGDILISGSDD------RRVILWDWKTERVKLS---------------------------------------------   98 (458)
Q Consensus        70 s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~---------------------------------------------   98 (458)
                      +|||+++++++.+      ..|.+|++.+++....                                             
T Consensus       115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~  194 (1045)
T 1k32_A          115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG  194 (1045)
T ss_dssp             CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred             CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence            9999977777754      4688888765543210                                             


Q ss_pred             ---eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCe
Q 012712           99 ---FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL  174 (458)
Q Consensus        99 ---~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  174 (458)
                         .+.+|...+.++.|++  + .++++++.++.+++|.+.... ....  +..|. .+...+|+|+|. .++.+ .++.
T Consensus       195 ~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~--l~~~~-~~~~~~~SpDG~-~la~~-~~~~  266 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRK--HTSFT-DYYPRHLNTDGR-RILFS-KGGS  266 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEE--CCCCC-SSCEEEEEESSS-CEEEE-ETTE
T ss_pred             CeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceE--ecCCC-CcceeeEcCCCC-EEEEE-eCCE
Confidence               0135667788889988  7 677788888999999876422 2222  44444 466789999994 45555 5899


Q ss_pred             EEEEeCCCCCccceeeecccC-CCCcceeecceEEEEEC-CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcC
Q 012712          175 VQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIAID-PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC  252 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  252 (458)
                      |++||+..... ..+...... ......+...+.+++|+ |+ +..+++++ ++.|++|++..++..             
T Consensus       267 i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~-------------  330 (1045)
T 1k32_A          267 IYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVL-------------  330 (1045)
T ss_dssp             EEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEE-------------
T ss_pred             EEEecCCceEe-eeeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceE-------------
Confidence            99999944332 222211000 00000123358899999 98 67787776 789999998765421             


Q ss_pred             CCcccccccc-ceeEEEeCCCCcEEEEecCC-cEE-EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712          253 PPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIY-LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV  329 (458)
Q Consensus       253 ~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~-~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (458)
                         ....+.. .+..++|+ +|+.|+.++++ .+. +|++..+                                     
T Consensus       331 ---~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-------------------------------------  369 (1045)
T 1k32_A          331 ---KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-------------------------------------  369 (1045)
T ss_dssp             ---ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-------------------------------------
T ss_pred             ---EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-------------------------------------
Confidence               1222344 78999999 99998888764 577 8887653                                     


Q ss_pred             ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC--
Q 012712          330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES--  407 (458)
Q Consensus       330 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--  407 (458)
                        ....+.+|..  .+..++| +|||++|++++.++.|++||+.+++....+.+|...+.+++|+|||++|++++.++  
T Consensus       370 --~~~~l~~~~~--~~~~~~~-SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~  444 (1045)
T 1k32_A          370 --KAEKFEENLG--NVFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG  444 (1045)
T ss_dssp             --CEEECCCCCC--SEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             --CceEecCCcc--ceeeeEE-CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence              1222334433  3788998 99999999999999999999999998888878999999999999999999887654  


Q ss_pred             --------cEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          408 --------DIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       408 --------~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                              .|++||+.+++...+..|...+..++|+|||++|++++.++...+|+.
T Consensus       445 ~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             cccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence                    899999999887788888888999999999999999998888777763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=9.5e-33  Score=254.95  Aligned_cols=339  Identities=13%  Similarity=0.057  Sum_probs=252.5

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEEEEecCCC
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDR   83 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~   83 (458)
                      .++|++.++++++.|++|.+||..+++++.                     ++. +|.  +.+++|+|||++|++++.|+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---------------------~i~~g~~--~~~v~~spdg~~l~v~~~d~  200 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---------------------VIDTGYA--VHISRMSASGRYLLVIGRDA  200 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---------------------EEECSTT--EEEEEECTTSCEEEEEETTS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEE---------------------EEecCcc--cceEEECCCCCEEEEECCCC
Confidence            367888899999999999999999988763                     355 343  88999999999999999999


Q ss_pred             eEEEEEC--CCcceeeeeccCCCcceeEEEEccC--CCCeEEEEEcC-CCcEEEeecccccceeeeeccc--------cc
Q 012712           84 RVILWDW--KTERVKLSFHSGHNDNVFQAKIMPF--TDDRSIVTCAA-DGQVRHAQILERGGVETKLLGK--------HQ  150 (458)
Q Consensus        84 ~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~--------~~  150 (458)
                      .|.+||+  .+++.+..+.  +...+..++|+|.  .++++|++++. +++|.+||..+.+.+......+        |.
T Consensus       201 ~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~  278 (543)
T 1nir_A          201 RIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP  278 (543)
T ss_dssp             EEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred             eEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence            9999999  7888877773  4567899999972  16788888874 8999999998887766533221        22


Q ss_pred             c-ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE-EEecCCCeE
Q 012712          151 G-RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYT  228 (458)
Q Consensus       151 ~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i  228 (458)
                      . .+..+.++|+++.++++...++.|.+||+.+.+........         ....+..++|+|+ ++++ +++..+++|
T Consensus       279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---------~~~~~~~~~~spd-g~~l~va~~~~~~v  348 (543)
T 1nir_A          279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---------AAPFLHDGGWDSS-HRYFMTAANNSNKV  348 (543)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---------CCSSCCCEEECTT-SCEEEEEEGGGTEE
T ss_pred             CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---------cCcCccCceECCC-CCEEEEEecCCCeE
Confidence            3 68899999998888889999999999999887654422211         1224678999998 4554 455678999


Q ss_pred             EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEec--CCcEEEEEccCCCCCCCCCCCCccc
Q 012712          229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      .+||..++++......+           ...|.+....+ ++|+ +.+++++.  +++|.+|++.+.....         
T Consensus       349 ~v~D~~tg~l~~~i~~g-----------~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~---------  407 (543)
T 1nir_A          349 AVIDSKDRRLSALVDVG-----------KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---------  407 (543)
T ss_dssp             EEEETTTTEEEEEEECS-----------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT---------
T ss_pred             EEEECCCCeEEEeeccC-----------CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch---------
Confidence            99999998754332110           01133223333 4676 67777764  5689999998632110         


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-------CCCeEEEEEecCCeEE
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-------DCGRIFIWKKKGGELI  378 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~  378 (458)
                                            ...+.++.+.+|...  +..+++ +|++++|++++       .+++|.+||+.+++..
T Consensus       408 ----------------------~~~~~v~~l~~~g~~--~~~v~~-~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          408 ----------------------YAWKKVAELQGQGGG--SLFIKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             ----------------------TBTSEEEEEECSCSC--CCCEEC-CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             ----------------------hcCeEEEEEEcCCCC--ceEEEc-CCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence                                  013456777777654  567887 99999999987       2679999999998877


Q ss_pred             -EEe--------ecCCceeeEEEecCCCCeEEEee-----cCCcEEEecCCccccccccc
Q 012712          379 -RVI--------EADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRATLPT  424 (458)
Q Consensus       379 -~~~--------~~~~~~v~~~~~s~~~~~l~s~~-----~d~~i~iw~~~~~~~~~~~~  424 (458)
                       ..+        ..+...+..++|+|+|+.|+++.     .|+.|.|||..++++.....
T Consensus       463 ~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          463 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence             554        34567899999999999888652     47999999999998765443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=6.4e-33  Score=231.87  Aligned_cols=291  Identities=14%  Similarity=0.090  Sum_probs=200.5

Q ss_pred             EeeeeeEeecCCC----ceEEEEEecCCC---EEEEecCCCeEEEEECCCc---ceeeeeccCCCcceeEEEEccCCCCe
Q 012712           50 RLGIYAKLDKHRG----CVNTVSFNTDGD---ILISGSDDRRVILWDWKTE---RVKLSFHSGHNDNVFQAKIMPFTDDR  119 (458)
Q Consensus        50 ~~~~~~~~~~h~~----~v~~~~~s~~~~---~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~  119 (458)
                      .++++..|+.-.+    .+.++.|-..|.   .+++++. ..|++|+..++   +.+.+. ..|..+|..+.+.|  |..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~   99 (356)
T 2w18_A           24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVP--DVY   99 (356)
T ss_dssp             CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCT--TCC
T ss_pred             eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-eccCceeEEEEEcC--ccc
Confidence            4566677775544    355666655443   5677776 68999999988   677776 78999999999999  654


Q ss_pred             EEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC----CCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712          120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG----SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID  195 (458)
Q Consensus       120 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  195 (458)
                      -|+...-                   -.-+...|++++++|+    + +.+++++.+  +.+|++.+             
T Consensus       100 ~~~~~~~-------------------~~~~~~~v~sla~spd~~~~~-~~l~s~g~~--~~v~~l~~-------------  144 (356)
T 2w18_A          100 NLVCVAL-------------------GNLEIREIRALFCSSDDESEK-QVLLKSGNI--KAVLGLTK-------------  144 (356)
T ss_dssp             SCEEEEE-------------------CSSSEEEEEEECC------CC-EEEEEEEEE--EEEEEETT-------------
T ss_pred             ceeeeee-------------------ccccccceEEEEECCCccccc-cEEEeCCCe--EEEEecCC-------------
Confidence            3332211                   1124567899999999    7 677877743  66675432             


Q ss_pred             CCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCC-
Q 012712          196 DRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-  271 (458)
Q Consensus       196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  271 (458)
                                          ++++.+++  .|+.|++|++.. ++.               ......|...+..++|+| 
T Consensus       145 --------------------g~lv~ss~~g~d~~V~~~~~s~dG~~---------------~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          145 --------------------RRLVSSSGTLSDQQVEVMTFAEDGGG---------------KENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             --------------------TEEEEEESSSTTCEEEEEEECTTSCE---------------EEEEEECCCSSCEEEEEEE
T ss_pred             --------------------CcEEEecccCCCCcEEEEEECCCCce---------------eeeeccCCCceeeEEeecc
Confidence                                33444422  467777777743 321               112224566788888988 


Q ss_pred             --CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc-eeeeeE
Q 012712          272 --QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-CVTVKG  347 (458)
Q Consensus       272 --~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~  347 (458)
                        ++.+|++++ |++|++||+.+                                      ++.++.+.+|.. ...+.+
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~T--------------------------------------Gk~l~tL~g~~~~v~~v~~  231 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKT--------------------------------------GQLLKKMHIDDSYQASVCH  231 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTT--------------------------------------CCEEEEEECCC---CCCEE
T ss_pred             CCCCceEEEecCCCcEEEEECCC--------------------------------------CcEEEEEcCCCcceeeeEE
Confidence              779999988 55899999988                                      445666665442 223667


Q ss_pred             EEEecCCCcEE------------EEecCCCeEEEEEecCCeEEEEe-----ecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712          348 VNFFGPKCEYV------------VSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEPHPHSTVLASSGIESDIK  410 (458)
Q Consensus       348 ~~~~s~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  410 (458)
                      ++| +|+|+++            ++|+.|++|++||..+++.+..+     .+|...+.+..+  ++.++|+++.|++|+
T Consensus       232 vaf-SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIk  308 (356)
T 2w18_A          232 KAY-SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIA  308 (356)
T ss_dssp             EEE-EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEE
T ss_pred             EEE-CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEE
Confidence            788 9999987            56888999999999999988766     366655444444  478999999999999


Q ss_pred             EecCCccccc-ccccccccEE-EEEEecCCcEEEeeecCCceEEEEE
Q 012712          411 ILTPNAADRA-TLPTNIEQVC-FSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       411 iw~~~~~~~~-~~~~~~~~v~-~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      |||+.++++. .+.+|...+. .++|||||++|++|+.|++|+|||+
T Consensus       309 IWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          309 IWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999876 5566777655 6899999999999999999999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3.6e-33  Score=233.38  Aligned_cols=279  Identities=13%  Similarity=0.050  Sum_probs=171.8

Q ss_pred             EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe--cCCCeEEEEEC
Q 012712           13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG--SDDRRVILWDW   90 (458)
Q Consensus        13 l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--~~d~~i~iwd~   90 (458)
                      +++++ ...|++|+..++.                  .++.++++.+|+.+|..+.+.||-.-|++.  +.=..-.++.+
T Consensus        57 ~~~~~-~~~v~lw~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sl  117 (356)
T 2w18_A           57 IITAC-EDVVSLWKALDAW------------------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRAL  117 (356)
T ss_dssp             EEEEE-SSEEEEEEESSSS------------------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEE
T ss_pred             EEEec-cceEEEcccCCCc------------------cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEE
Confidence            67777 6689999999762                  234456677777777777777754322211  11000111111


Q ss_pred             --CCc--c-eeeeeccCCCcceeEEEEccCCCCeEEEEEc--CCCcEEEeeccc-ccceeeeeccccccceEEEEEcC--
Q 012712           91 --KTE--R-VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIEP--  160 (458)
Q Consensus        91 --~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~--  160 (458)
                        ...  . .......+|...|..+   +  +++++.+++  .|+.|++|++.. ++.+..  +..|...+..++|+|  
T Consensus       118 a~spd~~~~~~~l~s~g~~~~v~~l---~--~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s--~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          118 FCSSDDESEKQVLLKSGNIKAVLGL---T--KRRLVSSSGTLSDQQVEVMTFAEDGGGKEN--QFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             CC------CCEEEEEEEEEEEEEEE---T--TTEEEEEESSSTTCEEEEEEECTTSCEEEE--EEECCCSSCEEEEEEEE
T ss_pred             EECCCccccccEEEeCCCeEEEEec---C--CCcEEEecccCCCCcEEEEEECCCCceeee--eccCCCceeeEEeeccC
Confidence              000  0 0000112333334333   4  666666644  578888888844 444433  567888888899988  


Q ss_pred             -CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          161 -GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       161 -~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                       ++ .+|++++.|++|++||+++++.+..+....       .+...+.+++|+|+ +.++++++.+..  +|+       
T Consensus       191 g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-------~~v~~v~~vafSpd-G~~lvs~s~~~~--~w~-------  252 (356)
T 2w18_A          191 GMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDD-------SYQASVCHKAYSEM-GLLFIVLSHPCA--KES-------  252 (356)
T ss_dssp             TST-TEEEEEETTSEEEEEETTTCCEEEEEECCC----------CCCEEEEEEET-TEEEEEEC----------------
T ss_pred             CCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCC-------cceeeeEEEEECCC-CCEEEEeccCCC--cce-------
Confidence             55 689999999999999999999888875321       12336788899997 677765543211  121       


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS  318 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (458)
                                                          +++++.+ ++++||..+++                         
T Consensus       253 ------------------------------------laSGs~D~tIklWd~~tgk-------------------------  271 (356)
T 2w18_A          253 ------------------------------------ESLRSPVFQLIVINPKTTL-------------------------  271 (356)
T ss_dssp             -----------------------------------------CCEEEEEEETTTTE-------------------------
T ss_pred             ------------------------------------eeccCCCcEEEEEECCCCE-------------------------
Confidence                                                2223322 44555544321                         


Q ss_pred             ccCCCCCCcccccCceee-----cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee-EEE
Q 012712          319 AASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIE  392 (458)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~  392 (458)
                                   .+..+     .+|...  +.+..+   ++.++++|+.|++|+|||+.+++++.++.+|...+. .++
T Consensus       272 -------------~l~v~~~~~p~Gh~~~--~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va  333 (356)
T 2w18_A          272 -------------SVGVMLYCLPPGQAGR--FLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK  333 (356)
T ss_dssp             -------------EEEEEEECCCTTCCCC--EEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred             -------------EEEEEEeeccCCCcce--eEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence                         11111     133322  233333   478999999999999999999999999999987655 589


Q ss_pred             ecCCCCeEEEeecCCcEEEecC
Q 012712          393 PHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       393 ~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      |+|||++|++|+.|++|+|||+
T Consensus       334 fSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          334 WSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ECSSSSEEEEECTTSCEEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEecC
Confidence            9999999999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=100.00  E-value=5.9e-33  Score=249.16  Aligned_cols=303  Identities=15%  Similarity=0.103  Sum_probs=227.7

Q ss_pred             CCCceEEEEEecCC-CEEEEec----CCC----eEEEEEC--CCcceeee-eccCCCcceeEEEEccC------------
Q 012712           60 HRGCVNTVSFNTDG-DILISGS----DDR----RVILWDW--KTERVKLS-FHSGHNDNVFQAKIMPF------------  115 (458)
Q Consensus        60 h~~~v~~~~~s~~~-~~l~s~~----~d~----~i~iwd~--~~~~~~~~-~~~~~~~~i~~~~~~~~------------  115 (458)
                      +...+....|++.| +++++|+    .+|    .|+|||+  .+++.+.. .+.+|...+..+++.+.            
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            34577888898887 4666775    467    8999999  88886632 23678888887777640            


Q ss_pred             CCCeEEEEEcCC------CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC---eEEEEeCCCCCcc
Q 012712          116 TDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAAT  186 (458)
Q Consensus       116 ~~~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~  186 (458)
                      ..+..++.++.+      +.|++||+.... ..  .+..|...+.+++|+|++ +.|++++.++   .|++||+++++..
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~--~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~  216 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF--VVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR  216 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE--EEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCCCC-CE--EEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEE
Confidence            015667666654      799999997433 33  367788999999999999 5678777765   9999999988765


Q ss_pred             ceeeecccCCCCcceeecceEEEEECCCCCcEEE-EecCCCe--EEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712          187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG  263 (458)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      ....           +...+.+++|+|+ ++.|+ +++.++.  |++||+++++.                .....+...
T Consensus       217 ~l~~-----------~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~  268 (415)
T 2hqs_A          217 QVAS-----------FPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI----------------RQVTDGRSN  268 (415)
T ss_dssp             EEEC-----------CSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE----------------EECCCCSSC
T ss_pred             Eeec-----------CCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE----------------EeCcCCCCc
Confidence            3222           3346899999998 56555 6766554  99999987652                122335568


Q ss_pred             eeEEEeCCCCcEEEEecC-C---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          264 ITGLAFSDQSELLVSYND-E---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       264 i~~~~~~~~~~~l~~~~~-~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      +.+++|+|+|+.|+++++ +   .|++||+.++.                                       ...+..+
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---------------------------------------~~~l~~~  309 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---------------------------------------PQRITWE  309 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------------------------------------CEECCCS
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------------------------------------EEEEecC
Confidence            999999999998887774 3   57888877632                                       2223333


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCC---CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEec
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILT  413 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~  413 (458)
                      ..  .+.+++| +|||++|++++.+   ..|++||+.+++. ..+..+. .+.+++|+|||++|++++.++   .|++|+
T Consensus       310 ~~--~~~~~~~-spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          310 GS--QNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             SS--EEEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             CC--cccCeEE-CCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence            33  3778888 9999999988764   5899999988876 4555554 789999999999999988877   799999


Q ss_pred             CCcccccccccccccEEEEEEecCC
Q 012712          414 PNAADRATLPTNIEQVCFSIYSADY  438 (458)
Q Consensus       414 ~~~~~~~~~~~~~~~v~~~~~s~d~  438 (458)
                      +.++....+..|.+.|.+++|+|.-
T Consensus       385 ~~g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          385 TDGRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TTSCCEEECCCSSSEEEEEEECCCC
T ss_pred             CCCCcEEEeeCCCCCCcCCcccccc
Confidence            9988888889999999999999965

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.8e-32  Score=274.54  Aligned_cols=356  Identities=10%  Similarity=0.034  Sum_probs=259.5

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC------C
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD------R   83 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------~   83 (458)
                      +++|+..+. +.|++|++.+|+..                      .+.+|.+.|.+++|||||++||+++.+      .
T Consensus        24 ~~~iaf~~~-~~l~~~~~~gg~~~----------------------~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~   80 (1045)
T 1k32_A           24 GDRIIFVCC-DDLWEHDLKSGSTR----------------------KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTA   80 (1045)
T ss_dssp             TTEEEEEET-TEEEEEETTTCCEE----------------------EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEE
T ss_pred             CCEEEEEEC-CcEEEEECCCCcEE----------------------EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCC
Confidence            357787774 78999999876532                      467899999999999999999987543      4


Q ss_pred             eEEEEECCCcceeeeeccCCCcce-------eEEEEccCCCCeEEEEEcCC------CcEEEeecccccceee-------
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNV-------FQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVET-------  143 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~l~s~~~d------g~i~vw~~~~~~~~~~-------  143 (458)
                      .|++|++.+++. ..+ ..|...+       ..++|+|  ||+++++++.+      ..|.+|++.++.....       
T Consensus        81 ~i~~~d~~~g~~-~~l-t~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~  156 (1045)
T 1k32_A           81 DLYFYNGENGEI-KRI-TYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH  156 (1045)
T ss_dssp             EEEEEETTTTEE-EEC-CCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE
T ss_pred             eEEEEECCCCCe-EEc-ccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcce
Confidence            899999988764 444 6788888       9999999  99977777754      3577777755432110       


Q ss_pred             ----------------------------------------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-
Q 012712          144 ----------------------------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-  182 (458)
Q Consensus       144 ----------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-  182 (458)
                                                              ..+.+|...+.++.|+++  .++++++.++.+.+|.+.. 
T Consensus       157 ~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~  234 (1045)
T 1k32_A          157 ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLD  234 (1045)
T ss_dssp             EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETT
T ss_pred             eeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCC
Confidence                                                    112346667788888876  5777888889889997653 


Q ss_pred             CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc
Q 012712          183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV  262 (458)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (458)
                      +.....+..           ...+...+|+|+ ++.++.+ .++.|++||+...+.. .......    ........+..
T Consensus       235 g~~~~~l~~-----------~~~~~~~~~SpD-G~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~----~~~~~~~~~~~  296 (1045)
T 1k32_A          235 GKDLRKHTS-----------FTDYYPRHLNTD-GRRILFS-KGGSIYIFNPDTEKIE-KIEIGDL----ESPEDRIISIP  296 (1045)
T ss_dssp             SCSCEECCC-----------CCSSCEEEEEES-SSCEEEE-ETTEEEEECTTTCCEE-ECCCCCC----CBCCSEEEECG
T ss_pred             CCcceEecC-----------CCCcceeeEcCC-CCEEEEE-eCCEEEEecCCceEee-eeccCcc----ccccccccccc
Confidence            222222221           113556799998 5777776 5899999998443321 1000000    00001112345


Q ss_pred             ceeEEEeC-CCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712          263 GITGLAFS-DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN  341 (458)
Q Consensus       263 ~i~~~~~~-~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (458)
                      .+..++|+ |+|+.|++++++.+++|+...+.                                       ...+..+..
T Consensus       297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~---------------------------------------~~~~~~~~~  337 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTY---------------------------------------VLKVPEPLR  337 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEETTEEEEECTTSSB---------------------------------------EEECSCCSC
T ss_pred             ccceeeecCCCCCEEEEEEcCEEEEEcCCCCc---------------------------------------eEEccCCCc
Confidence            78999999 99999999988899999986531                                       222334433


Q ss_pred             eeeeeEEEEecCCCcEEEEecCCCeEE-EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          342 CVTVKGVNFFGPKCEYVVSGSDCGRIF-IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      . .+..++| + ||+.|++++.++.+. +|++.+++.. .+.+|...+..++|+|||++|++++.++.|++||+.+++..
T Consensus       338 ~-~~~~~~~-s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~  413 (1045)
T 1k32_A          338 I-RYVRRGG-D-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT  413 (1045)
T ss_dssp             E-EEEEECS-S-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             c-eEEeeeE-c-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE
Confidence            1 3778888 8 999999988888899 9999777654 44478788999999999999999999999999999998776


Q ss_pred             ccc-cccccEEEEEEecCCcEEEeeecCC----------ceEEEEE
Q 012712          421 TLP-TNIEQVCFSIYSADYWWSKSQNFSC----------SILLFEW  455 (458)
Q Consensus       421 ~~~-~~~~~v~~~~~s~d~~~l~s~~~d~----------~i~~w~~  455 (458)
                      .+. .|...+.+++|||||++|++++.++          .|++||.
T Consensus       414 ~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          414 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence            555 7778899999999999998887654          8999984

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=100.00  E-value=1.1e-31  Score=240.85  Aligned_cols=293  Identities=10%  Similarity=0.052  Sum_probs=218.5

Q ss_pred             CCCC-eEEEee----CCC----cEEEEEc--cccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-----
Q 012712            8 NNNK-RARTSV----DKA----LVDVWLR--ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-----   71 (458)
Q Consensus         8 ~~~~-~l~~~~----~d~----~i~iw~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-----   71 (458)
                      +.+. .+++|+    .||    .|+|||+  .+|+.+..                   ..+.+|...+..+++++     
T Consensus        72 ~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~d~~~  132 (415)
T 2hqs_A           72 ALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-------------------NSYKVNKQWLRYAGHTASDEVF  132 (415)
T ss_dssp             TTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-------------------EEEEECGGGHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-------------------eEEEcChhHHHHHHHHHHHHHH
Confidence            4444 466776    567    8999999  88875522                   35778888888777765     


Q ss_pred             ---------CCCEEEEecCC------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---cEEEe
Q 012712           72 ---------DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHA  133 (458)
Q Consensus        72 ---------~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~i~vw  133 (458)
                               .+..++.++.+      +.|++||++.+. ...+ .+|...+.+++|+|  +++.|++++.++   .|++|
T Consensus       133 ~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l-~~~~~~v~~~~~Sp--dg~~la~~s~~~~~~~i~~~  208 (415)
T 2hqs_A          133 EKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQ  208 (415)
T ss_dssp             HHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE-EEESSCEEEEEECT--TSSEEEEEECTTSSCEEEEE
T ss_pred             HHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE-eCCCCcceeeEEcC--CCCEEEEEEecCCCcEEEEE
Confidence                     25566666554      799999997543 4444 57889999999999  999999999875   99999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCe--EEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      |+.+++...   +..|...+.+++|+|++..++++++.++.  |++||+++++......           +...+.+++|
T Consensus       209 d~~tg~~~~---l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~  274 (415)
T 2hqs_A          209 TLANGAVRQ---VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTW  274 (415)
T ss_dssp             ETTTCCEEE---EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-----------CSSCEEEEEE
T ss_pred             ECCCCcEEE---eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC-----------CCCcccceEE
Confidence            998876542   55677889999999999655557776654  9999999876532221           3346889999


Q ss_pred             CCCCCcEEEEecC-CC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC----CcE
Q 012712          212 DPRNANLFAVAGS-DE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFI  284 (458)
Q Consensus       212 ~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~i  284 (458)
                      +|+ ++.|++++. ++  .|++||+.+++.                .....+...+..++|+|+|++|++++.    ..|
T Consensus       275 spd-g~~l~~~s~~~g~~~i~~~d~~~~~~----------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i  337 (415)
T 2hqs_A          275 FPD-SQNLAFTSDQAGRPQVYKVNINGGAP----------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  337 (415)
T ss_dssp             CTT-SSEEEEEECTTSSCEEEEEETTSSCC----------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             CCC-CCEEEEEECCCCCcEEEEEECCCCCE----------------EEEecCCCcccCeEECCCCCEEEEEECcCCceEE
Confidence            998 577776665 45  677788877542                112223457889999999999988763    269


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      ++||+.++.                                       ...+..+.   .+.+++| +|+|++|++++.+
T Consensus       338 ~~~d~~~~~---------------------------------------~~~l~~~~---~~~~~~~-spdg~~l~~~s~~  374 (415)
T 2hqs_A          338 AKQDLATGG---------------------------------------VQVLSSTF---LDETPSL-APNGTMVIYSSSQ  374 (415)
T ss_dssp             EEEETTTCC---------------------------------------EEECCCSS---SCEEEEE-CTTSSEEEEEEEE
T ss_pred             EEEECCCCC---------------------------------------EEEecCCC---CcCCeEE-cCCCCEEEEEEcC
Confidence            999988642                                       12333333   3788888 9999999988877


Q ss_pred             C---eEEEEEecCCeEEEEeecCCceeeEEEecCCCC
Q 012712          365 G---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST  398 (458)
Q Consensus       365 g---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (458)
                      +   .|++||+. ++....+..|.+.|.+++|+|.-.
T Consensus       375 ~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          375 GMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             TTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             CCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            6   89999985 666788899999999999999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=1.2e-30  Score=253.30  Aligned_cols=330  Identities=12%  Similarity=0.089  Sum_probs=230.6

Q ss_pred             CCceEEEEEecCCCEEEEecC-CC-----eEEEEECCCcceeeeeccCCC------------------------cceeEE
Q 012712           61 RGCVNTVSFNTDGDILISGSD-DR-----RVILWDWKTERVKLSFHSGHN------------------------DNVFQA  110 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~~i~~~  110 (458)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+ ..+.                        ..+.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence            467999999999999999988 88     9999999998765544 2322                        348899


Q ss_pred             EEccCCCCeEEEEEcCCCcEEEeeccccc--ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccce
Q 012712          111 KIMPFTDDRSIVTCAADGQVRHAQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL  188 (458)
Q Consensus       111 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  188 (458)
                      +|+|  ||++|++++. +.|.+||+.++.  ...  .+..|...+..++|+|+| +.|+.++ ++.|++||+.+++....
T Consensus       115 ~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          115 QWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EECT--TSSEEEEEET-TEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             EECC--CCCEEEEEeC-CcEEEEECCCCCcceEE--EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe
Confidence            9999  9999999886 899999998772  222  266677889999999999 5666665 46899999998765433


Q ss_pred             eeecccCCCCcc------eeecceEEEEECCCCCcEEEEecCCC---------------------------------eEE
Q 012712          189 FTCRPIDDRRNY------MTVVNLNAIAIDPRNANLFAVAGSDE---------------------------------YTR  229 (458)
Q Consensus       189 ~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~dg---------------------------------~i~  229 (458)
                      ..........++      .....+..++|+|| +++|++++.|+                                 .|+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            221100000000      00012477999998 67888776655                                 788


Q ss_pred             EEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC------CcEEEEEccCCCCCCCCCCCC
Q 012712          230 LYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND------EFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       230 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      +||+.+ ++....             .....+...+..++| |||+.|++...      ..|++||+.++.         
T Consensus       267 ~~d~~~~~~~~~~-------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---------  323 (741)
T 2ecf_A          267 VISPAEQAQTQWI-------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---------  323 (741)
T ss_dssp             EECSSTTCCCEEE-------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------
T ss_pred             EEECCCCCceEEe-------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------
Confidence            889877 542110             001135678999999 99998886542      259999987742         


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccce-e-eeeEEEEecCCCcEEEEecCCCeEEEEEec-CCeEEE
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-V-TVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIR  379 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~  379 (458)
                                                   ....+..+... . .+..++| +|||+++++++.||.++||.+. +++ ..
T Consensus       324 -----------------------------~~~~~~~~~~~~~~~~~~~~~-spdg~~~~~~~~~g~~~l~~~~~~~~-~~  372 (741)
T 2ecf_A          324 -----------------------------QRVLAHETSPTWVPLHNSLRF-LDDGSILWSSERTGFQHLYRIDSKGK-AA  372 (741)
T ss_dssp             -----------------------------EEEEEEEECSSCCCCCSCCEE-CTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred             -----------------------------eEEEEEcCCCCcCCcCCceEE-CCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence                                         22222222210 0 1356777 9999999999999988888775 455 77


Q ss_pred             EeecCCceeeEE-EecCCCCeEEE-eecCC--cEEEecCCc-cc-ccccccccccEEEEEEecCCcEEEeeecC----Cc
Q 012712          380 VIEADRHVVNCI-EPHPHSTVLAS-SGIES--DIKILTPNA-AD-RATLPTNIEQVCFSIYSADYWWSKSQNFS----CS  449 (458)
Q Consensus       380 ~~~~~~~~v~~~-~~s~~~~~l~s-~~~d~--~i~iw~~~~-~~-~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----~~  449 (458)
                      .+..|...+..+ +|+|+++.|+. ++.++  .++||++.. +. ...+.. ...+..++|||||++|+....+    ..
T Consensus       373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~  451 (741)
T 2ecf_A          373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQ  451 (741)
T ss_dssp             ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred             eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCe
Confidence            788888888887 59999997754 45555  899999864 33 334443 5668899999999888765433    34


Q ss_pred             eEEEE
Q 012712          450 ILLFE  454 (458)
Q Consensus       450 i~~w~  454 (458)
                      +.+|+
T Consensus       452 ~~l~~  456 (741)
T 2ecf_A          452 IELFR  456 (741)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=7.2e-30  Score=247.94  Aligned_cols=338  Identities=10%  Similarity=0.016  Sum_probs=225.1

Q ss_pred             CCCCCCCCCeEEEeeC-CC-----cEEEEEcccccccccccccccc-c----cccceEEeeeeeEeecCCCceEEEEEec
Q 012712            3 DASNNNNNKRARTSVD-KA-----LVDVWLRELGQLSTRNFALRRR-A----SEDLVLRLGIYAKLDKHRGCVNTVSFNT   71 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~-d~-----~i~iw~~~~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~h~~~v~~~~~s~   71 (458)
                      .+.++|||++|++++. |+     .|++||+.+|+........... .    +.+. ...+....+. ....|.+++|||
T Consensus        41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~v~~~~~Sp  118 (741)
T 2ecf_A           41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEE-KARRERQRIA-AMTGIVDYQWSP  118 (741)
T ss_dssp             EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------CCEESCCCEECT
T ss_pred             CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchh-hhhhhhhhhc-cccCcceeEECC
Confidence            4568999999999998 88     8999999988754321100000 0    0000 0000000000 113488999999


Q ss_pred             CCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc
Q 012712           72 DGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH  149 (458)
Q Consensus        72 ~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  149 (458)
                      ||++|++++. +.|++||+.++.  ....+ ..|...+..++|+|  ||++|++++. +.|.+||+.+++....  ...+
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SP--DG~~la~~~~-~~i~~~d~~~g~~~~~--~~~~  191 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSP--KGGFVSFIRG-RNLWVIDLASGRQMQL--TADG  191 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECT--TSSEEEEEET-TEEEEEETTTTEEEEC--CCCC
T ss_pred             CCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCC--CCCEEEEEeC-CcEEEEecCCCCEEEe--ccCC
Confidence            9999999886 899999999872  33444 56788899999999  9999999874 6899999987654432  2222


Q ss_pred             cc----------------ceEEEEEcCCCCeEEEEecCCC---------------------------------eEEEEeC
Q 012712          150 QG----------------RAHKLAIEPGSPHVFYTCGEDG---------------------------------LVQHFDL  180 (458)
Q Consensus       150 ~~----------------~v~~~~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~  180 (458)
                      ..                .+..++|+||| +.|++++.|+                                 .|++||+
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             ccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            22                14789999999 4566665554                                 7889999


Q ss_pred             CC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-----CCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712          181 RT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-----DEYTRLYDIRKYKWDGSTDFGQPADYFCPP  254 (458)
Q Consensus       181 ~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  254 (458)
                      .+ ++.......      ..  +...+..++| || +++|++++.     +..|++||+.+++...              
T Consensus       271 ~~~~~~~~~~~~------~~--~~~~~~~~~~-pD-g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~--------------  326 (741)
T 2ecf_A          271 AEQAQTQWIDLG------KE--QDIYLARVNW-RD-PQHLSFQRQSRDQKKLDLVEVTLASNQQRV--------------  326 (741)
T ss_dssp             STTCCCEEECCC------SC--SSEEEEEEEE-EE-TTEEEEEEEETTSSEEEEEEEETTTCCEEE--------------
T ss_pred             CCCCceEEecCC------CC--cceEEEEEEe-CC-CCEEEEEEecccCCeEEEEEEECCCCceEE--------------
Confidence            88 765433211      01  3346889999 98 577776543     5679999998875321              


Q ss_pred             ccccccc-c---ceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712          255 NLIGDEQ-V---GITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV  329 (458)
Q Consensus       255 ~~~~~~~-~---~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (458)
                       +...+. .   .+..++|+|||+++++++. +.+.+|.++..                                     
T Consensus       327 -~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-------------------------------------  368 (741)
T 2ecf_A          327 -LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-------------------------------------  368 (741)
T ss_dssp             -EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-------------------------------------
T ss_pred             -EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-------------------------------------
Confidence             111111 1   3468899999998887774 45677765421                                     


Q ss_pred             ccCceeecCccceeeeeEE-EEecCCCcEEE-EecCCC--eEEEEEecC-CeEEEEeecCCceeeEEEecCCCCeEEEee
Q 012712          330 RIAPQVYKGHRNCVTVKGV-NFFGPKCEYVV-SGSDCG--RIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSG  404 (458)
Q Consensus       330 ~~~~~~~~~~~~~~~i~~~-~~~s~~~~~l~-~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  404 (458)
                      .. ...+..+...  +..+ .| +|+|+.|+ +++.++  .++||++.. ++....+.. ...+..++|+|||++|+...
T Consensus       369 ~~-~~~l~~~~~~--v~~~~~~-s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~  443 (741)
T 2ecf_A          369 GK-AAALTHGNWS--VDELLAV-DEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSW  443 (741)
T ss_dssp             SC-EEESCCSSSC--EEEEEEE-ETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEE
T ss_pred             CC-eeeeeecceE--EEeEeEE-eCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEe
Confidence            12 3444444442  5666 46 99998775 455555  899999874 665667765 55678999999999888764


Q ss_pred             cC----CcEEEecCCcc
Q 012712          405 IE----SDIKILTPNAA  417 (458)
Q Consensus       405 ~d----~~i~iw~~~~~  417 (458)
                      .+    ..+.+|+..++
T Consensus       444 ~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          444 SNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EETTEEEEEEEEETTSC
T ss_pred             cCCCCCCeEEEEEcCCC
Confidence            43    46888887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.97  E-value=4e-30  Score=249.10  Aligned_cols=345  Identities=10%  Similarity=0.064  Sum_probs=230.2

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCC---ceEEEEEecCCCEEEEe
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISG   79 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~   79 (458)
                      ++.|+|+|+++++ +.||.|++||+.+|+..                     ..+.+|..   .|.+++|||||++|+++
T Consensus        21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~   78 (723)
T 1xfd_A           21 EAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------VLIEGKKIESLRAIRYEISPDREYALFS   78 (723)
T ss_dssp             CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------EEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred             ccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------EEeccccccccccceEEECCCCCEEEEE
Confidence            5679999998876 67999999999988765                     23555654   49999999999999998


Q ss_pred             cCC---------CeEEEEECCCcceeeee--ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc
Q 012712           80 SDD---------RRVILWDWKTERVKLSF--HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK  148 (458)
Q Consensus        80 ~~d---------~~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  148 (458)
                      +.+         +.|.+||+.+++. ..+  ...|...+..++|+|  ||+.|++++. +.|++|++.+++....  ...
T Consensus        79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~--~~~  152 (723)
T 1xfd_A           79 YNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRV--VST  152 (723)
T ss_dssp             ESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEE--ECC
T ss_pred             ecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEE--ecC
Confidence            764         7889999998875 222  134555689999999  9999999886 7999999988765443  232


Q ss_pred             cccc------------------eEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          149 HQGR------------------AHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       149 ~~~~------------------v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      +...                  +.+++|+|+|. .|++++ .++.+.+|++......               ....+..+
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  216 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGS---------------IYPTVKPY  216 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSS---------------SSCCCEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCc---------------CCCcceec
Confidence            2222                  37899999995 555554 4456777876532211               11136778


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C----CcE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D----EFI  284 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~----~~i  284 (458)
                      .|.+++ ..    ..+..|++||+.+++....+.         .......+...+..++|+|||++|++.. .    ..|
T Consensus       217 ~~~~~G-~~----~~~~~l~~~d~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  282 (723)
T 1xfd_A          217 HYPKAG-SE----NPSISLHVIGLNGPTHDLEMM---------PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL  282 (723)
T ss_dssp             ECCBTT-SC----CCEEEEEEEESSSSCCCEECC---------CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred             cCCCCC-CC----CCeeEEEEEECCCCceeEEee---------CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence            888863 32    334589999998765311100         0001112356789999999999887654 2    258


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc-cceee--eeEEEEecCCCcEEEE-
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVT--VKGVNFFGPKCEYVVS-  360 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--i~~~~~~s~~~~~l~~-  360 (458)
                      ++||+.++.                                      ....+..+ .....  ...++| +|||++|+. 
T Consensus       283 ~~~d~~~g~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~  323 (723)
T 1xfd_A          283 TLCDATTGV--------------------------------------CTKKHEDESEAWLHRQNEEPVF-SKDGRKFFFI  323 (723)
T ss_dssp             EEEETTTCC--------------------------------------EEEEEEEECSSCCCCCCCCCEE-CTTSCSEEEE
T ss_pred             EEEeCCCCc--------------------------------------ceEEEEeccCCEEeccCCCceE-cCCCCeEEEE
Confidence            999987642                                      12222111 11100  125677 999997775 


Q ss_pred             -ecCCC------eEEEEE-ecCCe--EEEEeecCCceee-EEEecCCCCeEEEeecC---CcEEEecCCcc---cccccc
Q 012712          361 -GSDCG------RIFIWK-KKGGE--LIRVIEADRHVVN-CIEPHPHSTVLASSGIE---SDIKILTPNAA---DRATLP  423 (458)
Q Consensus       361 -~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d---~~i~iw~~~~~---~~~~~~  423 (458)
                       ...++      .|++|| ...++  +...+..+...+. .++|+|||+.|+..+.+   +.++||++...   +...+.
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~  403 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS  403 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred             EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec
Confidence             44566      566677 33333  1455544333444 47999999998766554   78999988643   233343


Q ss_pred             c---ccccEEEEEEecCCcEEEee
Q 012712          424 T---NIEQVCFSIYSADYWWSKSQ  444 (458)
Q Consensus       424 ~---~~~~v~~~~~s~d~~~l~s~  444 (458)
                      .   +...+..++|||||++++..
T Consensus       404 ~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          404 CDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             TTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             ccccCCCCeEEEEECCCCCEEEEE
Confidence            3   56668899999999887753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.97  E-value=1.2e-28  Score=237.84  Aligned_cols=324  Identities=12%  Similarity=0.092  Sum_probs=210.4

Q ss_pred             CCeEEEeeCCCcEEEEEccccccc-ccccccccc----ccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712           10 NKRARTSVDKALVDVWLRELGQLS-TRNFALRRR----ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR   84 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   84 (458)
                      +..+++++.|+ | +||+.+|+.+ ...+.+...    ..++..        ...+...|.+++|||| +.++.+ .++.
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~--------~~~~~~~v~~~~~spd-~~~~~~-~~~~  102 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKF--------QTTDAFPSFRTLDAGR-GLVVLF-TQGG  102 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-------------------CCCEEEEETTT-TEEEEE-ETTE
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcc--------ccccccCceeEEECCC-CeEEEE-ECCE
Confidence            56677777788 8 9999999873 321111000    000000        1123367999999999 555555 3589


Q ss_pred             EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-----ccceeeeeccccccc-------
Q 012712           85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----RGGVETKLLGKHQGR-------  152 (458)
Q Consensus        85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~-------  152 (458)
                      |++||+.+++....  ..+...+.+++|+|  ||+.|+++ .++.|++|++.+     ++....  ...+...       
T Consensus       103 i~~~d~~~~~~~~l--~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~  175 (706)
T 2z3z_A          103 LVGFDMLARKVTYL--FDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAV  175 (706)
T ss_dssp             EEEEETTTTEEEEE--ECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCC
T ss_pred             EEEEECCCCceEEc--cCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccch
Confidence            99999998876443  35677899999999  99999985 679999999987     655432  2222222       


Q ss_pred             -------eEEEEEcCCCCeEEEEec---------------------------------CCCeEEEEeCCCCCccceeeec
Q 012712          153 -------AHKLAIEPGSPHVFYTCG---------------------------------EDGLVQHFDLRTGAATELFTCR  192 (458)
Q Consensus       153 -------v~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~  192 (458)
                             +.++.|+|++ +.|++++                                 .+..|++||+.+++........
T Consensus       176 ~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~  254 (706)
T 2z3z_A          176 HQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE  254 (706)
T ss_dssp             GGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred             hhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence                   4889999999 5666665                                 3467999999887654332110


Q ss_pred             ccCCCCcceeecceEEEEECCCCCcEEEEecCCC-----eEEEEecCCCccCCCccCCCCCCCcCCCccc-cccc---cc
Q 012712          193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLI-GDEQ---VG  263 (458)
Q Consensus       193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~  263 (458)
                            .  +...+.+++|+|+ ++.|++++.++     .|++||+.+++...              .+. ..+.   ..
T Consensus       255 ------~--~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--------------~~~~~~~~~~~~~  311 (706)
T 2z3z_A          255 ------P--KEKFLTNLSWSPD-ENILYVAEVNRAQNECKVNAYDAETGRFVR--------------TLFVETDKHYVEP  311 (706)
T ss_dssp             ------C--TTCEEEEEEECTT-SSEEEEEEECTTSCEEEEEEEETTTCCEEE--------------EEEEEECSSCCCC
T ss_pred             ------C--CceeEeeEEEECC-CCEEEEEEeCCCCCeeEEEEEECCCCceee--------------EEEEccCCCeECc
Confidence                  0  2346889999998 67888877665     89999998862111              011 0111   12


Q ss_pred             eeEEEeCC--CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712          264 ITGLAFSD--QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR  340 (458)
Q Consensus       264 i~~~~~~~--~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (458)
                      +..++|+|  +|++++++. ++.+.+|.++..                                     ......+..+.
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-------------------------------------~~~~~~l~~~~  354 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-------------------------------------GRLIRQVTKGE  354 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETT-------------------------------------SCEEEECCCSS
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECC-------------------------------------CCEEEecCCCC
Confidence            46789999  999888877 446778876521                                     12233444444


Q ss_pred             ceeeeeE-EEEecCCCcEEEEec-CCC----eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC----CcEE
Q 012712          341 NCVTVKG-VNFFGPKCEYVVSGS-DCG----RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE----SDIK  410 (458)
Q Consensus       341 ~~~~i~~-~~~~s~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----~~i~  410 (458)
                      ..  +.. ++| +|+|+.|+.++ .++    .|+.||+.+++ ...+. |...+.+++|+|||++|+....+    +.|+
T Consensus       355 ~~--v~~~~~~-spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~  429 (706)
T 2z3z_A          355 WE--VTNFAGF-DPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVT  429 (706)
T ss_dssp             SC--EEEEEEE-CTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred             eE--EEeeeEE-cCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence            32  555 677 99998876554 444    67777776665 34444 56678999999999988876443    5699


Q ss_pred             EecCCccc
Q 012712          411 ILTPNAAD  418 (458)
Q Consensus       411 iw~~~~~~  418 (458)
                      +|++.+++
T Consensus       430 l~d~~~~~  437 (706)
T 2z3z_A          430 VTNIGKGS  437 (706)
T ss_dssp             EEESSSCE
T ss_pred             EEECCCCe
Confidence            99998876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.97  E-value=1.8e-28  Score=236.76  Aligned_cols=324  Identities=12%  Similarity=0.033  Sum_probs=217.2

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCccee-eeeccCCC-----------------cceeEEEEccCCCCeEEEEEc
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFHSGHN-----------------DNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~-----------------~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      +..+.|+  |+.+++++.|+ | +||+.+++.+ ..+ ..|.                 ..|.+++|+|  | ..++.+.
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d-~~~~~~~   99 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAG--R-GLVVLFT   99 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEEEETT--T-TEEEEEE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeEEECC--C-CeEEEEE
Confidence            4557888  66677777777 8 9999998873 222 1222                 4699999999  8 5555443


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-----CCccceeeecccCCCC--
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRR--  198 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~--  198 (458)
                       ++.|++||+.+++...   +..+...+.+++|+|+| +.|+.+ .++.|++||+.+     ++..............  
T Consensus       100 -~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A          100 -QGGLVGFDMLARKVTY---LFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             -TTEEEEEETTTTEEEE---EECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred             -CCEEEEEECCCCceEE---ccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence             4999999998765433   34466778899999999 456664 679999999998     7654433211100000  


Q ss_pred             --cceeecceEEEEECCCCCcEEEEec---------------------------------CCCeEEEEecCCCccCCCcc
Q 012712          199 --NYMTVVNLNAIAIDPRNANLFAVAG---------------------------------SDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       199 --~~~~~~~v~~~~~~p~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~  243 (458)
                        .......+.+++|+|| +++|++++                                 .+..|++||+.+++....  
T Consensus       174 ~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~--  250 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL--  250 (706)
T ss_dssp             CCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC--
T ss_pred             chhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee--
Confidence              0000112578999998 67888776                                 446799999987653111  


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-----cEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT  317 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (458)
                                 .....+...+..++|+|||+.|++++ +.     .|++||+.++..                       
T Consensus       251 -----------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-----------------------  296 (706)
T 2z3z_A          251 -----------QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-----------------------  296 (706)
T ss_dssp             -----------CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-----------------------
T ss_pred             -----------ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-----------------------
Confidence                       11123456789999999999888765 32     699999876411                       


Q ss_pred             cccCCCCCCcccccCceeec-C-ccce-eeeeEEEEecC--CCcEEEEecCCCeEEEEEec-CCeEEEEeecCCceeeE-
Q 012712          318 SAASPSTANTDVRIAPQVYK-G-HRNC-VTVKGVNFFGP--KCEYVVSGSDCGRIFIWKKK-GGELIRVIEADRHVVNC-  390 (458)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~i~~~~~~s~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-  390 (458)
                                     ...+. . +... ..+..++| +|  ||+++++++.|+.++||.+. +++.+..+..|...+.. 
T Consensus       297 ---------------~~~~~~~~~~~~~~~~~~~~~-sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~  360 (706)
T 2z3z_A          297 ---------------VRTLFVETDKHYVEPLHPLTF-LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNF  360 (706)
T ss_dssp             ---------------EEEEEEEECSSCCCCCSCCEE-CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEE
T ss_pred             ---------------eeEEEEccCCCeECccCCcee-ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEee
Confidence                           11111 1 1110 01355677 99  99999999999999999887 67778888888777876 


Q ss_pred             EEecCCCCeEEEeec-CC----cEEEecCCcccccccccccccEEEEEEecCCcEEEeeecC----CceEEEEE
Q 012712          391 IEPHPHSTVLASSGI-ES----DIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFS----CSILLFEW  455 (458)
Q Consensus       391 ~~~s~~~~~l~s~~~-d~----~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----~~i~~w~~  455 (458)
                      ++|+|+++.|+.++. ++    .|..|++.+++...+. +...+.+++|||||++++....+    +.|.+||.
T Consensus       361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            799999998766544 44    6777777777644444 56679999999999988765443    45999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=2.7e-28  Score=236.32  Aligned_cols=325  Identities=8%  Similarity=-0.020  Sum_probs=221.8

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCc---ceeEEEEccCCCCeEEEEEcCC---------Cc
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAAD---------GQ  129 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~s~~~d---------g~  129 (458)
                      ..+.+++|+|||+++++ +.|++|++||+.+++....+ ..|..   .|.+++|+|  ||++|++++.+         +.
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECC--CCCEEEEEecCccceeecceee
Confidence            34678999999997776 78999999999998876555 55554   499999999  99999998764         77


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC-CCcce-------
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYM-------  201 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~-------  201 (458)
                      +.+||+.+++.........|...+..++|+|+| +.|+.++. +.|++||+.+++............ ..++.       
T Consensus        93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             EEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             EEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence            889999887753322233455568899999999 45666654 799999999887655443211000 00000       


Q ss_pred             eecceEEEEECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712          202 TVVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       202 ~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      ....+.+++|+|| ++.|++++.+ +.+.+|++.....                    .....+..+.|.++|..   ..
T Consensus       171 ~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~G~~---~~  226 (723)
T 1xfd_A          171 ILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTG--------------------SIYPTVKPYHYPKAGSE---NP  226 (723)
T ss_dssp             TSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSS--------------------SSSCCCEEEECCBTTSC---CC
T ss_pred             eccCcceEEECCC-CCEEEEEEECCCccceEEeeccCC--------------------cCCCcceeccCCCCCCC---CC
Confidence            0012378999998 5777776644 5677787653221                    01234678888888752   11


Q ss_pred             CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc----ceeeeeEEEEecCCCc
Q 012712          281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR----NCVTVKGVNFFGPKCE  356 (458)
Q Consensus       281 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~s~~~~  356 (458)
                      ...+++||+.++..                                      ...+..+.    ....+..++| +|||+
T Consensus       227 ~~~l~~~d~~~~~~--------------------------------------~~~l~~~~~~~~~~~~~~~~~~-SpDg~  267 (723)
T 1xfd_A          227 SISLHVIGLNGPTH--------------------------------------DLEMMPPDDPRMREYYITMVKW-ATSTK  267 (723)
T ss_dssp             EEEEEEEESSSSCC--------------------------------------CEECCCCCCGGGSSEEEEEEEE-SSSSE
T ss_pred             eeEEEEEECCCCce--------------------------------------eEEeeCCccCCCccceeEEEEE-eCCCe
Confidence            23799999987432                                      12222210    1124788998 99999


Q ss_pred             EEEEecC----CCeEEEEEecCCeEEEEeec-CCcee----eEEEecCCCCeEEEe--ecCC------cEEEec-CCccc
Q 012712          357 YVVSGSD----CGRIFIWKKKGGELIRVIEA-DRHVV----NCIEPHPHSTVLASS--GIES------DIKILT-PNAAD  418 (458)
Q Consensus       357 ~l~~~~~----dg~i~iwd~~~~~~~~~~~~-~~~~v----~~~~~s~~~~~l~s~--~~d~------~i~iw~-~~~~~  418 (458)
                      +|++...    +..|++||+.+++....+.. +...+    ..++|+|||+.|+..  ..++      .|.+|+ ..+++
T Consensus       268 ~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          268 VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            9876643    36899999999987766644 33444    388999999988754  4566      577788 45555


Q ss_pred             ---ccccccccccEEE-EEEecCCcEEEeeecC---CceEEEEE
Q 012712          419 ---RATLPTNIEQVCF-SIYSADYWWSKSQNFS---CSILLFEW  455 (458)
Q Consensus       419 ---~~~~~~~~~~v~~-~~~s~d~~~l~s~~~d---~~i~~w~~  455 (458)
                         ...+..+...+.. ++|||||++|+..+.+   +.+.||+.
T Consensus       348 ~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             ccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence               5555544445554 6999999998766555   78999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=3.9e-27  Score=205.99  Aligned_cols=288  Identities=14%  Similarity=0.115  Sum_probs=196.4

Q ss_pred             EEecCCCE-EEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccc-eeee
Q 012712           68 SFNTDGDI-LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGG-VETK  144 (458)
Q Consensus        68 ~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~-~~~~  144 (458)
                      .|.+++++ +++++.++.|.+||..+++....+. .+...+ .++|+|  +++++++++. ++.|.+||+.+++. ... 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~-   78 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA-   78 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE-
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe-
Confidence            45555544 7788889999999999998877763 445566 999999  9987666655 88999999988776 332 


Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCC-C--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGED-G--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                       +..+..+..+++|+|++ .+++++..+ +  .|.+||+++++....+..           ...+.+++|+|++..++++
T Consensus        79 -~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~spdg~~l~~~  145 (331)
T 3u4y_A           79 -IQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----------PYDAVGIAISPNGNGLILI  145 (331)
T ss_dssp             -EEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------CTTEEEEEECTTSSCEEEE
T ss_pred             -cccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEEC-----------CCCccceEECCCCCEEEEE
Confidence             44455555559999999 455655555 3  899999999887665542           2246899999985445555


Q ss_pred             ecCCCe-EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCC
Q 012712          222 AGSDEY-TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       222 ~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~  298 (458)
                      ...++. |.+|++.........         . .... .....+..++|+|+|++++...  ++.|.+||+.++...   
T Consensus       146 ~~~~~~~i~~~~~~~~g~~~~~---------~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---  211 (331)
T 3u4y_A          146 DRSSANTVRRFKIDADGVLFDT---------G-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---  211 (331)
T ss_dssp             EETTTTEEEEEEECTTCCEEEE---------E-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---
T ss_pred             ecCCCceEEEEEECCCCcEeec---------C-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---
Confidence            566678 999998754311000         0 0011 1234578999999998665544  457999998764210   


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGEL  377 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~  377 (458)
                                                      .....+..+.   .+..++| +|||++|+.++ .++.|.+||+.+++.
T Consensus       212 --------------------------------~~~~~~~~~~---~~~~~~~-spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          212 --------------------------------TLLNAVGTNN---LPGTIVV-SRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             --------------------------------EEEEEEECSS---CCCCEEE-CTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             --------------------------------ceeeeccCCC---CCceEEE-CCCCCEEEEEEcCCCEEEEEECCCCce
Confidence                                            0033333332   2577888 99999776554 578899999998877


Q ss_pred             --EEEeecC----Cce---eeEEEecCCCCeEEEee-cCCcEEEecCCcccccccc
Q 012712          378 --IRVIEAD----RHV---VNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLP  423 (458)
Q Consensus       378 --~~~~~~~----~~~---v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~  423 (458)
                        +..+..+    ...   ...++|+||+++|++++ .++.|.+|++.......+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~  311 (331)
T 3u4y_A          256 SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVA  311 (331)
T ss_dssp             EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECT
T ss_pred             eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccccee
Confidence              4444322    222   24589999999886554 4679999999876554443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=1e-27  Score=210.85  Aligned_cols=310  Identities=10%  Similarity=0.090  Sum_probs=196.9

Q ss_pred             EEEEecCCCeEEEEECC-CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-CcEEEeecc--cccceeeeeccccc
Q 012712           75 ILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQIL--ERGGVETKLLGKHQ  150 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-g~i~vw~~~--~~~~~~~~~~~~~~  150 (458)
                      .+++++.|+.|++|+++ +++........+...+.+++|+|  ++++|++++.+ +.|.+|++.  ++.......+..+.
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence            44555789999999985 33221111135777899999999  99988888876 999999997  44433222233333


Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCeEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTR  229 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~  229 (458)
                       .+..++|+|++..+++++..++.|.+||+..+..........        ....+.+++|+|+ ++++++++ .++.|+
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--------GLDGCHSANISPD-NRTLWVPALKQDRIC  154 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------CCTTBCCCEECTT-SSEEEEEEGGGTEEE
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--------CCCCceEEEECCC-CCEEEEecCCCCEEE
Confidence             788999999995555556668999999995332222211111        2224788999998 55666555 899999


Q ss_pred             EEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccc
Q 012712          230 LYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTR  306 (458)
Q Consensus       230 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~  306 (458)
                      +||+.+ ++.....          ...........+..++|+|+++++++++  ++.+.+|++.........        
T Consensus       155 ~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~--------  216 (343)
T 1ri6_A          155 LFTVSDDGHLVAQD----------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC--------  216 (343)
T ss_dssp             EEEECTTSCEEEEE----------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE--------
T ss_pred             EEEecCCCceeeec----------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--------
Confidence            999986 4321000          0011111234678899999999765544  557999998642110000        


Q ss_pred             ccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEec--C--CeEEEE
Q 012712          307 SEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKK--G--GELIRV  380 (458)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~--~--~~~~~~  380 (458)
                                             ......+. ++.....+..++| +|+|++|+ ++..++.|++||+.  +  .+.+..
T Consensus       217 -----------------------~~~~~~~~~~~~~~~~~~~i~~-s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~  272 (343)
T 1ri6_A          217 -----------------------VQTLDMMPENFSDTRWAADIHI-TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF  272 (343)
T ss_dssp             -----------------------EEEEECSCTTCCSCCCEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred             -----------------------EeeccccCccccccCCccceEE-CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence                                   00001011 1111223667888 99998887 45578999999998  2  345555


Q ss_pred             eecCCceeeEEEecCCCCeEEEee-cCCcEEEecCC--ccccccc--ccccccEEEEEEecCCc
Q 012712          381 IEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN--AADRATL--PTNIEQVCFSIYSADYW  439 (458)
Q Consensus       381 ~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~--~~~~~~~--~~~~~~v~~~~~s~d~~  439 (458)
                      +..+.. +..++|+|+|++|++++ .++.|.+|+++  +++...+  ........+++|.|+.+
T Consensus       273 ~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          273 QPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             EECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             ecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence            655554 88999999999888877 68999999554  5533222  11223466777777654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=1.8e-26  Score=201.86  Aligned_cols=309  Identities=11%  Similarity=0.056  Sum_probs=200.2

Q ss_pred             CCCCCCCCe-EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC-
Q 012712            4 ASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-   81 (458)
Q Consensus         4 ~~~~~~~~~-l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-   81 (458)
                      +.|++++.+ +++++.++.|++||.++++....                     +..+...+ +++|+|+|++|++++. 
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~-~~~~s~dg~~l~~~~~~   60 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ---------------------ITLGYDFV-DTAITSDCSNVVVTSDF   60 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE---------------------EECCCCEE-EEEECSSSCEEEEEEST
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee---------------------EEccCCcc-eEEEcCCCCEEEEEeCC
Confidence            455555555 77888899999999998887632                     44455666 9999999996666554 


Q ss_pred             CCeEEEEECCCcce-eeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---cEEEeecccccceeeeeccccccceEEEE
Q 012712           82 DRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKLLGKHQGRAHKLA  157 (458)
Q Consensus        82 d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~v~~~~  157 (458)
                      ++.|.+||+.+++. ...+ ..+..+..+++|+|  ++++|+++..++   .|.+||+.+++....  +. ......+++
T Consensus        61 ~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~~~~~~~  134 (331)
T 3u4y_A           61 CQTLVQIETQLEPPKVVAI-QEGQSSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFIST--IP-IPYDAVGIA  134 (331)
T ss_dssp             TCEEEEEECSSSSCEEEEE-EECSSCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEE--EE-CCTTEEEEE
T ss_pred             CCeEEEEECCCCceeEEec-ccCCCCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEE--EE-CCCCccceE
Confidence            88999999998887 4444 45556655599999  999999655553   899999988776554  33 234568999


Q ss_pred             EcCCCCeEEEEecCCCe-EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712          158 IEPGSPHVFYTCGEDGL-VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       158 ~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  236 (458)
                      |+|++..++++...++. |.+|++.............. .     ....+..++|+|++..+++++..++.|.+||+.++
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~-----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  208 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-S-----GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP  208 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-C-----SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-c-----CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            99999666666677688 99999986543322211100 0     22346899999984335566667899999999876


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      +....            ..... ....+..++|+|+|++++.+.  ++.|.+||+.+++..                   
T Consensus       209 ~~~~~------------~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~-------------------  256 (331)
T 3u4y_A          209 ENITL------------LNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS-------------------  256 (331)
T ss_dssp             TSCEE------------EEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE-------------------
T ss_pred             cccce------------eeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee-------------------
Confidence            53100            01111 235678899999999776655  347999998764220                   


Q ss_pred             CCccccCCCCCCcccccCceeecCc----cce-eeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeecCCcee
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGH----RNC-VTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVV  388 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v  388 (458)
                                       ....+..+    ... .....++| +|||++|++++ .++.|.+||+.... +..+.+....-
T Consensus       257 -----------------~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g  317 (331)
T 3u4y_A          257 -----------------FVKSFGHGLLIDPRPLFGANQMAL-NKTETKLFISANISRELKVFTISGKV-VGYVAGIEANG  317 (331)
T ss_dssp             -----------------EEEEEECCCCCCCGGGTTCCCEEE-CTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBS
T ss_pred             -----------------eecccccccccCCCCcccccceEE-CCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccC
Confidence                             01111100    110 01245777 99999886554 56799999996543 33343333222


Q ss_pred             eEEEecCCC
Q 012712          389 NCIEPHPHS  397 (458)
Q Consensus       389 ~~~~~s~~~  397 (458)
                      ....++|++
T Consensus       318 ~~~~~~~~~  326 (331)
T 3u4y_A          318 GIAICHPDK  326 (331)
T ss_dssp             CEEECCCC-
T ss_pred             CeEEECCcc
Confidence            223344443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=1.9e-26  Score=202.80  Aligned_cols=307  Identities=10%  Similarity=0.118  Sum_probs=194.7

Q ss_pred             eEEEeeCCCcEEEEEccc-cccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC-CeEEEEE
Q 012712           12 RARTSVDKALVDVWLREL-GQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD-RRVILWD   89 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd   89 (458)
                      ++++++.|+.|++|++.. ++..                   .... ..|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~   66 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALT-------------------LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR   66 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEE-------------------EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEE-------------------Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence            344557899999999963 3211                   1122 2477789999999999988888876 8999999


Q ss_pred             CC--Ccce--eeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeeccccccee-eeeccccccceEEEEEcCCCC
Q 012712           90 WK--TERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSP  163 (458)
Q Consensus        90 ~~--~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  163 (458)
                      ++  +++.  +..+ ..+ ..+..++|+|  ++++|++++. ++.|.+|++..+.... ...+. ....+.+++|+|++.
T Consensus        67 ~~~~~~~~~~~~~~-~~~-~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~  141 (343)
T 1ri6_A           67 IAPDDGALTFAAES-ALP-GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR  141 (343)
T ss_dssp             ECTTTCCEEEEEEE-ECS-SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS
T ss_pred             ecCCCCceeecccc-ccC-CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC
Confidence            97  5543  2333 223 3789999999  9998876654 8889999995222111 11133 334588999999995


Q ss_pred             eEEEEecCCCeEEEEeCCC-CCcccee--eecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC--Ccc
Q 012712          164 HVFYTCGEDGLVQHFDLRT-GAATELF--TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKW  238 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~  238 (458)
                      .+++++..++.|.+||+.+ ++.....  .....       ....+..++|+|++..+++++..++.|.+|++..  ++.
T Consensus       142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~  214 (343)
T 1ri6_A          142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV-------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI  214 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS-------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred             EEEEecCCCCEEEEEEecCCCceeeecccccccC-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence            5544444889999999987 5433221  11100       1225778999998433445556889999999964  221


Q ss_pred             CCCccCCCCCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          239 DGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      .....         ......  .....+..++|+|+|++|++..  ++.+.+|++......                   
T Consensus       215 ~~~~~---------~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-------------------  266 (343)
T 1ri6_A          215 ECVQT---------LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-------------------  266 (343)
T ss_dssp             EEEEE---------EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-------------------
T ss_pred             EEEee---------ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-------------------
Confidence            00000         000000  1134567899999998776443  558999998731100                   


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEec--CCe--EEEEeecCCceee
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK--GGE--LIRVIEADRHVVN  389 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~v~  389 (458)
                                     ......+..+..   +..++| +|+|++|++++ .++.|.+|++.  +++  .+..+... ....
T Consensus       267 ---------------~~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~  326 (343)
T 1ri6_A          267 ---------------LSKEGFQPTETQ---PRGFNV-DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPM  326 (343)
T ss_dssp             ---------------EEEEEEEECSSS---CCCEEE-CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCC
T ss_pred             ---------------eEEeeeecCCCc---cceEEE-CCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCe
Confidence                           112222332222   567888 99999888777 67999999664  554  34444432 3466


Q ss_pred             EEEecCCCC
Q 012712          390 CIEPHPHST  398 (458)
Q Consensus       390 ~~~~s~~~~  398 (458)
                      +++|.|+.+
T Consensus       327 ~i~~~~~~~  335 (343)
T 1ri6_A          327 WVVVNAHEG  335 (343)
T ss_dssp             EEEEEEEC-
T ss_pred             eEEEEcccC
Confidence            778876544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=8.3e-27  Score=200.61  Aligned_cols=257  Identities=12%  Similarity=0.076  Sum_probs=176.2

Q ss_pred             EeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC-c
Q 012712           15 TSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-E   93 (458)
Q Consensus        15 ~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~   93 (458)
                      .++.|+.|++||+.+++..                      .+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +
T Consensus        17 ~~~~~~~i~~~d~~~~~~~----------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~   73 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR----------------------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP   73 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE----------------------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC
T ss_pred             CCCcceeEEEEeCCCCcee----------------------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC
Confidence            3467899999999977644                      3456889999999999999999987 78999999998 7


Q ss_pred             ceeeeeccCC-CcceeEEEEccCCCCeEEEEEc--CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712           94 RVKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG  170 (458)
Q Consensus        94 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  170 (458)
                      +..... ..+ ...+.+++|+|  ++++|++++  .++..++|.+....... ..+..+ ..+..++|+|++..+++++.
T Consensus        74 ~~~~~~-~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~  148 (297)
T 2ojh_A           74 SPEKVD-TGFATICNNDHGISP--DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGI  148 (297)
T ss_dssp             SCEECC-CTTCCCBCSCCEECT--TSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEE
T ss_pred             CceEec-cccccccccceEECC--CCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEEC
Confidence            765544 344 47889999999  999999988  34566666654322211 113333 34888999999966666888


Q ss_pred             CCCeEEEEeCCC--CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe-cCCCeEEEEecCCCccCCCccCCCC
Q 012712          171 EDGLVQHFDLRT--GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDEYTRLYDIRKYKWDGSTDFGQP  247 (458)
Q Consensus       171 ~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~  247 (458)
                      .++.+++|+++.  ++.. .+..          +...+.+++|+|+ +..++.+ ..++.+++|++....          
T Consensus       149 ~~~~~~l~~~~~~~~~~~-~~~~----------~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~----------  206 (297)
T 2ojh_A          149 RDQVFDIYSMDIDSGVET-RLTH----------GEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDG----------  206 (297)
T ss_dssp             ETTEEEEEEEETTTCCEE-ECCC----------SSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTS----------
T ss_pred             CCCceEEEEEECCCCcce-Eccc----------CCCccccceECCC-CCEEEEEecCCCCccEEEECCCC----------
Confidence            899999998643  3221 1110          2235677888887 4544443 356777777664211          


Q ss_pred             CCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712          248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT  327 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (458)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (297)
T 2ojh_A          207 --------------------------------------------------------------------------------  206 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCceeecCccceeeeeEEEEecCCCcEEEEecCC-----------CeEEEEEecCCeE--EEEeecCCceeeEEEec
Q 012712          328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----------GRIFIWKKKGGEL--IRVIEADRHVVNCIEPH  394 (458)
Q Consensus       328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s  394 (458)
                         .....+..+..  .+..++| +|+|++|++++.+           +.|++||+.+++.  +..+.+|...+..++|+
T Consensus       207 ---~~~~~~~~~~~--~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  280 (297)
T 2ojh_A          207 ---SSVERITDSAY--GDWFPHP-SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS  280 (297)
T ss_dssp             ---SCEEECCCCSE--EEEEEEE-CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred             ---CCcEEEecCCc--ccCCeEE-CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence               00111112222  2556666 7777777766654           5799999988765  44455788889999999


Q ss_pred             CCCCeEEEeecCC
Q 012712          395 PHSTVLASSGIES  407 (458)
Q Consensus       395 ~~~~~l~s~~~d~  407 (458)
                      |++++|++++.+.
T Consensus       281 pdg~~l~~~~~~~  293 (297)
T 2ojh_A          281 PDGDEFAYVRYFP  293 (297)
T ss_dssp             TTSSEEEEEEECC
T ss_pred             CCCCEEEEEEecc
Confidence            9999998887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=2.1e-26  Score=202.03  Aligned_cols=279  Identities=11%  Similarity=0.025  Sum_probs=198.6

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCC-ceEEEEEecCCCEE-EEecCCCeEEE
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRG-CVNTVSFNTDGDIL-ISGSDDRRVIL   87 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~s~~~~~l-~s~~~d~~i~i   87 (458)
                      .+|++++.++.|++||..+++.+..                     +. ++.. .+..++|+|+|+++ ++++.++.|.+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~   60 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKV---------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK   60 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEE---------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEE---------------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEE
Confidence            4789999999999999998876632                     33 2222 47889999999765 56667889999


Q ss_pred             EECCCcceeeeeccCC----CcceeEEEEccCCCCeEEEEEc------------CCCcEEEeecccccceeeeecccccc
Q 012712           88 WDWKTERVKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCA------------ADGQVRHAQILERGGVETKLLGKHQG  151 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~s~~------------~dg~i~vw~~~~~~~~~~~~~~~~~~  151 (458)
                      ||+.+++.+..+..++    ...+..++|+|  ++++|++++            .++.|.+||+.+++....  +. ...
T Consensus        61 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~-~~~  135 (337)
T 1pby_B           61 IDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--FE-APR  135 (337)
T ss_dssp             EETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--EE-CCS
T ss_pred             EECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEEecccccccccccccCceEEEEECCCCcEEEE--Ee-CCC
Confidence            9999988876663332    22678899999  999888886            579999999987765543  22 234


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC-----
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-----  226 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----  226 (458)
                      .+.+++|+|++. .++++  ++.|.+||+++++....+.....        .   ..+.|+|++..+++++..++     
T Consensus       136 ~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--------~---~~~~~s~dg~~l~~~~~~~~~~~~~  201 (337)
T 1pby_B          136 QITMLAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSW--------E---AETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             SCCCEEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTT--------T---TTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             CcceeEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeecccc--------C---CCceeCCCccEEeeeccCCCceeee
Confidence            578899999995 45555  68899999998876655432110        0   12267887433333333333     


Q ss_pred             ------------------eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712          227 ------------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT  288 (458)
Q Consensus       227 ------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~  288 (458)
                                        .|.+||+.+++.. .             .....+...+.+++|+|+|++++++ ++.|++||
T Consensus       202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~-------------~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d  266 (337)
T 1pby_B          202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-M-------------REVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFD  266 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E-------------EEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEE
T ss_pred             eeccccccccccccccccceEEEeCCCCCce-E-------------eecCCCCCceeeEEECCCCCEEEEe-CCeEEEEE
Confidence                              4689998876532 1             1112234567889999999998888 67899999


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                      +.++                                      +....+....   .+.+++| +|+|++|++++.++.|+
T Consensus       267 ~~~~--------------------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~~~~~~~~i~  304 (337)
T 1pby_B          267 LEKN--------------------------------------ASIKRVPLPH---SYYSVNV-STDGSTVWLGGALGDLA  304 (337)
T ss_dssp             TTTT--------------------------------------EEEEEEECSS---CCCEEEE-CTTSCEEEEESBSSEEE
T ss_pred             CCCC--------------------------------------cCcceecCCC---ceeeEEE-CCCCCEEEEEcCCCcEE
Confidence            8763                                      2223333222   2578888 99999999999999999


Q ss_pred             EEEecCCeEEEEeecCCc
Q 012712          369 IWKKKGGELIRVIEADRH  386 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~  386 (458)
                      +||+.+++.+..+..+..
T Consensus       305 v~d~~~~~~~~~~~~~~~  322 (337)
T 1pby_B          305 AYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             EEETTTCCEEEEEECGGG
T ss_pred             EEECcCCcEEEEEEcCCC
Confidence            999999999888876543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=4.5e-26  Score=196.02  Aligned_cols=255  Identities=12%  Similarity=0.131  Sum_probs=183.2

Q ss_pred             EecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-ccceeeeecccc-ccceEE
Q 012712           78 SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLGKH-QGRAHK  155 (458)
Q Consensus        78 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~~~~-~~~v~~  155 (458)
                      +++.|+.|++||+.+++....  ..|...|.+++|+|  ++++|++++ ++.|.+||+.+ ++....  ...+ ...+.+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~--~~~~~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~   89 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVV--WQTPELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNND   89 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEE--EEESSCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSC
T ss_pred             CCCcceeEEEEeCCCCceeee--ccCCcceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccc
Confidence            456789999999998876543  36888999999999  999999987 78999999988 655433  3344 467899


Q ss_pred             EEEcCCCCeEEEEec--CCCeEEEE--eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          156 LAIEPGSPHVFYTCG--EDGLVQHF--DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~--~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      ++|+|++ ..|++++  .++...+|  ++.+++. ..+.           ....+..++|+|++..+++++..++.+++|
T Consensus        90 ~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~-----------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~  156 (297)
T 2ojh_A           90 HGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP-RLMT-----------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIY  156 (297)
T ss_dssp             CEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC-EECC-----------SSSSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             eEECCCC-CEEEEEEeCCCCcceEEEEECCCCce-EEee-----------cCCCccceEECCCCCEEEEEECCCCceEEE
Confidence            9999999 5667766  33444444  5454442 2221           112367788999843344477788888888


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      ++.....                        ..                                               
T Consensus       157 ~~~~~~~------------------------~~-----------------------------------------------  165 (297)
T 2ojh_A          157 SMDIDSG------------------------VE-----------------------------------------------  165 (297)
T ss_dssp             EEETTTC------------------------CE-----------------------------------------------
T ss_pred             EEECCCC------------------------cc-----------------------------------------------
Confidence            7643210                        00                                               


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEec-CCeEEEEeecCCceee
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK-GGELIRVIEADRHVVN  389 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~  389 (458)
                                            ..+..+..  .+.+++| +|+|++|+.++ .++.+++|++. .+..+..+..|...+.
T Consensus       166 ----------------------~~~~~~~~--~~~~~~~-s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  220 (297)
T 2ojh_A          166 ----------------------TRLTHGEG--RNDGPDY-SPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW  220 (297)
T ss_dssp             ----------------------EECCCSSS--CEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE
T ss_pred             ----------------------eEcccCCC--ccccceE-CCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC
Confidence                                  01111111  2677787 99999887665 58899999987 5667778888888999


Q ss_pred             EEEecCCCCeEEEeecC-----------CcEEEecCCccccccc---ccccccEEEEEEecCCcEEEeeecCC
Q 012712          390 CIEPHPHSTVLASSGIE-----------SDIKILTPNAADRATL---PTNIEQVCFSIYSADYWWSKSQNFSC  448 (458)
Q Consensus       390 ~~~~s~~~~~l~s~~~d-----------~~i~iw~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~s~~~d~  448 (458)
                      .++|+|++++|++++.+           +.|.+|++.+++...+   ..|...+..++|+|||++|++++.|.
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99999999999988766           5699999998765433   35677899999999999998877664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=2.8e-25  Score=196.12  Aligned_cols=278  Identities=10%  Similarity=0.063  Sum_probs=202.6

Q ss_pred             CCCceEEEEEecCCCEEEEecC-------CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEE
Q 012712           60 HRGCVNTVSFNTDGDILISGSD-------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVR  131 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~  131 (458)
                      ....+..++|+|+|++|++++.       ++.|.+||..+++.+..+.  ....+..++|+|  +++.++ +...++.|.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~--dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN--TTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET--TTTEEEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC--CCCEEEEEecCCCEEE
Confidence            4466889999999998887764       5689999999998877763  334578899999  988554 556689999


Q ss_pred             Eeecccccceeeeeccccc-------cceEEEEEcCCCCeEEEEe-cCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          132 HAQILERGGVETKLLGKHQ-------GRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      +||..+++...........       ..+.+++|+|++..++++. +.++.|.+||+++++....+..          ..
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~----------~~  184 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN----------TG  184 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC----------CC
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC----------CC
Confidence            9999888766553222111       1268899999996555554 3578999999998877655541          11


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF  283 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  283 (458)
                      ..+.+++|+|+ ++++++++.++.|.+||..+++..                         ..+.....           
T Consensus       185 ~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~-------------------------~~~~~~~~-----------  227 (353)
T 3vgz_A          185 KMSTGLALDSE-GKRLYTTNADGELITIDTADNKIL-------------------------SRKKLLDD-----------  227 (353)
T ss_dssp             TTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEE-------------------------EEEECCCS-----------
T ss_pred             CccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEE-------------------------EEEEcCCC-----------
Confidence            23678899998 678888888999999998765421                         11110000           


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~  363 (458)
                                                                            ++..  .+.+++| +|+|+++++++.
T Consensus       228 ------------------------------------------------------~~~~--~~~~~~~-s~dg~~l~~~~~  250 (353)
T 3vgz_A          228 ------------------------------------------------------GKEH--FFINISL-DTARQRAFITDS  250 (353)
T ss_dssp             ------------------------------------------------------SSCC--CEEEEEE-ETTTTEEEEEES
T ss_pred             ------------------------------------------------------CCCc--ccceEEE-CCCCCEEEEEeC
Confidence                                                                  0111  2567887 999997776654


Q ss_pred             -CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee-cCCcEEEecCCcccccccccccccEEEEEEecCCcEE
Q 012712          364 -CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWS  441 (458)
Q Consensus       364 -dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  441 (458)
                       ++.|.+||+.+++.+..+....  ...++|+|+++++++++ .++.|.+||+.+++..........+.+++|+|||++|
T Consensus       251 ~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  328 (353)
T 3vgz_A          251 KAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTL  328 (353)
T ss_dssp             SSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEE
T ss_pred             CCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEE
Confidence             4999999999999888887544  36799999999665554 6899999999988776555555678999999999877


Q ss_pred             EeeecC
Q 012712          442 KSQNFS  447 (458)
Q Consensus       442 ~s~~~d  447 (458)
                      +.+..+
T Consensus       329 ~v~~~~  334 (353)
T 3vgz_A          329 YVSVKQ  334 (353)
T ss_dssp             EEEEEC
T ss_pred             EEEEcc
Confidence            665554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.95  E-value=6e-26  Score=199.08  Aligned_cols=271  Identities=8%  Similarity=0.039  Sum_probs=194.0

Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCc-ceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeeccc---
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGK---  148 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~---  148 (458)
                      ++|++++.++.|.+||+.+++.+..+..++.. .+..++|+|  +++.+ +++..++.|.+||+.+++.........   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence            47889999999999999999887776333322 488999999  99765 556668899999998887665433322   


Q ss_pred             cccceEEEEEcCCCCeEEEEec------------CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          149 HQGRAHKLAIEPGSPHVFYTCG------------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       149 ~~~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      |...+..++|+|++. .++++.            .++.|.+||+.+++....+..           ...+.+++|+|+ +
T Consensus        80 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~d-g  146 (337)
T 1pby_B           80 RVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARD-G  146 (337)
T ss_dssp             EEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTT-S
T ss_pred             ccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCC-C
Confidence            233677899999994 556654            579999999998876655542           224678899998 5


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-C-------------
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E-------------  282 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~-------------  282 (458)
                      ++++++  ++.|++||+.+++.......              . . ....+.|+|+++.++.... +             
T Consensus       147 ~~l~~~--~~~i~~~d~~~~~~~~~~~~--------------~-~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  208 (337)
T 1pby_B          147 SKLYGL--GRDLHVMDPEAGTLVEDKPI--------------Q-S-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKD  208 (337)
T ss_dssp             SCEEEE--SSSEEEEETTTTEEEEEECS--------------T-T-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred             CEEEEe--CCeEEEEECCCCcEeeeeec--------------c-c-cCCCceeCCCccEEeeeccCCCceeeeeeccccc
Confidence            667666  67899999988764322111              0 0 0112367888876655442 2             


Q ss_pred             -----------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          283 -----------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       283 -----------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                                 .+.+||+.+++.                                    . ...+..+..  .+.+++| 
T Consensus       209 ~~~~~~~~~~~~v~~~d~~~~~~------------------------------------~-~~~~~~~~~--~~~~~~~-  248 (337)
T 1pby_B          209 IDPADPTAYRTGLLTMDLETGEM------------------------------------A-MREVRIMDV--FYFSTAV-  248 (337)
T ss_dssp             SCTTSGGGEEEEEEEEETTTCCE------------------------------------E-EEEEEECSS--CEEEEEE-
T ss_pred             cccccccccccceEEEeCCCCCc------------------------------------e-EeecCCCCC--ceeeEEE-
Confidence                       246677665311                                    0 111222222  3667888 


Q ss_pred             cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +|+|++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++..
T Consensus       249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             CTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            9999999988  799999999999988887644 45789999999999999999999999999887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.95  E-value=5.6e-26  Score=214.04  Aligned_cols=274  Identities=14%  Similarity=0.068  Sum_probs=193.1

Q ss_pred             CCCceEEEEEecCCCEEEEecC-CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeec
Q 012712           60 HRGCVNTVSFNTDGDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQI  135 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~  135 (458)
                      +..+|.+++|+|||++||+++. |++++||++++++. ..+...+...+..++|+|  | +.+++++.   +...++|.+
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEEE
Confidence            3568999999999999999887 99999999866655 444233336899999999  8 77777765   455677666


Q ss_pred             cc--ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          136 LE--RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       136 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      ..  ......  +.... .+...+|+|++..++++.+.++.+.+||+.+++......           ..  ..+++|+|
T Consensus        96 ~~~~~g~~~~--l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-----------~~--~~~~~~sp  159 (582)
T 3o4h_A           96 NTSRPGEEQR--LEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-----------LP--GFGFVSDI  159 (582)
T ss_dssp             ETTSTTCCEE--CTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-----------ES--SCEEEEEE
T ss_pred             eccCCCcccc--ccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-----------CC--CceEEECC
Confidence            44  222221  22222 234568888886555555555556699999886554432           11  17889999


Q ss_pred             CCCcEEEEecCC----CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC--cEEE
Q 012712          214 RNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--FIYL  286 (458)
Q Consensus       214 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--~i~i  286 (458)
                      | ++++++++.+    +.|++||+.+++.                .....+...+..++|+|||+.|+++. ++  .|++
T Consensus       160 D-G~~la~~~~~~~~~~~i~~~d~~~g~~----------------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~  222 (582)
T 3o4h_A          160 R-GDLIAGLGFFGGGRVSLFTSNLSSGGL----------------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVT  222 (582)
T ss_dssp             E-TTEEEEEEEEETTEEEEEEEETTTCCC----------------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred             C-CCEEEEEEEcCCCCeEEEEEcCCCCCc----------------eEeecCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence            8 6888877766    7899999987652                12344567789999999999999665 44  5999


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce------eeeeEEEEecCCCcEEEE
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC------VTVKGVNFFGPKCEYVVS  360 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~s~~~~~l~~  360 (458)
                      ||+.++...                                       .+.++...      ......+| +|||+++++
T Consensus       223 ~d~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~-spdg~~~~~  262 (582)
T 3o4h_A          223 VDPRDGSVE---------------------------------------DLELPSKDFSSYRPTAITWLGY-LPDGRLAVV  262 (582)
T ss_dssp             ECTTTCCEE---------------------------------------ECCCSCSHHHHHCCSEEEEEEE-CTTSCEEEE
T ss_pred             EcCCCCcEE---------------------------------------EccCCCcChhhhhhccccceeE-cCCCcEEEE
Confidence            998874321                                       22222221      01123337 999999999


Q ss_pred             ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEecCCc
Q 012712          361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNA  416 (458)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~~~~  416 (458)
                      ++.++++++|++  ++.+.   .+.+.+.+++|+ +++++++++.+.   .+.+|+..+
T Consensus       263 ~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          263 ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            999999999999  66554   344678999999 999999888774   477888765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.94  E-value=2.7e-25  Score=214.92  Aligned_cols=327  Identities=8%  Similarity=-0.050  Sum_probs=213.2

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCC---ceEEEEEecCCCEEEEe
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG---CVNTVSFNTDGDILISG   79 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~   79 (458)
                      ++.++|++++++++ .|+.|++||+.+|+...                     .+.+|..   .|.+++|||||++||++
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~---------------------~~~~~~~~~~~~~~~~~SpDg~~la~~   77 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT---------------------ILSNRTMKSVNASNYGLSPDRQFVYLE   77 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE---------------------EECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE---------------------EEccccccccceeeEEECCCCCeEEEE
Confidence            45688999655554 69999999999887542                     2334433   48999999999999988


Q ss_pred             cC---------CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712           80 SD---------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ  150 (458)
Q Consensus        80 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  150 (458)
                      +.         ++.|++||+.+++.+...  .....+..++|+|  ||+.|+++. ++.|++|++.+++.... ...++.
T Consensus        78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~  151 (719)
T 1z68_A           78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRE  151 (719)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBT
T ss_pred             ecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCc
Confidence            76         789999999988763111  1125688999999  999999986 68999999987765432 122332


Q ss_pred             cce-----------------EEEEEcCCCCeEEEEecCCC----------------------------------eEEEEe
Q 012712          151 GRA-----------------HKLAIEPGSPHVFYTCGEDG----------------------------------LVQHFD  179 (458)
Q Consensus       151 ~~v-----------------~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iwd  179 (458)
                      ..+                 .+++|+||| +.|++++.|.                                  .|++||
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d  230 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID  230 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred             CCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence            222                 489999999 5667665442                                  788999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC----CeEEEEe----cCCCccCCCccCCCCCCCc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYD----IRKYKWDGSTDFGQPADYF  251 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~  251 (458)
                      +.+++....+.........+  +...+..++|+|| +.++++....    ..|.+||    +.+++..            
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~------------  295 (719)
T 1z68_A          231 TTYPAYVGPQEVPVPAMIAS--SDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCP------------  295 (719)
T ss_dssp             SSCHHHHCCEECCCCHHHHT--SCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECC------------
T ss_pred             CCCCCccceeEccCCccCCC--CcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceE------------
Confidence            98876431111100000001  3346889999998 6777764322    2488899    6665422            


Q ss_pred             CCCccc----ccccccee-----EEEeCCCCcEEEE--ec-CC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712          252 CPPNLI----GDEQVGIT-----GLAFSDQSELLVS--YN-DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT  317 (458)
Q Consensus       252 ~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~-~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (458)
                         .+.    ..+...+.     .++|+|||+.|+.  .. ++  .|++|++.++.                        
T Consensus       296 ---~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~------------------------  348 (719)
T 1z68_A          296 ---KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN------------------------  348 (719)
T ss_dssp             ---GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT------------------------
T ss_pred             ---EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc------------------------
Confidence               122    23444555     7899999986554  32 33  47777765531                        


Q ss_pred             cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC-----CeEEEEEecC--Ce-EEEEeec----CC
Q 012712          318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKG--GE-LIRVIEA----DR  385 (458)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~-~~~~~~~----~~  385 (458)
                                     ...+..+..  .+..+.+ . +++.|+..+.+     +..++|.+..  +. ....+..    |.
T Consensus       349 ---------------~~~lt~~~~--~v~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~  409 (719)
T 1z68_A          349 ---------------AIQITSGKW--EAINIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER  409 (719)
T ss_dssp             ---------------CEECSCSSS--CEEEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred             ---------------eEecccCce--EEEEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence                           233333332  2566777 5 77766655544     8888998764  32 2234432    55


Q ss_pred             ceeeEEEecCCCCeEEEe-ecC--CcEEEecCCcccc
Q 012712          386 HVVNCIEPHPHSTVLASS-GIE--SDIKILTPNAADR  419 (458)
Q Consensus       386 ~~v~~~~~s~~~~~l~s~-~~d--~~i~iw~~~~~~~  419 (458)
                      ..+..+.|+|++++++.. +.+  ..+.+|++.+++.
T Consensus       410 ~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~  446 (719)
T 1z68_A          410 CQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE  446 (719)
T ss_dssp             BCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred             CceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence            678889999999987743 333  4688999877653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=2.7e-24  Score=189.19  Aligned_cols=289  Identities=10%  Similarity=0.087  Sum_probs=183.1

Q ss_pred             CCCeEEEEECC--CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccccceeeeeccccccceEE
Q 012712           81 DDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHK  155 (458)
Q Consensus        81 ~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~  155 (458)
                      .++.|.+|+++  +++........+...+..++|+|  +++ |++++.   ++.|.+|++.++.......+..+...+..
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp--dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA--KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT--TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc--CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            35567777665  45443322234556788899999  999 555544   68999999976554333334456778899


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC--cceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI  233 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  233 (458)
                      ++|+|++..++++...++.|.+|++........+.........  .......+.+++|+|++ +++++...++.|++|++
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~  169 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNV  169 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEE
Confidence            9999999544444447899999999643222222111100000  00012247889999984 57777778899999999


Q ss_pred             C-CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          234 R-KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      . +++....            ..........+..++|+|+|+++++.+  ++.+.+|++......               
T Consensus       170 ~~~g~~~~~------------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~---------------  222 (347)
T 3hfq_A          170 SDAGQLSEQ------------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA---------------  222 (347)
T ss_dssp             CTTSCEEEE------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE---------------
T ss_pred             CCCCcEEEe------------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc---------------
Confidence            8 3321100            001111223567899999999666644  457999998741100               


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCcc----ceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecC---CeEEEEee
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHR----NCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG---GELIRVIE  382 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~---~~~~~~~~  382 (458)
                                         ......+....    ....+..++| +|||++|+ +...++.|.+|++..   .+.+..+.
T Consensus       223 -------------------~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~  282 (347)
T 3hfq_A          223 -------------------FTQLGIVKTIPADYTAHNGAAAIRL-SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS  282 (347)
T ss_dssp             -------------------EEEEEEEESSCTTCCSCCEEEEEEE-CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred             -------------------eEEeeeeeecCCCCCCCCcceeEEE-CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence                               00011111111    0123678888 99999885 555689999999962   25566666


Q ss_pred             cCCceeeEEEecCCCCeEEEeec-CCcEEEe--cCCccccc
Q 012712          383 ADRHVVNCIEPHPHSTVLASSGI-ESDIKIL--TPNAADRA  420 (458)
Q Consensus       383 ~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iw--~~~~~~~~  420 (458)
                      .+...+..++|+|||++|++++. ++.|.+|  +..++++.
T Consensus       283 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          283 TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            66677899999999998888775 4899999  55556544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=1.7e-24  Score=190.79  Aligned_cols=287  Identities=10%  Similarity=0.007  Sum_probs=195.9

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEecCCCEE-EEecC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDIL-ISGSD   81 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l-~s~~~   81 (458)
                      +.+++++.++++++.++.|++||..+++.+..                     +..+. ..+..++|+|+|+++ +++..
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~   63 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKS---------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH   63 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEE---------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEE---------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence            46788899999999999999999998876532                     33332 257789999999865 45567


Q ss_pred             CCeEEEEECCCcceeeeeccCC-----CcceeEEEEccCCCCeEEEEEcCC------------CcEEEeecccccceeee
Q 012712           82 DRRVILWDWKTERVKLSFHSGH-----NDNVFQAKIMPFTDDRSIVTCAAD------------GQVRHAQILERGGVETK  144 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~s~~~d------------g~i~vw~~~~~~~~~~~  144 (458)
                      ++.|.+||+.+++....+...+     ...+..++|+|  ++++|++++.+            +.|.+||+.+++.....
T Consensus        64 ~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  141 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  141 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             CCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence            8999999999988776663233     23478999999  99999988865            89999999875543221


Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC--------------CcceeecceEEEE
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR--------------RNYMTVVNLNAIA  210 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~  210 (458)
                      ....+...+.+++|+|++. + ++++.  .|.+||+.+++....+........              ...........++
T Consensus       142 ~~~~~~~~~~~~~~s~dg~-l-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (349)
T 1jmx_B          142 RTFPMPRQVYLMRAADDGS-L-YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  217 (349)
T ss_dssp             EEEECCSSCCCEEECTTSC-E-EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             eeccCCCcccceeECCCCc-E-EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence            1222344688999999994 4 44443  499999999887665542210000              0000011345567


Q ss_pred             ECCCCC----------cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEe
Q 012712          211 IDPRNA----------NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSY  279 (458)
Q Consensus       211 ~~p~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  279 (458)
                      +++++.          .++.....++.+.+++...                        ....+..++|+| ++++++++
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~sp~dg~~l~~~  273 (349)
T 1jmx_B          218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------------------------LTELYFTGLRSPKDPNQIYGV  273 (349)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEE------------------------CSSCEEEEEECSSCTTEEEEE
T ss_pred             ecCCCcCCccccccceeEEEEeccCCcEEeccccc------------------------CCCcceeeEecCCCCCEEEEE
Confidence            765421          1122333445555555422                        234678999999 99998888


Q ss_pred             cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712          280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV  359 (458)
Q Consensus       280 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~  359 (458)
                       ++.|.+||+.++                                      +....+....   .+.+++| +|+|++|+
T Consensus       274 -~~~v~~~d~~~~--------------------------------------~~~~~~~~~~---~~~~~~~-s~dg~~l~  310 (349)
T 1jmx_B          274 -LNRLAKYDLKQR--------------------------------------KLIKAANLDH---TYYCVAF-DKKGDKLY  310 (349)
T ss_dssp             -ESEEEEEETTTT--------------------------------------EEEEEEECSS---CCCEEEE-CSSSSCEE
T ss_pred             -cCeEEEEECccC--------------------------------------eEEEEEcCCC---CccceEE-CCCCCEEE
Confidence             778999998763                                      2223333222   2567888 99999998


Q ss_pred             EecCCCeEEEEEecCCeEEEEeecC
Q 012712          360 SGSDCGRIFIWKKKGGELIRVIEAD  384 (458)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~~~~  384 (458)
                      +++.++.|++||+.+++.+..+...
T Consensus       311 ~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          311 LGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EecCCCeEEEEeccccceeeeeecC
Confidence            8888999999999999988887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=1.9e-25  Score=210.46  Aligned_cols=263  Identities=10%  Similarity=0.072  Sum_probs=188.8

Q ss_pred             CCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeeccccc-cceEEEEEcCCCCeEEEEecC---CCeEEE
Q 012712          103 HNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGE---DGLVQH  177 (458)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~---dg~i~i  177 (458)
                      +..+|++++|+|  ||+.||+++. ||.++||++..++...   +..|. ..+..++|+|+  +++++++.   +....+
T Consensus        20 ~~~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           20 IAVEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HHSCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEE
T ss_pred             hccchheeecCC--CCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC--eEEEEeccCCCCcceEE
Confidence            356799999999  9999999887 9999999985544322   44455 68999999998  56776664   444566


Q ss_pred             EeCCC--CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712          178 FDLRT--GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN  255 (458)
Q Consensus       178 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  255 (458)
                      |.+..  ......+..           .......+|+|++...+++.+.++.+.+||+.+++..               .
T Consensus        93 ~~~~~~~~g~~~~l~~-----------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~---------------~  146 (582)
T 3o4h_A           93 FKVNTSRPGEEQRLEA-----------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR---------------E  146 (582)
T ss_dssp             EEEETTSTTCCEECTT-----------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE---------------E
T ss_pred             EEEeccCCCccccccC-----------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE---------------E
Confidence            55443  211112110           1123355777774444444444555669999876521               1


Q ss_pred             cccccccceeEEEeCCCCcEEEEec-C----CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccc
Q 012712          256 LIGDEQVGITGLAFSDQSELLVSYN-D----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR  330 (458)
Q Consensus       256 ~~~~~~~~i~~~~~~~~~~~l~~~~-~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (458)
                      +.. +..  .+++|+|||++|++++ +    ..|++||+.++.                                     
T Consensus       147 l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-------------------------------------  186 (582)
T 3o4h_A          147 LAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-------------------------------------  186 (582)
T ss_dssp             EEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-------------------------------------
T ss_pred             eec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-------------------------------------
Confidence            111 112  7899999999999765 3    359999987632                                     


Q ss_pred             cCceeecCccceeeeeEEEEecCCCcEEEEecCCC--eEEEEEecCCeEEEEeecCCceeeEEE--------ecCCCCeE
Q 012712          331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGGELIRVIEADRHVVNCIE--------PHPHSTVL  400 (458)
Q Consensus       331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l  400 (458)
                        ...+..+...  +..++| +|||++|+++..++  .|++||+.+++.. .+..|...+..++        |+|||.++
T Consensus       187 --~~~l~~~~~~--~~~~~~-SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~  260 (582)
T 3o4h_A          187 --LRVFDSGEGS--FSSASI-SPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLA  260 (582)
T ss_dssp             --CEEECCSSCE--EEEEEE-CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred             --ceEeecCCCc--cccceE-CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence              2355556553  788998 99999999888888  8999999998887 7778887777778        99999989


Q ss_pred             EEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCc
Q 012712          401 ASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCS  449 (458)
Q Consensus       401 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~  449 (458)
                      ++++.|+.+++|++  ++...  ...+.+.+++|+ ||+++++++.+..
T Consensus       261 ~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          261 VVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             EEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             EEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCC
Confidence            99999999999999  54443  233568899999 9999988887754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.94  E-value=9.2e-26  Score=218.21  Aligned_cols=329  Identities=11%  Similarity=0.021  Sum_probs=211.1

Q ss_pred             EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCc---ceeEEEEccCCCCeEEEEEcC---------CCcEEEe
Q 012712           66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND---NVFQAKIMPFTDDRSIVTCAA---------DGQVRHA  133 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~s~~~---------dg~i~vw  133 (458)
                      +++|+|||++++++ .|+.|++||+.+++....+ ..|..   .+.+++|+|  ||++|++++.         ++.|++|
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence            78999999766554 6899999999998875554 34433   389999999  9999998876         6899999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC-CCCccee-------ecc
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMT-------VVN  205 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~-------~~~  205 (458)
                      |+.+++......+   ...+..++|+|+|. .|+.+. ++.|++||+.+++........... ...++..       ...
T Consensus        96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           96 DLSNGEFVRGNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             ETTTTEECCSSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             ECCCCccccceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            9988765211112   24688899999995 556554 789999999888764332111000 0000000       011


Q ss_pred             eEEEEECCCCCcEEEEecCCC----------------------------------eEEEEecCCCccCCCccCCCCCCCc
Q 012712          206 LNAIAIDPRNANLFAVAGSDE----------------------------------YTRLYDIRKYKWDGSTDFGQPADYF  251 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~  251 (458)
                      ..+++|+|| ++.|++++.|.                                  .|++||+.+++......+.      
T Consensus       171 ~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~------  243 (719)
T 1z68_A          171 KYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP------  243 (719)
T ss_dssp             SCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC------
T ss_pred             cccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc------
Confidence            258999998 67888877542                                  7889999876531000000      


Q ss_pred             CCCccccccccceeEEEeCCCCcEEEEecC-C----cEEEEE----ccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712          252 CPPNLIGDEQVGITGLAFSDQSELLVSYND-E----FIYLFT----QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP  322 (458)
Q Consensus       252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~----~i~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (458)
                       .......+...+..++|+||++++++..+ +    .|.+||    ..++.                             
T Consensus       244 -~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-----------------------------  293 (719)
T 1z68_A          244 -VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD-----------------------------  293 (719)
T ss_dssp             -CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-----------------------------
T ss_pred             -CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-----------------------------
Confidence             00112346678999999999987776432 1    388888    55431                             


Q ss_pred             CCCCcccccCceee----cCccceeeee-----EEEEecCCCcEEEE--ecCCC--eEEEEEecCCeEEEEeecCCceee
Q 012712          323 STANTDVRIAPQVY----KGHRNCVTVK-----GVNFFGPKCEYVVS--GSDCG--RIFIWKKKGGELIRVIEADRHVVN  389 (458)
Q Consensus       323 ~~~~~~~~~~~~~~----~~~~~~~~i~-----~~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~  389 (458)
                               ....+    .+|...  +.     .+.| +|||+.|+.  ...+|  .|++||+.+++ ...+..+...+.
T Consensus       294 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~-spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~  360 (719)
T 1z68_A          294 ---------CPKTQEHIEESRTGW--AGGFFVSTPVF-SYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI  360 (719)
T ss_dssp             ---------CCGGGEEEEECSSSC--SSSSSCCCCEE-CTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEE
T ss_pred             ---------eEEEEecccccCCce--EccccCCccEE-CCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEE
Confidence                     11122    233332  22     5667 999996554  44455  57777876665 456665666677


Q ss_pred             EEEecCCCCeEEEeecC-----CcEEEecCCc--cc--ccccc----cccccEEEEEEecCCcEEEe-eecC--CceEEE
Q 012712          390 CIEPHPHSTVLASSGIE-----SDIKILTPNA--AD--RATLP----TNIEQVCFSIYSADYWWSKS-QNFS--CSILLF  453 (458)
Q Consensus       390 ~~~~s~~~~~l~s~~~d-----~~i~iw~~~~--~~--~~~~~----~~~~~v~~~~~s~d~~~l~s-~~~d--~~i~~w  453 (458)
                      .+.++ +++.|+..+.+     +..++|.+..  +.  ...+.    .+...+..+.|||||++++. ++.+  ..+.+|
T Consensus       361 ~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~  439 (719)
T 1z68_A          361 NIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH  439 (719)
T ss_dssp             EEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEE
T ss_pred             EEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEE
Confidence            77777 88777666554     7889998753  31  22222    25566889999999977664 3333  245566


Q ss_pred             E
Q 012712          454 E  454 (458)
Q Consensus       454 ~  454 (458)
                      +
T Consensus       440 d  440 (719)
T 1z68_A          440 D  440 (719)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=6.9e-24  Score=187.19  Aligned_cols=271  Identities=11%  Similarity=0.040  Sum_probs=192.1

Q ss_pred             CCCCCCCCeEEEeeC-------CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE
Q 012712            4 ASNNNNNKRARTSVD-------KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL   76 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~-------d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   76 (458)
                      +.++|++++|++++.       ++.|.+||..+++.+..                     +. ....+..++|+|+|+++
T Consensus        46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---------------------~~-~~~~~~~~~~s~dg~~l  103 (353)
T 3vgz_A           46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---------------------IH-NDLKPFGATINNTTQTL  103 (353)
T ss_dssp             EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---------------------EE-ESSCCCSEEEETTTTEE
T ss_pred             eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---------------------Ee-cCCCcceEEECCCCCEE
Confidence            457899998888774       56899999998876633                     22 23447789999999855


Q ss_pred             -EEecCCCeEEEEECCCcceeeeeccCCCc--------ceeEEEEccCCCCeEEEEEc--CCCcEEEeecccccceeeee
Q 012712           77 -ISGSDDRRVILWDWKTERVKLSFHSGHND--------NVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGGVETKL  145 (458)
Q Consensus        77 -~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~  145 (458)
                       ++...++.|.+||..+++.+..+..++..        .+.+++|+|  +++.+++++  .++.|.+||..+++....  
T Consensus       104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~--  179 (353)
T 3vgz_A          104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTA--  179 (353)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEE--
T ss_pred             EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEE--
Confidence             45566799999999999887766332221        278899999  998877765  478899999988776554  


Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      +..+...+..++|+|++ ..+++++.++.|.+||+.+++....+.....    +  ....+..++|+|++..++++...+
T Consensus       180 ~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~--~~~~~~~~~~s~dg~~l~~~~~~~  252 (353)
T 3vgz_A          180 IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDD----G--KEHFFINISLDTARQRAFITDSKA  252 (353)
T ss_dssp             ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCS----S--SCCCEEEEEEETTTTEEEEEESSS
T ss_pred             ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----C--CCcccceEEECCCCCEEEEEeCCC
Confidence            44355567889999999 5677778899999999998877655543111    0  122466788888743344444445


Q ss_pred             CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712          226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      +.|.+||..+++..                         ..                                       
T Consensus       253 ~~v~~~d~~~~~~~-------------------------~~---------------------------------------  268 (353)
T 3vgz_A          253 AEVLVVDTRNGNIL-------------------------AK---------------------------------------  268 (353)
T ss_dssp             SEEEEEETTTCCEE-------------------------EE---------------------------------------
T ss_pred             CEEEEEECCCCcEE-------------------------EE---------------------------------------
Confidence            77888887654310                         00                                       


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeecC
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEAD  384 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  384 (458)
                                                    +....    ...++| +|+|+++++++ .++.|.+||..+++.+..+..+
T Consensus       269 ------------------------------~~~~~----~~~~~~-s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~  313 (353)
T 3vgz_A          269 ------------------------------VAAPE----SLAVLF-NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP  313 (353)
T ss_dssp             ------------------------------EECSS----CCCEEE-ETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ------------------------------EEcCC----CceEEE-CCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence                                          00000    124566 99999665554 6899999999999998888754


Q ss_pred             CceeeEEEecCCCCeEEEeecCC
Q 012712          385 RHVVNCIEPHPHSTVLASSGIES  407 (458)
Q Consensus       385 ~~~v~~~~~s~~~~~l~s~~~d~  407 (458)
                       ..+.+++|+|||++|+++..++
T Consensus       314 -~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          314 -THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             -SEEEEEEECTTSCEEEEEEECC
T ss_pred             -CCCCeEEEcCCCCEEEEEEccc
Confidence             4679999999999877776554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.6e-23  Score=184.33  Aligned_cols=263  Identities=9%  Similarity=0.075  Sum_probs=168.7

Q ss_pred             cCCCceEEEEEecCCCEEEEecC---CCeEEEEECCCcce--eeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEE
Q 012712           59 KHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRH  132 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~v  132 (458)
                      .+...+..++|+|||+ |++++.   ++.|.+|++.+++.  +..+ ..+...+..++|+|  ++++|++++ .++.|.+
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~sp--dg~~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDE--ARQLVYSANYHKGTAEV  112 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEET--TTTEEEEEETTTTEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECC--CCCEEEEEeCCCCEEEE
Confidence            3556778899999999 555443   68999999977653  2222 34677889999999  999888887 6799999


Q ss_pred             eeccccccee-eeeccc---------cccceEEEEEcCCCCeEEEEecCCCeEEEEeCC-CCCccceeeecccCCCCcce
Q 012712          133 AQILERGGVE-TKLLGK---------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYM  201 (458)
Q Consensus       133 w~~~~~~~~~-~~~~~~---------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~  201 (458)
                      |++....... ...+..         +...+.+++|+|++. ++++...++.|.+|++. +++..........       
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------  184 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-------  184 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECC-------
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-------
Confidence            9996432221 111111         123478899999995 77777788999999998 4443222111100       


Q ss_pred             eecceEEEEECCCCCcEEEEecCCCeEEEEecCC--CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE-
Q 012712          202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS-  278 (458)
Q Consensus       202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-  278 (458)
                      ....+..++|+|++..++++...++.|.+|++..  ++.........       ..........+..++|+|+|++|++ 
T Consensus       185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~i~~spdG~~l~v~  257 (347)
T 3hfq_A          185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-------IPADYTAHNGAAAIRLSHDGHFLYVS  257 (347)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-------SCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred             CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-------cCCCCCCCCcceeEEECCCCCEEEEE
Confidence            1124678999998433555567889999999874  22110000000       0000001245889999999997754 


Q ss_pred             ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712          279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY  357 (458)
Q Consensus       279 ~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~  357 (458)
                      .. ++.|.+|++.....                                   ......+..+..  .+..++| +|||++
T Consensus       258 ~~~~~~v~v~~~~~~g~-----------------------------------~~~~~~~~~~~~--~~~~~~~-spdg~~  299 (347)
T 3hfq_A          258 NRGYNTLAVFAVTADGH-----------------------------------LTLIQQISTEGD--FPRDFDL-DPTEAF  299 (347)
T ss_dssp             EETTTEEEEEEECGGGC-----------------------------------EEEEEEEECSSS--CCCEEEE-CTTSSE
T ss_pred             eCCCCEEEEEEECCCCc-----------------------------------EEEeEEEecCCC--CcCeEEE-CCCCCE
Confidence            43 56899999863100                                   122333333322  2678888 999998


Q ss_pred             EEEecCC-CeEEEEEe--cCCeEE
Q 012712          358 VVSGSDC-GRIFIWKK--KGGELI  378 (458)
Q Consensus       358 l~~~~~d-g~i~iwd~--~~~~~~  378 (458)
                      |++++.+ +.|.+|++  .++++.
T Consensus       300 l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          300 VVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEEEcCCCcEEEEEEeCCCCeEE
Confidence            8887654 89999955  456554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=1.6e-22  Score=178.81  Aligned_cols=314  Identities=11%  Similarity=0.068  Sum_probs=192.7

Q ss_pred             CEEEEe----cCCCeEEEEECC--CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC----CcEEEeecccc--cce
Q 012712           74 DILISG----SDDRRVILWDWK--TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILER--GGV  141 (458)
Q Consensus        74 ~~l~s~----~~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~vw~~~~~--~~~  141 (458)
                      .+++.|    +.++.|.+|+++  +++....... +......++|+|  ++++|++++.+    +.|.+|++...  +..
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~   90 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH   90 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence            344555    345789999764  4554333222 667788899999  99999998875    79999998763  222


Q ss_pred             eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeee----cccCCCCcceeecceEEEEECCCCCc
Q 012712          142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC----RPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      .......+......+++  ++..++++...++.|.+|++.....+.....    ..............+.+++|+|++..
T Consensus        91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~  168 (361)
T 3scy_A           91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY  168 (361)
T ss_dssp             EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred             EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence            22223334456677777  6645555555789999999976543322211    00000000012234688999998433


Q ss_pred             EEEEecCCCeEEEEecCCCccCCCccCCCCCCCc-CCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCC
Q 012712          218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF-CPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLG  294 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~  294 (458)
                      ++++...++.|++|++.........   ..+... ............+..++|+|+|+++++.+  ++.|.+|++.++..
T Consensus       169 l~~~~~~~~~v~v~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          169 LLADDLGTDQIHKFNINPNANADNK---EKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTC---CCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCCcccc---cceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            5555556889999998754310000   000000 00011112234578899999999777665  45899999875311


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee---cCccceeeeeEEEEecCCCcEEEEecC--CCeEEE
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY---KGHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIFI  369 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~s~~~~~l~~~~~--dg~i~i  369 (458)
                                                          .....+   ..+..  ....++| +|||++|+++..  ++.|.+
T Consensus       246 ------------------------------------~~~~~~~~~~~~~~--~~~~i~~-spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          246 ------------------------------------DEIQTVAADTVNAQ--GSGDIHL-SPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             ------------------------------------EEEEEEESCSSCCC--CEEEEEE-CTTSSEEEEEECSSSCEEEE
T ss_pred             ------------------------------------EEeEEEecCCCCCC--CcccEEE-CCCCCEEEEECCCCCCEEEE
Confidence                                                011111   11111  2468888 999999876655  489999


Q ss_pred             EEec--CCe--EEEEeecCCceeeEEEecCCCCeEEEee-cCCcEEEe--cCCcccccccc--cccccEEEEEEe
Q 012712          370 WKKK--GGE--LIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKIL--TPNAADRATLP--TNIEQVCFSIYS  435 (458)
Q Consensus       370 wd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw--~~~~~~~~~~~--~~~~~v~~~~~s  435 (458)
                      |++.  +++  .+..+.. ...+..++|+|||++|++++ .++.|.+|  |..+++...+.  .+...+.++.|.
T Consensus       287 ~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          287 FKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9995  444  4445554 45688999999999888887 67899996  55566655443  234468888886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.93  E-value=5.1e-24  Score=190.60  Aligned_cols=296  Identities=9%  Similarity=-0.004  Sum_probs=198.1

Q ss_pred             EEECCCcceeeeeccCCCcceeE-----EEEccCCCCeEEEEEcC-CCc--EEEeecccccceeeeeccccccceEEEEE
Q 012712           87 LWDWKTERVKLSFHSGHNDNVFQ-----AKIMPFTDDRSIVTCAA-DGQ--VRHAQILERGGVETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~~l~s~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  158 (458)
                      .+|..++..+..+ ..|......     .+|+|  ||+.|++++. +|.  |.+||+.+++....  ...+...+..+.|
T Consensus        14 ~~~~~~g~~~~~l-t~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~   88 (388)
T 3pe7_A           14 YQDASTGAQVTRL-TPPDVTCHRNYFYQKCFTR--DGSKLLFGGAFDGPWNYYLLDLNTQVATQL--TEGRGDNTFGGFL   88 (388)
T ss_dssp             EECTTTCCEEEEC-SCTTSCEECCCTTSCCBCT--TSCEEEEEECTTSSCEEEEEETTTCEEEEC--CCSSCBCSSSCEE
T ss_pred             EecCCCCcceEEe-cCCcccccchhhcCccCCC--CCCEEEEEEcCCCCceEEEEeCCCCceEEe--eeCCCCCccceEE
Confidence            3466677766665 566655555     88999  9999998887 664  88888877665443  4455555556789


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce--EEEEECCCCCcEEEEe--------------
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL--NAIAIDPRNANLFAVA--------------  222 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~--------------  222 (458)
                      +|++ ..|+.++.++.|++||+.+++.......+.          ..+  ....++|+ +.+++..              
T Consensus        89 spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~----------~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           89 SPDD-DALFYVKDGRNLMRVDLATLEENVVYQVPA----------EWVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             CTTS-SEEEEEETTTEEEEEETTTCCEEEEEECCT----------TEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHH
T ss_pred             cCCC-CEEEEEeCCCeEEEEECCCCcceeeeechh----------hcccccceeECCC-CCeeccccccCcccccccccc
Confidence            9999 567888888999999999987665544221          112  22345887 5666532              


Q ss_pred             --------cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecCC-------cEEE
Q 012712          223 --------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDE-------FIYL  286 (458)
Q Consensus       223 --------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~-------~i~i  286 (458)
                              ..+..|++||+.+++.                .....+...+..++|+| +|+.|+....+       .|.+
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~----------------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGES----------------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL  220 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCE----------------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred             hhhhhhccCCcceEEEEECCCCce----------------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence                    2446799999987652                12223455688999999 99988776532       5777


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-C-
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-C-  364 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-d-  364 (458)
                      ++....                                       ....+..+.....+...+| +|||+.|+..+. + 
T Consensus       221 ~d~~~~---------------------------------------~~~~l~~~~~~~~~~~~~~-spdg~~l~~~~~~~~  260 (388)
T 3pe7_A          221 INEDGT---------------------------------------NMRKVKTHAEGESCTHEFW-VPDGSALVYVSYLKG  260 (388)
T ss_dssp             EETTSC---------------------------------------CCEESCCCCTTEEEEEEEE-CTTSSCEEEEEEETT
T ss_pred             EeCCCC---------------------------------------ceEEeeeCCCCcccccceE-CCCCCEEEEEecCCC
Confidence            776542                                       1223333332123667787 999998765433 2 


Q ss_pred             ---CeEEEEEecCCeEEE--EeecCCce---eeEEEecCCCCeEEEe---------ecCCcEEEecCCcccccccccccc
Q 012712          365 ---GRIFIWKKKGGELIR--VIEADRHV---VNCIEPHPHSTVLASS---------GIESDIKILTPNAADRATLPTNIE  427 (458)
Q Consensus       365 ---g~i~iwd~~~~~~~~--~~~~~~~~---v~~~~~s~~~~~l~s~---------~~d~~i~iw~~~~~~~~~~~~~~~  427 (458)
                         ..|++||+.+++...  .+.++...   ...++|+|||+.|+..         ..+..|++|++.+++...+..+..
T Consensus       261 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  340 (388)
T 3pe7_A          261 SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT  340 (388)
T ss_dssp             CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred             CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence               249999999887433  33321111   2234799999988854         456789999999988777766665


Q ss_pred             -----------cEEEEEEecCCcEEEeee-cCCceEEEEE
Q 012712          428 -----------QVCFSIYSADYWWSKSQN-FSCSILLFEW  455 (458)
Q Consensus       428 -----------~v~~~~~s~d~~~l~s~~-~d~~i~~w~~  455 (458)
                                 .+..++|||||++|+..+ .++...||.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          341 SWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence                       578899999998877644 6788888875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=2.4e-23  Score=183.41  Aligned_cols=297  Identities=14%  Similarity=0.109  Sum_probs=187.8

Q ss_pred             EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeee
Q 012712           66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETK  144 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~  144 (458)
                      .+++++++.++++++.++.|.+||+.+++.+..+..+....+..++|+|  +++.+ ++...++.|.+||+.+++.....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            3567888899999999999999999999887776333223678999999  99865 45567899999999887765443


Q ss_pred             ecccc----ccceEEEEEcCCCCeEEEEecCC------------CeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712          145 LLGKH----QGRAHKLAIEPGSPHVFYTCGED------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       145 ~~~~~----~~~v~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      .....    ...+..++|+|++ +.+++++.+            +.|.+||+.+++.........        ....+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~  152 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--------MPRQVYL  152 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--------CCSSCCC
T ss_pred             EcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--------CCCcccc
Confidence            22211    3347889999999 456666644            899999998865433322111        2224788


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC-c-CCC-------ccccccccceeEEEeCCCCcEEEEe
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY-F-CPP-------NLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~-------~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                      ++|+|+ ++ +++++.  .|.+||+.+++............. . .+.       ............+++++++......
T Consensus       153 ~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  228 (349)
T 1jmx_B          153 MRAADD-GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  228 (349)
T ss_dssp             EEECTT-SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             eeECCC-Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence            999998 45 455543  499999988765433222110000 0 000       0000000123456666654321111


Q ss_pred             cCC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCc
Q 012712          280 NDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCE  356 (458)
Q Consensus       280 ~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~  356 (458)
                      .++  .+..++..++..                                     ....+..+..  .+..+++ +| +++
T Consensus       229 ~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~--~~~~~~~-sp~dg~  268 (349)
T 1jmx_B          229 ADLLYGYLSVDLKTGKT-------------------------------------HTQEFADLTE--LYFTGLR-SPKDPN  268 (349)
T ss_dssp             CEEEEEEEEEETTTCCE-------------------------------------EEEEEEECSS--CEEEEEE-CSSCTT
T ss_pred             cccceeEEEEeccCCcE-------------------------------------EecccccCCC--cceeeEe-cCCCCC
Confidence            111  122233332110                                     0000011111  2677887 99 999


Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       357 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +++++  ++.|++||+.+++.+..+... ..+.+++|+|++++|++++.++.|++||+.+++..
T Consensus       269 ~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          269 QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence            99988  889999999999988887643 45789999999999998888999999999887654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.92  E-value=1.4e-23  Score=187.68  Aligned_cols=289  Identities=12%  Similarity=0.085  Sum_probs=191.0

Q ss_pred             EeecCCCceEE-----EEEecCCCEEEEecC-CC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           56 KLDKHRGCVNT-----VSFNTDGDILISGSD-DR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        56 ~~~~h~~~v~~-----~~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      .+..|......     .+|||||++|+.++. ++  .|.+||+.+++..... .++...+..+.|+|  |++.|+.++.+
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~sp--dg~~l~~~~~~  101 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSP--DDDALFYVKDG  101 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECT--TSSEEEEEETT
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcC--CCCEEEEEeCC
Confidence            46667666665     889999999998877 66  5888999888765544 56666666788999  99999999999


Q ss_pred             CcEEEeecccccceeeeeccccccceEEE--EEcCCCCeEEEE----------------------ecCCCeEEEEeCCCC
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKL--AIEPGSPHVFYT----------------------CGEDGLVQHFDLRTG  183 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~s----------------------~~~dg~i~iwd~~~~  183 (458)
                      +.|.+||+.+++....  ...+...+...  .++|++ .+++.                      ...+..|.+||+.++
T Consensus       102 ~~l~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          102 RNLMRVDLATLEENVV--YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             TEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             CeEEEEECCCCcceee--eechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            9999999998876544  33333434333  348988 45543                      224478999999998


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECC-CCCcEEEEecCC------CeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL  256 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  256 (458)
                      +......           ....+..++|+| + +..|+....+      ..|.++|....+.               ..+
T Consensus       179 ~~~~l~~-----------~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~---------------~~l  231 (388)
T 3pe7_A          179 ESTVILQ-----------ENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDARMWLINEDGTNM---------------RKV  231 (388)
T ss_dssp             CEEEEEE-----------ESSCEEEEEEETTE-EEEEEEEECSCTTTSSCSEEEEETTSCCC---------------EES
T ss_pred             ceEEeec-----------CCccccccEECCCC-CCEEEEEEecCCCCCcceEEEEeCCCCce---------------EEe
Confidence            7554433           333578899999 8 5677665543      3788888765432               111


Q ss_pred             ccccc-cceeEEEeCCCCcEEEEec--CC--c--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712          257 IGDEQ-VGITGLAFSDQSELLVSYN--DE--F--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV  329 (458)
Q Consensus       257 ~~~~~-~~i~~~~~~~~~~~l~~~~--~~--~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (458)
                      ..... ..+..++|+|||+.|+..+  .+  .  |++||+.+++.                                   
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-----------------------------------  276 (388)
T 3pe7_A          232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-----------------------------------  276 (388)
T ss_dssp             CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-----------------------------------
T ss_pred             eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-----------------------------------
Confidence            12121 3577889999999776544  22  2  99999887421                                   


Q ss_pred             ccCceeecCcccee-eeeEEEEecCCCcEEEEe---------cCCCeEEEEEecCCeEEEEeecCCc-----------ee
Q 012712          330 RIAPQVYKGHRNCV-TVKGVNFFGPKCEYVVSG---------SDCGRIFIWKKKGGELIRVIEADRH-----------VV  388 (458)
Q Consensus       330 ~~~~~~~~~~~~~~-~i~~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v  388 (458)
                       ..+..+.++.... ......| +|||+.|+..         ..+..|++||+.+++. ..+..+..           .+
T Consensus       277 -~~l~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~  353 (388)
T 3pe7_A          277 -RQLTSMPACSHLMSNYDGSLM-VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTH  353 (388)
T ss_dssp             -EEEEEECCEEEEEECTTSSEE-EEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTC
T ss_pred             -EEEEcCCCceeeeecCCCCeE-ccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCC
Confidence             1111222211000 0112246 9999988854         4567899999988765 44555554           57


Q ss_pred             eEEEecCCCCeEEEee-cCCcEEEecCC
Q 012712          389 NCIEPHPHSTVLASSG-IESDIKILTPN  415 (458)
Q Consensus       389 ~~~~~s~~~~~l~s~~-~d~~i~iw~~~  415 (458)
                      ..++|+|||+.|+..+ .++...||.+.
T Consensus       354 ~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          354 PHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             CCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            8899999999887665 46777777543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=2.9e-23  Score=186.67  Aligned_cols=217  Identities=12%  Similarity=0.072  Sum_probs=152.3

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEE----Ee
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI----SG   79 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~----s~   79 (458)
                      +.+++++.++++++.|+ ++||+...-.....     ................ ..|.+.|.+++|+|+|++||    ++
T Consensus        42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK-----PGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHCCCCC-----TTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             EEEecCCCEEEEECCCE-EEEEEchHhhhhcc-----cccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34678888999999888 99998763211100     0000001111111122 24678899999999999999    89


Q ss_pred             cCCCeEEEEECCCc--------cee--eeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccceeeeeccc
Q 012712           80 SDDRRVILWDWKTE--------RVK--LSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGK  148 (458)
Q Consensus        80 ~~d~~i~iwd~~~~--------~~~--~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  148 (458)
                      +.|+.|+|||+.++        +.+  .....+|...|.+++|+|  + +.+|++++.||.|++||++++.....  ..+
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~las~s~Dg~v~iwD~~~~~~~~~--~~~  190 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP--TVPSMVAVCLADGSIAVLQVTETVKVCA--TLP  190 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS--SCTTEEEEEETTSCEEEEEESSSEEEEE--EEC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC--CCCCEEEEEECCCeEEEEEcCCCcceee--ccC
Confidence            99999999998765        111  233467999999999999  7 78999999999999999988754432  556


Q ss_pred             cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE-ecCCC-
Q 012712          149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDE-  226 (458)
Q Consensus       149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg-  226 (458)
                      |...|.+++|+|++ .+|++++.||.|++||++ ++....+..+...   ...+...+.+++|+++ ..++++ ...+| 
T Consensus       191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~---~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~  264 (434)
T 2oit_A          191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY---ESDHPVRVLDVLWIGT-YVFAIVYAAADGT  264 (434)
T ss_dssp             GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTC---CTTSCEEEEEEEEEET-TEEEEEEEETTCC
T ss_pred             CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCccc---CCCCceeEEEEEEecC-ceEEEEEccCCCc
Confidence            88999999999998 688999999999999998 5444443322110   0012347899999996 455543 33343 


Q ss_pred             -----eEEEEecCCCc
Q 012712          227 -----YTRLYDIRKYK  237 (458)
Q Consensus       227 -----~i~i~d~~~~~  237 (458)
                           .+++|+++..+
T Consensus       265 ~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          265 LETSPDVVMALLPKKE  280 (434)
T ss_dssp             SSSCCEEEEEECCCTT
T ss_pred             cCCCCceEEEEeccCC
Confidence                 38999998653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=5.5e-22  Score=175.40  Aligned_cols=305  Identities=10%  Similarity=0.076  Sum_probs=189.1

Q ss_pred             CCCeEEEee----CCCcEEEEEcc--ccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            9 NNKRARTSV----DKALVDVWLRE--LGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         9 ~~~~l~~~~----~d~~i~iw~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      ...+++.|+    .++.|.+|.+.  +|++.                   .+..+  |......++|+|||++|++++.+
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~-------------------~~~~~--~~~~p~~l~~spdg~~l~~~~~~   70 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESL-------------------PLSDA--EVANPSYLIPSADGKFVYSVNEF   70 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEE-------------------EEEEE--ECSCCCSEEECTTSSEEEEEECC
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEE-------------------Eeecc--cCCCCceEEECCCCCEEEEEEcc
Confidence            344566663    46789999775  34432                   12223  66778889999999999998875


Q ss_pred             ----CeEEEEECCC--cce--eeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeecccccceeee----ecc--
Q 012712           83 ----RRVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETK----LLG--  147 (458)
Q Consensus        83 ----~~i~iwd~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~----~~~--  147 (458)
                          +.|.+|+++.  ++.  +... ..+......+++    ++++|++++ .++.|.+|++.....+...    ...  
T Consensus        71 ~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  145 (361)
T 3scy_A           71 SKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS  145 (361)
T ss_dssp             SSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred             CCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence                7999998865  332  2222 234455666666    555565554 6889999999754432210    011  


Q ss_pred             ------ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc------ccee---eecccCCCCcceeecceEEEEEC
Q 012712          148 ------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA------TELF---TCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       148 ------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~---~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                            .+...+.+++|+|++..++++...++.|.+|++.....      +...   ......      ....+..++|+
T Consensus       146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~s  219 (361)
T 3scy_A          146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA------PGSGPRHLIFN  219 (361)
T ss_dssp             CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC------TTCCEEEEEEC
T ss_pred             CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC------CCCCCeEEEEc
Confidence                  11234588999999965666666789999999876542      1111   000000      12246789999


Q ss_pred             CCCCcEEEEec-CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C--CcEEEEE
Q 012712          213 PRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D--EFIYLFT  288 (458)
Q Consensus       213 p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--~~i~i~~  288 (458)
                      |+ ++++++++ .++.|.+||+.+++......          ......+......++|+|+|++|+++. .  +.+.+|+
T Consensus       220 pd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~----------~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          220 SD-GKFAYLINEIGGTVIAFRYADGMLDEIQT----------VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             TT-SSEEEEEETTTCEEEEEEEETTEEEEEEE----------EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             CC-CCEEEEEcCCCCeEEEEEecCCceEEeEE----------EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence            98 56665555 78999999998654211100          011112234467999999999886654 4  4799999


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRI  367 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i  367 (458)
                      +......                                  ......+.. ..  .+..++| +|||++|++++ .++.|
T Consensus       289 ~~~~~g~----------------------------------~~~~~~~~~-g~--~~~~~~~-spdg~~l~~~~~~~~~v  330 (361)
T 3scy_A          289 VDETNGT----------------------------------LTKVGYQLT-GI--HPRNFII-TPNGKYLLVACRDTNVI  330 (361)
T ss_dssp             ECTTTCC----------------------------------EEEEEEEEC-SS--CCCEEEE-CTTSCEEEEEETTTTEE
T ss_pred             EcCCCCc----------------------------------EEEeeEecC-CC--CCceEEE-CCCCCEEEEEECCCCCE
Confidence            8631100                                  111222222 11  3678888 99999988877 67899


Q ss_pred             EEEEec--CCeEEEEe-ecCCceeeEEEec
Q 012712          368 FIWKKK--GGELIRVI-EADRHVVNCIEPH  394 (458)
Q Consensus       368 ~iwd~~--~~~~~~~~-~~~~~~v~~~~~s  394 (458)
                      .+|++.  +++..... ..+...+.|++|.
T Consensus       331 ~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          331 QIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            997654  66654433 1234467888885

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.92  E-value=1.1e-22  Score=196.57  Aligned_cols=351  Identities=10%  Similarity=0.019  Sum_probs=213.6

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCC-----ceEEEEEecCCCEEE
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRG-----CVNTVSFNTDGDILI   77 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~   77 (458)
                      .+.++|++++++++  |+.|++||+.+|+..                     ..+.+|..     ....++|||||++|+
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~   77 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------VFLENSTFDEFGHSINDYSISPDGQFIL   77 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------EEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------EEEechhhhhhcccccceEECCCCCEEE
Confidence            45688999888886  999999999988754                     22455543     234588999999999


Q ss_pred             EecCC---------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc
Q 012712           78 SGSDD---------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK  148 (458)
Q Consensus        78 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  148 (458)
                      .++.+         +.+.+||+.+++... + ..|...+..++|||  ||+.||.+. ++.|.+|++.++..... ...+
T Consensus        78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l-~~~~~~~~~~~~SP--dG~~la~~~-~~~i~~~~~~~~~~~~l-t~~g  151 (740)
T 4a5s_A           78 LEYNYVKQWRHSYTASYDIYDLNKRQLIT-E-ERIPNNTQWVTWSP--VGHKLAYVW-NNDIYVKIEPNLPSYRI-TWTG  151 (740)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTTTEECC-S-SCCCTTEEEEEECS--STTCEEEEE-TTEEEEESSTTSCCEEC-CSCC
T ss_pred             EEECCeeeEEEccceEEEEEECCCCcEEE-c-ccCCCcceeeEECC--CCCEEEEEE-CCeEEEEECCCCceEEE-cCCC
Confidence            98876         567799999987643 3 56778899999999  999999885 68999999987764432 1223


Q ss_pred             cccce-----------------EEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          149 HQGRA-----------------HKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       149 ~~~~v-----------------~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      +...+                 ..+.|+|||. .|+..+ .++.+.+|++.......  .           ....+..+.
T Consensus       152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~--~-----------~~~~~~~~~  217 (740)
T 4a5s_A          152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDES--L-----------QYPKTVRVP  217 (740)
T ss_dssp             BTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTT--C-----------SSCEEEEEE
T ss_pred             CccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCC--C-----------CCCcceeec
Confidence            32222                 3589999995 455554 44558888764322111  0           111355666


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCC---CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C--C--
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRK---YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D--E--  282 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--~--  282 (458)
                      +.+.+ ..    .....|++||+.+   ++......+.       .......+...+..++|+|||++++... .  +  
T Consensus       218 yp~~G-~~----~~~~~l~v~d~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~  285 (740)
T 4a5s_A          218 YPKAG-AV----NPTVKFFVVNTDSLSSVTNATSIQIT-------APASMLIGDHYLCDVTWATQERISLQWLRRIQNYS  285 (740)
T ss_dssp             CCBTT-SC----CCEEEEEEEETTSCCSSSCCCEEEEC-------CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred             CCCCc-Cc----CCeeEEEEEECCCCCCCCcceEEEec-------CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence            76653 21    1223689999988   5211110000       0000113567799999999999766543 1  1  


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee--cCccceee---eeEEEEecCCCcE
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY--KGHRNCVT---VKGVNFFGPKCEY  357 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---i~~~~~~s~~~~~  357 (458)
                      .|++||+.++.....                                ......+  .++.....   .....| +|||+.
T Consensus       286 ~i~~~d~~tg~~~~~--------------------------------~~~~~~l~~~~~~~~v~~~~~~~p~f-spDG~~  332 (740)
T 4a5s_A          286 VMDICDYDESSGRWN--------------------------------CLVARQHIEMSTTGWVGRFRPSEPHF-TLDGNS  332 (740)
T ss_dssp             EEEEEEEETTTTEEE--------------------------------ECGGGCEEEECSSSCSSSSSCCCCEE-CTTSSE
T ss_pred             EEEEEECCCCccccc--------------------------------eeEEEEeeeccCCceEccCcCCCceE-cCCCCE
Confidence            599999987530000                                0001111  22222111   224567 999998


Q ss_pred             EE-EecC-C--CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE-Eeec----CCcEEE--ecCCccccc-cccc-
Q 012712          358 VV-SGSD-C--GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA-SSGI----ESDIKI--LTPNAADRA-TLPT-  424 (458)
Q Consensus       358 l~-~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~----d~~i~i--w~~~~~~~~-~~~~-  424 (458)
                      |+ ..+. +  ..|++||+.+++.. .+......+..+.. +|++.|+ ++..    .+...|  .++.++... .+.. 
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~  410 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCE  410 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTT
T ss_pred             EEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccc
Confidence            77 5543 3  46888898766554 44433444555432 3466554 4433    233444  455554332 2321 


Q ss_pred             ---ccccEEEEEEecCCcEEEe
Q 012712          425 ---NIEQVCFSIYSADYWWSKS  443 (458)
Q Consensus       425 ---~~~~v~~~~~s~d~~~l~s  443 (458)
                         .......+.|||||++++.
T Consensus       411 ~~~~~~~~~~~~~S~dg~~~~~  432 (740)
T 4a5s_A          411 LNPERCQYYSVSFSKEAKYYQL  432 (740)
T ss_dssp             TSTTTBCBEEEEECTTSSEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEE
Confidence               2356889999999987654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.91  E-value=2.7e-22  Score=176.18  Aligned_cols=310  Identities=12%  Similarity=0.086  Sum_probs=203.6

Q ss_pred             CCCCCeEEEee------CCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            7 NNNNKRARTSV------DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         7 ~~~~~~l~~~~------~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      +++++++++..      .|+.|.+||..+++++.                     ++..+..+  .++|+|||++|+++.
T Consensus        12 ~~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~---------------------~i~~g~~p--~i~~spdg~~lyv~~   68 (361)
T 2oiz_A           12 APQENRIYVMDSVFMHLTESRVHVYDYTNGKFLG---------------------MVPTAFNG--HVQVSNDGKKIYTMT   68 (361)
T ss_dssp             SCGGGEEEEEECCGGGGGGCEEEEEETTTCCEEE---------------------EEECCEEE--EEEECTTSSEEEEEE
T ss_pred             CCCCCEEEEECCCCCccccCeEEEEECCCCeEEE---------------------EecCCCCC--ceEECCCCCEEEEEE
Confidence            34667776653      47899999999887663                     35555555  899999999999876


Q ss_pred             ----------CCCeEEEEECCCcceeeeeccC-----CCcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceee
Q 012712           81 ----------DDRRVILWDWKTERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET  143 (458)
Q Consensus        81 ----------~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~  143 (458)
                                .++.|.+||..+++.+..+...     +......++++|  |+++|+++..  ++.|.+||+.+++.+..
T Consensus        69 ~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           69 TYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             EEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             ecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence                      2578999999988887766322     234567899999  9999998874  57899999988765433


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      . +. . .....+.+.|+++..+++.+.||.+.+|++.. ++.............    .. ....+.++|+ +..++..
T Consensus       147 ~-i~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~----~~-~~~~~~~~~~-g~~~~~~  217 (361)
T 2oiz_A          147 V-TA-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV----KD-DPIFIAPALD-KDKAHFV  217 (361)
T ss_dssp             E-GG-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT----TT-SCBCSCCEEC-SSEEEEE
T ss_pred             E-ec-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC----CC-CceEEEeccc-CCEEEEE
Confidence            0 11 1 12233567887767788899999999999865 443311110000000    00 1112233555 3455566


Q ss_pred             cCCCeEEEEecCCCccCCCccCCCCCCCcCCC-ccccccccceeEEEeCCCCcEEEEec------------CCcEEEEEc
Q 012712          223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP-NLIGDEQVGITGLAFSDQSELLVSYN------------DEFIYLFTQ  289 (458)
Q Consensus       223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~------------~~~i~i~~~  289 (458)
                      +.++.+.++|+..........+.  .  .... ............++|+|+++.+....            .+.|.+||+
T Consensus       218 ~~~~~v~v~d~~~~~~~~~~~~~--~--~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          218 SYYGNVYSADFSGDEVKVDGPWS--L--LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             BTTSEEEEEECSSSSCEEEEEEE--S--CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             eCCCeEEEEEecCCCceeccccc--c--cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence            67899999998754311000000  0  0000 00000011122378999977665542            236999998


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                      .+                                      .+.+..+..+.    ..+++| +|||++|++++. +.|.+
T Consensus       294 ~t--------------------------------------~~~v~~i~~~~----p~~ia~-spdg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          294 KT--------------------------------------KQRVARIPGRD----ALSMTI-DQQRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             TT--------------------------------------TEEEEEEECTT----CCEEEE-ETTTTEEEEECS-SCEEE
T ss_pred             CC--------------------------------------CcEEEEEecCC----eeEEEE-CCCCCEEEEeCC-CeEEE
Confidence            87                                      34455555554    578888 999999998887 99999


Q ss_pred             EEecCC--eEEEEeecCCceeeEEEecCCCC
Q 012712          370 WKKKGG--ELIRVIEADRHVVNCIEPHPHST  398 (458)
Q Consensus       370 wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~  398 (458)
                      ||..++  +.+.++..+......++++|+|+
T Consensus       330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            999999  99999876777788999999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.90  E-value=5.5e-23  Score=184.47  Aligned_cols=294  Identities=12%  Similarity=0.042  Sum_probs=193.2

Q ss_pred             ceEEEEEecCCCEEEEecCC---CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712           63 CVNTVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG  139 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  139 (458)
                      .+.+++|||||++|+.....   ..|.+||+.+++..... ..+......+.|+|  |++.|+.++.++.|.+|++.+++
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFIST--DERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECT--TSSEEEEEETTTEEEEEETTTCC
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECC--CCCEEEEEEcCCcEEEEECCCCC
Confidence            37788999999998876443   47899999887754332 33333333488999  99999999998899999998776


Q ss_pred             ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      ....  ...+..      |+|++ ..|+....+....+|.                           ..+.|+|+ ++.+
T Consensus       114 ~~~~--~~~~~~------~~~~g-~~l~~~~~~~~~~~~~---------------------------~~~~~spd-g~~~  156 (396)
T 3c5m_A          114 EQVI--YTVDEE------WKGYG-TWVANSDCTKLVGIEI---------------------------LKRDWQPL-TSWE  156 (396)
T ss_dssp             EEEE--EECCTT------EEEEE-EEEECTTSSEEEEEEE---------------------------EGGGCCCC-CSHH
T ss_pred             cEEE--Eecccc------cCCCC-CEEEeccCCccccccc---------------------------cccccCCC-Ccce
Confidence            5433  222222      66666 5566555554444332                           11346776 4555


Q ss_pred             EEe-----cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecC-------CcEEE
Q 012712          220 AVA-----GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND-------EFIYL  286 (458)
Q Consensus       220 ~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-------~~i~i  286 (458)
                      +..     ..+..|++||+.+++..                ....+...+..+.|+| +++.|+..++       ..|++
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~----------------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (396)
T 3c5m_A          157 KFAEFYHTNPTCRLIKVDIETGELE----------------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL  220 (396)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTCCEE----------------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred             eeeeeccCCCcceEEEEECCCCcEE----------------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence            443     35668999999876421                1113455788999999 7887666543       24777


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC--
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC--  364 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d--  364 (458)
                      |++..+.                                       ...+..+.....+..++| +|||++|+.++.+  
T Consensus       221 ~d~~~~~---------------------------------------~~~l~~~~~~~~~~~~~~-spdg~~l~~~~~~~~  260 (396)
T 3c5m_A          221 VNEDGSN---------------------------------------VRKIKEHAEGESCTHEFW-IPDGSAMAYVSYFKG  260 (396)
T ss_dssp             EETTSCC---------------------------------------CEESSCCCTTEEEEEEEE-CTTSSCEEEEEEETT
T ss_pred             EECCCCc---------------------------------------eeEeeccCCCccccceEE-CCCCCEEEEEecCCC
Confidence            7765421                                       112222211123677888 9999988776543  


Q ss_pred             ---CeEEEEEecCCeEEEEeecCCceeeEEEecC-CCCeEEEee----------------cCCcEEEecCCccccccccc
Q 012712          365 ---GRIFIWKKKGGELIRVIEADRHVVNCIEPHP-HSTVLASSG----------------IESDIKILTPNAADRATLPT  424 (458)
Q Consensus       365 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~----------------~d~~i~iw~~~~~~~~~~~~  424 (458)
                         +.|++||+.+++........ . .. ++|+| ||++|++++                .+..|++|++.+++...+..
T Consensus       261 ~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  337 (396)
T 3c5m_A          261 QTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK  337 (396)
T ss_dssp             TCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE
T ss_pred             CccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC
Confidence               45999999888654433222 2 23 89999 999888754                34789999999887766655


Q ss_pred             ccc-----------cEEEEEEecCCcEEEeee-cCCceEEEEE
Q 012712          425 NIE-----------QVCFSIYSADYWWSKSQN-FSCSILLFEW  455 (458)
Q Consensus       425 ~~~-----------~v~~~~~s~d~~~l~s~~-~d~~i~~w~~  455 (458)
                      +..           .+..++|+|||++|+..+ .++...||.+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          338 HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            544           256789999998887655 4667777765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.90  E-value=3e-21  Score=169.55  Aligned_cols=306  Identities=7%  Similarity=-0.055  Sum_probs=198.7

Q ss_pred             CCCEEEEec------CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----------CCcEEEeec
Q 012712           72 DGDILISGS------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQI  135 (458)
Q Consensus        72 ~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------dg~i~vw~~  135 (458)
                      +++++++..      .|+.|.+||..+++.+..+ ..+..+  .++|+|  |++++++++.          ++.|.+||.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            455555432      3679999999999887776 344444  899999  9999998863          567999999


Q ss_pred             ccccceeeeeccc----cccceEEEEEcCCCCeEEEEec-C-CCeEEEEeCCCCCccce-eeecccCCCCcceeecceEE
Q 012712          136 LERGGVETKLLGK----HQGRAHKLAIEPGSPHVFYTCG-E-DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       136 ~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~  208 (458)
                      .+.+......+..    +......++++|+++ +|+++. . ++.|.+||+++++.+.. +...            ....
T Consensus        89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~------------~~~~  155 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAAA------------GCWS  155 (361)
T ss_dssp             TTCCEEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGGT------------TEEE
T ss_pred             cCCcEEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecCC------------Ccce
Confidence            8877665432221    224567799999995 555554 3 68999999999876554 3211            1233


Q ss_pred             EEECCCCCcEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEE
Q 012712          209 IAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL  286 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i  286 (458)
                      +.+.|++...+++.+.||.+.+|+... ++.......         .........+ ..+.++|++..++..+ ++.+++
T Consensus       156 v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~---------~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v  225 (361)
T 2oiz_A          156 VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS---------KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYS  225 (361)
T ss_dssp             EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC---------CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEE
T ss_pred             eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc---------cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEE
Confidence            567787557888888999999998865 321100000         0001111111 1233456665555444 567999


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce--eecCccceeeeeEEEEecCCCcEEEEecC-
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNFFGPKCEYVVSGSD-  363 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-  363 (458)
                      +|+........ .                             ......  .......+.....+++ +|+++.++++.. 
T Consensus       226 ~d~~~~~~~~~-~-----------------------------~~~~~~~~~~~~~~~p~g~~~~a~-~~dg~~lyv~~~~  274 (361)
T 2oiz_A          226 ADFSGDEVKVD-G-----------------------------PWSLLNDEDKAKNWVPGGYNLVGL-HRASGRMYVFMHP  274 (361)
T ss_dssp             EECSSSSCEEE-E-----------------------------EEESCCHHHHHTTCEECCSSCEEE-ETTTTEEEEEEES
T ss_pred             EEecCCCceec-c-----------------------------cccccCccccccccccCCeeEEEE-ecCCCeEEEEEcc
Confidence            99864311000 0                             000000  0000000000122566 999888776543 


Q ss_pred             ----------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc--ccccc-ccccccEE
Q 012712          364 ----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA--DRATL-PTNIEQVC  430 (458)
Q Consensus       364 ----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~--~~~~~-~~~~~~v~  430 (458)
                                .+.|.+||+.+++.+.++..+.  +.+++|+|||++|++++. +.|.+||..++  +.... ........
T Consensus       275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~  351 (361)
T 2oiz_A          275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASL  351 (361)
T ss_dssp             SCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEE
T ss_pred             CCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcE
Confidence                      3589999999999999998877  999999999999998886 99999999998  76644 46666788


Q ss_pred             EEEEecCCc
Q 012712          431 FSIYSADYW  439 (458)
Q Consensus       431 ~~~~s~d~~  439 (458)
                      .++++|||.
T Consensus       352 ~~~~~p~G~  360 (361)
T 2oiz_A          352 QVQFHPVGG  360 (361)
T ss_dssp             EEEECCCSC
T ss_pred             EEEecCCCC
Confidence            999999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=4e-22  Score=192.67  Aligned_cols=328  Identities=9%  Similarity=-0.018  Sum_probs=209.1

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcc-----eeEEEEccCCCCeEEEEEcCC---------
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-----VFQAKIMPFTDDRSIVTCAAD---------  127 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~l~s~~~d---------  127 (458)
                      ....+++|+|||++|+++  |+.|++||+.+++....+ .+|...     ...+.|||  ||++|++++.+         
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECC--CCCEEEEEECCeeeEEEccc
Confidence            346689999999999886  899999999999875544 555432     24588999  99999998875         


Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC-CCCccee----
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMT----  202 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~----  202 (458)
                      +.+.+||+.+++...   +..|...+...+|+|||. .|+.+ .++.|++||+.+++..+........ ...++..    
T Consensus        92 ~~~~~~d~~~~~~~~---l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT---EERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEEEETTTTEECC---SSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eEEEEEECCCCcEEE---cccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            567799998876432   566778899999999995 45555 4689999999887754322110000 0000000    


Q ss_pred             ---ecceEEEEECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712          203 ---VVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS  278 (458)
Q Consensus       203 ---~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (458)
                         ......+.|+|| ++.|+.++.| +.+.+|++......              .    .+...+..+.+.+.|...  
T Consensus       167 ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~--------------~----~~~~~~~~~~yp~~G~~~--  225 (740)
T 4a5s_A          167 EEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDE--------------S----LQYPKTVRVPYPKAGAVN--  225 (740)
T ss_dssp             HHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCST--------------T----CSSCEEEEEECCBTTSCC--
T ss_pred             chhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCC--------------C----CCCCcceeecCCCCcCcC--
Confidence               012245899998 6777776644 44888887543210              0    123345667777766320  


Q ss_pred             ecCCcEEEEEccC---CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712          279 YNDEFIYLFTQDM---GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC  355 (458)
Q Consensus       279 ~~~~~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~  355 (458)
                       ....+++||+.+   +.......                              ......+.++..  .+..++| +|||
T Consensus       226 -~~~~l~v~d~~~~~~~~~~~~~~------------------------------l~~~~~~~~~~~--~~~~~~w-spdg  271 (740)
T 4a5s_A          226 -PTVKFFVVNTDSLSSVTNATSIQ------------------------------ITAPASMLIGDH--YLCDVTW-ATQE  271 (740)
T ss_dssp             -CEEEEEEEETTSCCSSSCCCEEE------------------------------ECCCHHHHTSCE--EEEEEEE-EETT
T ss_pred             -CeeEEEEEECCCCCCCCcceEEE------------------------------ecCCccCCCCCe--EEEEEEE-eCCC
Confidence             112589999886   42100000                              000001112333  4888998 9999


Q ss_pred             cEEEEec----CCCeEEEEEecCCe----EE--EEe--ecCCceee-----EEEecCCCCeEE-Eeec-C--CcEEEecC
Q 012712          356 EYVVSGS----DCGRIFIWKKKGGE----LI--RVI--EADRHVVN-----CIEPHPHSTVLA-SSGI-E--SDIKILTP  414 (458)
Q Consensus       356 ~~l~~~~----~dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-----~~~~s~~~~~l~-s~~~-d--~~i~iw~~  414 (458)
                      +.++...    .+..|++||+.+++    +.  ..+  ..|...+.     .++|+|||+.|+ ..+. +  ..|.+|++
T Consensus       272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred             eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence            9766543    33479999999887    22  222  44665554     789999999877 5553 3  46888899


Q ss_pred             CcccccccccccccEEEEEEecCCcEEEe-eec----CCceEEEEE
Q 012712          415 NAADRATLPTNIEQVCFSIYSADYWWSKS-QNF----SCSILLFEW  455 (458)
Q Consensus       415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~----d~~i~~w~~  455 (458)
                      .+++...+......+..+. ++|++.|+. ++.    .+...||..
T Consensus       352 ~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          352 DKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             TCSSCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             CCCceEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEE
Confidence            9888877777766676654 355765544 443    244566653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2.6e-22  Score=180.46  Aligned_cols=218  Identities=12%  Similarity=0.100  Sum_probs=150.1

Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC-CCCCCcCCCccccccccceeEEEeCCCCcEEE----Ee
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG-QPADYFCPPNLIGDEQVGITGLAFSDQSELLV----SY  279 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~----~~  279 (458)
                      .++.++++++ +.++++++.++ +++|+............. ....... ......+...|.+++|+|+|++|+    ++
T Consensus        38 ~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           38 RSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKV-QGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECC-CCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccC-ccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            4678999997 57888888887 899886543211000000 0000000 111122356799999999999999    56


Q ss_pred             c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcE
Q 012712          280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEY  357 (458)
Q Consensus       280 ~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~  357 (458)
                      + ++.|++||+.+........                           .........+.+|...  |.+++| +|+ +++
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~---------------------------~~~~~~~~~~~~h~~~--V~~v~~-~p~~~~~  164 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQ---------------------------KRPFAYHKLLKDAGGM--VIDMKW-NPTVPSM  164 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSS---------------------------CCCSEEEECCCSGGGS--EEEEEE-CSSCTTE
T ss_pred             CCCceEEEEEccccccCCcCC---------------------------cceeeeeeccCCCCCc--eEEEEE-CCCCCCE
Confidence            6 4479999987631000000                           0000113455667764  899999 998 889


Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc-------cccccEE
Q 012712          358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-------TNIEQVC  430 (458)
Q Consensus       358 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-------~~~~~v~  430 (458)
                      |++++.||+|++||+.++..+....+|...|.+++|+|+|++|++|+.||.|++||+.......+.       .|...+.
T Consensus       165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEE
T ss_pred             EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEE
Confidence            999999999999999999877777788999999999999999999999999999999832222222       2334799


Q ss_pred             EEEEecCCcEEEe-eecCCc------eEEEEE
Q 012712          431 FSIYSADYWWSKS-QNFSCS------ILLFEW  455 (458)
Q Consensus       431 ~~~~s~d~~~l~s-~~~d~~------i~~w~~  455 (458)
                      +++|++++.++++ .+.||.      +++|+.
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence            9999999988855 445543      788875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=4.1e-21  Score=169.74  Aligned_cols=274  Identities=12%  Similarity=0.074  Sum_probs=173.9

Q ss_pred             EEEEEcCC--CcEEEeecc--cccceeeeec-cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC-CCCccceeeecc
Q 012712          120 SIVTCAAD--GQVRHAQIL--ERGGVETKLL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRP  193 (458)
Q Consensus       120 ~l~s~~~d--g~i~vw~~~--~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~  193 (458)
                      .++.|+..  +.|.+|++.  +++....... ......+..++|+|++ ++|++++.+ .|.+|++. +++........ 
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-   80 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHP-   80 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEE-
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEee-
Confidence            34555542  467777664  3332211111 1233467889999999 567777777 99999997 66543322211 


Q ss_pred             cCCCCcceeecceEEEEECCCCCc--EEEEec-------------CCCeEEEEecCC-CccCCCccCCCCCCCcCCCccc
Q 012712          194 IDDRRNYMTVVNLNAIAIDPRNAN--LFAVAG-------------SDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       194 ~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~-------------~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                      .       . ..+..++|+|+ ++  +++++.             .++.+.+|++.. ++.....           ....
T Consensus        81 ~-------~-g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~-----------~~~~  140 (365)
T 1jof_A           81 I-------G-GHPRANDADTN-TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV-----------QNYE  140 (365)
T ss_dssp             C-------C-SSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE-----------EEEE
T ss_pred             c-------C-CCCccEEECCC-CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE-----------eeEE
Confidence            0       0 12345889998 56  355553             689999999974 3321100           0000


Q ss_pred             cccccceeEEEeCCCCcEEEEec--CCcEEEEEcc-CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712          258 GDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQD-MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ  334 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (458)
                      ..+...+.+++|+|+|++|+++.  ++.|++|++. +++.                                    ....
T Consensus       141 ~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~------------------------------------~~~~  184 (365)
T 1jof_A          141 YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV------------------------------------ELVG  184 (365)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE------------------------------------EEEE
T ss_pred             eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE------------------------------------EEee
Confidence            11345789999999999887765  4579999987 4311                                    1111


Q ss_pred             eec--CccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEec--CCeEE---EEee-------cCCc------eeeEEE-
Q 012712          335 VYK--GHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK--GGELI---RVIE-------ADRH------VVNCIE-  392 (458)
Q Consensus       335 ~~~--~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~---~~~~-------~~~~------~v~~~~-  392 (458)
                      .+.  .+..  .+..++| +|||++|++++. ++.|.+|++.  +++..   ..+.       +|..      .+..++ 
T Consensus       185 ~~~~~~~g~--~p~~~~~-spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  261 (365)
T 1jof_A          185 SVDAPDPGD--HPRWVAM-HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             EEECSSTTC--CEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred             eEecCCCCC--CCCEeEE-CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence            222  1122  2678888 999999987765 6899999875  46542   2222       1222      588999 


Q ss_pred             ecCCCCeEEEeecCC------cEEEecCC-cccccc----cccccccEEEEEEec---CCcEEEeeecC-CceEEEEE
Q 012712          393 PHPHSTVLASSGIES------DIKILTPN-AADRAT----LPTNIEQVCFSIYSA---DYWWSKSQNFS-CSILLFEW  455 (458)
Q Consensus       393 ~s~~~~~l~s~~~d~------~i~iw~~~-~~~~~~----~~~~~~~v~~~~~s~---d~~~l~s~~~d-~~i~~w~~  455 (458)
                      |+|||++|++++.+.      .|.+|++. +++...    ...+......++|+|   ||++|++++.+ +.|.+|++
T Consensus       262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            999999988765432      89999986 455432    222344567889999   89999988765 89999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.89  E-value=2.1e-19  Score=165.35  Aligned_cols=320  Identities=12%  Similarity=0.081  Sum_probs=220.9

Q ss_pred             cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc--cccceeeeeccc
Q 012712           71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL--ERGGVETKLLGK  148 (458)
Q Consensus        71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~  148 (458)
                      |.+.++++...++.|.++|..+++.+.++..  ...+..+.|+|  |++++++++.++.|.+||+.  +.+.+..  +..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~--i~~  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAE--IKI  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEE--EEC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEE--Eec
Confidence            4456777888899999999999998887743  34567999999  99999999999999999995  5554443  332


Q ss_pred             cccceEEEEEc----CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC--CCcceeecceEEEEECCCCCcEEEEe
Q 012712          149 HQGRAHKLAIE----PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       149 ~~~~v~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                       ......++|+    |+|+.++++...++.|.++|..+.+.+..+.......  ...| ....+..+..+++++.+++..
T Consensus       239 -G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~-p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          239 -GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-PEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             -CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE-SCCCEEEEEECSSSSEEEEEE
T ss_pred             -CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc-CCCceEEEEEcCCCCEEEEEe
Confidence             2345789999    6996666666677999999999988887765432110  0000 122577888899877777777


Q ss_pred             cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCC
Q 012712          223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPS  300 (458)
Q Consensus       223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~  300 (458)
                      ..+|.|.++|....+....            ..+  ........+.|+|+|++++++.  .+.|.++|+.+++.      
T Consensus       317 ~~~g~v~~vd~~~~~~~~v------------~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl------  376 (567)
T 1qks_A          317 KETGKILLVDYTDLNNLKT------------TEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL------  376 (567)
T ss_dssp             TTTTEEEEEETTCSSEEEE------------EEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE------
T ss_pred             cCCCeEEEEecCCCcccee------------eee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE------
Confidence            8889999999876431100            000  1123456789999999877665  56899999987421      


Q ss_pred             CCccccccccccCCCCccccCCCCCCcccccCceeec-----CccceeeeeEEEEecCCCcEEE-Eec-CCCeEEEEEec
Q 012712          301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-----GHRNCVTVKGVNFFGPKCEYVV-SGS-DCGRIFIWKKK  373 (458)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~s~~~~~l~-~~~-~dg~i~iwd~~  373 (458)
                                                      ...+.     .|..    ....|++|++..+. +.. .++.|.++|..
T Consensus       377 --------------------------------~~~i~vgg~~Phpg----~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          377 --------------------------------VAIEDTGGQTPHPG----RGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             --------------------------------EEEEECSSSSBCCT----TCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             --------------------------------EEEEeccCcCCCCc----cceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence                                            11111     1221    12223488755444 443 46899999998


Q ss_pred             C-------CeEEEEeecCCceeeEEEecCCCCeEEEeec-------CCcEEEecCCcc-----c----ccc------ccc
Q 012712          374 G-------GELIRVIEADRHVVNCIEPHPHSTVLASSGI-------ESDIKILTPNAA-----D----RAT------LPT  424 (458)
Q Consensus       374 ~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------d~~i~iw~~~~~-----~----~~~------~~~  424 (458)
                      +       .+.++++......-..+..+|++++|.+...       .+.|.++|+.+.     .    .+.      +..
T Consensus       421 ~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~  500 (567)
T 1qks_A          421 PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE  500 (567)
T ss_dssp             TTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred             CCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence            7       6788888765444456789999998887652       469999999876     2    111      112


Q ss_pred             ccccEEEEEEecCCcEEEeee-----cCCceEEEE
Q 012712          425 NIEQVCFSIYSADYWWSKSQN-----FSCSILLFE  454 (458)
Q Consensus       425 ~~~~v~~~~~s~d~~~l~s~~-----~d~~i~~w~  454 (458)
                      ...++..+.|+|+|+++..+.     .++.|.|+|
T Consensus       501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            245689999999997765543     368898887

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=2.1e-20  Score=165.19  Aligned_cols=262  Identities=9%  Similarity=0.027  Sum_probs=166.5

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECC-CcceeeeeccCCCcceeEEEEccCCCCeE--EEEEc-----------
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRS--IVTCA-----------  125 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--l~s~~-----------  125 (458)
                      +...+..++|+|||++|++++.+ .|.+|++. +++..........+...+++|+|  +++.  +++++           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC--CCCEEEEEEecCCcceecccee
Confidence            44567899999999999988887 89999997 67654332111112356689999  9994  45553           


Q ss_pred             --CCCcEEEeeccc-ccceeeeecc--ccccceEEEEEcCCCCeEEEEe-cCCCeEEEEeCC-CCCccceeeecccCCCC
Q 012712          126 --ADGQVRHAQILE-RGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLR-TGAATELFTCRPIDDRR  198 (458)
Q Consensus       126 --~dg~i~vw~~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~  198 (458)
                        .+|.+.+|++.. ++........  .+...+.+++|+|+++ .++++ ..++.|++||+. +++........ ...  
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~--  190 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVD-APD--  190 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSS--
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCC--
Confidence              689999999974 4332221111  2456789999999995 45544 446899999998 66543211110 000  


Q ss_pred             cceeecceEEEEECCCCCcEEEEec-CCCeEEEEecCC--CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712          199 NYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRK--YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL  275 (458)
Q Consensus       199 ~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  275 (458)
                         +...+..++|+|+ ++++++++ .++.|.+|++..  ++..                      .....+...|.+  
T Consensus       191 ---~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~----------------------~~~~~~~~~~~~--  242 (365)
T 1jof_A          191 ---PGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPV----------------------YTHHSFPLIPPG--  242 (365)
T ss_dssp             ---TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEE----------------------EEEEEEESSCTT--
T ss_pred             ---CCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEE----------------------EccceEEcCCCC--
Confidence               1224788899998 56666555 467888887653  1100                      000001101100  


Q ss_pred             EEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc----eeeeeEEE-E
Q 012712          276 LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN----CVTVKGVN-F  350 (458)
Q Consensus       276 l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~-~  350 (458)
                                                                                  +.++..    ...+..++ |
T Consensus       243 ------------------------------------------------------------~~g~~~~~~~~~~~~~i~~~  262 (365)
T 1jof_A          243 ------------------------------------------------------------IPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             ------------------------------------------------------------CCCBCTTTSSBSEEEEEEEE
T ss_pred             ------------------------------------------------------------cCCcccccccccccccEEEE
Confidence                                                                        001110    01267888 7


Q ss_pred             ecCCCcEEEEecCC-C-----eEEEEEec-CCeEEE---EeecCCceeeEEEecC---CCCeEEEeecC-CcEEEecCCc
Q 012712          351 FGPKCEYVVSGSDC-G-----RIFIWKKK-GGELIR---VIEADRHVVNCIEPHP---HSTVLASSGIE-SDIKILTPNA  416 (458)
Q Consensus       351 ~s~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~s~~~d-~~i~iw~~~~  416 (458)
                       +|||++|++++.+ +     +|.+|++. +++...   ....+...+..++|+|   ||++|++++.+ +.|.+|+++.
T Consensus       263 -spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          263 -TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             -CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             -CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence             9999998876543 2     89999996 566543   2333555678899999   89999988764 8999999876


Q ss_pred             c
Q 012712          417 A  417 (458)
Q Consensus       417 ~  417 (458)
                      .
T Consensus       342 ~  342 (365)
T 1jof_A          342 E  342 (365)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.88  E-value=4.6e-19  Score=163.13  Aligned_cols=335  Identities=13%  Similarity=0.051  Sum_probs=225.3

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      +.+.++++...++.|.++|..+++.+.+                     +.. ...+..+.|+|||++|++++.|+.|.+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~---------------------i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~v  222 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTV---------------------LDT-GYAVHISRLSASGRYLFVIGRDGKVNM  222 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEE---------------------EEC-SSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEE---------------------EeC-CCCccceEECCCCCEEEEEcCCCeEEE
Confidence            3455677888899999999999887743                     332 235668999999999999999999999


Q ss_pred             EECC--CcceeeeeccCCCcceeEEEEc----cCCCCeEEEEEcC-CCcEEEeecccccceeeeeccc--------ccc-
Q 012712           88 WDWK--TERVKLSFHSGHNDNVFQAKIM----PFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGK--------HQG-  151 (458)
Q Consensus        88 wd~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~--------~~~-  151 (458)
                      ||+.  +++.+.++..  ......++|+    |  ||+++++++. ++.|.++|..+.+.+......+        |.. 
T Consensus       223 iD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~  298 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKI--GSEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP  298 (567)
T ss_dssp             EETTSSSCCEEEEEEC--CSEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred             EECCCCCCcEeEEEec--CCCCceeEEccccCC--CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence            9995  7777777633  3346799999    8  9988887765 5899999998877765533322        222 


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      .+..+..+++++.+++....+|.|.++|....+........         .......+.|+|++..++++...++.|.++
T Consensus       299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~---------~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi  369 (567)
T 1qks_A          299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---------AERFLHDGGLDGSHRYFITAANARNKLVVI  369 (567)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---------CCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee---------ccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence            57788999988777888888899999998876533322211         112356789999854444555578899999


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      |+.++++......+          -...|.+.-..+ +.|+ +.++++..  ++.|.++|..+.+....           
T Consensus       370 D~~t~kl~~~i~vg----------g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~-----------  427 (567)
T 1qks_A          370 DTKEGKLVAIEDTG----------GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN-----------  427 (567)
T ss_dssp             ETTTTEEEEEEECS----------SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT-----------
T ss_pred             ECCCCcEEEEEecc----------CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc-----------
Confidence            99988754332110          001122111122 5787 45555553  46899999876321100           


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-------CCeEEEEEecCC-----e
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-------CGRIFIWKKKGG-----E  376 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~-----~  376 (458)
                                          ..+.++.+......  -..+.. +|++++|.+...       .++|.++|+.+.     .
T Consensus       428 --------------------~~kvv~~i~~~g~g--~~~i~~-~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~  484 (567)
T 1qks_A          428 --------------------AWKILDSFPALGGG--SLFIKT-HPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD  484 (567)
T ss_dssp             --------------------BTSEEEEEECSCSC--CCCEEC-CTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred             --------------------cCEEEEEEecCCCC--CEEEEe-CCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence                                02233444433221  123445 999999987653       359999999877     2


Q ss_pred             E-EEEee--------cCCceeeEEEecCCCCeEEEee-----cCCcEEEecCCccccccc
Q 012712          377 L-IRVIE--------ADRHVVNCIEPHPHSTVLASSG-----IESDIKILTPNAADRATL  422 (458)
Q Consensus       377 ~-~~~~~--------~~~~~v~~~~~s~~~~~l~s~~-----~d~~i~iw~~~~~~~~~~  422 (458)
                      . ...+.        .....+..+.|+|+|+.+..+.     .++.|.|+|..+.++...
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV  544 (567)
T ss_dssp             CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence            1 13332        1234688999999999776653     379999999998876543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.88  E-value=7.4e-21  Score=170.55  Aligned_cols=295  Identities=9%  Similarity=-0.017  Sum_probs=190.3

Q ss_pred             CCCCCCCCCeEEEeeCC---CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCc-eEEEEEecCCCEEEE
Q 012712            3 DASNNNNNKRARTSVDK---ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGC-VNTVSFNTDGDILIS   78 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d---~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s   78 (458)
                      .+.++|+|++|+.....   ..|.+||+.+++..                      .+..+... ...+.|+|||++|+.
T Consensus        40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------~l~~~~~~~~~~~~~spdg~~l~~   97 (396)
T 3c5m_A           40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------QLTEGKGDNTFGGFISTDERAFFY   97 (396)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------ECCCSSCBCTTTCEECTTSSEEEE
T ss_pred             cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------EeecCCCCccccceECCCCCEEEE
Confidence            45789999998877543   36888899876643                      12223333 334789999999999


Q ss_pred             ecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEE
Q 012712           79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  158 (458)
                      ++.++.|.+||+.+++..... ..+..      |+|  +++.|+..+.+....+|..                   .+.|
T Consensus        98 ~~~~~~l~~~d~~~~~~~~~~-~~~~~------~~~--~g~~l~~~~~~~~~~~~~~-------------------~~~~  149 (396)
T 3c5m_A           98 VKNELNLMKVDLETLEEQVIY-TVDEE------WKG--YGTWVANSDCTKLVGIEIL-------------------KRDW  149 (396)
T ss_dssp             EETTTEEEEEETTTCCEEEEE-ECCTT------EEE--EEEEEECTTSSEEEEEEEE-------------------GGGC
T ss_pred             EEcCCcEEEEECCCCCcEEEE-ecccc------cCC--CCCEEEeccCCcccccccc-------------------cccc
Confidence            999899999999888764443 33332      778  8888888777655554431                   2346


Q ss_pred             cCCCCeEEEEe-----cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC-CCCcEEEEecCC------C
Q 012712          159 EPGSPHVFYTC-----GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP-RNANLFAVAGSD------E  226 (458)
Q Consensus       159 ~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g  226 (458)
                      +|++.. ++..     ..+..|.+||+.+++......           ....+..+.|+| + +..|+..+.+      .
T Consensus       150 spdg~~-~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-----------~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~  216 (396)
T 3c5m_A          150 QPLTSW-EKFAEFYHTNPTCRLIKVDIETGELEVIHQ-----------DTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDA  216 (396)
T ss_dssp             CCCCSH-HHHHHHHHTCCCEEEEEEETTTCCEEEEEE-----------ESSCEEEEEEETTE-EEEEEEEECSCSSSCSC
T ss_pred             CCCCcc-eeeeeeccCCCcceEEEEECCCCcEEeecc-----------CCcccccceECCCC-CCEEEEEecCCCCCCCc
Confidence            788843 3333     456789999999887654432           333578899999 5 5655554433      3


Q ss_pred             eEEEEecCCCccCCCccCCCCCCCcCCCcccccc-ccceeEEEeCCCCcEEEEec-C---Cc--EEEEEccCCCCCCCCC
Q 012712          227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELLVSYN-D---EF--IYLFTQDMGLGPNPPP  299 (458)
Q Consensus       227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~---~~--i~i~~~~~~~~~~~~~  299 (458)
                      .|.+||+...+.               ..+.... ...+..++|+|+|+.|+..+ +   ..  |++||+.++..     
T Consensus       217 ~l~~~d~~~~~~---------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-----  276 (396)
T 3c5m_A          217 RMWLVNEDGSNV---------------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-----  276 (396)
T ss_dssp             CCEEEETTSCCC---------------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-----
T ss_pred             eEEEEECCCCce---------------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-----
Confidence            688888865431               1111111 23578899999999776654 2   13  99999876321     


Q ss_pred             CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEec----------------
Q 012712          300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGS----------------  362 (458)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~----------------  362 (458)
                                                        ..+.....   .. +.| +| ||+++++++                
T Consensus       277 ----------------------------------~~l~~~~~---~~-~~~-s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          277 ----------------------------------EEVMVMPP---CS-HLM-SNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             ----------------------------------EEEEECCS---EE-EEE-ECSSSSEEEEEECCC----------CCC
T ss_pred             ----------------------------------EEeeeCCC---CC-CCc-cCCCCceEEEecCCcceeeccccccccC
Confidence                                              11111111   12 666 88 999888754                


Q ss_pred             CCCeEEEEEecCCeEEEEeecCCc-----------eeeEEEecCCCCeEEEeec-CCcEEEec--CCccccc
Q 012712          363 DCGRIFIWKKKGGELIRVIEADRH-----------VVNCIEPHPHSTVLASSGI-ESDIKILT--PNAADRA  420 (458)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-d~~i~iw~--~~~~~~~  420 (458)
                      .+..|++||+.+++.. .+..+..           .+..++|+|||+.|+.++. ++...||.  +.+++..
T Consensus       318 ~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH  388 (396)
T ss_dssp             CCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred             CCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence            3478999999887653 4444443           2567899999998887664 55555554  4454443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.87  E-value=1.1e-20  Score=180.96  Aligned_cols=296  Identities=11%  Similarity=0.042  Sum_probs=189.0

Q ss_pred             EeecCCCceEEEEEecCCCEEEEe--cCCCeEEEEECCCcceeeeeccCCCccee---------EEEEc--cCCCCeE-E
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISG--SDDRRVILWDWKTERVKLSFHSGHNDNVF---------QAKIM--PFTDDRS-I  121 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~---------~~~~~--~~~~~~~-l  121 (458)
                      .+.+|...|..++|++++-++++.  +.++...||....+.....+ ..|...+.         ...|+  |  |++. |
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SP--Dg~~~l   94 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRP--AGGPLL   94 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCS--SSSCEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeec--CCCeEE
Confidence            356799999999999887777777  66889999986444444444 45655655         56666  8  9998 7


Q ss_pred             EEEcC-CCcEEEeecc--c-ccceeeeeccc-----cccceEEEEEcCCCCeEEEEecCC----------CeEEEEeCCC
Q 012712          122 VTCAA-DGQVRHAQIL--E-RGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGED----------GLVQHFDLRT  182 (458)
Q Consensus       122 ~s~~~-dg~i~vw~~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~  182 (458)
                      +.++. +..|.++++.  . +. ...  +..     |...+..++|+|+| +.|++++.+          ..|++||+.+
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~--l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRP--LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEE--CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEe--ccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            76654 5667777765  2 33 222  444     66788999999999 566666665          5899999987


Q ss_pred             ------CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC--------CeEEEEecC-CCccCCCccCCCC
Q 012712          183 ------GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIR-KYKWDGSTDFGQP  247 (458)
Q Consensus       183 ------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~~~~~~~~  247 (458)
                            ++.......          +...+..++|+|| +++|+.++.+        ..|++||+. +++...       
T Consensus       171 ~~~~~~~~~~~l~~~----------~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~-------  232 (662)
T 3azo_A          171 SAAADRSAVRELSDD----------AHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD-------  232 (662)
T ss_dssp             TTTTCGGGSEESSCS----------CSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE-------
T ss_pred             CccccCCceeEEEec----------CCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc-------
Confidence                  443222100          2235677899998 6777766644        379999998 441100       


Q ss_pred             CCCcCCCccccccccceeEEEeCCCCcEEEEecC-C--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                           ...+...+...+..++|+|||++++++.. +  .|++|++.++.....                           
T Consensus       233 -----~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l---------------------------  280 (662)
T 3azo_A          233 -----TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL---------------------------  280 (662)
T ss_dssp             -----EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES---------------------------
T ss_pred             -----cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec---------------------------
Confidence                 12233334567899999999997766663 4  466666544321100                           


Q ss_pred             CCcccccCceeecCccc-----e-eeeeEEEEecCCCcEEEEecCCCeEEEEEe--cCCeEEEEeecCCceeeEE-EecC
Q 012712          325 ANTDVRIAPQVYKGHRN-----C-VTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELIRVIEADRHVVNCI-EPHP  395 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-----~-~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~-~~s~  395 (458)
                                 ...+..     . ..+..++| +|+++++++++. +.++||.+  .+++ +..+..|...+..+ ++++
T Consensus       281 -----------~~~~~~~~~p~w~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~  346 (662)
T 3azo_A          281 -----------CRREEEFAGPLWTPGMRWFAP-LANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG  346 (662)
T ss_dssp             -----------SCCSSBSSCCCCSTTCCSEEE-CTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET
T ss_pred             -----------ccccccccCccccccCceEeE-eCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCC
Confidence                       000000     0 00345677 899999999998 99999944  4454 67787787778777 5544


Q ss_pred             CCCeEEEeecCC--cEEEecCCccccccc
Q 012712          396 HSTVLASSGIES--DIKILTPNAADRATL  422 (458)
Q Consensus       396 ~~~~l~s~~~d~--~i~iw~~~~~~~~~~  422 (458)
                      +.-++++++.+.  .|.++++.+++...+
T Consensus       347 ~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          347 TRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             TEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             CEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            333444555554  455556666655433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.87  E-value=8.1e-20  Score=175.00  Aligned_cols=290  Identities=11%  Similarity=0.057  Sum_probs=189.7

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEE--cCCCcEEEeecccccceeeeeccccccceE---------EEEEc--CCCCe-EE
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTC--AADGQVRHAQILERGGVETKLLGKHQGRAH---------KLAIE--PGSPH-VF  166 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~l  166 (458)
                      .+|...+..++|++  +.-++++.  +.++...||....+.....  +..+...+.         ...|+  ||+.. ++
T Consensus        20 ~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           20 ASRSGRPACVGAVG--DEVWWVAPRPAEAGRATLVRRRADGAEES--ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHTCSCCEEEEEET--TEEEEEEEETTTTTEEEEEEECTTSCEEE--SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             hhcCCccceeEEcC--CeEEEEecCcccCCcEEEEEECCCCCcce--eCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            56888999999998  87777776  6688899999744443333  555655555         55565  99965 45


Q ss_pred             EEecCCCeEEEEeCC--C-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC----------CeEEEEec
Q 012712          167 YTCGEDGLVQHFDLR--T-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----------EYTRLYDI  233 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~i~d~  233 (458)
                      ++...+..|.++++.  . ++.. .+.....   ..  +...+..++|+|| ++.|++++.+          ..|++||+
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~---~~--~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~i~~~~~  168 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPR-PLTPVSA---VG--GGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRRFLAAVPL  168 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCE-ECSCCCC---ST--TCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred             EEECCCCeEEEEcCCCCCCCCCE-eccCCcc---CC--CCccccCcEECCC-CCEEEEEEecccCCCCCCceeEEEEEEC
Confidence            555456778888776  3 4322 2221000   00  1235789999998 6788877766          57999999


Q ss_pred             CC------CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC--------cEEEEEcc-CCCCCCC
Q 012712          234 RK------YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE--------FIYLFTQD-MGLGPNP  297 (458)
Q Consensus       234 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--------~i~i~~~~-~~~~~~~  297 (458)
                      .+      ++.               ..+...+...+..++|+|||+.|+..+ +.        .|++||+. ++..   
T Consensus       169 ~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~---  230 (662)
T 3azo_A          169 DGSAAADRSAV---------------RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF---  230 (662)
T ss_dssp             TSTTTTCGGGS---------------EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE---
T ss_pred             CCCccccCCce---------------eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc---
Confidence            87      331               111102345678899999999998765 32        59999987 3200   


Q ss_pred             CCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC--eEEEEEecCC
Q 012712          298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGG  375 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~  375 (458)
                                                      ........++..  .+..+.| +|||+++++++.++  .|++||+.++
T Consensus       231 --------------------------------~~~~~l~~~~~~--~~~~~~~-spdg~l~~~~~~~~~~~l~~~~~~~~  275 (662)
T 3azo_A          231 --------------------------------ADTRTLLGGPEE--AIAQAEW-APDGSLIVATDRTGWWNLHRVDPATG  275 (662)
T ss_dssp             --------------------------------EEEEEEEEETTB--CEEEEEE-CTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred             --------------------------------cccEEeCCCCCc--eEcceEE-CCCCeEEEEECCCCCeEEEEEECCCC
Confidence                                            011122222233  3778888 99999888888888  6666776666


Q ss_pred             eEEEEeecCCce--------eeEEEecCCCCeEEEeecCCcEEEe--cCCcccccccccccccEEEE-EEecCCcEEEee
Q 012712          376 ELIRVIEADRHV--------VNCIEPHPHSTVLASSGIESDIKIL--TPNAADRATLPTNIEQVCFS-IYSADYWWSKSQ  444 (458)
Q Consensus       376 ~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~d~~i~iw--~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s~  444 (458)
                      +.......+...        +..++|+|+++++++++. +.++||  ++.+++...+..+...+..+ +++++..+++++
T Consensus       276 ~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~  354 (662)
T 3azo_A          276 AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAA  354 (662)
T ss_dssp             CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEE
T ss_pred             ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEc
Confidence            654444433322        567899999999999998 999999  66666666777776677766 444444555566


Q ss_pred             ecCCceEEEEE
Q 012712          445 NFSCSILLFEW  455 (458)
Q Consensus       445 ~~d~~i~~w~~  455 (458)
                      +.+....+|.+
T Consensus       355 ~~~~~~~i~~~  365 (662)
T 3azo_A          355 SPRTAYEVVEL  365 (662)
T ss_dssp             ETTEEEEEEEE
T ss_pred             CCCCCCEEEEE
Confidence            77766667654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=1.2e-18  Score=151.31  Aligned_cols=264  Identities=14%  Similarity=0.112  Sum_probs=174.2

Q ss_pred             CCceEEEEEecCCCEEEEecCC------------------------CeEEEEECCCcceeeeeccCCCcceeEEEEccCC
Q 012712           61 RGCVNTVSFNTDGDILISGSDD------------------------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT  116 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  116 (458)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++....+..++-.....++++|  
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~--  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT--  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence            4679999999999999888777                        47999999888887666445556789999999  


Q ss_pred             CCeEEEEEcCCCcEEEeeccccc-ceeeeec-------cccccceEEEEEcC-CCCeEEEEec-CCCeEEEEeCCCCCcc
Q 012712          117 DDRSIVTCAADGQVRHAQILERG-GVETKLL-------GKHQGRAHKLAIEP-GSPHVFYTCG-EDGLVQHFDLRTGAAT  186 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~-------~~~~~~v~~~~~~~-~~~~~l~s~~-~dg~i~iwd~~~~~~~  186 (458)
                      +++++++...++.|++|+..... .+....-       ..+......++++| ++ .++++.+ .++.|++|| ..++..
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEEC-TTSCEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEc-CCCCEE
Confidence            99988888889999999975442 2222100       23445688999999 56 7777776 689999999 455554


Q ss_pred             ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712          187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG  266 (458)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (458)
                      ..+................+..++++|+++.++++...++.|++||..+++......             ...+...+..
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~-------------~~~~~~~~~~  245 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK-------------HASFGRNVFA  245 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------------CTTTTTCEEE
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe-------------ccccCCCcce
Confidence            443211100000000122356777777645666666667777777766443211100             0001112223


Q ss_pred             EEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeee
Q 012712          267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK  346 (458)
Q Consensus       267 ~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  346 (458)
                      ++++| +..                                                                       
T Consensus       246 ~~~~p-g~~-----------------------------------------------------------------------  253 (329)
T 3fvz_A          246 ISYIP-GFL-----------------------------------------------------------------------  253 (329)
T ss_dssp             EEEET-TEE-----------------------------------------------------------------------
T ss_pred             eeecC-CEE-----------------------------------------------------------------------
Confidence            33333 110                                                                       


Q ss_pred             EEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee---cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       347 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                         + ..+|+..++...+.+|++|+..+++.+..+.   ++...+..++++|+|.++++...++.|++|++...
T Consensus       254 ---~-~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          254 ---F-AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             ---E-EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             ---E-EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence               0 1134434444556789999999999988873   56667899999999988888888999999998653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=2.6e-18  Score=146.47  Aligned_cols=244  Identities=12%  Similarity=0.159  Sum_probs=168.8

Q ss_pred             ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC-CCCCcEEEEecC-C
Q 012712          148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNANLFAVAGS-D  225 (458)
Q Consensus       148 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~-d  225 (458)
                      ++-..+.+++++|++ .++++...++.|.+||.. ++....+.....  ..+  +...+..++++ ++ ++++++... +
T Consensus        27 g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~--~~~--~~~~p~~i~~~~~~-g~l~v~~~~~~   99 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGK--RDS--QLLYPNRVAVVRNS-GDIIVTERSPT   99 (286)
T ss_dssp             TCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSS--STT--CBSSEEEEEEETTT-TEEEEEECGGG
T ss_pred             CccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCC--Ccc--cccCceEEEEEcCC-CeEEEEcCCCC
Confidence            344668899999998 678888889999999987 444433321110  001  22357889994 55 566666543 7


Q ss_pred             CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcc
Q 012712          226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVS  304 (458)
Q Consensus       226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~  304 (458)
                      +.|.+||. +++....              +...+...+..++++|+|+++++.. ++.|++|+....            
T Consensus       100 ~~i~~~d~-~g~~~~~--------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------------  152 (286)
T 1q7f_A          100 HQIQIYNQ-YGQFVRK--------------FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------------  152 (286)
T ss_dssp             CEEEEECT-TSCEEEE--------------ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------------
T ss_pred             CEEEEECC-CCcEEEE--------------ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------------
Confidence            89999994 4332111              1112234678999999999888766 457999985431            


Q ss_pred             ccccccccCCCCccccCCCCCCcccccCceeec--CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712          305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE  382 (458)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  382 (458)
                                                 ....+.  .+..  .+..+++ +++|+++++...++.|++||. +++.+..+.
T Consensus       153 ---------------------------~~~~~~~~~~~~--~p~~i~~-~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~  201 (286)
T 1q7f_A          153 ---------------------------VLHKFGCSKHLE--FPNGVVV-NDKQEIFISDNRAHCVKVFNY-EGQYLRQIG  201 (286)
T ss_dssp             ---------------------------EEEEEECTTTCS--SEEEEEE-CSSSEEEEEEGGGTEEEEEET-TCCEEEEES
T ss_pred             ---------------------------EEEEeCCCCccC--CcEEEEE-CCCCCEEEEECCCCEEEEEcC-CCCEEEEEc
Confidence                                       112221  1212  3678888 999998888888999999997 566666665


Q ss_pred             cC--CceeeEEEecCCCCeEEEeecCC-cEEEecCCccccccccccc--ccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712          383 AD--RHVVNCIEPHPHSTVLASSGIES-DIKILTPNAADRATLPTNI--EQVCFSIYSADYWWSKSQNFSCSILLFEWLV  457 (458)
Q Consensus       383 ~~--~~~v~~~~~s~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~  457 (458)
                      .+  ...+..++++|+|+++++...++ .|.+|+........+..+.  ..+.+++++|+|+++++ +.|+.|++|++..
T Consensus       202 ~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          202 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            43  35688999999999888887776 9999997654444443332  24789999999988777 6799999999853

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.84  E-value=1.5e-17  Score=145.21  Aligned_cols=276  Identities=14%  Similarity=0.124  Sum_probs=182.7

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      ..+.|++++..++..+.++.++.|.   ++..                     ..+..+...+.+++|+|+|++++++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~~~~~~~~~~~~~g~l~~~~~~   64 (333)
T 2dg1_A            9 PTLFYSGKSNSAVPIISESELQTIT---AEPW---------------------LEISKKGLQLEGLNFDRQGQLFLLDVF   64 (333)
T ss_dssp             CBCCSCGGGGCSSCCCCGGGSCEEE---CEEE---------------------EEEESSCCCEEEEEECTTSCEEEEETT
T ss_pred             ceeeecCCccceeEEeecccCcccc---ccee---------------------EEEeccCccccCcEECCCCCEEEEECC
Confidence            4567888888777777788888882   2222                     345667777899999999998888888


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC----CcEEEeecccccceeeeeccccccceEEEE
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLLGKHQGRAHKLA  157 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~  157 (458)
                      ++.|.+||.++++..... ..+...+.+++++|  +++++++...+    +.|.+||..++..........+...+..++
T Consensus        65 ~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~--dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~  141 (333)
T 2dg1_A           65 EGNIFKINPETKEIKRPF-VSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV  141 (333)
T ss_dssp             TCEEEEECTTTCCEEEEE-ECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE
T ss_pred             CCEEEEEeCCCCcEEEEe-eCCCCCcceEEECC--CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE
Confidence            999999999887754433 34667899999999  99888877766    689999987765432211122445789999


Q ss_pred             EcCCCCeEEEEecC------CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          158 IEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       158 ~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      ++|++ .++++...      .+.|..+|..+++......           ....+..++|+|++..++++...++.|.+|
T Consensus       142 ~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~  209 (333)
T 2dg1_A          142 FDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------NISVANGIALSTDEKVLWVTETTANRLHRI  209 (333)
T ss_dssp             ECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             ECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEEeec-----------CCCcccceEECCCCCEEEEEeCCCCeEEEE
Confidence            99998 56665543      3556666665544322211           122467788888732344455567788888


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      |+.+...                        .+..+.  +   .+                                   
T Consensus       210 d~~~~g~------------------------~~~~~~--~---~~-----------------------------------  225 (333)
T 2dg1_A          210 ALEDDGV------------------------TIQPFG--A---TI-----------------------------------  225 (333)
T ss_dssp             EECTTSS------------------------SEEEEE--E---EE-----------------------------------
T ss_pred             EecCCCc------------------------Cccccc--c---eE-----------------------------------
Confidence            8753210                        000000  0   00                                   


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc-----
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH-----  386 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----  386 (458)
                                           ...+.++.   .+..+++ +++|+++++...++.|.+||. +++.+..+..+..     
T Consensus       226 ---------------------~~~~~~~~---~~~~i~~-d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~  279 (333)
T 2dg1_A          226 ---------------------PYYFTGHE---GPDSCCI-DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM  279 (333)
T ss_dssp             ---------------------EEECCSSS---EEEEEEE-BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred             ---------------------EEecCCCC---CCCceEE-CCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccc
Confidence                                 00011111   2566777 999998887777899999998 5777777765443     


Q ss_pred             -eeeEEEecCCCCeEEEeecC
Q 012712          387 -VVNCIEPHPHSTVLASSGIE  406 (458)
Q Consensus       387 -~v~~~~~s~~~~~l~s~~~d  406 (458)
                       .+.+++|+||++.|+.++.+
T Consensus       280 ~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          280 LRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CBCCEEEECTTSCEEEEEEEC
T ss_pred             cCcceEEECCCCCEEEEEeCc
Confidence             68999999998777655554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1.8e-17  Score=141.28  Aligned_cols=245  Identities=11%  Similarity=0.101  Sum_probs=169.8

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec----cccccceEEEEE-cCCCCeEEEEecC-CCeE
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL----GKHQGRAHKLAI-EPGSPHVFYTCGE-DGLV  175 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~-~~~~~~~l~s~~~-dg~i  175 (458)
                      ++-..+.+++++|  +++++++...++.|.+||.. ++.......    ..+...+..+++ .+++ .++++... ++.|
T Consensus        27 g~~~~p~~v~~~~--~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNA--QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECT--TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEE
T ss_pred             CccCCCceEEECC--CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEE
Confidence            4556789999999  99988888889999999976 443332111    134457889999 4666 66666643 7899


Q ss_pred             EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712          176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN  255 (458)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  255 (458)
                      .+|| .+++....+...         ....+.+++++|+ ++++++...++.|.+||..... ....             
T Consensus       103 ~~~d-~~g~~~~~~~~~---------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~-~~~~-------------  157 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGAT---------ILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQNGNV-LHKF-------------  157 (286)
T ss_dssp             EEEC-TTSCEEEEECTT---------TCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCE-EEEE-------------
T ss_pred             EEEC-CCCcEEEEecCc---------cCCCceEEEEeCC-CCEEEEECCCCEEEEEcCCCCE-EEEe-------------
Confidence            9999 555554443211         1225789999998 5777777788999999965321 1110             


Q ss_pred             cccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712          256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ  334 (458)
Q Consensus       256 ~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (458)
                      ....+...+..++++|+|+++++.. ++.|++|+....                                       ...
T Consensus       158 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---------------------------------------~~~  198 (286)
T 1q7f_A          158 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---------------------------------------YLR  198 (286)
T ss_dssp             ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---------------------------------------EEE
T ss_pred             CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---------------------------------------EEE
Confidence            0012234678999999999888766 568999997431                                       122


Q ss_pred             eecCccceeeeeEEEEecCCCcEEEEecCCC-eEEEEEecCCeEEEEeecCCc--eeeEEEecCCCCeEEEeecCCcEEE
Q 012712          335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKI  411 (458)
Q Consensus       335 ~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~i  411 (458)
                      .+..+.....+..+++ +++|+++++...++ .|++|+. +++.+..+..+..  .+.+++++|+|+++++ +.|++|++
T Consensus       199 ~~~~~g~~~~p~~i~~-d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v  275 (286)
T 1q7f_A          199 QIGGEGITNYPIGVGI-NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYI  275 (286)
T ss_dssp             EESCTTTSCSEEEEEE-CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEE
T ss_pred             EEccCCccCCCcEEEE-CCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEE
Confidence            2222211113678888 99999888887776 9999995 6777777765543  4779999999987777 57999999


Q ss_pred             ecCCcc
Q 012712          412 LTPNAA  417 (458)
Q Consensus       412 w~~~~~  417 (458)
                      |++...
T Consensus       276 ~~~~~~  281 (286)
T 1q7f_A          276 YRYVQL  281 (286)
T ss_dssp             EECSCC
T ss_pred             EEcccc
Confidence            997653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.83  E-value=5.3e-18  Score=149.03  Aligned_cols=268  Identities=13%  Similarity=0.146  Sum_probs=172.3

Q ss_pred             CceEEEEEecCCCEEEEec---------CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---C-
Q 012712           62 GCVNTVSFNTDGDILISGS---------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G-  128 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g-  128 (458)
                      ..+..+++  ||++++...         .++.|.+||+.+++.. .+     ..+..++|+|  ||+.|+.++.+   + 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-----~~~~~~~~Sp--Dg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-----ENATMPRISP--DGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-----ESCEEEEECT--TSSEEEEEEEETTTTE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-----ccCCCeEECC--CCCEEEEEEeccCCCc
Confidence            45677777  888887642         2568999999887653 22     5688999999  99999987754   3 


Q ss_pred             -cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC---------------------------CCeEEEEeC
Q 012712          129 -QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---------------------------DGLVQHFDL  180 (458)
Q Consensus       129 -~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------------------dg~i~iwd~  180 (458)
                       .|.+|++.+++....   ..+.. +..++|+|++.. |+.++.                           ...|.+||+
T Consensus        85 ~~l~~~~~~~g~~~~l---~~~~~-~~~~~wspdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           85 SEIWVADLETLSSKKI---LEAKN-IRSLEWNEDSRK-LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             EEEEEEETTTTEEEEE---EEESE-EEEEEECTTSSE-EEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             ceEEEEECCCCceEEE---EcCCC-ccceeECCCCCE-EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence             377778876554332   22334 899999999954 454442                           257999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC-------eEEEEecCCCccCCCccCCCCCCCcCC
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-------YTRLYDIRKYKWDGSTDFGQPADYFCP  253 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~  253 (458)
                      .+++....+..           . .+..++|+|+ + +++++..++       ...+|.+.+++.               
T Consensus       160 ~~~~~~~~l~~-----------~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---------------  210 (347)
T 2gop_A          160 ESEEVIEEFEK-----------P-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIYIWEDGKE---------------  210 (347)
T ss_dssp             TTTEEEEEEEE-----------E-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEEEEETTEE---------------
T ss_pred             CCCeEEeeecC-----------C-CcccccCCCC-e-EEEEEecccccccccccccEEEeCCCce---------------
Confidence            88765333331           1 4678899998 5 777665432       334444433321               


Q ss_pred             CccccccccceeEEEeCCCCcEEEEec-CC--------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          254 PNLIGDEQVGITGLAFSDQSELLVSYN-DE--------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~--------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                      ..+.. + ..+..+  +|+|+.|+..+ ++        .|++||  ++                                
T Consensus       211 ~~l~~-~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--------------------------------  252 (347)
T 2gop_A          211 EKMFE-K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK--------------------------------  252 (347)
T ss_dssp             EEEEE-E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--------------------------------
T ss_pred             EEecc-C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--------------------------------
Confidence            11111 2 334443  89999887665 21        477776  31                                


Q ss_pred             CCcccccCceeecCccceeeeeE-EEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712          325 ANTDVRIAPQVYKGHRNCVTVKG-VNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS  403 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  403 (458)
                            ........+..  .+.. +.| + |+ ++++++.++.++|| +.+++... +..+...|.+++|+|  .+++++
T Consensus       253 ------~~~~l~~~~~~--~~~~~~~~-s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~  317 (347)
T 2gop_A          253 ------EVMGILDEVDR--GVGQAKIK-D-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLK  317 (347)
T ss_dssp             ------CEEESSTTCCS--EEEEEEEE-T-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEE
T ss_pred             ------ceEeccccCCc--ccCCccEE-c-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEE
Confidence                  11122223333  2555 777 8 88 88899999999999 88666544 444577899999999  677777


Q ss_pred             ecCCcE-EEecCCcccccccccccc
Q 012712          404 GIESDI-KILTPNAADRATLPTNIE  427 (458)
Q Consensus       404 ~~d~~i-~iw~~~~~~~~~~~~~~~  427 (458)
                      +.++.. .||.+. ++...+..+..
T Consensus       318 ~~~~~~~~l~~~~-g~~~~lt~~n~  341 (347)
T 2gop_A          318 ETATRLRELFTWD-GEEKQLTDYND  341 (347)
T ss_dssp             ECSSSCCEEEEES-SSEEECCCTTS
T ss_pred             cCCCChHHheEeC-CcEEEeccccH
Confidence            776654 777665 55445555443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1e-17  Score=145.55  Aligned_cols=248  Identities=13%  Similarity=0.085  Sum_probs=174.6

Q ss_pred             ccceEEEEEcCCCCeEEEEecCC------------------------CeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          150 QGRAHKLAIEPGSPHVFYTCGED------------------------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       150 ~~~v~~~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      -..+.+++++|+| +++++...+                        +.|.+||..+++....+...         ....
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------~~~~   92 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN---------LFYL   92 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT---------TCSS
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC---------ccCC
Confidence            3578999999999 677777666                        47999999888765433211         2225


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCc-cCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec--C
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN--D  281 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~  281 (458)
                      +..++++|+ ++++++...++.|++||..... ....  ++...    .......+......++++| ++.++++.+  +
T Consensus        93 p~gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~--~~~~~----~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~  165 (329)
T 3fvz_A           93 PHGLSIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLI--LGRSM----QPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN  165 (329)
T ss_dssp             EEEEEECTT-SCEEEEETTTTEEEEECTTCSSCCSEE--ESBTT----BCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred             ceEEEECCC-CCEEEEECCCCEEEEEeCCCCeEEEEE--ecccC----CCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence            789999998 6788888889999999986432 1110  00000    0000022344688999999 888888875  5


Q ss_pred             CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec----------CccceeeeeEEEEe
Q 012712          282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK----------GHRNCVTVKGVNFF  351 (458)
Q Consensus       282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~  351 (458)
                      +.|++|+... .                                      ....+.          ++..  ....+++ 
T Consensus       166 ~~I~~~~~~g-~--------------------------------------~~~~~~~~g~~~~~~~~~~~--~p~gia~-  203 (329)
T 3fvz_A          166 SRIVQFSPSG-K--------------------------------------FVTQWGEESSGSSPRPGQFS--VPHSLAL-  203 (329)
T ss_dssp             CEEEEECTTS-C--------------------------------------EEEEECEECCSSSCCTTEES--CEEEEEE-
T ss_pred             CeEEEEcCCC-C--------------------------------------EEEEeccCCCCCCCCCcccC--CCcEEEE-
Confidence            5899998432 1                                      111111          1111  2578888 


Q ss_pred             cCC-CcEEEEecCCCeEEEEEecCCeEEEEee--cCCceeeEEEecC------CCCeEEEeecCCcEEEecCCccccccc
Q 012712          352 GPK-CEYVVSGSDCGRIFIWKKKGGELIRVIE--ADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAADRATL  422 (458)
Q Consensus       352 s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~------~~~~l~s~~~d~~i~iw~~~~~~~~~~  422 (458)
                      +|+ ++++++...+++|++|+..+++.+..+.  .+...+..++++|      +|+.+++...+..|++|++.+++....
T Consensus       204 d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          204 VPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence            998 7888888889999999998899988884  3556788999999      444444444566999999988877654


Q ss_pred             ----ccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          423 ----PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       423 ----~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                          ..+......++++|||.++++...++.|++|+.-
T Consensus       284 ~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          284 FKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             ECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence                3556669999999999888888899999999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=1.1e-17  Score=146.14  Aligned_cols=268  Identities=9%  Similarity=0.018  Sum_probs=178.7

Q ss_pred             cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC
Q 012712          105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA  184 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  184 (458)
                      ..|.++.|+|  ++..++..+.++.++.|.   .+....  +..+...+.+++|+|++ .+++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSG--KSNSAVPIISESELQTIT---AEPWLE--ISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCG--GGGCSSCCCCGGGSCEEE---CEEEEE--EESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecC--CccceeEEeecccCcccc---cceeEE--EeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc
Confidence            4577888998  887777777788899992   222222  44555677899999998 677788889999999998876


Q ss_pred             ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC----CeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      .......          ....+.+++++|+ ++++++...+    +.|.+||..+.+.....             .....
T Consensus        78 ~~~~~~~----------~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-------------~~~~~  133 (333)
T 2dg1_A           78 IKRPFVS----------HKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDII-------------EDLST  133 (333)
T ss_dssp             EEEEEEC----------SSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCSCEEEE-------------CSSSS
T ss_pred             EEEEeeC----------CCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-------------ccCcc
Confidence            5443311          2235899999998 5677766655    68999998776421000             00112


Q ss_pred             ccceeEEEeCCCCcEEEEecC-------CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712          261 QVGITGLAFSDQSELLVSYND-------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP  333 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~~-------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (458)
                      ...+..++++|+|+++++...       +.|+.++..++                                       ..
T Consensus       134 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~---------------------------------------~~  174 (333)
T 2dg1_A          134 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---------------------------------------TV  174 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC---------------------------------------CE
T ss_pred             CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC---------------------------------------EE
Confidence            356889999999998887663       23555554321                                       11


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecC-CeEEEE--------eecCCceeeEEEecCCCCeEEEe
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG-GELIRV--------IEADRHVVNCIEPHPHSTVLASS  403 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~--------~~~~~~~v~~~~~s~~~~~l~s~  403 (458)
                      ..+.....  ....++| +|+|++|+ +.+.++.|++|++.+ ++.+..        +.++ ..+..++++++|+++++.
T Consensus       175 ~~~~~~~~--~~~~i~~-~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          175 TPIIQNIS--VANGIAL-STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             EEEEEEES--SEEEEEE-CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEE
T ss_pred             EEeecCCC--cccceEE-CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEE
Confidence            11111111  2567888 99998665 445678999999963 332221        1222 467889999999988888


Q ss_pred             ecCCcEEEecCCcccccccccccc------cEEEEEEecCCcEEEeeecC
Q 012712          404 GIESDIKILTPNAADRATLPTNIE------QVCFSIYSADYWWSKSQNFS  447 (458)
Q Consensus       404 ~~d~~i~iw~~~~~~~~~~~~~~~------~v~~~~~s~d~~~l~s~~~d  447 (458)
                      ..++.|.+|+.+......+..+..      .+.+++|+||+..|+.++.+
T Consensus       251 ~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          251 YGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            778999999986443333322222      58899999998766554544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.81  E-value=2.2e-17  Score=158.43  Aligned_cols=252  Identities=8%  Similarity=-0.031  Sum_probs=160.6

Q ss_pred             cCCCceEEEEEecCCCEEE-----EecCCCeEEEEECCCccee-eeeccCCCcceeEEEEccCCCCeEEEEEcCCCc---
Q 012712           59 KHRGCVNTVSFNTDGDILI-----SGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ---  129 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~-----s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~---  129 (458)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++.+ ......  .....++|+|  |++.|+.++.+..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wsp--Dg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTP--DSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECT--TSSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEec--CCCEEEEEEecCCCCC
Confidence            5666899999999999999     4555679999999998865 221111  1126899999  9999999988766   


Q ss_pred             ----------EEEeecccccce--eeeeccccccceEEEEEcCCCCeEEEEecCCC----eEEEEeCCCCCccceeeecc
Q 012712          130 ----------VRHAQILERGGV--ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRP  193 (458)
Q Consensus       130 ----------i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~  193 (458)
                                |++|++.++...  .......+...+..+.|+|+|.. |+..+.++    .|++|+..+++......   
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~l~~~~~~~~~~~~l~~---  269 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY-LFVYILRGWSENDVYWKRPGEKDFRLLVK---  269 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC-EEEEEEETTTEEEEEEECTTCSSCEEEEE---
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE-EEEEEeCCCCceEEEEEcCCCCceEEeec---
Confidence                      999999877632  22223345567889999999955 44444443    56676655444322221   


Q ss_pred             cCCCCcceeecceEEEEECCCCCcEEEEec---CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC
Q 012712          194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS  270 (458)
Q Consensus       194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  270 (458)
                              ....+....+ +++. +++...   .++.|.+||+.+.+..                               
T Consensus       270 --------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-------------------------------  308 (695)
T 2bkl_A          270 --------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-------------------------------  308 (695)
T ss_dssp             --------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-------------------------------
T ss_pred             --------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-------------------------------
Confidence                    1112333444 4433 444333   2456666666443200                               


Q ss_pred             CCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712          271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF  350 (458)
Q Consensus       271 ~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  350 (458)
                                                                                   ....+..+.....+..+++
T Consensus       309 -------------------------------------------------------------~~~~l~~~~~~~~l~~~~~  327 (695)
T 2bkl_A          309 -------------------------------------------------------------SWKEIVPEDSSASLLSVSI  327 (695)
T ss_dssp             -------------------------------------------------------------GCEEEECCCSSCEEEEEEE
T ss_pred             -------------------------------------------------------------CCeEEecCCCCCeEEEEEE
Confidence                                                                         0011111110112566777


Q ss_pred             ecCCCcEEEEecCCCeEEEEEec-CCeEEEEeecC-CceeeEEEecCCCCeEEE----eecCCcEEEecCCccccccc
Q 012712          351 FGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEAD-RHVVNCIEPHPHSTVLAS----SGIESDIKILTPNAADRATL  422 (458)
Q Consensus       351 ~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s----~~~d~~i~iw~~~~~~~~~~  422 (458)
                       + ++.++++...|+..+||.+. +++....+..+ .+.+..++++|+++.|+.    ....++|++||+.+++...+
T Consensus       328 -~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l  403 (695)
T 2bkl_A          328 -V-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW  403 (695)
T ss_dssp             -E-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             -E-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence             5 67888899999988888765 46666777655 677889999999987773    33457899999988764433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=1.6e-15  Score=130.09  Aligned_cols=285  Identities=11%  Similarity=0.032  Sum_probs=192.3

Q ss_pred             eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712           57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL  136 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~  136 (458)
                      +..+...+.+++++++|+++++...++.|.+||.. ++........+...+.++++.+  ++.++++...++.|..|+..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEECCC
Confidence            34556789999999999988877778899999988 5543322233457799999999  99888887778889999975


Q ss_pred             cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                       ++ .....+......+..+++.|++ .++++...++.|..||. +++... +....        ....+..++++++ +
T Consensus        87 -g~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~--------~~~~~~~i~~~~~-g  152 (299)
T 2z2n_A           87 -GI-IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIRE-YELPN--------KGSYPSFITLGSD-N  152 (299)
T ss_dssp             -SC-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEE-EECSS--------TTCCEEEEEECTT-S
T ss_pred             -Cc-EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEE-ecCCC--------CCCCCceEEEcCC-C
Confidence             32 2222233345578899999988 67777777889999998 554322 21110        1225789999997 5


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP  295 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~  295 (458)
                      ++.++...++.|..||. +++....              ........+..++++++|.++++.. .+.|..|+. ++.. 
T Consensus       153 ~l~v~~~~~~~i~~~~~-~g~~~~~--------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-  215 (299)
T 2z2n_A          153 ALWFTENQNNAIGRITE-SGDITEF--------------KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-  215 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TCCEEEE--------------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-
T ss_pred             CEEEEeCCCCEEEEEcC-CCcEEEe--------------eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-
Confidence            67776667789999998 5432110              0111234578999999999777765 557999987 4210 


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                                                          .......+..  .+.++++ +++|+++++...++.|..||. ++
T Consensus       216 ------------------------------------~~~~~~~~~~--~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g  255 (299)
T 2z2n_A          216 ------------------------------------TEFKIPTPNA--RPHAITA-GAGIDLWFTEWGANKIGRLTS-NN  255 (299)
T ss_dssp             ------------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEEET-TT
T ss_pred             ------------------------------------EEEECCCCCC--CceeEEE-CCCCCEEEeccCCceEEEECC-CC
Confidence                                                0001111112  3678888 999997777667899999998 55


Q ss_pred             eEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          376 ELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       376 ~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      +.... +..+...+.++++ ++++++++.. .+.|..+++.++
T Consensus       256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          256 IIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             ceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            43322 2344567899999 8888777655 566777776554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.80  E-value=2.4e-17  Score=142.11  Aligned_cols=306  Identities=12%  Similarity=0.036  Sum_probs=199.5

Q ss_pred             EEEecCCCEEEEecC-----CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCCcEE
Q 012712           67 VSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVR  131 (458)
Q Consensus        67 ~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg~i~  131 (458)
                      ....|+++.++....     ++.|.+.|..+++.+..+..+.. +  .++++|  |++++++++          .++.|.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P--~va~sp--DG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P--NPVVAD--DGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C--cEEECC--CCCEEEEEcccccccccCCCCCEEE
Confidence            445689988887755     57999999999999888854433 3  499999  999988775          357899


Q ss_pred             Eeecccccceeeeeccc-----cccceEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          132 HAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      +||..+.+......+..     .......++++|+|+.++++.. .++.|.++|+.+++.+..+....            
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g------------  180 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD------------  180 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------------
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC------------
Confidence            99999988766543321     1124567999999955444443 36899999999998887775321            


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccce-eEEEe-CCCCcEEEEecCC
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAF-SDQSELLVSYNDE  282 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-~~~~~~l~~~~~~  282 (458)
                        +....|.+...+++.+.||.+.+.++.. ++.....  .         ........++ ....| .++|+++....++
T Consensus       181 --~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~--~---------~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g  247 (386)
T 3sjl_D          181 --CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH--T---------EVFHPEDEFLINHPAYSQKAGRLVWPTYTG  247 (386)
T ss_dssp             --EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE--C---------CCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred             --cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee--c---------ceeccccccccccceeEcCCCcEEEEeCCC
Confidence              1112243455677777888888888876 3321100  0         0000011111 12355 4788877766678


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee-----cCccceeeeeEEEEecCCCcE
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-----KGHRNCVTVKGVNFFGPKCEY  357 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~s~~~~~  357 (458)
                      .+++.|+........                                 .....+     .....+.....+++ +++++.
T Consensus       248 ~V~v~d~~~~~~~v~---------------------------------~~~~~~~~~~~~~g~~p~g~q~~a~-~~~~~~  293 (386)
T 3sjl_D          248 KIHQIDLSSGDAKFL---------------------------------PAVEALTEAERADGWRPGGWQQVAY-HRALDR  293 (386)
T ss_dssp             EEEEEECTTSSCEEC---------------------------------CCEESSCHHHHHTTEEECSSSCEEE-ETTTTE
T ss_pred             EEEEEECCCCcceee---------------------------------cceeccccccccccccCCCcceeeE-CCCCCe
Confidence            899999875421000                                 000000     00001111334666 889888


Q ss_pred             EEEecC----------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEe-ecCCcEEEecCCcccccccccc
Q 012712          358 VVSGSD----------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRATLPTN  425 (458)
Q Consensus       358 l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~d~~i~iw~~~~~~~~~~~~~  425 (458)
                      ++....          .++|.++|+.+++.++++... ..+..|++++|++ +|+++ ..++.|.++|..+++.......
T Consensus       294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence            887642          257999999999999988643 3688999999997 66654 4589999999999987755555


Q ss_pred             cccEEEEEEecC
Q 012712          426 IEQVCFSIYSAD  437 (458)
Q Consensus       426 ~~~v~~~~~s~d  437 (458)
                      .+.-..+.+++|
T Consensus       373 ~~~p~~l~~s~d  384 (386)
T 3sjl_D          373 LGHGPQVITTAD  384 (386)
T ss_dssp             CCSSCCEEEECC
T ss_pred             CCCCceeEECCc
Confidence            555556667766

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.80  E-value=6.5e-17  Score=155.69  Aligned_cols=252  Identities=8%  Similarity=-0.050  Sum_probs=160.9

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCC-----eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc----
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDR-----RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ----  129 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~----  129 (458)
                      +|...+..++|||||++||.+..++     .|++||+.+++.......  ...+..++|+|  |++.|+.++.++.    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~~~~~~~~wsp--Dg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTH--DGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--CcccceEEEEe--CCCEEEEEEECCccccc
Confidence            4555788999999999999765433     899999999887654322  22367899999  9999999887765    


Q ss_pred             ------------EEEeecccccceeee--eccccccceEEEEEcCCCCeEEEEecC----CCeEEEEeCCC------CC-
Q 012712          130 ------------VRHAQILERGGVETK--LLGKHQGRAHKLAIEPGSPHVFYTCGE----DGLVQHFDLRT------GA-  184 (458)
Q Consensus       130 ------------i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~------~~-  184 (458)
                                  |++|++.++......  ....|...+..+.|+|++..++++...    +..|++||+.+      +. 
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                        999999876532111  122345567899999999544444331    56899999876      32 


Q ss_pred             ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC---CeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712          185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ  261 (458)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (458)
                      ....+...          ...+.. .|+|++..+++.+..+   +.|.+||+.+.+.                       
T Consensus       278 ~~~~l~~~----------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-----------------------  323 (710)
T 2xdw_A          278 KWVKLIDN----------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-----------------------  323 (710)
T ss_dssp             CCEEEECS----------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-----------------------
T ss_pred             ceEEeeCC----------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-----------------------
Confidence            12222210          111222 3556533233332221   2355555433210                       


Q ss_pred             cceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712          262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN  341 (458)
Q Consensus       262 ~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (458)
                                                                                           ...+.+..+..
T Consensus       324 ---------------------------------------------------------------------~~~~~l~~~~~  334 (710)
T 2xdw_A          324 ---------------------------------------------------------------------SKWKVLVPEHE  334 (710)
T ss_dssp             ---------------------------------------------------------------------GGCEEEECCCS
T ss_pred             ---------------------------------------------------------------------ccceeccCCCC
Confidence                                                                                 00112222222


Q ss_pred             eeeeeEEEEecCCCcEEEEecCCCe--EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe----ecCCcEEEecCC
Q 012712          342 CVTVKGVNFFGPKCEYVVSGSDCGR--IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS----GIESDIKILTPN  415 (458)
Q Consensus       342 ~~~i~~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~d~~i~iw~~~  415 (458)
                      ...+..++| ++++.++++...++.  |++|++.+++.+..+..+.+.+..++++|+++.++..    ...++|.+||+.
T Consensus       335 ~~~~~~~~~-~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          335 KDVLEWVAC-VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             SCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             CCeEEEEEE-EcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence            113667777 778888888888885  5566766788888888888889999999999866533    235789999998


Q ss_pred             ccc
Q 012712          416 AAD  418 (458)
Q Consensus       416 ~~~  418 (458)
                      +++
T Consensus       414 tg~  416 (710)
T 2xdw_A          414 KEE  416 (710)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.80  E-value=9.6e-16  Score=134.46  Aligned_cols=292  Identities=13%  Similarity=0.030  Sum_probs=188.1

Q ss_pred             CCCCCCeEEEeeC--CC---cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712            6 NNNNNKRARTSVD--KA---LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS   80 (458)
Q Consensus         6 ~~~~~~~l~~~~~--d~---~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   80 (458)
                      .+|+++++++...  ..   .|.++|..+++.+.+                     +.....+  .++++|||++|+.+.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~---------------------i~~g~~p--~i~~spDg~~lyv~n   84 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH---------------------VNGGFLP--NPVAAHSGSEFALAS   84 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE---------------------ecCCCCC--CeEECCCCCEEEEEe
Confidence            4578887777653  22   889999998876632                     4433344  899999999999875


Q ss_pred             ----------CCCeEEEEECCCcceeeeeccC------CCcceeEEEEccCCCCeEEEEEcC--CCcEEEeeccccccee
Q 012712           81 ----------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVE  142 (458)
Q Consensus        81 ----------~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~  142 (458)
                                .++.|.+||..+.+.+..+..+      +......++|+|  |+++|+++..  ++.|.++| .+++...
T Consensus        85 ~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H           85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             ccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence                      3678999999988877665322      012345899999  9999998874  47899999 8876554


Q ss_pred             e-eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc-eEEEEECCCCCcEEE
Q 012712          143 T-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN-LNAIAIDPRNANLFA  220 (458)
Q Consensus       143 ~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~  220 (458)
                      . ....      .++.+.|+++..+++.+.||.+.++|. +++............     ...+ .....+.++++.+++
T Consensus       162 ~~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~  229 (373)
T 2mad_H          162 QLLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT-----AAQNLLTQPAQANKSGRIVW  229 (373)
T ss_pred             EEcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc-----CCcceeecceeEecCCEEEE
Confidence            3 2221      125566777677888889999999999 776653321100000     1111 123456666444444


Q ss_pred             EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCC
Q 012712          221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS  300 (458)
Q Consensus       221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~  300 (458)
                      +. ..+.+.+.|+........             ..............|.|.+                           
T Consensus       230 ~~-~~~~v~vid~~~~~~~v~-------------~~~~~~~~~~~~~~~~p~g---------------------------  268 (373)
T 2mad_H          230 PV-YSGKILQADISAAGATNK-------------APIDALSGGRKADTWRPGG---------------------------  268 (373)
T ss_pred             Ec-CCceEEEEeccCCcceEe-------------eeeeecCCcccccceecCc---------------------------
Confidence            44 677888888865421000             0000000000011111111                           


Q ss_pred             CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC----------CCeEEEE
Q 012712          301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD----------CGRIFIW  370 (458)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~----------dg~i~iw  370 (458)
                                                                  ...+.+ +|+++.++.+..          .+.|.++
T Consensus       269 --------------------------------------------~~~~~~-s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          269 --------------------------------------------WQQVAY-LKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             --------------------------------------------eEeEEE-CCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence                                                        223445 888887776543          3589999


Q ss_pred             EecCCeEEEEeecCCceeeEEEecCCCC-eEEEee-cCCcEEEecCCccccccc
Q 012712          371 KKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRATL  422 (458)
Q Consensus       371 d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~iw~~~~~~~~~~  422 (458)
                      |+.+++.+.++.. ......++|+|||+ +++++. .++.|.++|..+++....
T Consensus       304 D~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          304 TGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             ECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            9999999998864 33588999999999 777776 489999999999876644

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=2.5e-17  Score=144.73  Aligned_cols=255  Identities=8%  Similarity=0.082  Sum_probs=166.9

Q ss_pred             ceeEEEEccCCCCeEEEEEc---------CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC---C
Q 012712          106 NVFQAKIMPFTDDRSIVTCA---------ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---G  173 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~s~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g  173 (458)
                      .+..+++    ||+.++...         .++.|.+|++.+++...   +    ..+..++|+|+|. .|+..+.+   +
T Consensus        16 ~~~~~~~----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l----~~~~~~~~SpDg~-~la~~~~~~~~~   83 (347)
T 2gop_A           16 YLSDPRT----KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I----ENATMPRISPDGK-KIAFMRANEEKK   83 (347)
T ss_dssp             EEEEEEE----ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E----ESCEEEEECTTSS-EEEEEEEETTTT
T ss_pred             EcccceE----CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c----ccCCCeEECCCCC-EEEEEEeccCCC
Confidence            4555666    455555432         25678999988765422   3    5678899999995 45554432   3


Q ss_pred             --eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---------------------------
Q 012712          174 --LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---------------------------  224 (458)
Q Consensus       174 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------------------------  224 (458)
                        .|.+||+.+++......           ... +..++|+|+ ++.|+.++.                           
T Consensus        84 ~~~l~~~~~~~g~~~~l~~-----------~~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  150 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILE-----------AKN-IRSLEWNED-SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE  150 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEE-----------ESE-EEEEEECTT-SSEEEEEEECCCC---------CCCC---------C
T ss_pred             cceEEEEECCCCceEEEEc-----------CCC-ccceeECCC-CCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence              48888888876554433           222 789999998 566666653                           


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--------cEEEEEccCCCCCC
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--------FIYLFTQDMGLGPN  296 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------~i~i~~~~~~~~~~  296 (458)
                      ...|++||+.+++..               ..... . .+..++|+|+| +++++..+        ...+|.++++    
T Consensus       151 ~~~l~~~d~~~~~~~---------------~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~----  208 (347)
T 2gop_A          151 KTTFWIFDTESEEVI---------------EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG----  208 (347)
T ss_dssp             EEEEEEEETTTTEEE---------------EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT----
T ss_pred             cceEEEEECCCCeEE---------------eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC----
Confidence            256889998776520               11111 2 67889999999 77666421        3344443321    


Q ss_pred             CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC--------CeEE
Q 012712          297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC--------GRIF  368 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d--------g~i~  368 (458)
                                                        . ...+..+ .  .+.  .+ +|||++|+.++.+        ..|+
T Consensus       209 ----------------------------------~-~~~l~~~-~--~~~--~~-spdg~~l~~~~~~~~~~~~~~~~l~  247 (347)
T 2gop_A          209 ----------------------------------K-EEKMFEK-V--SFY--AV-DSDGERILLYGKPEKKYMSEHNKLY  247 (347)
T ss_dssp             ----------------------------------E-EEEEEEE-E--SEE--EE-EECSSCEEEEECCSSSCCCSSCEEE
T ss_pred             ----------------------------------c-eEEeccC-c--cee--eE-CCCCCEEEEEEccccCCccccceEE
Confidence                                              1 1222222 1  133  34 8999988876644        4688


Q ss_pred             EEEecCCeEEEEeecCCceeeE-EEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecC
Q 012712          369 IWKKKGGELIRVIEADRHVVNC-IEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFS  447 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  447 (458)
                      +||  +++.......+...+.. +.|+ |+ ++++++.++.++|| +.+++...+..+...|.+++|+|  .++++++.+
T Consensus       248 ~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~  320 (347)
T 2gop_A          248 IYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETA  320 (347)
T ss_dssp             EEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECS
T ss_pred             EEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCC
Confidence            888  66655445566778886 9999 88 88999999999999 87666555556667799999999  666676766


Q ss_pred             Cce-EEEEE
Q 012712          448 CSI-LLFEW  455 (458)
Q Consensus       448 ~~i-~~w~~  455 (458)
                      +.. .||.+
T Consensus       321 ~~~~~l~~~  329 (347)
T 2gop_A          321 TRLRELFTW  329 (347)
T ss_dssp             SSCCEEEEE
T ss_pred             CChHHheEe
Confidence            664 78764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=6e-17  Score=140.41  Aligned_cols=268  Identities=10%  Similarity=0.014  Sum_probs=180.2

Q ss_pred             cCCCeEEEEECCCcceeeeecc-----CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceE
Q 012712           80 SDDRRVILWDWKTERVKLSFHS-----GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH  154 (458)
Q Consensus        80 ~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~  154 (458)
                      +.++.|.++|.++++....+..     ........+.+.   ++..+++...++.|.+||..+++.+..  +. ......
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~--i~-~~~~p~   87 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGR--IT-GFTSPR   87 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CCSSEE
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEE--cC-CCCCCc
Confidence            3488999999999887654421     122346778774   567777777789999999998887655  32 345678


Q ss_pred             EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCeEEEEec
Q 012712          155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDI  233 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~  233 (458)
                      .+++++++ .++++...++.|.+||+.+++....+.......     .......+++ . ++.++++.. .++.|.++|.
T Consensus        88 ~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~-----~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           88 YIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM-----ESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDT  159 (328)
T ss_dssp             EEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT-----TTCBCCCEEE-E-TTEEEEEECTTCCEEEEEET
T ss_pred             EEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc-----cCCCcceEEE-E-CCEEEEEcCCCCCEEEEEEC
Confidence            89999988 666666588999999999988766554322000     0013455666 2 345555544 4889999999


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-----------CcEEEEEccCCCCCCCCCCCC
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----------EFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      .+++.......                ......++++|+|++++++..           +.|.++|..+.          
T Consensus       160 ~t~~~~~~i~~----------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----------  213 (328)
T 3dsm_A          160 ETDKVVDELTI----------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----------  213 (328)
T ss_dssp             TTTEEEEEEEC----------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----------
T ss_pred             CCCeEEEEEEc----------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC----------
Confidence            98764332111                123467889999998777653           46999998763          


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE--
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV--  380 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--  380 (458)
                                                  +....+.-.... ....+++ +|++++|+++..  .|.+||..+++....  
T Consensus       214 ----------------------------~v~~~~~~~~g~-~p~~la~-~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~  261 (328)
T 3dsm_A          214 ----------------------------TVEKQFKFKLGD-WPSEVQL-NGTRDTLYWINN--DIWRMPVEADRVPVRPF  261 (328)
T ss_dssp             ----------------------------EEEEEEECCTTC-CCEEEEE-CTTSCEEEEESS--SEEEEETTCSSCCSSCS
T ss_pred             ----------------------------eEEEEEecCCCC-CceeEEE-ecCCCEEEEEcc--EEEEEECCCCceeeeee
Confidence                                        222222211111 2578888 999999888765  899999988775421  


Q ss_pred             eecCCceeeEEEecC-CCCeEEEe----ecCCcEEEecCCccccc
Q 012712          381 IEADRHVVNCIEPHP-HSTVLASS----GIESDIKILTPNAADRA  420 (458)
Q Consensus       381 ~~~~~~~v~~~~~s~-~~~~l~s~----~~d~~i~iw~~~~~~~~  420 (458)
                      +..+......++++| ++.++++.    ..++.|.+|+.. ++..
T Consensus       262 ~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          262 LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            222235688999999 45555555    568999999998 5544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.79  E-value=3e-16  Score=135.31  Aligned_cols=304  Identities=13%  Similarity=0.093  Sum_probs=196.6

Q ss_pred             CCCCCCCeEEEeeC-----CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe
Q 012712            5 SNNNNNKRARTSVD-----KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG   79 (458)
Q Consensus         5 ~~~~~~~~l~~~~~-----d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   79 (458)
                      ..+|+++++++...     ++.|.+.|..+++.+.+                     +..-..+ . ++++|||++|+++
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~---------------------I~vG~~P-~-va~spDG~~lyVa   95 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM---------------------IDGGFLP-N-PVVADDGSFIAHA   95 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE---------------------EEECSSC-E-EEECTTSSCEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE---------------------EECCCCC-c-EEECCCCCEEEEE
Confidence            45789999888765     67999999998887743                     4433444 4 9999999988776


Q ss_pred             c----------CCCeEEEEECCCcceeeeeccCC------CcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccce
Q 012712           80 S----------DDRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGV  141 (458)
Q Consensus        80 ~----------~d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~  141 (458)
                      +          .++.|.+||..+++.+..+..+.      ......++|+|  ||++++.+..  ++.|.++|+.+.+.+
T Consensus        96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t~~vv  173 (386)
T 3sjl_D           96 STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAFK  173 (386)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             cccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence            5          35789999999999887764322      12456799999  9999888864  689999999998877


Q ss_pred             eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcceeecce-EEEEEC-CCCCcE
Q 012712          142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNL-NAIAID-PRNANL  218 (458)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-p~~~~~  218 (458)
                      ......+.      ....|.+...+++.+.||.+.+.++.+ ++.....  ......    ...++ ....|. ++ +++
T Consensus       174 ~tI~v~g~------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~--~~~~~~----~~~~~~~~~~~~~~d-G~~  240 (386)
T 3sjl_D          174 RMLDVPDC------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH--TEVFHP----EDEFLINHPAYSQKA-GRL  240 (386)
T ss_dssp             EEEECCSE------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE--CCCCSC----TTSCBCSCCEEETTT-TEE
T ss_pred             EEEECCCc------ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee--cceecc----ccccccccceeEcCC-CcE
Confidence            66433321      223355546677888899999999876 4442111  111000    00111 123554 54 555


Q ss_pred             EEEecCCCeEEEEecCCCcc--CCCccCCCCCCCcCCCcc-ccccccceeEEEeCCCCcEEEEecC-----------CcE
Q 012712          219 FAVAGSDEYTRLYDIRKYKW--DGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYND-----------EFI  284 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-----------~~i  284 (458)
                      ++ .+.+|.|++.|+.+...  .....+      +..... ..-.......++++|+++.+.....           +.|
T Consensus       241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~------~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V  313 (386)
T 3sjl_D          241 VW-PTYTGKIHQIDLSSGDAKFLPAVEA------LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  313 (386)
T ss_dssp             EE-EBTTSEEEEEECTTSSCEECCCEES------SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             EE-EeCCCEEEEEECCCCcceeecceec------cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence            44 45579999999976531  111000      000000 0111234456788898876665431           358


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEe-c
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSG-S  362 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~-~  362 (458)
                      .++|+.+.                                      +.+..+.-..   .+.++++ ++|++ +|++. .
T Consensus       314 ~viD~~t~--------------------------------------kv~~~i~vg~---~~~~lav-s~D~~~~ly~tn~  351 (386)
T 3sjl_D          314 VVLDAKTG--------------------------------------ERLAKFEMGH---EIDSINV-SQDEKPLLYALST  351 (386)
T ss_dssp             EEEETTTC--------------------------------------CEEEEEEEEE---EECEEEE-CSSSSCEEEEEET
T ss_pred             EEEECCCC--------------------------------------eEEEEEECCC---CcceEEE-CCCCCeEEEEEcC
Confidence            88998873                                      3333333222   3678998 99997 66664 4


Q ss_pred             CCCeEEEEEecCCeEEEEeecCCceeeEEEecCC
Q 012712          363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH  396 (458)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  396 (458)
                      .++.|.++|..+++.++++..- +..+.|.+++|
T Consensus       352 ~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          352 GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            5899999999999999998743 33466777766

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=2.3e-16  Score=136.69  Aligned_cols=286  Identities=12%  Similarity=0.086  Sum_probs=188.6

Q ss_pred             CCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceee
Q 012712           18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL   97 (458)
Q Consensus        18 ~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~   97 (458)
                      .++.|.++|.++++.....+...     +          -.........+.+. ++++.++...++.|.+||..+++.+.
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~-----n----------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~   78 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRA-----N----------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG   78 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHH-----H----------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhh-----c----------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE
Confidence            48899999999998765422100     0          01122445677775 35556666667899999999999888


Q ss_pred             eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc---cccceEEEEEcCCCCeEEEEec-CCC
Q 012712           98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK---HQGRAHKLAIEPGSPHVFYTCG-EDG  173 (458)
Q Consensus        98 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~-~dg  173 (458)
                      ++  ........+++++  ++..+++...++.|.+||..+++.........   .......+++ .++ .++++.. .++
T Consensus        79 ~i--~~~~~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~  152 (328)
T 3dsm_A           79 RI--TGFTSPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQN  152 (328)
T ss_dssp             EE--ECCSSEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCC
T ss_pred             Ec--CCCCCCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCC
Confidence            77  2346788999998  88655555578999999998876554432222   1114456777 334 5555554 488


Q ss_pred             eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC----------CeEEEEecCCCccCCCcc
Q 012712          174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD----------EYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~  243 (458)
                      .|.++|+++++....+...           .....++++|+ +++++++..+          +.|.++|..+.+......
T Consensus       153 ~v~viD~~t~~~~~~i~~g-----------~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          153 RILKIDTETDKVVDELTIG-----------IQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             EEEEEETTTTEEEEEEECS-----------SCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEcC-----------CCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence            9999999998877665421           13467889997 5666666554          789999998876432211


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS  323 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (458)
                                    .........++++|+++.|..... .+.+||..+++....                          
T Consensus       221 --------------~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~--------------------------  259 (328)
T 3dsm_A          221 --------------FKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVR--------------------------  259 (328)
T ss_dssp             --------------CCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSS--------------------------
T ss_pred             --------------cCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeee--------------------------
Confidence                          111235789999999988877665 899999876532110                          


Q ss_pred             CCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEe----cCCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712          324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSG----SDCGRIFIWKKKGGELIRVIEADRHVVNCIEP  393 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  393 (458)
                                ..+.....  ....+++ +| +++++++.    ..++.|.+||.. ++.+.++... .....++|
T Consensus       260 ----------~~~~~~~~--~p~gi~v-dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~  319 (328)
T 3dsm_A          260 ----------PFLEFRDT--KYYGLTV-NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW  319 (328)
T ss_dssp             ----------CSBCCCSS--CEEEEEE-CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred             ----------eeecCCCC--ceEEEEE-cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence                      00111111  2577888 99 55555555    568999999997 9888887642 23455555

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=1.2e-16  Score=136.75  Aligned_cols=232  Identities=11%  Similarity=0.082  Sum_probs=159.0

Q ss_pred             cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712          147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE  226 (458)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  226 (458)
                      ..+.....+++|+|++..+++++..++.|..||..++  ...+..          ....+.+++++|+ ++++++...++
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~----------~~~~~~~l~~~~d-g~l~v~~~~~~   90 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH----------PSHHQNGHCLNKQ-GHLIACSHGLR   90 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES----------SCSSEEEEEECTT-CCEEEEETTTT
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC----------CCCCcceeeECCC-CcEEEEecCCC
Confidence            3445567889999999558888999999999999877  333332          2235789999997 67777777778


Q ss_pred             eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE----ec--------------CCcEEEEE
Q 012712          227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS----YN--------------DEFIYLFT  288 (458)
Q Consensus       227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~--------------~~~i~i~~  288 (458)
                      .|.+||..+++.....           ..........+..++++|+|+++++    ++              .+.|+.++
T Consensus        91 ~i~~~d~~~g~~~~~~-----------~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A           91 RLERQREPGGEWESIA-----------DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             EEEEECSTTCCEEEEE-----------CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             eEEEEcCCCCcEEEEe-----------eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence            9999999776532110           0001111235678999999998887    32              12344444


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF  368 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~  368 (458)
                      .. +                                       ....+..+..  ....++| +|+|+++++.+.++.|+
T Consensus       160 ~~-g---------------------------------------~~~~~~~~~~--~~~gi~~-s~dg~~lv~~~~~~~i~  196 (296)
T 3e5z_A          160 PD-G---------------------------------------TLSAPIRDRV--KPNGLAF-LPSGNLLVSDTGDNATH  196 (296)
T ss_dssp             TT-S---------------------------------------CEEEEECCCS--SEEEEEE-CTTSCEEEEETTTTEEE
T ss_pred             CC-C---------------------------------------CEEEeecCCC--CCccEEE-CCCCCEEEEeCCCCeEE
Confidence            32 1                                       1112222222  2577888 99999988788889999


Q ss_pred             EEEec-CCeE---EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEE-ecCCcEEEe
Q 012712          369 IWKKK-GGEL---IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIY-SADYWWSKS  443 (458)
Q Consensus       369 iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~s  443 (458)
                      +|++. +++.   ...+..+...+..++++++|+++++.  ++.|.+|+........+..+.. +.+++| +|+++.|..
T Consensus       197 ~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v  273 (296)
T 3e5z_A          197 RYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYM  273 (296)
T ss_dssp             EEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred             EEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence            99996 5554   33343355667899999999977666  7899999998544444554555 889999 589988888


Q ss_pred             eecCC
Q 012712          444 QNFSC  448 (458)
Q Consensus       444 ~~~d~  448 (458)
                      ++.++
T Consensus       274 ~t~~~  278 (296)
T 3e5z_A          274 TVSTE  278 (296)
T ss_dssp             EETTE
T ss_pred             EcCCe
Confidence            77764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.76  E-value=4.5e-16  Score=130.70  Aligned_cols=223  Identities=9%  Similarity=0.063  Sum_probs=163.3

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEecCCCEEEEecCCCeEE
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDDRRVI   86 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~   86 (458)
                      ..+++|++++.|+.|.+||.++|+.+.+                     +..+. ..+.++.++|+|++|++  .++.|.
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~---------------------~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~   59 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWE---------------------YPLEKGWECNSVAATKAGEILFS--YSKGAK   59 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEE---------------------EECCTTCCCCEEEECTTSCEEEE--CBSEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEE---------------------eCCCccCCCcCeEECCCCCEEEe--CCCCEE
Confidence            3457899999999999999999998744                     55554 47889999999999884  467899


Q ss_pred             EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeecc----ccccceEEEEEcCC
Q 012712           87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLG----KHQGRAHKLAIEPG  161 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~~~~  161 (458)
                      .||. +++.+.++..+....+.++.+.|  +|+.+++.+. ++.+..++. +++.+....+.    .+......+++.++
T Consensus        60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~  135 (276)
T 3no2_A           60 MITR-DGRELWNIAAPAGCEMQTARILP--DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK  135 (276)
T ss_dssp             EECT-TSCEEEEEECCTTCEEEEEEECT--TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred             EECC-CCCEEEEEcCCCCccccccEECC--CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC
Confidence            9998 78888887443345788999999  9999999877 777777775 45544432221    22234556778899


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  241 (458)
                      + +++++...++.|..||.+ ++.+..+...           ..+.++...++ +++++++..++.|..+|..+++..-.
T Consensus       136 G-~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-----------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          136 G-NYLVPLFATSEVREIAPN-GQLLNSVKLS-----------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             S-CEEEEETTTTEEEEECTT-SCEEEEEECS-----------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred             C-CEEEEecCCCEEEEECCC-CCEEEEEECC-----------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence            8 688999999999999988 8887776532           23456777886 68888888888999999998775432


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      ..-         ..........+..++..++|.++++..
T Consensus       202 ~~~---------~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          202 VNA---------NDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEG---------GGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             ecC---------CCCCCccccccccceEcCCCCEEEEec
Confidence            110         000001123478888999999888875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=1e-15  Score=130.97  Aligned_cols=243  Identities=9%  Similarity=0.015  Sum_probs=163.3

Q ss_pred             CCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          102 GHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      .+.....+++|+|  +++ +++++..++.|..|+..++  ...  +..+...+.+++++|++ .++++...++.|.+||.
T Consensus        25 ~~~~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~~--~~~--~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           25 DGFTWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDGQ--LSP--EMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CCCSSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTSC--EEE--EESSCSSEEEEEECTTC-CEEEEETTTTEEEEECS
T ss_pred             cCCccccCCeEeC--CCCEEEEEeCCCCEEEEEECCCC--eEE--EECCCCCcceeeECCCC-cEEEEecCCCeEEEEcC
Confidence            4455678999999  987 7788888999999998776  332  44566778999999999 67777766789999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE----ec-------------CCCeEEEEecCCCccCCCcc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV----AG-------------SDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~  243 (458)
                      .+++..........      .....+..++++|+ ++++++    |+             ..+.|..++.. ++.     
T Consensus        98 ~~g~~~~~~~~~~~------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----  164 (296)
T 3e5z_A           98 PGGEWESIADSFEG------KKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-----  164 (296)
T ss_dssp             TTCCEEEEECEETT------EECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----
T ss_pred             CCCcEEEEeeccCC------CCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-----
Confidence            88875433221100      01224678999998 577776    33             13456666654 221     


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP  322 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (458)
                                 .....+......++|+|+|+.+++.+ ++.|++|++.....                            
T Consensus       165 -----------~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~----------------------------  205 (296)
T 3e5z_A          165 -----------SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE----------------------------  205 (296)
T ss_dssp             -----------EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC----------------------------
T ss_pred             -----------EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc----------------------------
Confidence                       11122334568899999999886655 45799999862100                            


Q ss_pred             CCCCcccc-cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEe-cCCCCeE
Q 012712          323 STANTDVR-IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP-HPHSTVL  400 (458)
Q Consensus       323 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l  400 (458)
                             . .....+..+..  .+.++++ +++|+++++.  ++.|.+|+.. ++.+..+..+.. +.+++| +|+++.|
T Consensus       206 -------~~~~~~~~~~~~~--~p~~i~~-d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L  271 (296)
T 3e5z_A          206 -------TEYQGVHFTVEPG--KTDGLRV-DAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL  271 (296)
T ss_dssp             -------EEEEEEEECCSSS--CCCSEEE-BTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred             -------CcCCCeEeeCCCC--CCCeEEE-CCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence                   0 00111211111  2456787 9999877666  7899999985 888888887777 999999 6899988


Q ss_pred             EEeecCCcEEEecCCccc
Q 012712          401 ASSGIESDIKILTPNAAD  418 (458)
Q Consensus       401 ~s~~~d~~i~iw~~~~~~  418 (458)
                      ++++.++ +.-++..+..
T Consensus       272 ~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          272 YMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             EEEETTE-EEEEECSCCB
T ss_pred             EEEcCCe-EEEEEccccc
Confidence            8887653 4444444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.76  E-value=2.6e-14  Score=122.60  Aligned_cols=277  Identities=10%  Similarity=0.006  Sum_probs=187.2

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR  181 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  181 (458)
                      .+...+.++++.+  ++.++++...++.|.+|+.. +.. .......+...+..+++++++ .++++...++.|..||..
T Consensus        12 ~~~~~~~~i~~d~--~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           12 NQDTGPYGITVSD--KGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SSSCCEEEEEECT--TSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             CcCCCccceEECC--CCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC
Confidence            3456789999999  99888877778899999987 433 222233345678999999998 677776668899999976


Q ss_pred             CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712          182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ  261 (458)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (458)
                       ++ ...+....        ....+..++++|+ +.++++...++.|..||. +++...              .......
T Consensus        87 -g~-~~~~~~~~--------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~--------------~~~~~~~  140 (299)
T 2z2n_A           87 -GI-IKEYTLPN--------PDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGKIRE--------------YELPNKG  140 (299)
T ss_dssp             -SC-EEEEECSS--------TTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEE--------------EECSSTT
T ss_pred             -Cc-EEEEeCCC--------cCCCceeeEECCC-CCEEEEecCCceEEEECC-CCCEEE--------------ecCCCCC
Confidence             33 22222110        1225789999997 567777777889999998 433210              0011123


Q ss_pred             cceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712          262 VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR  340 (458)
Q Consensus       262 ~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (458)
                      ..+..+++.++|+++++.. .+.+..|+. ++...                                     ........
T Consensus       141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-------------------------------------~~~~~~~~  182 (299)
T 2z2n_A          141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-------------------------------------EFKIPTPA  182 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-------------------------------------EEECSSTT
T ss_pred             CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-------------------------------------EeeCCCCC
Confidence            4688999999998888766 457999987 42100                                     00011111


Q ss_pred             ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      .  .+.++++ +++|++.++...++.|.+||. +++.... +..+...+.+++++++|+++++...++.|..|+.. ++.
T Consensus       183 ~--~~~~i~~-~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~  257 (299)
T 2z2n_A          183 S--GPVGITK-GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII  257 (299)
T ss_dssp             C--CEEEEEE-CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE
T ss_pred             C--cceeEEE-CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cce
Confidence            1  3678888 999998777777889999998 6664432 23344678999999999977776678899999984 433


Q ss_pred             cc--cccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          420 AT--LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       420 ~~--~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ..  ...+...+.++++ ++|.+.++.. .+.|..++
T Consensus       258 ~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~  292 (299)
T 2z2n_A          258 EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT  292 (299)
T ss_dssp             EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred             EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence            32  2344456899999 9997776644 45565555

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=1.7e-15  Score=145.90  Aligned_cols=249  Identities=7%  Similarity=-0.062  Sum_probs=158.8

Q ss_pred             cccceEEEEEcCCCCeEEEEecCCC----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          149 HQGRAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       149 ~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      |...+..++|+|||..++++.+.+|    .|++||+.+++......           ....+..++|+|| ++.|+.++.
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-----------~~~~~~~~~wspD-g~~l~~~~~  190 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-----------ERVKFSCMAWTHD-GKGMFYNAY  190 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-----------EEECSCCEEECTT-SSEEEEEEC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-----------cCcccceEEEEeC-CCEEEEEEE
Confidence            4446889999999954444444343    89999999987655322           1223567999998 577777766


Q ss_pred             CCe----------------EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec------CC
Q 012712          225 DEY----------------TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN------DE  282 (458)
Q Consensus       225 dg~----------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~~  282 (458)
                      ++.                |++|++.+.+.....           ......+...+..+.|+|||++|+..+      +.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~-----------v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  259 (710)
T 2xdw_A          191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-----------CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (710)
T ss_dssp             CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-----------EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             CCccccccccccccCCCCEEEEEECCCCcccceE-----------EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence            655                999999876421110           000111334577899999999888765      23


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      .+++||+.+......                               .......+..+...  +.. .| +|+|+.|+..+
T Consensus       260 ~l~~~d~~~~~~~~~-------------------------------~~~~~~~l~~~~~~--~~~-~~-s~dg~~l~~~s  304 (710)
T 2xdw_A          260 RLWYCDLQQESNGIT-------------------------------GILKWVKLIDNFEG--EYD-YV-TNEGTVFTFKT  304 (710)
T ss_dssp             EEEEEEGGGSSSSSC-------------------------------SSCCCEEEECSSSS--CEE-EE-EEETTEEEEEE
T ss_pred             EEEEEECcccccccC-------------------------------CccceEEeeCCCCc--EEE-EE-eccCCEEEEEE
Confidence            699999875100000                               00023334444432  222 34 88888777655


Q ss_pred             C----CCeEEEEEecCCe--EEEEeecCCc--eeeEEEecCCCCeEEEeecCCc--EEEecCCcccc-cccccccccEEE
Q 012712          363 D----CGRIFIWKKKGGE--LIRVIEADRH--VVNCIEPHPHSTVLASSGIESD--IKILTPNAADR-ATLPTNIEQVCF  431 (458)
Q Consensus       363 ~----dg~i~iwd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~--i~iw~~~~~~~-~~~~~~~~~v~~  431 (458)
                      .    ++.|.+||+.+++  ....+..|..  .+..++|++++.++++...|+.  |.+|++.+++. ..+..+.+.+..
T Consensus       305 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~  384 (710)
T 2xdw_A          305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVG  384 (710)
T ss_dssp             CTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred             CCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEE
Confidence            4    3479999998764  2345555543  6888999988888888888885  55667755543 455556667889


Q ss_pred             EEEecCCcEEEee----ecCCceEEEEE
Q 012712          432 SIYSADYWWSKSQ----NFSCSILLFEW  455 (458)
Q Consensus       432 ~~~s~d~~~l~s~----~~d~~i~~w~~  455 (458)
                      ++++|++..++..    ...+.|.+||.
T Consensus       385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          385 YSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             EECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             EecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            9999999666532    23456777764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=1.5e-15  Score=128.24  Aligned_cols=237  Identities=13%  Similarity=0.087  Sum_probs=161.1

Q ss_pred             ceEEEEEcCCCCeEEE-EecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          152 RAHKLAIEPGSPHVFY-TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      ...++++++++ ++++ +...++.|..||..+..... +...         ....+.+++++++ ++++++.. ++.|.+
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~---------~~~~p~~i~~~~~-g~l~v~~~-~~~i~~   91 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTV-LPFN---------GLYQPQGLAVDGA-GTVYVTDF-NNRVVT   91 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EE-CCCC---------SCCSCCCEEECTT-CCEEEEET-TTEEEE
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccce-EeeC---------CcCCcceeEECCC-CCEEEEcC-CCEEEE
Confidence            67889999998 5666 55778899999976554221 1100         1224678999997 56665555 889999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      ||.......               .........+..++++|+|+++++.. ++.|.+|+..+...               
T Consensus        92 ~d~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------------  141 (270)
T 1rwi_B           92 LAAGSNNQT---------------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---------------  141 (270)
T ss_dssp             ECTTCSCCE---------------ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---------------
T ss_pred             EeCCCceEe---------------eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---------------
Confidence            998764321               01111224678999999999777765 56788886443110               


Q ss_pred             cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN  389 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  389 (458)
                                             .........  ...++++ +++|+++++...++.|.+||............+...+.
T Consensus       142 -----------------------~~~~~~~~~--~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~  195 (270)
T 1rwi_B          142 -----------------------TVLPFTGLN--DPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW  195 (270)
T ss_dssp             -----------------------EECCCCSCC--SCCCEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE
T ss_pred             -----------------------EeeccccCC--CceeEEE-eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce
Confidence                                   000001111  2567787 99999777777789999999876655443333335688


Q ss_pred             EEEecCCCCeEEEeecCCcEEEecCCcccccccc-cccccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712          390 CIEPHPHSTVLASSGIESDIKILTPNAADRATLP-TNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLV  457 (458)
Q Consensus       390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~  457 (458)
                      .++++++|.++++...++.|.+|+..+....... .+...+.+++++|+|.+.++...++.|.+++...
T Consensus       196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             EEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            9999999988877777899999999776544332 2335689999999999888888999999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.74  E-value=9.4e-14  Score=119.12  Aligned_cols=280  Identities=9%  Similarity=-0.001  Sum_probs=188.3

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      .....+.++++.++|++.++...++.|.+||.. ++............+.++++.+  ++.++++...++.|..+|.. +
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-C
Confidence            445678999999999988887778999999987 5543322233446789999998  99888877778889999976 4


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      +. ...........+..+++.+++ .++++...++.|..+|.. ++.. .+....        ....+..++++++ +++
T Consensus        93 ~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~--------~~~~~~~i~~d~~-g~l  159 (300)
T 2qc5_A           93 GF-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-EYDLPN--------KGSYPAFITLGSD-NAL  159 (300)
T ss_dssp             CE-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-EEECSS--------TTCCEEEEEECTT-SSE
T ss_pred             Ce-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-EccCCC--------CCCCceeEEECCC-CCE
Confidence            43 222233344678999999988 677777667899999987 5433 222110        1225789999997 566


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNP  297 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~  297 (458)
                      .++...++.|..+|. +++...              .........+..++++++|.++++... +.|..|+... ..   
T Consensus       160 ~v~~~~~~~i~~~~~-~g~~~~--------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~---  220 (300)
T 2qc5_A          160 WFTENQNNSIGRITN-TGKLEE--------------YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EI---  220 (300)
T ss_dssp             EEEETTTTEEEEECT-TCCEEE--------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CE---
T ss_pred             EEEecCCCeEEEECC-CCcEEE--------------eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cE---
Confidence            666666788999998 433211              001112346789999999988777664 4799998722 10   


Q ss_pred             CCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712          298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL  377 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  377 (458)
                                                        ....+.....  .+.++++ +++|++.++...++.|..|+. +++.
T Consensus       221 ----------------------------------~~~~~~~~~~--~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~  262 (300)
T 2qc5_A          221 ----------------------------------SEYDIPTPNA--RPHAITA-GKNSEIWFTEWGANQIGRITN-DNTI  262 (300)
T ss_dssp             ----------------------------------EEEECSSTTC--CEEEEEE-CSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred             ----------------------------------EEEECCCCCC--CceEEEE-CCCCCEEEeccCCCeEEEECC-CCcE
Confidence                                              0001111111  3678888 999987777766799999998 4543


Q ss_pred             EEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          378 IRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       378 ~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      ... +......+.++++.++|++.++.. . .|..+++
T Consensus       263 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          263 QEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             EEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            322 333345688999999998776655 4 6666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=3.9e-15  Score=125.65  Aligned_cols=241  Identities=9%  Similarity=0.015  Sum_probs=161.8

Q ss_pred             ceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC
Q 012712          106 NVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA  184 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  184 (458)
                      ...++++++  ++++++ +...++.|.+|+..+......  ...+...+.++++++++ .++++.. ++.|.+||.....
T Consensus        25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECT--TCCEEEEECSSSCEEEEECC-----EEC--CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECC--CCCEEEEccCCCCcEEEecCCCcccceE--eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence            678899999  998777 546788999998755433221  12233567889999998 5666655 8899999987654


Q ss_pred             ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccce
Q 012712          185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI  264 (458)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  264 (458)
                      .. .+...         ....+..++++|+ ++++++...++.|.+|+..+....               .........+
T Consensus        99 ~~-~~~~~---------~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~p  152 (270)
T 1rwi_B           99 QT-VLPFD---------GLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQT---------------VLPFTGLNDP  152 (270)
T ss_dssp             CE-ECCCC---------SCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCE---------------ECCCCSCCSC
T ss_pred             Ee-eeecC---------CcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeE---------------eeccccCCCc
Confidence            32 11110         1135789999997 577777777889999976543211               0011112357


Q ss_pred             eEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712          265 TGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV  343 (458)
Q Consensus       265 ~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (458)
                      .+++++++|+++++.. ++.|.+|+......                                      ......+..  
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--------------------------------------~~~~~~~~~--  192 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--------------------------------------VVLPFTDIT--  192 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTCCE--------------------------------------EECCCSSCC--
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCCce--------------------------------------EeecccCCC--
Confidence            8899999999777765 45899999765311                                      000011111  


Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                      .+.++++ +++|.++++...++.|.+|+............+...+.+++++|+|+++++...++.|+++++...+.
T Consensus       193 ~p~~i~~-d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          193 APWGIAV-DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             SEEEEEE-CTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CceEEEE-CCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            3678888 99998877777789999999865443332223335689999999999888888999999999887654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.73  E-value=2.9e-15  Score=131.71  Aligned_cols=291  Identities=14%  Similarity=0.093  Sum_probs=187.1

Q ss_pred             CCCCCeEEEeeCC-----CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec-
Q 012712            7 NNNNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS-   80 (458)
Q Consensus         7 ~~~~~~l~~~~~d-----~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-   80 (458)
                      +++++++++....     +.|.+.|..+++.+.+                     +..-..+  .+.++|||++|+++. 
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~---------------------I~vG~~P--gia~SpDgk~lyVan~  137 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGM---------------------TDGGFLP--HPVAAEDGSFFAQAST  137 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE---------------------EEECSSC--EEEECTTSSCEEEEEE
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE---------------------EECCCCC--ceEECCCCCEEEEEec
Confidence            5677777776543     6999999998887744                     4333345  799999999888775 


Q ss_pred             ---------CCCeEEEEECCCcceeeeeccC------CCcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceee
Q 012712           81 ---------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET  143 (458)
Q Consensus        81 ---------~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~  143 (458)
                               .++.|.++|..+++.+..+..+      .......+.|+|  |+++++.+..  ++.|.+.|+.+.+.+..
T Consensus       138 ~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~  215 (426)
T 3c75_H          138 VFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRM  215 (426)
T ss_dssp             EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             cccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence                     3678999999999987776322      123456789999  9999998874  57899999998887665


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      ..+.+      +....|++...+++.+.||.+.+.+..+++...... ... ...   .......+.+.+++ ..++...
T Consensus       216 I~v~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~-~v~---~~p~~~~~~~~~dg-~~~~~~s  283 (426)
T 3c75_H          216 LDVPD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVF-HTE---DELLINHPAFSLRS-GRLVWPT  283 (426)
T ss_dssp             EECCS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCC-SCT---TSCBCSCCEECTTT-CEEEEEB
T ss_pred             EEcCC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eee-ccC---CCceeeEeeecCCC-CEEEEEe
Confidence            33322      133455554667777788888888885554432111 000 000   00011235678874 4554556


Q ss_pred             CCCeEEEEecCCCccC--CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-----------CCcEEEEEcc
Q 012712          224 SDEYTRLYDIRKYKWD--GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQD  290 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~~~i~i~~~~  290 (458)
                      ..+.+.+.|.......  ........     ..............++++|+++.+....           .+.|.++|..
T Consensus       284 ~~g~V~ViD~~~~~~~v~~~~~~~~~-----~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          284 YTGKIFQADLTAEGATFRAPIEALTE-----AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             TTSEEEEEEECSSCEEECCCEESSCT-----TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             CCCcEEEEeccCCceEEeeeeeeccc-----cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence            6789999998654321  10000000     0000000112223478999987655542           2369999988


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEec-CCCeEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIF  368 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~-~dg~i~  368 (458)
                      +.                                      +.+..+....   ...+++| +|||+ ++++.. .++.|.
T Consensus       359 T~--------------------------------------kvv~~I~vg~---~P~gia~-spDg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          359 TG--------------------------------------ERINKIELGH---EIDSINV-SQDAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             TC--------------------------------------CEEEEEEEEE---EECEEEE-CCSSSCEEEEEETTTTEEE
T ss_pred             CC--------------------------------------eEEEEEECCC---CcCeEEE-ccCCCEEEEEEcCCCCeEE
Confidence            73                                      3444443222   2578888 99999 888877 589999


Q ss_pred             EEEecCCeEEEEe
Q 012712          369 IWKKKGGELIRVI  381 (458)
Q Consensus       369 iwd~~~~~~~~~~  381 (458)
                      ++|+.+++.++++
T Consensus       397 VID~~t~kvv~tI  409 (426)
T 3c75_H          397 IYDAATGEELRSV  409 (426)
T ss_dssp             EEETTTCCEEEEE
T ss_pred             EEECCCCCEEEEe
Confidence            9999999999887

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.69  E-value=1.7e-15  Score=145.32  Aligned_cols=273  Identities=8%  Similarity=-0.065  Sum_probs=165.3

Q ss_pred             CCeEEEEEcCCC---cEEEeecc--cccceeeee----ccccccceEEEEEcCCCCeEEEEe----cCCCeEEEEeCCCC
Q 012712          117 DDRSIVTCAADG---QVRHAQIL--ERGGVETKL----LGKHQGRAHKLAIEPGSPHVFYTC----GEDGLVQHFDLRTG  183 (458)
Q Consensus       117 ~~~~l~s~~~dg---~i~vw~~~--~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~  183 (458)
                      +|++++....++   .-.+|...  .+.......    -.+|...+..++|+|||..++++.    +.+..|++||+.++
T Consensus        78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg  157 (695)
T 2bkl_A           78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG  157 (695)
T ss_dssp             ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence            888887766543   34455443  333221110    123555789999999995444443    33468999999998


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe-------------EEEEecCCCccCCCccCCCCCCC
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-------------TRLYDIRKYKWDGSTDFGQPADY  250 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~~~  250 (458)
                      +.......          .......++|+|| ++.|+.++.+..             |++|++.+.+.....        
T Consensus       158 ~~~~~~~~----------~~~~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l--------  218 (695)
T 2bkl_A          158 EWSKVDVI----------EGGKYATPKWTPD-SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV--------  218 (695)
T ss_dssp             CBCSSCCB----------SCCTTCCCEECTT-SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE--------
T ss_pred             CCcCCccc----------CcccccceEEecC-CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE--------
Confidence            76411110          1111267899998 577877777665             999999876521110        


Q ss_pred             cCCCccccccccceeEEEeCCCCcEEEEec-CC----cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 012712          251 FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA  325 (458)
Q Consensus       251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (458)
                         ......+...+..+.|+|||++|+..+ ++    .+++++..++                                 
T Consensus       219 ---v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---------------------------------  262 (695)
T 2bkl_A          219 ---VHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---------------------------------  262 (695)
T ss_dssp             ---EECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---------------------------------
T ss_pred             ---EEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---------------------------------
Confidence               001112335688999999999887665 33    4666644321                                 


Q ss_pred             CcccccCceeecCccceeeeeEEEEecCCCcEEEEec---CCCeEEEEEecCCeE--EEEeecC--CceeeEEEecCCCC
Q 012712          326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRIFIWKKKGGEL--IRVIEAD--RHVVNCIEPHPHST  398 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~s~~~~  398 (458)
                            ....+..+...  +....+  ++|++++...   .++.|.+||+.+++.  ...+..+  ...+..++|+ ++.
T Consensus       263 ------~~~~l~~~~~~--~~~~~~--~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~  331 (695)
T 2bkl_A          263 ------DFRLLVKGVGA--KYEVHA--WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH  331 (695)
T ss_dssp             ------SCEEEEECSSC--CEEEEE--ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred             ------ceEEeecCCCc--eEEEEe--cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence                  12333333322  333333  5666444443   258999999987653  2333333  4568888998 778


Q ss_pred             eEEEeecCCcEEEecCC--cccccccccc-cccEEEEEEecCCcEEE----eeecCCceEEEEE
Q 012712          399 VLASSGIESDIKILTPN--AADRATLPTN-IEQVCFSIYSADYWWSK----SQNFSCSILLFEW  455 (458)
Q Consensus       399 ~l~s~~~d~~i~iw~~~--~~~~~~~~~~-~~~v~~~~~s~d~~~l~----s~~~d~~i~~w~~  455 (458)
                      ++++...|+..+||.+.  ++....+..+ .+.+..++++||+..++    +....++|++||.
T Consensus       332 lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          332 LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            88899999988888654  3333334333 55688889999997766    2334467888874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.69  E-value=3.8e-13  Score=115.30  Aligned_cols=276  Identities=9%  Similarity=-0.009  Sum_probs=185.8

Q ss_pred             CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC
Q 012712          103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT  182 (458)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  182 (458)
                      ....+.++++.+  ++.+.++...++.|.+|+.. ++.. ...+......+..+++.+++ .++++...++.|..+|.. 
T Consensus        18 ~~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           18 PDSGPYGITSSE--DGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             TTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-
T ss_pred             CCCCcceeeECC--CCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-
Confidence            345788999999  99888887778999999987 4332 22233344678899999998 677776667889999987 


Q ss_pred             CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc
Q 012712          183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV  262 (458)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (458)
                      ++. ..+....        ....+.++++.++ ++++++...++.|..+|.. ++....              .......
T Consensus        92 g~~-~~~~~~~--------~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~--------------~~~~~~~  146 (300)
T 2qc5_A           92 GGF-TEYPLPQ--------PDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-GTIYEY--------------DLPNKGS  146 (300)
T ss_dssp             SCE-EEEECSS--------TTCCEEEEEECST-TCEEEEETTTTEEEEECTT-SCEEEE--------------ECSSTTC
T ss_pred             CCe-EEecCCC--------CCCCCccceECCC-CCEEEEccCCCeEEEECCC-CCEEEc--------------cCCCCCC
Confidence            543 2222110        1135789999987 5677776668889999886 432100              0111234


Q ss_pred             ceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712          263 GITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN  341 (458)
Q Consensus       263 ~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (458)
                      .+..+++.++|+++++.. .+.|..++. ++..                                     ..........
T Consensus       147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-------------------------------------~~~~~~~~~~  188 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKL-------------------------------------EEYPLPTNAA  188 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-------------------------------------EEEECSSTTC
T ss_pred             CceeEEECCCCCEEEEecCCCeEEEECC-CCcE-------------------------------------EEeeCCCCCC
Confidence            678999999999777666 457988887 3210                                     0001111111


Q ss_pred             eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                        .+.++++ +++|++.++....+.|.+|+. +++.... +..+...+.+++++++|++.++...++.|..|+.. ++..
T Consensus       189 --~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~  263 (300)
T 2qc5_A          189 --APVGITS-GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ  263 (300)
T ss_dssp             --CEEEEEE-CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             --CcceEEE-CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE
Confidence              3678887 999988777777789999998 5554433 33345568899999999977777667899999984 4333


Q ss_pred             c--cccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          421 T--LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       421 ~--~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      .  +......+.+++++++|.+.++.. . .|..++
T Consensus       264 ~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~  297 (300)
T 2qc5_A          264 EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN  297 (300)
T ss_dssp             EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred             EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence            2  233345688999999998666544 4 565554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.67  E-value=2.8e-13  Score=118.80  Aligned_cols=275  Identities=9%  Similarity=-0.055  Sum_probs=173.7

Q ss_pred             EEecCCCEEEEecC--CC---eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCCcEEE
Q 012712           68 SFNTDGDILISGSD--DR---RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRH  132 (458)
Q Consensus        68 ~~s~~~~~l~s~~~--d~---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg~i~v  132 (458)
                      ...|+++++.+...  ..   .|.++|..+++.+..+..+ ..+  .++++|  |+++++.+.          .++.|.+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECC--CCCEEEEEeccccccccCCCCCeEEE
Confidence            34578887777653  22   8899999999987777433 233  999999  999998886          3678999


Q ss_pred             eecccccceeeeecc--c---cccceEEEEEcCCCCeEEEEec-C-CCeEEEEeCCCCCccce-eeecccCCCCcceeec
Q 012712          133 AQILERGGVETKLLG--K---HQGRAHKLAIEPGSPHVFYTCG-E-DGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVV  204 (458)
Q Consensus       133 w~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~  204 (458)
                      ||..+.+......+.  .   +......++++|+++ .|+.+. . ++.|.++| .+++.... +...            
T Consensus       102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------------  167 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------------  167 (373)
T ss_pred             EECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC------------
Confidence            999877665543332  0   012345799999995 455544 3 57899999 98877655 4321            


Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcE
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI  284 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i  284 (458)
                        .++.+.|++...+++.+.||.+.++|. +++....                         ....+   .         
T Consensus       168 --~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-------------------------~~~~~---~---------  207 (373)
T 2mad_H          168 --TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-------------------------GLVGA---M---------  207 (373)
T ss_pred             --ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-------------------------Eeccc---c---------
Confidence              234555665567777888999999998 6542100                         00000   0         


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                        +                                                 .+. .+ ......+ .+++..++..+..
T Consensus       208 --~-------------------------------------------------~~~-~p-~~~~~~~-~~~~~~~~~~~~~  233 (373)
T 2mad_H          208 --L-------------------------------------------------TAA-QN-LLTQPAQ-ANKSGRIVWPVYS  233 (373)
T ss_pred             --c-------------------------------------------------cCC-cc-eeeccee-EecCCEEEEEcCC
Confidence              0                                                 000 00 0111222 4444443333456


Q ss_pred             CeEEEEEecCCe--EEEEeec----------CCceeeEEEecCCCCeEEEeec----------CCcEEEecCCccccccc
Q 012712          365 GRIFIWKKKGGE--LIRVIEA----------DRHVVNCIEPHPHSTVLASSGI----------ESDIKILTPNAADRATL  422 (458)
Q Consensus       365 g~i~iwd~~~~~--~~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~----------d~~i~iw~~~~~~~~~~  422 (458)
                      +.+.+.|+....  .+..+..          .......++++||++.|.++..          ++.|.+.|..+++....
T Consensus       234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~  313 (373)
T 2mad_H          234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ  313 (373)
T ss_pred             ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence            788888876542  2222211          1122344789999988777543          35799999999887644


Q ss_pred             ccccccEEEEEEecCCc-EEEeee-cCCceEEEEE
Q 012712          423 PTNIEQVCFSIYSADYW-WSKSQN-FSCSILLFEW  455 (458)
Q Consensus       423 ~~~~~~v~~~~~s~d~~-~l~s~~-~d~~i~~w~~  455 (458)
                      ..-......++|+|||+ .++++. .++.|.++|.
T Consensus       314 i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          314 ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            44444688999999998 677766 5899999985

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.67  E-value=2.5e-14  Score=138.29  Aligned_cols=248  Identities=8%  Similarity=0.035  Sum_probs=151.0

Q ss_pred             cCCCceEEEEEecCCCEEEEecCC-----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc----
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ----  129 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~----  129 (458)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+...  .+...+..++|+|  | +.|+.++.++.    
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wsp--D-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLG--N-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEEST--T-SEEEEEECCCC----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEEC--C-CEEEEEEecCccccc
Confidence            344578899999999999876543     47999999998875432  1222346789999  9 88888776554    


Q ss_pred             ----------EEEeecccccceeeeec--cccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCC--Cccceee
Q 012712          130 ----------VRHAQILERGGVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTG--AATELFT  190 (458)
Q Consensus       130 ----------i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~--~~~~~~~  190 (458)
                                |++|++.++.......+  ..+...+..+.|+|+|.. |+..+.+     ..|++||+.++  +....+.
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~  313 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW-VVITSSEGTDPVNTVHVARVTNGKIGPVTALI  313 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE-EEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE-EEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence                      88999876653211112  233345889999999954 4444433     47999998876  3122222


Q ss_pred             ecccCCCCcceeecceEEEEECCCCCcEEEEecC----CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712          191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG  266 (458)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (458)
                      ..          ........ +|+ +..|+..+.    ++.|.+||+.+..                        ...  
T Consensus       314 ~~----------~~~~~~~~-~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~------------------------~~~--  355 (741)
T 1yr2_A          314 PD----------LKAQWDFV-DGV-GDQLWFVSGDGAPLKKIVRVDLSGST------------------------PRF--  355 (741)
T ss_dssp             CS----------SSSCEEEE-EEE-TTEEEEEECTTCTTCEEEEEECSSSS------------------------CEE--
T ss_pred             CC----------CCceEEEE-ecc-CCEEEEEECCCCCCCEEEEEeCCCCc------------------------ccc--
Confidence            11          11122222 355 344444433    2335555543310                        000  


Q ss_pred             EEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeee
Q 012712          267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK  346 (458)
Q Consensus       267 ~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  346 (458)
                                                                                        ...+..+..  .+.
T Consensus       356 ------------------------------------------------------------------~~l~~~~~~--~l~  367 (741)
T 1yr2_A          356 ------------------------------------------------------------------DTVVPESKD--NLE  367 (741)
T ss_dssp             ------------------------------------------------------------------EEEECCCSS--EEE
T ss_pred             ------------------------------------------------------------------EEEecCCCC--eEE
Confidence                                                                              001111111  245


Q ss_pred             EEEEecCCCcEEEEecCCCeEEEEEec-CCeEEEEeec-CCceeeEEEecCCCCeEEE----eecCCcEEEecCCccccc
Q 012712          347 GVNFFGPKCEYVVSGSDCGRIFIWKKK-GGELIRVIEA-DRHVVNCIEPHPHSTVLAS----SGIESDIKILTPNAADRA  420 (458)
Q Consensus       347 ~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s----~~~d~~i~iw~~~~~~~~  420 (458)
                      .+.+ + ++.++++...|+..+||.+. +++....+.. +.+.+..++++|+++.|+.    ....++|++||+.+++..
T Consensus       368 ~~~~-~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~  445 (741)
T 1yr2_A          368 SVGI-A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT  445 (741)
T ss_dssp             EEEE-E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred             EEEE-E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            5666 4 66788888889988777665 5666666764 3677899999999987663    334578999999887643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.67  E-value=1.5e-13  Score=118.69  Aligned_cols=249  Identities=16%  Similarity=0.152  Sum_probs=158.7

Q ss_pred             ecCCCceEEEEEecCCCEEEE-------ecCCCeEEEEECCCcceeeeec---cCCCcceeEEEEccCCC-CeEEEEEcC
Q 012712           58 DKHRGCVNTVSFNTDGDILIS-------GSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTD-DRSIVTCAA  126 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~~~l~s~~~  126 (458)
                      ...-....+++|+++|+++++       +..++.|.+||..+++......   .++...+.++++++  + ++++++...
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~--~~g~l~v~~~~   91 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADMR   91 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEETT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec--CCCcEEEEECC
Confidence            334456789999999988887       5678899999988777533221   12446789999999  8 776665554


Q ss_pred             CCcEEEeecccccceee-eec--cccccceEEEEEcCCCCeEEEEecCC---------------CeEEEEeCCCCCccce
Q 012712          127 DGQVRHAQILERGGVET-KLL--GKHQGRAHKLAIEPGSPHVFYTCGED---------------GLVQHFDLRTGAATEL  188 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~  188 (458)
                       +.|.+|+.. ++.... ...  ......+.++++++++ +++++...+               +.|..+|.. ++....
T Consensus        92 -~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (314)
T 1pjx_A           92 -LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV  167 (314)
T ss_dssp             -TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred             -CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence             478889987 443221 101  1122457899999998 566666544               456666654 332221


Q ss_pred             eeecccCCCCcceeecceEEEEEC----CCCCcE-EEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCcccccccc
Q 012712          189 FTCRPIDDRRNYMTVVNLNAIAID----PRNANL-FAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQV  262 (458)
Q Consensus       189 ~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~-l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (458)
                      ..           .......++++    |+ ++. +++...++.|.+||... ++                         
T Consensus       168 ~~-----------~~~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~-------------------------  210 (314)
T 1pjx_A          168 DT-----------AFQFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAK-------------------------  210 (314)
T ss_dssp             EE-----------EESSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTE-------------------------
T ss_pred             cc-----------CCCCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCc-------------------------
Confidence            11           11234667777    76 433 34444567777777641 11                         


Q ss_pred             ceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc-c
Q 012712          263 GITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-N  341 (458)
Q Consensus       263 ~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  341 (458)
                       +...                 .+                                              ...+..+. .
T Consensus       211 -~~~~-----------------~~----------------------------------------------~~~~~~~~~~  226 (314)
T 1pjx_A          211 -IENK-----------------KV----------------------------------------------WGHIPGTHEG  226 (314)
T ss_dssp             -EEEE-----------------EE----------------------------------------------EEECCCCSSC
T ss_pred             -cccc-----------------eE----------------------------------------------EEECCCCCCC
Confidence             0000                 00                                              00011111 1


Q ss_pred             eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeE-EEeecCCcEEEecCCc
Q 012712          342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL-ASSGIESDIKILTPNA  416 (458)
Q Consensus       342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~iw~~~~  416 (458)
                        ....+++ +++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+++.| ++...++.|..|++..
T Consensus       227 --~p~~i~~-d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          227 --GADGMDF-DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             --EEEEEEE-BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             --CCCceEE-CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence              2466777 9999988887778999999998787777777776789999999999944 5555678999998875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=9.4e-14  Score=116.58  Aligned_cols=247  Identities=8%  Similarity=0.015  Sum_probs=165.6

Q ss_pred             CCCEEEEecCCCeEEEEECCCcceeeeeccCCC-cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712           72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ  150 (458)
Q Consensus        72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  150 (458)
                      .+++|++++.++.|.+||.++++.+.++. .+. ..+.++.++|  +|+++++  .++.|..||. +++.+..... ...
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~p--dG~ilvs--~~~~V~~~d~-~G~~~W~~~~-~~~   76 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATK--AGEILFS--YSKGAKMITR-DGRELWNIAA-PAG   76 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECT--TSCEEEE--CBSEEEEECT-TSCEEEEEEC-CTT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECC--CCCEEEe--CCCCEEEECC-CCCEEEEEcC-CCC
Confidence            46789999999999999999999988884 443 5789999999  9998883  4678999998 7776655322 123


Q ss_pred             cceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR  229 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  229 (458)
                      ..+.++.+.|++ +++++.+. ++.|..+|. +++.+..+......  ..  .......+++.++ ++++++...++.|.
T Consensus        77 ~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~--~~--~~~~~~~v~~~~~-G~~lv~~~~~~~v~  149 (276)
T 3no2_A           77 CEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGI--ER--PHAQFRQINKNKK-GNYLVPLFATSEVR  149 (276)
T ss_dssp             CEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSC--SS--GGGSCSCCEECTT-SCEEEEETTTTEEE
T ss_pred             ccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC--Cc--ccccccCceECCC-CCEEEEecCCCEEE
Confidence            468889999999 67777666 778888885 67666665432210  01  1113445677887 78999999999999


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCcccccc
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      .||.. ++.......                ...+.++...++|.+++++.++ .|..+|..+++....+..        
T Consensus       150 ~~d~~-G~~~w~~~~----------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~--------  204 (276)
T 3no2_A          150 EIAPN-GQLLNSVKL----------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA--------  204 (276)
T ss_dssp             EECTT-SCEEEEEEC----------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG--------
T ss_pred             EECCC-CCEEEEEEC----------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC--------
Confidence            99987 664322111                1245567788999988887755 799999887543322110        


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC--------CeEEEEEe-cCCeEEE
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC--------GRIFIWKK-KGGELIR  379 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~  379 (458)
                                               ..+.+.. ...+..++. .++|+++++....        +..+++++ .+++.+-
T Consensus       205 -------------------------~~~~~~~-l~~~~~~~~-~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W  257 (276)
T 3no2_A          205 -------------------------NDIEGVQ-LFFVAQLFP-LQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW  257 (276)
T ss_dssp             -------------------------GGSBSCC-CSEEEEEEE-CTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred             -------------------------CCCCCcc-ccccccceE-cCCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence                                     0000101 113567776 8899888876321        23456665 4677777


Q ss_pred             EeecC
Q 012712          380 VIEAD  384 (458)
Q Consensus       380 ~~~~~  384 (458)
                      ++..+
T Consensus       258 ~~~~~  262 (276)
T 3no2_A          258 QLNDK  262 (276)
T ss_dssp             EECCT
T ss_pred             EecCc
Confidence            66543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.66  E-value=3e-14  Score=125.34  Aligned_cols=291  Identities=13%  Similarity=0.055  Sum_probs=181.8

Q ss_pred             cCCCEEEEecC-C----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCCcEEEeec
Q 012712           71 TDGDILISGSD-D----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQI  135 (458)
Q Consensus        71 ~~~~~l~s~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg~i~vw~~  135 (458)
                      ++++.+++... +    +.|.+.|..+++.+.++..+. .+  .++++|  |+++|+.+.          .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            46666555543 2    699999999999988885443 34  899999  999988876          3678999999


Q ss_pred             ccccceeeeeccc-----cccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          136 LERGGVETKLLGK-----HQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       136 ~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      .+.+......+.+     .......+.++|+++.++++... ++.|.+.|+.+++.+..+....              +.
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--------------~~  222 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--------------CY  222 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--------------EE
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--------------ce
Confidence            9988766543320     11234578999999544444333 6889999999998877765321              12


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT  288 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~  288 (458)
                      ...|++...+++.+.||.+.+.+..+++......          ..+..........+.+.+++..++..+ .+.+.+.|
T Consensus       223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD  292 (426)
T 3c75_H          223 HIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD  292 (426)
T ss_dssp             EEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred             eeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence            2334334555666667777777774443211000          000000011112356788876554444 56799999


Q ss_pred             ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc--eeecCccceeeeeEEEEecCCCcEEEEecC---
Q 012712          289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP--QVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---  363 (458)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~---  363 (458)
                      ...........                              ....  ........+.....+++ +|+++.+++...   
T Consensus       293 ~~~~~~~v~~~------------------------------~~~~~~~~i~~g~~p~g~~~va~-s~dg~rlyVa~~~~~  341 (426)
T 3c75_H          293 LTAEGATFRAP------------------------------IEALTEAERADDWRPGGWQQTAY-HRQSDRIYLLVDQRD  341 (426)
T ss_dssp             ECSSCEEECCC------------------------------EESSCTTTGGGTEEECSSSCEEE-EGGGTEEEEEEEECC
T ss_pred             ccCCceEEeee------------------------------eeeccccccccccccCCceeeEE-cCCCCEEEEEecccc
Confidence            86532100000                              0000  00000000001123566 999887776542   


Q ss_pred             -------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEee-cCCcEEEecCCccccccc
Q 012712          364 -------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRATL  422 (458)
Q Consensus       364 -------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~iw~~~~~~~~~~  422 (458)
                             .+.|.++|+.+.+.+.++... .....++|+|||+ +++++. .++.|.++|..+++....
T Consensus       342 ~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          342 EWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             cccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence                   357999999999999988643 3588999999999 888877 589999999999877633

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.65  E-value=4.6e-14  Score=136.43  Aligned_cols=276  Identities=9%  Similarity=-0.014  Sum_probs=164.7

Q ss_pred             ccCCCCeEEEEEcCCCc---EEEeeccc-----ccceeee----eccccccceEEEEEcCCCCeEEEEecCCC----eEE
Q 012712          113 MPFTDDRSIVTCAADGQ---VRHAQILE-----RGGVETK----LLGKHQGRAHKLAIEPGSPHVFYTCGEDG----LVQ  176 (458)
Q Consensus       113 ~~~~~~~~l~s~~~dg~---i~vw~~~~-----~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~  176 (458)
                      +|  +|++++....++.   -.+|....     ++.....    .-.+|...+..++|+|||..++++.+.+|    .|+
T Consensus       115 ~p--dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          115 QR--RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             EE--ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred             EE--ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence            37  8888877654432   55665532     2221110    01223346889999999955444444333    599


Q ss_pred             EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--------------eEEEEecCCCccCCCc
Q 012712          177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--------------YTRLYDIRKYKWDGST  242 (458)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~  242 (458)
                      +||+.+++......           ....+..++|+|| . .|+.+..++              .|++|++.+.......
T Consensus       193 v~dl~tg~~~~~~~-----------~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l  259 (741)
T 1yr2_A          193 FVGVADGKPLADEL-----------KWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP  259 (741)
T ss_dssp             EEETTTCCEEEEEE-----------EEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE
T ss_pred             EEECCCCCCCCccC-----------CCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE
Confidence            99999998654311           2222357899997 4 555554443              3889998765421110


Q ss_pred             cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-----cEEEEEccCCCCCCCCCCCCccccccccccCCCC
Q 012712          243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH  316 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (458)
                      .+           ....+...+..+.|+|||++|+..+ ++     .+++||+.++.                       
T Consensus       260 v~-----------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~-----------------------  305 (741)
T 1yr2_A          260 VF-----------ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK-----------------------  305 (741)
T ss_dssp             EE-----------CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE-----------------------
T ss_pred             Ee-----------ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC-----------------------
Confidence            00           0111223578999999999887655 22     59999987631                       


Q ss_pred             ccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC----CCeEEEEEecCC--eEEEEeecCCceeeE
Q 012712          317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD----CGRIFIWKKKGG--ELIRVIEADRHVVNC  390 (458)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~~~~v~~  390 (458)
                                   ......+..+...  .... + +|+|+.|+..+.    ++.|.+||+.++  +....+..+...+..
T Consensus       306 -------------~~~~~~l~~~~~~--~~~~-~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          306 -------------IGPVTALIPDLKA--QWDF-V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             -------------ECCCEEEECSSSS--CEEE-E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             -------------CcccEEecCCCCc--eEEE-E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                         0102333333322  2222 3 578888877664    456999999874  344444555556778


Q ss_pred             EEecCCCCeEEEeecCCcEEEecCC--ccccccccc-ccccEEEEEEecCCcEEEe----eecCCceEEEEE
Q 012712          391 IEPHPHSTVLASSGIESDIKILTPN--AADRATLPT-NIEQVCFSIYSADYWWSKS----QNFSCSILLFEW  455 (458)
Q Consensus       391 ~~~s~~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~-~~~~v~~~~~s~d~~~l~s----~~~d~~i~~w~~  455 (458)
                      ++|+ ++.++++...|+..+||.+.  ++....+.. +.+.+..++++||+..++.    ....++|++||.
T Consensus       369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            8887 66788888889987777554  333333432 3566889999999976652    234467888874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=6.5e-14  Score=122.19  Aligned_cols=279  Identities=10%  Similarity=0.064  Sum_probs=170.4

Q ss_pred             CceEEEEEecCCCEEEEec--CCCeEEEEECCCcceeeeec------cCCCcceeEEEEccCCCCeEEEEEcC-----CC
Q 012712           62 GCVNTVSFNTDGDILISGS--DDRRVILWDWKTERVKLSFH------SGHNDNVFQAKIMPFTDDRSIVTCAA-----DG  128 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~-----dg  128 (458)
                      .....++++|+|+++++..  .++.++||.+.+++. ..+.      ..+...+..+++.+  +++++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCCCcCCCC
Confidence            6789999999999988863  233356666554443 2221      23456899999999  8887666543     57


Q ss_pred             cEEEeecccccceeeeecc----ccccceEEEEEcCCCCeEEEEec---CCCeEEEEeCCCCCccceeeecccCCCCcce
Q 012712          129 QVRHAQILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCG---EDGLVQHFDLRTGAATELFTCRPIDDRRNYM  201 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  201 (458)
                      .|.+||+.+++......+.    .+...+..++++|++..++++..   .++.|.+||+.+++....+..+...      
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~------  167 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI------  167 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT------
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc------
Confidence            8999999887755443332    22345689999986546666665   6789999999888654433210000      


Q ss_pred             eecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712          202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND  281 (458)
Q Consensus       202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (458)
                      ....   ..+.++ +..+.+...++.+..|.                             ..+..++|+|+|+.|..+..
T Consensus       168 ~~~~---~~~~~~-g~~~~~~~~~g~~~~~~-----------------------------~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          168 APED---IDLVID-GVPVQIGQPDGTVIRPH-----------------------------LGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             SCCS---CCCEET-TEECBEECTTSCEECCC-----------------------------CCEEEEEECTTSCEEEEEES
T ss_pred             cccc---cceeEC-CEEEEeccCCCceecee-----------------------------cccceeEeccCCCEEEEEeC
Confidence            0000   223334 45666666676664442                             13578999999987777663


Q ss_pred             C--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712          282 E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV  359 (458)
Q Consensus       282 ~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~  359 (458)
                      .  .++.++....... .+.                          ......... ..++..  ....+++ +++|++++
T Consensus       215 ~~~~l~~~~~~~~~~~-~~~--------------------------~~~~~~~~~-~~g~~g--~pdgia~-d~~G~l~v  263 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNL-QLT--------------------------DAELGSKIE-RYSEKP--ICDGISI-DKDHNIYV  263 (343)
T ss_dssp             SCSEEEEEEHHHHTCT-TCC--------------------------HHHHHTTCE-EEEECC--SCSCEEE-CTTCCEEE
T ss_pred             CCCeEEEEEHHHhcCC-CCC--------------------------hhhhhcceE-ecccCC--CCceEEE-CCCCCEEE
Confidence            3  4555553210000 000                          000000001 111111  2456777 99999999


Q ss_pred             EecCCCeEEEEEecCCeEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          360 SGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      +...++.|.+||.++++....... +...+.+++|.++++++++.+..+.+.+|.
T Consensus       264 a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          264 GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             EccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            988899999999866764433332 234588999999999888877666555554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=6.2e-13  Score=118.39  Aligned_cols=240  Identities=10%  Similarity=-0.008  Sum_probs=157.0

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YT  228 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i  228 (458)
                      .....++|++++ +++++...++.|+.||+.++........           ..... ++|+|+ ++.++++..++  .|
T Consensus       131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~-----------~~~~~-ia~~~~-g~~l~~~d~~~~~~I  196 (409)
T 3hrp_A          131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPG-----------FKGGK-PAVTKD-KQRVYSIGWEGTHTV  196 (409)
T ss_dssp             CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEET-----------CCBCB-CEECTT-SSEEEEEBSSTTCEE
T ss_pred             CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeecc-----------CCCCc-eeEecC-CCcEEEEecCCCceE
Confidence            357789999998 6777777789999999988765444321           11233 899998 56777777655  78


Q ss_pred             EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccc
Q 012712          229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRS  307 (458)
Q Consensus       229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~  307 (458)
                      .+++..........           ..........+.+++++| ++.++++..++.|+.|+..++...            
T Consensus       197 ~~~d~~~~~~~~~~-----------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~------------  253 (409)
T 3hrp_A          197 YVYMKASGWAPTRI-----------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT------------  253 (409)
T ss_dssp             EEEEGGGTTCEEEE-----------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE------------
T ss_pred             EEEEcCCCceeEEe-----------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE------------
Confidence            88887654311000           000011234578899999 566666434557999998753210            


Q ss_pred             cccccCCCCccccCCCCCCcccccCcee--ecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEecCCeEEEEeecC
Q 012712          308 EASEMGSDHTSAASPSTANTDVRIAPQV--YKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGELIRVIEAD  384 (458)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (458)
                                              ....  ..+.....+...++| +|+ +.++++-..+++|+.|+.. ++ +..+.++
T Consensus       254 ------------------------~~~~~~~~g~~~~~P~~~ia~-~p~~g~lyv~d~~~~~I~~~~~~-g~-~~~~~g~  306 (409)
T 3hrp_A          254 ------------------------LIKQLELSGSLGTNPGPYLIY-YFVDSNFYMSDQNLSSVYKITPD-GE-CEWFCGS  306 (409)
T ss_dssp             ------------------------EEEECCCCSCCCCSSCCEEEE-ETTTTEEEEEETTTTEEEEECTT-CC-EEEEEEC
T ss_pred             ------------------------EEecccccCCCCCCccccEEE-eCCCCEEEEEeCCCCEEEEEecC-CC-EEEEEeC
Confidence                                    0000  111111100127888 994 6666666778999999875 33 3334333


Q ss_pred             C---------------ceeeEEEecCCCCeEEEee-cCCcEEEecCCcccccccccc---------------cccEEEEE
Q 012712          385 R---------------HVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLPTN---------------IEQVCFSI  433 (458)
Q Consensus       385 ~---------------~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~---------------~~~v~~~~  433 (458)
                      .               .....++++|+|+++++-. .+++|+.|++.+++...+.++               ......++
T Consensus       307 ~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia  386 (409)
T 3hrp_A          307 ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDIC  386 (409)
T ss_dssp             TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred             CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence            2               3478999999999887777 789999999777765544433               24588999


Q ss_pred             EecCCcEEEeeecCCceEEEE
Q 012712          434 YSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       434 ~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ++|+|.++++-..++.|+.+.
T Consensus       387 vd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          387 YDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             ECSSSEEEEEESTTCEEEEEE
T ss_pred             EcCCCCEEEEECCCCeEEEEE
Confidence            999998888877888887765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.61  E-value=3.1e-12  Score=109.21  Aligned_cols=226  Identities=8%  Similarity=0.014  Sum_probs=148.3

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      .-..+..|+|++..++++...++.|..||..+++. ..+.           ....+.+++++|+ ++++++ . ++.|.+
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-----------~~~~~~~i~~~~d-G~l~v~-~-~~~l~~   77 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-----------MDAPVSSVALRQS-GGYVAT-I-GTKFCA   77 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-----------CSSCEEEEEEBTT-SSEEEE-E-TTEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-----------CCCceEEEEECCC-CCEEEE-E-CCeEEE
Confidence            34567889997657888888899999999988764 2222           2235889999998 555444 3 567999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC----------CcEEEEEccCCCCCCCCCC
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----------EFIYLFTQDMGLGPNPPPS  300 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~i~i~~~~~~~~~~~~~~  300 (458)
                      ||..+++.......           ........+..++++|+|+++++...          ..-.+|.+...        
T Consensus        78 ~d~~~g~~~~~~~~-----------~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--------  138 (297)
T 3g4e_A           78 LNWKEQSAVVLATV-----------DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--------  138 (297)
T ss_dssp             EETTTTEEEEEEEC-----------CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--------
T ss_pred             EECCCCcEEEEEec-----------CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--------
Confidence            99887653211000           00012345788999999997776431          22345554321        


Q ss_pred             CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEe--cCCeE
Q 012712          301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKK--KGGEL  377 (458)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~--~~~~~  377 (458)
                                                   .. ...+.....  ....++| +||++.|+ +.+.++.|.+|++  .++..
T Consensus       139 -----------------------------g~-~~~~~~~~~--~pngi~~-spdg~~lyv~~~~~~~i~~~~~d~~~G~~  185 (297)
T 3g4e_A          139 -----------------------------HH-VKKYFDQVD--ISNGLDW-SLDHKIFYYIDSLSYSVDAFDYDLQTGQI  185 (297)
T ss_dssp             -----------------------------SC-EEEEEEEES--BEEEEEE-CTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred             -----------------------------CC-EEEEeeccc--cccceEE-cCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence                                         00 111111111  2567888 99998765 5556789999997  45543


Q ss_pred             E-----EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEe-cCCcEEEe
Q 012712          378 I-----RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYS-ADYWWSKS  443 (458)
Q Consensus       378 ~-----~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s-~d~~~l~s  443 (458)
                      .     ..+..+.+.+..++++++|++.++...++.|..|+..+++.. .+..+...+++++|+ ||++.|..
T Consensus       186 ~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          186 SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred             cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence            2     223334457889999999998888777889999999977655 444444679999999 89866543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=3.4e-12  Score=110.14  Aligned_cols=242  Identities=13%  Similarity=0.154  Sum_probs=154.5

Q ss_pred             cceEEEEEcCCCCeEEEE-------ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          151 GRAHKLAIEPGSPHVFYT-------CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      ....+++|++++ .++++       ...++.|..||..+++.... .....   .+  ....+.++++++++++++++ +
T Consensus        18 ~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~---~~--~~~~~~~i~~~~~~g~l~v~-~   89 (314)
T 1pjx_A           18 PGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEV---NG--YGGIPAGCQCDRDANQLFVA-D   89 (314)
T ss_dssp             TTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECCEE---TT--EECCEEEEEECSSSSEEEEE-E
T ss_pred             CCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Eeccc---CC--CCCCCceEEEecCCCcEEEE-E
Confidence            456789999988 67777       57788999999887765322 11000   01  22357899999973444444 4


Q ss_pred             CCCeEEEEecCCCccCCC-ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----------------cEEE
Q 012712          224 SDEYTRLYDIRKYKWDGS-TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----------------FIYL  286 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------------~i~i  286 (458)
                      ..+.|.+||.. ++.... ..           .........+..++++++|+++++...+                .+..
T Consensus        90 ~~~~l~~~d~~-g~~~~~~~~-----------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           90 MRLGLLVVQTD-GTFEEIAKK-----------DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             TTTEEEEEETT-SCEEECCSB-----------CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CCCCEEEEeCC-CCEEEEEec-----------cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence            44479999987 542110 00           0001123457899999999888776532                3555


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEec----CCCcEEEEe-
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG----PKCEYVVSG-  361 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s----~~~~~l~~~-  361 (458)
                      |+.. +                                      . ...+..+..  ....+++ +    |+++.|+.+ 
T Consensus       158 ~~~~-g--------------------------------------~-~~~~~~~~~--~~~~i~~-~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          158 FTTD-G--------------------------------------Q-MIQVDTAFQ--FPNGIAV-RHMNDGRPYQLIVAE  194 (314)
T ss_dssp             ECTT-S--------------------------------------C-EEEEEEEES--SEEEEEE-EECTTSCEEEEEEEE
T ss_pred             ECCC-C--------------------------------------C-EEEeccCCC--CcceEEE-ecccCCCCCEEEEEE
Confidence            5432 1                                      0 111111111  2456777 8    999765544 


Q ss_pred             cCCCeEEEEEec-CCeE-----EEEeecCC-ceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEE
Q 012712          362 SDCGRIFIWKKK-GGEL-----IRVIEADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSI  433 (458)
Q Consensus       362 ~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~  433 (458)
                      ..++.|++|+.. +++.     ...+..+. ..+..++++++|+++++...++.|.+|+..+++.. .+..+...+.+++
T Consensus       195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~  274 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH  274 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred             CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEE
Confidence            567899999986 4542     23334443 56889999999998888778899999999866544 3334446799999


Q ss_pred             EecCCcEE-EeeecCCceEEEEE
Q 012712          434 YSADYWWS-KSQNFSCSILLFEW  455 (458)
Q Consensus       434 ~s~d~~~l-~s~~~d~~i~~w~~  455 (458)
                      |+|+|++| ++...++.|..|+.
T Consensus       275 ~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          275 FKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCeEEEEeC
Confidence            99999855 45555678888874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=7.1e-14  Score=121.97  Aligned_cols=269  Identities=10%  Similarity=0.002  Sum_probs=162.4

Q ss_pred             cceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceee----eeccccccceEEEEEcCCCCeEEEEecC-----CC
Q 012712          105 DNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVET----KLLGKHQGRAHKLAIEPGSPHVFYTCGE-----DG  173 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----dg  173 (458)
                      .....++++|  +++.+++...  ++.++||.+.+++....    .....+...+..+++++++ +++++-..     ++
T Consensus        17 ~~p~~va~~~--~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTP--DGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECT--TSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred             CCcceEEECC--CCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence            6789999999  9999888642  34366666653322110    0012345678999999998 66555433     57


Q ss_pred             eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec---CCCeEEEEecCCCccCCCccCCCCCCC
Q 012712          174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG---SDEYTRLYDIRKYKWDGSTDFGQPADY  250 (458)
Q Consensus       174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~  250 (458)
                      .|.+||+.+++....+........    ....+..++++|+++..+++-.   .++.|.+||+.+++....         
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~----~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~---------  160 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITL----SNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV---------  160 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSC----TTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE---------
T ss_pred             eEEEEECCCCeEEEEEECChhhcc----cccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE---------
Confidence            899999999886666554221110    1224688999986555556555   678999999987653211         


Q ss_pred             cCCCccccccccc-eeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712          251 FCPPNLIGDEQVG-ITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD  328 (458)
Q Consensus       251 ~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (458)
                            ...|... .....+.++|..+.+.. ++.+..|.                                        
T Consensus       161 ------~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------------------------------  194 (343)
T 2qe8_A          161 ------LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------------------------------  194 (343)
T ss_dssp             ------CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------------------------------
T ss_pred             ------ecCCCcccccccceeECCEEEEeccCCCceecee----------------------------------------
Confidence                  1110000 00022333444433322 22232221                                        


Q ss_pred             cccCceeecCccceeeeeEEEEecCCCcEEEEecCCC-eEEEEEec---CCe-----EEE--EeecCCceeeEEEecCCC
Q 012712          329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKK---GGE-----LIR--VIEADRHVVNCIEPHPHS  397 (458)
Q Consensus       329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-~i~iwd~~---~~~-----~~~--~~~~~~~~v~~~~~s~~~  397 (458)
                                 .   .+..+++ +|||++|+.+..++ .++.++..   .+.     ...  ...++......++++++|
T Consensus       195 -----------~---~~~gia~-s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G  259 (343)
T 2qe8_A          195 -----------L---GVNGIVL-DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH  259 (343)
T ss_dssp             -----------C---CEEEEEE-CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC
T ss_pred             -----------c---ccceeEe-ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC
Confidence                       0   1567888 99999888877665 55555532   110     000  111334456789999999


Q ss_pred             CeEEEeecCCcEEEecCCccccccccc--ccccEEEEEEecCCcEEEeeecCCce
Q 012712          398 TVLASSGIESDIKILTPNAADRATLPT--NIEQVCFSIYSADYWWSKSQNFSCSI  450 (458)
Q Consensus       398 ~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~s~~~d~~i  450 (458)
                      .++++...++.|.+|+..+++...+..  ......+++|.++|.++++.+..+.+
T Consensus       260 ~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          260 NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             CEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            999998889999999995554433322  24458999999999877776644443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.58  E-value=1.7e-13  Score=118.69  Aligned_cols=293  Identities=10%  Similarity=-0.035  Sum_probs=178.9

Q ss_pred             CCCeEEEe-eCCC----cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec---
Q 012712            9 NNKRARTS-VDKA----LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS---   80 (458)
Q Consensus         9 ~~~~l~~~-~~d~----~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---   80 (458)
                      ...+++.. ..++    .|.+.|..+++.+.+                     +..-..+  .+.++||+++++++.   
T Consensus        30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~---------------------i~vG~~P--~i~~spDg~~lyVan~~~   86 (368)
T 1mda_H           30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGH---------------------SLGAFLS--LAVAGHSGSDFALASTSF   86 (368)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEE---------------------EEECTTC--EEEECTTSSCEEEEEEEE
T ss_pred             CCCeEEEECCccCCccceEEEEECCCCeEEEE---------------------EeCCCCC--ceEECCCCCEEEEEcccc
Confidence            33444444 4344    788999998887743                     4433345  799999999888875   


Q ss_pred             -------CCCeEEEEECCCcceeeeeccCC------CcceeEEEEccCCCCeEEEEEcC--CCcEEE--eecccccceee
Q 012712           81 -------DDRRVILWDWKTERVKLSFHSGH------NDNVFQAKIMPFTDDRSIVTCAA--DGQVRH--AQILERGGVET  143 (458)
Q Consensus        81 -------~d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~s~~~--dg~i~v--w~~~~~~~~~~  143 (458)
                             .++.|.+||+.+++.+.++..+.      ......++++|  |+++++++..  +..+.+  +|..+   +..
T Consensus        87 ~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp--DGk~lyVan~~~~~~v~V~~iD~~t---v~~  161 (368)
T 1mda_H           87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASD---DQL  161 (368)
T ss_dssp             TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred             cccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence                   36789999999999988874220      13466899999  9999998875  457888  99877   222


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-----CCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-----GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      ....+   .   ..+.|++...+++.+.|+.+.+.|+.+     ++...... ... ..    ...+.   . .++++. 
T Consensus       162 i~v~~---~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i-~v----g~~P~---~-~~~~~~-  224 (368)
T 1mda_H          162 TKSAS---C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQ-NC----SSQAA---Q-ANYPGM-  224 (368)
T ss_dssp             EECSS---C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTS-CB----CSCCE---E-ETTTTE-
T ss_pred             EECCC---c---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-eee-eC----CCCcc---c-cccCCE-
Confidence            11211   1   224466656677788889888888876     33221100 000 00    11122   3 555444 


Q ss_pred             EEEecCCCeEEEEecCCCc--cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe-c-C--------CcEEE
Q 012712          219 FAVAGSDEYTRLYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-D--------EFIYL  286 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-~--------~~i~i  286 (458)
                      ++..+. +.+.+.|.....  ......+...     ..............++++|+++.+..+ . .        +.+.+
T Consensus       225 ~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~-----~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V  298 (368)
T 1mda_H          225 LVWAVA-SSILQGDIPAAGATMKAAIDGNES-----GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             EEECBS-SCCEEEECCSSCCEEECCCCSSCT-----HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             EEEEcC-CEEEEEECCCCcceEEEEEEeccc-----cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence            444445 899999986532  1111100000     000000011122337899998866643 2 2        35679


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE-EEEec-CC
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY-VVSGS-DC  364 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-l~~~~-~d  364 (458)
                      +|+.+.                                      +.+..+....   ...++++ +|||++ +++.. .+
T Consensus       299 iD~~t~--------------------------------------~vv~~i~vg~---~p~gi~~-s~Dg~~l~va~~~~~  336 (368)
T 1mda_H          299 VTASVG--------------------------------------QTSGPISNGH---DSDAIIA-AQDGASDNYANSAGT  336 (368)
T ss_dssp             EESSSC--------------------------------------CEEECCEEEE---EECEEEE-CCSSSCEEEEEETTT
T ss_pred             EECCCC--------------------------------------eEEEEEECCC---CcceEEE-CCCCCEEEEEccCCC
Confidence            998874                                      2333333222   2678888 999984 45555 48


Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecC
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHP  395 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  395 (458)
                      +.|.++|+.+++.++++.... ....+++.+
T Consensus       337 ~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          337 EVLDIYDAASDQDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             TEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred             CeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence            999999999999999997554 345666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.58  E-value=2.1e-11  Score=104.06  Aligned_cols=240  Identities=12%  Similarity=0.116  Sum_probs=143.5

Q ss_pred             eecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           57 LDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        57 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      +..+..---+..|+|++ .++++...++.|..||..+++. ..+  .....+.+++++|  +++++++.  ++.|.+||.
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~--~~~~~~~~i~~~~--dG~l~v~~--~~~l~~~d~   80 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV--TMDAPVSSVALRQ--SGGYVATI--GTKFCALNW   80 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE--ECSSCEEEEEEBT--TSSEEEEE--TTEEEEEET
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE--eCCCceEEEEECC--CCCEEEEE--CCeEEEEEC
Confidence            34444556688999954 5666667789999999987765 233  2456799999999  99865554  467999998


Q ss_pred             ccccceeeeecc--ccccceEEEEEcCCCCeEEEEecCC---------CeEEEEeCCC-CCccceeeecccCCCCcceee
Q 012712          136 LERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRT-GAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       136 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      .+++........  .....++.++++|+| +++++...+         ..-.+|.+.. ++......           ..
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------~~  148 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-----------QV  148 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------EE
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-----------cc
Confidence            766543221111  122457889999999 455543221         1123333222 21111111           11


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF  283 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  283 (458)
                      ...+.++|+|++..++++.+.++.|..||+....                        +.+..                 
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~------------------------G~~~~-----------------  187 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT------------------------GQISN-----------------  187 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT------------------------CCEEE-----------------
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccCCC------------------------CcccC-----------------
Confidence            2345666666632333444455566666552100                        00000                 


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD  363 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~  363 (458)
                                                                    .+....+..+..  ....+++ +++|++.++...
T Consensus       188 ----------------------------------------------~~~~~~~~~~~~--~p~g~~~-d~~G~lwva~~~  218 (297)
T 3g4e_A          188 ----------------------------------------------RRSVYKLEKEEQ--IPDGMCI-DAEGKLWVACYN  218 (297)
T ss_dssp             ----------------------------------------------EEEEEECCGGGC--EEEEEEE-BTTSCEEEEEET
T ss_pred             ----------------------------------------------cEEEEECCCCCC--CCCeeEE-CCCCCEEEEEcC
Confidence                                                          000001111111  2567787 999988887777


Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEec-CCCCeEEEeec
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSGI  405 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~  405 (458)
                      ++.|.+||..+++.+..+..+...+++++|. |+++.|..++.
T Consensus       219 ~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          219 GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            8899999998899999998877789999998 88887655543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=5.4e-12  Score=112.35  Aligned_cols=270  Identities=10%  Similarity=0.033  Sum_probs=160.8

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--cEEEeeccccc
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERG  139 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~~  139 (458)
                      .....|+|+++++++++...++.|++||.+++...... .. ..... ++|+|  +++.|+++..++  .|.+++...+.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~-~~~~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PG-FKGGK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ET-CCBCB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-cc-CCCCc-eeEec--CCCcEEEEecCCCceEEEEEcCCCc
Confidence            35789999999998888888899999999877664433 22 23334 99999  999998888766  78888876554


Q ss_pred             ceeee-ec-cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712          140 GVETK-LL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       140 ~~~~~-~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      ..... .+ ......+.+++++|++..+++ +..++.|+.||..++... .+......   +.....+...++|+|+++.
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~~~---g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLELS---GSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECCCC---SCCCCSSCCEEEEETTTTE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEeccccc---CCCCCCccccEEEeCCCCE
Confidence            32221 11 214456788999995435544 667889999999877532 22111010   0001111128999996577


Q ss_pred             EEEEecCCCeEEEEecCCCccCCCccCCCC-CCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-cEEEEEccCCCC
Q 012712          218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQP-ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLG  294 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~~~~~~~~  294 (458)
                      ++++-..++.|+.|+....... .  .+.. .............-.....++++|+|+++++-. .+ .|+.|++.++..
T Consensus       281 lyv~d~~~~~I~~~~~~g~~~~-~--~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGECEW-F--CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEEEETTTTEEEEECTTCCEEE-E--EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEEEeCCCCEEEEEecCCCEEE-E--EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            7777778899999987643110 0  0000 000000000001123478999999999777765 44 799999655321


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccc-cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR-IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK  372 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~  372 (458)
                      . .+....            .        ....... .....+    .  ....+++ +++|.++++-..+++|+.+++
T Consensus       358 ~-~~~g~~------------~--------~~g~~~g~~~~~~~----~--~P~giav-d~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          358 S-TVAGQV------------D--------VASQIDGTPLEATF----N--YPYDICY-DGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             E-EEEECT------------T--------CBSCCCBSTTTCCB----S--SEEEEEE-CSSSEEEEEESTTCEEEEEEE
T ss_pred             E-EEeCCC------------C--------CCCcCCCChhceEe----C--CceEEEE-cCCCCEEEEECCCCeEEEEEe
Confidence            0 000000            0        0000000 000001    1  2578888 999988888888899998876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=8.6e-14  Score=120.68  Aligned_cols=181  Identities=11%  Similarity=0.162  Sum_probs=132.1

Q ss_pred             ceEEEEEecCCCEEEEecCCCeEEEEECCCcc---------eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           63 CVNTVSFNTDGDILISGSDDRRVILWDWKTER---------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      +++.+++++...++++|+.++ +++|++++.+         ........+.. |+.++|    ++++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence            689999999999999999985 6779876543         11111124566 999999    56788888 78999999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      |+.+......  ...|...+.++.+.+.  + +++++.||.|.+||+.++....              ....|.|++|+|
T Consensus       112 dv~sl~~~~~--~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~--------------~~~~Vs~v~WSp  172 (388)
T 1xip_A          112 DLEELSEFRT--VTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ--------------LAQNVTSFDVTN  172 (388)
T ss_dssp             ESSSTTCEEE--EEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE--------------EEESEEEEEECS
T ss_pred             EchhhhccCc--cceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc--------------ccCCceEEEEcC
Confidence            9987664333  4556677888777654  3 7888999999999999877543              122699999999


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCcc--CCCccCCCCCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec
Q 012712          214 RNANLFAVAGSDEYTRLYDIRKYKW--DGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       214 ~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      + +  ++.|..||.+++|+....+.  ....        .++..+..  .+...|.++.|.+++.++++..
T Consensus       173 k-G--~~vg~~dg~i~~~~~~~~~~~~k~~I--------~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          173 S-Q--LAVLLKDRSFQSFAWRNGEMEKQFEF--------SLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             S-E--EEEEETTSCEEEEEEETTEEEEEEEE--------CCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             C-c--eEEEEcCCcEEEEcCCCcccccccee--------cCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            8 4  67789999999998876652  1110        01111111  2568899999999999998744

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.55  E-value=4e-13  Score=116.34  Aligned_cols=283  Identities=6%  Similarity=-0.126  Sum_probs=172.7

Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCCcEEEeecccccceeeeecccc----
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADGQVRHAQILERGGVETKLLGKH----  149 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~----  149 (458)
                      +|.+.|..+++.+.++..+.. +  .+.++|  |+++++++.          .++.|.+||..+.+......+.+.    
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence            889999999999998865553 4  799999  999998886          368899999999888766433210    


Q ss_pred             -ccceEEEEEcCCCCeEEEEecC-CCeEEE--EeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712          150 -QGRAHKLAIEPGSPHVFYTCGE-DGLVQH--FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       150 -~~~v~~~~~~~~~~~~l~s~~~-dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                       ......++++|+++.++++... +..+.+  +|+.+   +..+...            .  +..+.|++...+++.+.|
T Consensus       122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~------------~--~~~~~p~g~~~~~~~~~d  184 (368)
T 1mda_H          122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA------------S--CFHIHPGAAATHYLGSCP  184 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS------------S--CCCCEEEETTEEECCCCT
T ss_pred             cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC------------C--ceEEccCCCeEEEEEcCC
Confidence             1235679999999554444323 467888  99877   3333211            0  112334445566677788


Q ss_pred             CeEEEEecCC-----CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC--CCC
Q 012712          226 EYTRLYDIRK-----YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP--NPP  298 (458)
Q Consensus       226 g~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~--~~~  298 (458)
                      |.+.+.|+.+     ++......           ....-...+.   +...++.++.+.. +.+.+.|.......  ..+
T Consensus       185 g~~~~vd~~~~~~~~~~v~~~~t-----------~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~  249 (368)
T 1mda_H          185 ASLAASDLAAAPAAAGIVGAQCT-----------GAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             TSCEEEECCSSCCCCEECCCCSC-----------TTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCC
T ss_pred             CCEEEEECccccccCCeEEEEee-----------eeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEE
Confidence            8888888876     33211000           0010012222   3334445555555 88888887642110  000


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC---------CCeEEE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---------CGRIFI  369 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~---------dg~i~i  369 (458)
                      ..                             ........+. .+.....+++ +||++.++.+..         ++.+.+
T Consensus       250 ~~-----------------------------~~~~~~~~~~-~p~g~~~v~~-s~dg~~lyV~~~~~~~~~~~~~~~~~V  298 (368)
T 1mda_H          250 DG-----------------------------NESGRKADNF-RSAGFQMVAK-LKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             CS-----------------------------SCTHHHHTTE-EECSSSCEEE-ETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             Ee-----------------------------cccccccccc-ccCcceeeEE-cCCCCEEEEEeccccCcccccCCCEEE
Confidence            00                             0000000000 0000112556 999998886543         235669


Q ss_pred             EEecCCeEEEEeecCCceeeEEEecCCCCe-EEEee-cCCcEEEecCCcccccccccccccEEEEEEe
Q 012712          370 WKKKGGELIRVIEADRHVVNCIEPHPHSTV-LASSG-IESDIKILTPNAADRATLPTNIEQVCFSIYS  435 (458)
Q Consensus       370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s  435 (458)
                      +|+.+.+.+.++.... ....++|+|||++ +++.. .++.|.++|+.+++......-......+++.
T Consensus       299 iD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~  365 (368)
T 1mda_H          299 VTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             EESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             EECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEee
Confidence            9999999998887543 5889999999985 55555 5899999999999877444433334444443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=7.7e-12  Score=108.15  Aligned_cols=221  Identities=10%  Similarity=0.002  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      .....|+|++..++++...++.|..||..+++.. .+.           ....+.+++++|+ ++++++. .+ .|.+||
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-----------~~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d  115 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-----------LPFMGSALAKISD-SKQLIAS-DD-GLFLRD  115 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-----------CSSCEEEEEEEET-TEEEEEE-TT-EEEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-----------CCCcceEEEEeCC-CeEEEEE-CC-CEEEEE
Confidence            4567899986578888888899999999876532 222           1225889999997 5665544 44 499999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-------CcEEEEEccCCCCCCCCCCCCccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-------EFIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------~~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      ..+++.......           ........+..++++|+|+++++...       +.|+.++  ++             
T Consensus       116 ~~~g~~~~~~~~-----------~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-------------  169 (326)
T 2ghs_A          116 TATGVLTLHAEL-----------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-------------  169 (326)
T ss_dssp             TTTCCEEEEECS-----------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-------------
T ss_pred             CCCCcEEEEeeC-----------CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-------------
Confidence            877653211000           00011246889999999997776542       2355555  21             


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEEec--CC-e-----
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKK--GG-E-----  376 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~--~~-~-----  376 (458)
                                               .. ..+.....  ....++| +||++.|+.+ +.++.|.+|++.  ++ +     
T Consensus       170 -------------------------~~-~~~~~~~~--~~~~i~~-s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~  220 (326)
T 2ghs_A          170 -------------------------KV-TKLFADIS--IPNSICF-SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE  220 (326)
T ss_dssp             -------------------------EE-EEEEEEES--SEEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred             -------------------------cE-EEeeCCCc--ccCCeEE-cCCCCEEEEEECCCCEEEEEEcccccCCcccCce
Confidence                                     11 11111111  2467888 9999876544 557899999985  55 3     


Q ss_pred             EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEe-cCCcEEEe
Q 012712          377 LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYS-ADYWWSKS  443 (458)
Q Consensus       377 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s  443 (458)
                      ....+......+..+++.++|.+.++...++.|.+|+........+..+...+++++|+ |++..|..
T Consensus       221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence            22233334456788999999998877766789999998543333444445569999999 89866543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.54  E-value=2.8e-12  Score=121.89  Aligned_cols=213  Identities=13%  Similarity=0.071  Sum_probs=123.6

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-Cce-EEEEEecCCCEEEEecCCCeEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      +.+|++++.++.|.-+|..+|+.+-+........            ...... ..+ ..+.+  ++..|+.++.|+.|..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A  135 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH------------RAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA  135 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGG------------GGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc------------ccccccccCCCCccEE--ECCEEEEEccCCEEEE
Confidence            5567788888999999999999875511000000            000000 000 11222  3567888889999999


Q ss_pred             EECCCcceeeeeccC-CCcceeEEEEccCC-CCeEEEEEc-----CCCcEEEeecccccceeeeeccc------------
Q 012712           88 WDWKTERVKLSFHSG-HNDNVFQAKIMPFT-DDRSIVTCA-----ADGQVRHAQILERGGVETKLLGK------------  148 (458)
Q Consensus        88 wd~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~------------  148 (458)
                      +|.++|+.+..+... +......+..+|.- ++..++..+     .+|.|..||..+++.+.......            
T Consensus       136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~  215 (689)
T 1yiq_A          136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM  215 (689)
T ss_dssp             EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred             EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence            999999988776432 21111111111100 454444332     36899999999998765532211            


Q ss_pred             -----------------cccceEEEEEcCCCCeEEEEecCCC-------------------eEEEEeCCCCCccceeeec
Q 012712          149 -----------------HQGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFTCR  192 (458)
Q Consensus       149 -----------------~~~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~  192 (458)
                                       ....-..++++|+. .+++.+..++                   .|..+|.++++.+..++..
T Consensus       216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~  294 (689)
T 1yiq_A          216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT  294 (689)
T ss_dssp             HHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred             cccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC
Confidence                             00111257888877 5677777765                   3999999999988777643


Q ss_pred             ccCCCCcceeecceEEEEECCCCCc---EEEEecCCCeEEEEecCCCccC
Q 012712          193 PIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       193 ~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      ..... ......++.......+ +.   .++.++.+|.++++|.++++.+
T Consensus       295 ~~d~w-d~~~~~~~~l~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          295 PGDAW-DYTATQHMILAELPID-GKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             TTCCS-CCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             Ccccc-cccCCCCcEEEeeccC-CcEEEEEEEECCCCeEEEEECCCCCEe
Confidence            21100 0001111111122223 33   7889999999999999998754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.54  E-value=2.1e-12  Score=123.63  Aligned_cols=122  Identities=14%  Similarity=0.140  Sum_probs=83.2

Q ss_pred             ecCCCceEEEEEecCCCEEEE-----ecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC----
Q 012712           58 DKHRGCVNTVSFNTDGDILIS-----GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG----  128 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg----  128 (458)
                      .+|...+..++|||||++||-     |+....|++||+.+++.+....  +......++|+   |++.|+.++.+.    
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws---Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL---GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE---TTTEEEEEESSCCC--
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe---CCCEEEEEEecCcccc
Confidence            356678999999999999984     3344689999999998654321  11123567887   677777777663    


Q ss_pred             ---------cEEEeecccccceeeeec--cc-cccceEEEEEcCCCCeEEEEecC---CCeEEEEeCCCCC
Q 012712          129 ---------QVRHAQILERGGVETKLL--GK-HQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGA  184 (458)
Q Consensus       129 ---------~i~vw~~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~  184 (458)
                               .|++|++.++.......+  .. |......+.|+|++..++++.+.   ...|+++|+.++.
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence                     399999877654222212  23 44457789999999666565543   3589999988764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.53  E-value=1.9e-13  Score=118.49  Aligned_cols=180  Identities=7%  Similarity=-0.008  Sum_probs=125.9

Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcE
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI  284 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i  284 (458)
                      +++.+++++. ..++++|+.++ +.+|++...+......   ... +.+.... .... |+.++|  ++.+|+++.++.|
T Consensus        39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~~-~~~~~~~-~lp~-V~~l~f--d~~~L~v~~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSD---STP-LTFKWEK-EIPD-VIFVCF--HGDQVLVSTRNAL  108 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSS---SCC-CCCSEEE-ECTT-EEEEEE--ETTEEEEEESSEE
T ss_pred             cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccc---ccc-ccceEEe-eCCC-eeEEEE--CCCEEEEEcCCcE
Confidence            5789999998 56888888875 6679976554100000   000 1111112 2345 999999  8899999877789


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      ++||+.+..                                      .......+...  +.++.+..|+   +++++.|
T Consensus       109 ~v~dv~sl~--------------------------------------~~~~~~~~~~~--v~~i~~~~p~---~av~~~d  145 (388)
T 1xip_A          109 YSLDLEELS--------------------------------------EFRTVTSFEKP--VFQLKNVNNT---LVILNSV  145 (388)
T ss_dssp             EEEESSSTT--------------------------------------CEEEEEECSSC--EEEEEECSSE---EEEEETT
T ss_pred             EEEEchhhh--------------------------------------ccCccceeecc--eeeEEecCCC---EEEEECC
Confidence            999988732                                      11222333332  5566663332   8888999


Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc---ccc------c---cccccEEEE
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR---ATL------P---TNIEQVCFS  432 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~---~~~------~---~~~~~v~~~  432 (458)
                      |.|.+||+.++....    +...|++++|||+|  ++.|..||++++|+....+.   ..+      .   .|...|.++
T Consensus       146 G~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI  219 (388)
T 1xip_A          146 NDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV  219 (388)
T ss_dssp             SEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE
T ss_pred             CCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE
Confidence            999999998877653    34579999999999  67889999999999887763   233      1   356779999


Q ss_pred             EEecCCcEEEe
Q 012712          433 IYSADYWWSKS  443 (458)
Q Consensus       433 ~~s~d~~~l~s  443 (458)
                      .|.+++.++++
T Consensus       220 ~wl~~~~flv~  230 (388)
T 1xip_A          220 TILSPQDFLAV  230 (388)
T ss_dssp             EESSSSEEEEE
T ss_pred             EEecCCeEEEE
Confidence            99999999887

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.53  E-value=6.1e-12  Score=107.86  Aligned_cols=229  Identities=11%  Similarity=0.048  Sum_probs=145.6

Q ss_pred             cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712          149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT  228 (458)
Q Consensus       149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  228 (458)
                      .........|+|++..++++...++.|..|+. +++ ...+..          ....+..++++++ ++++++...++.|
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~----------~~~~~~gl~~d~d-G~l~v~~~~~~~v  109 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD----------ATAFTNGNAVDAQ-QRLVHCEHGRRAI  109 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEE----------SCSCEEEEEECTT-SCEEEEETTTTEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeC----------CCCccceeeECCC-CCEEEEECCCCEE
Confidence            44456789999999668888888999999997 444 233321          2235789999998 5666665666789


Q ss_pred             EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE----ec--------------CCcEEEEEcc
Q 012712          229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS----YN--------------DEFIYLFTQD  290 (458)
Q Consensus       229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~--------------~~~i~i~~~~  290 (458)
                      .+|+.. ++.....           ..........+..++++|+|+++++    +.              .+.|+.|+..
T Consensus       110 ~~~~~~-g~~~~~~-----------~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A          110 TRSDAD-GQAHLLV-----------GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             EEECTT-SCEEEEE-----------CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred             EEECCC-CCEEEEE-----------eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence            999875 3311000           0001111234678999999998886    32              1246666654


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC------
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC------  364 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d------  364 (458)
                      ++.                                       ...+. ...  ....++| +||++.|+.+...      
T Consensus       178 ~g~---------------------------------------~~~~~-~~~--~p~gl~~-spdg~~lyv~~~~~~~~~~  214 (305)
T 3dr2_A          178 GSP---------------------------------------LQRMA-DLD--HPNGLAF-SPDEQTLYVSQTPEQGHGS  214 (305)
T ss_dssp             SCC---------------------------------------CEEEE-EES--SEEEEEE-CTTSSEEEEEECCC---CC
T ss_pred             CCc---------------------------------------EEEEe-cCC--CCcceEE-cCCCCEEEEEecCCcCCCC
Confidence            321                                       11111 111  2567888 9999988776654      


Q ss_pred             CeEEEEEecCCeEE--EEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEE
Q 012712          365 GRIFIWKKKGGELI--RVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWS  441 (458)
Q Consensus       365 g~i~iwd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  441 (458)
                      +.|++|++..+...  ..+ ....+.+..++++++|++.++. .+ .|.+|+.+......+..+ ..+.+++|+|+++.|
T Consensus       215 ~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~~~~~~~~~-~~~~~~~f~~d~~~L  291 (305)
T 3dr2_A          215 VEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQLLGHIPTP-GTASNCTFDQAQQRL  291 (305)
T ss_dssp             CEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSCEEEEEECS-SCCCEEEECTTSCEE
T ss_pred             CEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCCEEEEEECC-CceeEEEEeCCCCEE
Confidence            78999999765411  111 1123446788999999965544 44 499999865444333333 358899999999887


Q ss_pred             EeeecCC
Q 012712          442 KSQNFSC  448 (458)
Q Consensus       442 ~s~~~d~  448 (458)
                      ..++.++
T Consensus       292 ~it~~~~  298 (305)
T 3dr2_A          292 FITGGPC  298 (305)
T ss_dssp             EEEETTE
T ss_pred             EEEcCCe
Confidence            7766654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.52  E-value=1.3e-10  Score=100.53  Aligned_cols=230  Identities=12%  Similarity=0.087  Sum_probs=141.5

Q ss_pred             CceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           62 GCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        62 ~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      ....+..|+|++ .++++...++.|..||.++++.. .+  .....+.+++|+|  +++++++. .+ .|.+||..+++.
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~v~~i~~~~--dg~l~v~~-~~-gl~~~d~~~g~~  121 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGVL  121 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCCE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE--ECCCcceEEEEeC--CCeEEEEE-CC-CEEEEECCCCcE
Confidence            345678999975 45666667789999999877643 23  2346799999999  99887765 33 499999877654


Q ss_pred             eeeeecc--ccccceEEEEEcCCCCeEEEEecC------CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          141 VETKLLG--KHQGRAHKLAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       141 ~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                      .......  .....+..++++|+| +++++...      .+.|..++  +++......           .......++|+
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-----------~~~~~~~i~~s  187 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-----------DISIPNSICFS  187 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-----------EESSEEEEEEC
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-----------CCcccCCeEEc
Confidence            3221111  112468899999999 45554432      24455555  333221111           11235677888


Q ss_pred             CCCCcEEEEecCCCeEEEEecC--CC-ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712          213 PRNANLFAVAGSDEYTRLYDIR--KY-KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ  289 (458)
Q Consensus       213 p~~~~~l~~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~  289 (458)
                      |++..++++...++.|.+||+.  ++ +..                                +.+.+.            
T Consensus       188 ~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~--------------------------------~~~~~~------------  223 (326)
T 2ghs_A          188 PDGTTGYFVDTKVNRLMRVPLDARTGLPTG--------------------------------KAEVFI------------  223 (326)
T ss_dssp             TTSCEEEEEETTTCEEEEEEBCTTTCCBSS--------------------------------CCEEEE------------
T ss_pred             CCCCEEEEEECCCCEEEEEEcccccCCccc--------------------------------CceEEE------------
Confidence            8733333444556778888764  22 100                                000000            


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                                                                   .+.....  ....+++ +++|++.++...++.|.+
T Consensus       224 ---------------------------------------------~~~~~~~--~p~gi~~-d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          224 ---------------------------------------------DSTGIKG--GMDGSVC-DAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             ---------------------------------------------ECTTSSS--EEEEEEE-CTTSCEEEEEETTTEEEE
T ss_pred             ---------------------------------------------ECCCCCC--CCCeeEE-CCCCCEEEEEeCCCEEEE
Confidence                                                         0000001  1356676 899987777666789999


Q ss_pred             EEecCCeEEEEeecCCceeeEEEec-CCCCeEEEeec
Q 012712          370 WKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSGI  405 (458)
Q Consensus       370 wd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~  405 (458)
                      |+. +++.+..+..+...+++++|+ |+++.|+.++.
T Consensus       256 ~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          256 YDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            998 677778887777779999998 88876655443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.52  E-value=3.6e-11  Score=106.54  Aligned_cols=313  Identities=7%  Similarity=-0.062  Sum_probs=179.1

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCC--------CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGH--------NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK  144 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  144 (458)
                      +..++.++.++.|..+|.++++.+.......        ...+.+.-. .  ++..++.++.++.|..+|..+++.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-V--SGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-E--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-E--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            5677788888999999999999876653221        122322221 2  4557777888899999999988876554


Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      ......  ....... ++  .++.++.++.|..+|.++++.............     ..........   +..++++..
T Consensus       130 ~~~~~~--~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~---~~~v~~g~~  196 (376)
T 3q7m_A          130 KVAGEA--LSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-----LRGESAPTTA---FGAAVVGGD  196 (376)
T ss_dssp             ECSSCC--CSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCCCEEE---TTEEEECCT
T ss_pred             eCCCce--EcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-----ecCCCCcEEE---CCEEEEEcC
Confidence            333211  1111122 33  567788899999999999987766553211000     0000111222   236777888


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcc
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVS  304 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~  304 (458)
                      ++.+..+|..+++..-......+........+......+    .. .++.+++...++.+..+|..+++....       
T Consensus       197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p----~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~-------  264 (376)
T 3q7m_A          197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP----VV-VNGVVFALAYNGNLTALDLRSGQIMWK-------  264 (376)
T ss_dssp             TTEEEEEETTTCCEEEEEECCC-----------CCCCCC----EE-ETTEEEEECTTSCEEEEETTTCCEEEE-------
T ss_pred             CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc----EE-ECCEEEEEecCcEEEEEECCCCcEEee-------
Confidence            999999999887654332221110000000000000001    11 134444444477899999887532111       


Q ss_pred             ccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec-
Q 012712          305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA-  383 (458)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  383 (458)
                                                     ...  .  ....+..   ++..++.++.++.+..+|..+++.+..... 
T Consensus       265 -------------------------------~~~--~--~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~  306 (376)
T 3q7m_A          265 -------------------------------REL--G--SVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL  306 (376)
T ss_dssp             -------------------------------ECC--C--CEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTT
T ss_pred             -------------------------------ccC--C--CCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeeccc
Confidence                                           110  1  1223333   356777788899999999999998776652 


Q ss_pred             CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc-cccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN-IEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ....+.....  .+..|+.++.+|.|.++|..+++....... ...+.+..... +..|..++.+|.|..|+
T Consensus       307 ~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          307 LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred             CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence            2222333333  346788888899999999998876532211 22222211112 44566778999999886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.51  E-value=5.7e-11  Score=105.22  Aligned_cols=318  Identities=9%  Similarity=0.021  Sum_probs=180.1

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeec-CCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      .+.+|++++.++.|..+|.++|+.+.+....             ....... ....+.+.- ..++..++.++.++.|..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a  117 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLA-------------EKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYA  117 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECC-------------C---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCc-------------cccccccccCcccccCc-eEeCCEEEEEcCCCEEEE
Confidence            3567888888999999999999877431100             0000000 012232221 123556777888999999


Q ss_pred             EECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc---ceEEEEEcCCCCe
Q 012712           88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPH  164 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~  164 (458)
                      +|.++++.+.... ...........    .+..++.++.++.|..+|..+++............   ........ ++  
T Consensus       118 ~d~~tG~~~W~~~-~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~--  189 (376)
T 3q7m_A          118 LNTSDGTVAWQTK-VAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG--  189 (376)
T ss_dssp             EETTTCCEEEEEE-CSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT--
T ss_pred             EECCCCCEEEEEe-CCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC--
Confidence            9999999876652 22221122222    23467778889999999998888765533321110   00111222 23  


Q ss_pred             EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce-EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      .++.++.++.+..+|.++++.....................+ ......   +..++.++.++.+..+|.++++..-...
T Consensus       190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~  266 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFALAYNGNLTALDLRSGQIMWKRE  266 (376)
T ss_dssp             EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE---TTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE---CCEEEEEecCcEEEEEECCCCcEEeecc
Confidence            467788899999999999987765543211000000000000 001111   2467777889999999998876432211


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPS  323 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (458)
                                       ......+... ++.+++...++.+..+|..+++....                          
T Consensus       267 -----------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~--------------------------  302 (376)
T 3q7m_A          267 -----------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWT--------------------------  302 (376)
T ss_dssp             -----------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEE--------------------------
T ss_pred             -----------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEe--------------------------
Confidence                             1122333332 44455555567899999887542211                          


Q ss_pred             CCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeE-EEecCCCCeEEE
Q 012712          324 TANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNC-IEPHPHSTVLAS  402 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s  402 (458)
                                  ....... .......   .+..|+.++.+|.++.+|..+++.+.........+.. ...  .+..|+.
T Consensus       303 ------------~~~~~~~-~~~~~~~---~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v  364 (376)
T 3q7m_A          303 ------------QSDLLHR-LLTSPVL---YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLI  364 (376)
T ss_dssp             ------------ECTTTTS-CCCCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEE
T ss_pred             ------------ecccCCC-cccCCEE---ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEE
Confidence                        1100000 0111222   2457888888999999999999998877653333322 222  2456777


Q ss_pred             eecCCcEEEec
Q 012712          403 SGIESDIKILT  413 (458)
Q Consensus       403 ~~~d~~i~iw~  413 (458)
                      ++.+|.|..|+
T Consensus       365 ~~~~G~l~~~~  375 (376)
T 3q7m_A          365 QAKDGTVYSIT  375 (376)
T ss_dssp             EBTTSCEEEEE
T ss_pred             EeCCCEEEEEe
Confidence            88899999886

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.51  E-value=5.7e-12  Score=119.51  Aligned_cols=212  Identities=12%  Similarity=0.003  Sum_probs=123.7

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      +.+|++++.++.|.-+|..+|+.+-+...........       .  ...+ ..-..+++  ++..|+.++.|+.|..+|
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~-------~--~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD  144 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGF-------K--GCCD-VVNRGVAL--WKGKVYVGAWDGRLIALD  144 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGG-------G--SSSC-SCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc-------c--cccc-CCCCCceE--ECCEEEEEcCCCEEEEEE
Confidence            4567777778899999999998875411100000000       0  0000 00012233  356788888999999999


Q ss_pred             CCCcceeeeeccCCC----cceeEEEEccCCCCeEEEEEcC------CCcEEEeecccccceeeeeccccc---------
Q 012712           90 WKTERVKLSFHSGHN----DNVFQAKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQ---------  150 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~~~~~~~---------  150 (458)
                      ..+|+.+.++.....    ..+...-...  ++ .++.++.      +|.|..+|..+++.+.........         
T Consensus       145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~  221 (677)
T 1kb0_A          145 AATGKEVWHQNTFEGQKGSLTITGAPRVF--KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES  221 (677)
T ss_dssp             TTTCCEEEEEETTTTCCSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred             CCCCCEEeeecCCcCcCcCcccccCcEEE--CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence            999998877732201    1122111111  44 4444442      689999999999876553322111         


Q ss_pred             ---------------------cceEEEEEcCCCCeEEEEecCCC-------------------eEEEEeCCCCCccceee
Q 012712          151 ---------------------GRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELFT  190 (458)
Q Consensus       151 ---------------------~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~  190 (458)
                                           .....++++|++ .+++.+..++                   .|..+|.++++....++
T Consensus       222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~  300 (677)
T 1kb0_A          222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ  300 (677)
T ss_dssp             HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             cccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence                                 111357888887 4666666553                   59999999999887776


Q ss_pred             ecccCCCCcceeecceEEEEECCCCC---cEEEEecCCCeEEEEecCCCccC
Q 012712          191 CRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       191 ~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      ........ .........+....+ +   ..++.++.+|.++++|.++++.+
T Consensus       301 ~~~~d~wd-~~~~~~p~l~~~~~d-G~~~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          301 ETPGDNWD-YTSTQPMILADIKIA-GKPRKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             SSTTCCSC-CCCCSCCEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cCCCcccc-cccCCCcEEEecccC-CcEeeEEEEECCCCEEEEEECCCCCEe
Confidence            43211100 001112222333334 4   68899999999999999998754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.51  E-value=3.3e-11  Score=104.67  Aligned_cols=231  Identities=12%  Similarity=0.047  Sum_probs=142.3

Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCC----CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC------CeEE
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTG----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTR  229 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~  229 (458)
                      ++++.+++.+..++.|.++|+.+.    +..+.+...+.....   .......+.+.|+ + +++++..+      |.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~---g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS---GYSRLHTVHCGPD-A-IYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH---CEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc---CCCcccceeECCC-e-EEEEcCCCcCCCCCCeEE
Confidence            778778888888999999998754    222222100000000   1123566788898 5 66665555      7899


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--------------------CCcEEEEEc
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--------------------DEFIYLFTQ  289 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------------------~~~i~i~~~  289 (458)
                      ++|..+.+.......+.            .....-..+.|+|+++.+++..                    .++|.+||+
T Consensus       168 vlD~~T~~v~~~~~~~~------------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDR------------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             EECTTTCCEEEECCSBC------------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             EEECCCCeEEEEEccCC------------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence            99999887654432211            1112234578899999888874                    568999999


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE-ecCCCcEEEEecC-----
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSD-----  363 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~~l~~~~~-----  363 (458)
                      .+.                                      +....+.-.........+.| ++|++++++++++     
T Consensus       236 ~~~--------------------------------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~  277 (462)
T 2ece_A          236 RKR--------------------------------------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD  277 (462)
T ss_dssp             TTT--------------------------------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred             CCC--------------------------------------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence            863                                      22333332111111333433 4999999888774     


Q ss_pred             -CCeEEEEEecCCeEE--EEe--ecC----------------CceeeEEEecCCCCeEEEeec-CCcEEEecCCccc---
Q 012712          364 -CGRIFIWKKKGGELI--RVI--EAD----------------RHVVNCIEPHPHSTVLASSGI-ESDIKILTPNAAD---  418 (458)
Q Consensus       364 -dg~i~iwd~~~~~~~--~~~--~~~----------------~~~v~~~~~s~~~~~l~s~~~-d~~i~iw~~~~~~---  418 (458)
                       +++|.+|..+.++..  +.+  ...                ...+..+.+||||++|.++.. .+.|.+|++....   
T Consensus       278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~  357 (462)
T 2ece_A          278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPV  357 (462)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence             568888877655321  111  110                134788999999998877655 6899999986331   


Q ss_pred             cc-ccccc--------------cccEEEEEEecCCcEEEeee
Q 012712          419 RA-TLPTN--------------IEQVCFSIYSADYWWSKSQN  445 (458)
Q Consensus       419 ~~-~~~~~--------------~~~v~~~~~s~d~~~l~s~~  445 (458)
                      +. .+...              .+.-..+++||||++|..+.
T Consensus       358 lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          358 LTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            11 11111              01257799999999998877

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.50  E-value=2.4e-11  Score=104.14  Aligned_cols=239  Identities=10%  Similarity=0.032  Sum_probs=151.5

Q ss_pred             EeecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712           56 KLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ  134 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~  134 (458)
                      .+..+........|+|+|+ ++++...++.|..|+. +++. ..+ ..+...+..+++++  +++++++...++.|.+|+
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~-~~~~~~~~gl~~d~--dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVL-LDATAFTNGNAVDA--QQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEE-EESCSCEEEEEECT--TSCEEEEETTTTEEEEEC
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEE-eCCCCccceeeECC--CCCEEEEECCCCEEEEEC
Confidence            3445556678899999998 6677777899999997 4443 333 34566789999999  998777766678899999


Q ss_pred             cccccceeee-eccc-cccceEEEEEcCCCCeEEEE----ecC-------------CCeEEEEeCCCCCccceeeecccC
Q 012712          135 ILERGGVETK-LLGK-HQGRAHKLAIEPGSPHVFYT----CGE-------------DGLVQHFDLRTGAATELFTCRPID  195 (458)
Q Consensus       135 ~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~  195 (458)
                      .. ++..... ...+ ....+..++++|+| .++++    +..             .+.|..+|..+++..... .    
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~----  186 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D----  186 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E----
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c----
Confidence            75 4322110 0111 12346789999999 56665    332             256888887766644322 1    


Q ss_pred             CCCcceeecceEEEEECCCCCcEEEEecCC------CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEe
Q 012712          196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF  269 (458)
Q Consensus       196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  269 (458)
                             ......++|+|+ ++.|+++...      +.|++|++........            .............+++
T Consensus       187 -------~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~------------~~~~~~~~~~pdgi~~  246 (305)
T 3dr2_A          187 -------LDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDR------------RHFASVPDGLPDGFCV  246 (305)
T ss_dssp             -------ESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEE------------EEEECCSSSCCCSEEE
T ss_pred             -------CCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCC------------eEEEECCCCCCCeEEE
Confidence                   113578999998 5666665554      7899999875431000            0011111234567899


Q ss_pred             CCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEE
Q 012712          270 SDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN  349 (458)
Q Consensus       270 ~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  349 (458)
                      +++|++.++. .+.|.+|+...                                       .....+....   .+.+++
T Consensus       247 d~~G~lwv~~-~~gv~~~~~~g---------------------------------------~~~~~~~~~~---~~~~~~  283 (305)
T 3dr2_A          247 DRGGWLWSSS-GTGVCVFDSDG---------------------------------------QLLGHIPTPG---TASNCT  283 (305)
T ss_dssp             CTTSCEEECC-SSEEEEECTTS---------------------------------------CEEEEEECSS---CCCEEE
T ss_pred             CCCCCEEEec-CCcEEEECCCC---------------------------------------CEEEEEECCC---ceeEEE
Confidence            9999966555 55699998743                                       2233333332   267788


Q ss_pred             EecCCCcEEEEecCCCeEEEEE
Q 012712          350 FFGPKCEYVVSGSDCGRIFIWK  371 (458)
Q Consensus       350 ~~s~~~~~l~~~~~dg~i~iwd  371 (458)
                      | +++++.|+.++.++ ++.++
T Consensus       284 f-~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          284 F-DQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             E-CTTSCEEEEEETTE-EEEEE
T ss_pred             E-eCCCCEEEEEcCCe-EEEEE
Confidence            8 89998888777654 44333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.46  E-value=1.4e-11  Score=118.05  Aligned_cols=237  Identities=11%  Similarity=0.035  Sum_probs=147.8

Q ss_pred             cccceEEEEEcCCCCeEEEEecCC----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          149 HQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       149 ~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      +...+..++|+|||..++++.+..    ..|++||+.+++......           .......++|+ | ++.|+.+..
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-----------~~~k~~~~~Ws-D-g~~l~y~~~  193 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-----------KDVKFSGISWL-G-NEGFFYSSY  193 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-----------EEEESCCCEEE-T-TTEEEEEES
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-----------CCceeccEEEe-C-CCEEEEEEe
Confidence            445688899999996555444333    479999999998644311           11123577899 8 566666665


Q ss_pred             CC-------------eEEEEecCCCccCCCccCCCCCCCcCCCcccc--c-cccceeEEEeCCCCcEEEEec----C-Cc
Q 012712          225 DE-------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG--D-EQVGITGLAFSDQSELLVSYN----D-EF  283 (458)
Q Consensus       225 dg-------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~l~~~~----~-~~  283 (458)
                      +.             .|++|++.+......             .+..  . +......+.|+|||++|+...    . ..
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  260 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDDR-------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNR  260 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGCE-------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccce-------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence            53             499999877542111             1111  1 233567899999999876433    1 26


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-Eec
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGS  362 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~  362 (458)
                      ++++|+.++.                                     .....+..+...  .... + +++|+.|+ ...
T Consensus       261 i~~~d~~~~~-------------------------------------~~~~~l~~~~~~--~~~~-~-~~~g~~l~~~t~  299 (693)
T 3iuj_A          261 LYVKDLSQEN-------------------------------------APLLTVQGDLDA--DVSL-V-DNKGSTLYLLTN  299 (693)
T ss_dssp             EEEEETTSTT-------------------------------------CCCEEEECSSSS--CEEE-E-EEETTEEEEEEC
T ss_pred             EEEEECCCCC-------------------------------------CceEEEeCCCCc--eEEE-E-eccCCEEEEEEC
Confidence            8999987631                                     122334333332  2222 3 55555554 443


Q ss_pred             C---CCeEEEEEecCCeE--EEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEecCCcccccccc-cccccEEEEE
Q 012712          363 D---CGRIFIWKKKGGEL--IRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAADRATLP-TNIEQVCFSI  433 (458)
Q Consensus       363 ~---dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~-~~~~~v~~~~  433 (458)
                      .   .+.|..+++.++..  .+.+..|...+.  .|+++++.|+....++   .|++|++.++....+. ...+.+..+.
T Consensus       300 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~  377 (693)
T 3iuj_A          300 RDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFN  377 (693)
T ss_dssp             TTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECC
T ss_pred             CCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeee
Confidence            3   36899999987654  345666665554  8999999887765544   6899999876554433 2345577888


Q ss_pred             EecCCcEEEeeecC----CceEEEE
Q 012712          434 YSADYWWSKSQNFS----CSILLFE  454 (458)
Q Consensus       434 ~s~d~~~l~s~~~d----~~i~~w~  454 (458)
                      ++|++..++....+    +.|..||
T Consensus       378 ~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          378 GKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             CCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             cCCCCCEEEEEecCCCCCCEEEEEE
Confidence            89999666554433    5666665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.46  E-value=1.7e-09  Score=105.54  Aligned_cols=327  Identities=10%  Similarity=0.080  Sum_probs=197.3

Q ss_pred             eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712           64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET  143 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  143 (458)
                      |.++...+++.+.+ ++.++-|..|+..+++............|.++...+  ++.+.+.. .++.+..|+..+++....
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g~lwigt-~~~Gl~~~~~~~~~~~~~  250 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQS--PTRIWVAT-EGAGLFLINPKTKEIKNY  250 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEE--TTEEEEEE-BSSCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC--CCCEEEEE-CCCCeEEEeCCCCeEEEe
Confidence            88898888887555 555445889998776643322122356788888887  77765544 334488888766543221


Q ss_pred             eec-----cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          144 KLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       144 ~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      ...     .-....|.++...+++ . +..|+.+ -|.+||..+++...... ...  .........|.++...++ + .
T Consensus       251 ~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~-~~~--~~~~l~~~~i~~i~~D~~-g-~  322 (795)
T 4a2l_A          251 LHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSS-NPV--ENGSLSQRSVRSIFMDSQ-G-G  322 (795)
T ss_dssp             CCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECC-CTT--STTSCSSSCEEEEEECTT-S-C
T ss_pred             ecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEec-CCC--CCCCCCCCcEEEEEEeCC-c-C
Confidence            100     0123568999999888 4 4445555 58889987664332111 100  000112346899999887 3 4


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~  298 (458)
                      +..|+.++-|..|+..+.........         .....-....|.++...++|.+.+...++.+..|+..++..    
T Consensus       323 lWigt~~~Gl~~~~~~~~~~~~~~~~---------~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~----  389 (795)
T 4a2l_A          323 MWLGTYFGGLNYYHPIRNRFKNIRNI---------PYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF----  389 (795)
T ss_dssp             EEEEESSSCEEEECGGGGSSEEECCC---------TTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE----
T ss_pred             EEEEECCCCeEEeCCCcccceEEcCC---------CCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE----
Confidence            66677777799998765532110000         00001123568999999999877766666899998765321    


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecC-------ccceeeeeEEEEecCCCcEEEEecCCCeEEEEE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-------HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK  371 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd  371 (458)
                                                         ..+..       ......|.+++. +++|+.|..|+.++-|.+||
T Consensus       390 -----------------------------------~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          390 -----------------------------------TSYTLQEDESARGIGSNNIKAVYV-DEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             -----------------------------------EEECCC------CCSCSCEEEEEE-ETTTTEEEEEETTTEEEEEE
T ss_pred             -----------------------------------EEEecCCCCcccCCCCccEEEEEE-cCCCCEEEEEeCcCceeEEe
Confidence                                               01100       000113788887 88888566677777899999


Q ss_pred             ecCCeEEEEee----cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc-------ccccEEEEEEecCCcE
Q 012712          372 KKGGELIRVIE----ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-------NIEQVCFSIYSADYWW  440 (458)
Q Consensus       372 ~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-------~~~~v~~~~~s~d~~~  440 (458)
                      ..+++......    .....|.++...++|.+.+...  +-|.+|+..+++...+..       ....|.++...++|.+
T Consensus       434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  511 (795)
T 4a2l_A          434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL  511 (795)
T ss_dssp             TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred             CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence            87776433221    1345689999988888665443  458889988765443321       1245899999999955


Q ss_pred             EEeeecCCceEEEEE
Q 012712          441 SKSQNFSCSILLFEW  455 (458)
Q Consensus       441 l~s~~~d~~i~~w~~  455 (458)
                      .+.. . +-|..|+.
T Consensus       512 Wigt-~-~Gl~~~~~  524 (795)
T 4a2l_A          512 WIGG-E-EGLSVFKQ  524 (795)
T ss_dssp             EEEE-S-SCEEEEEE
T ss_pred             EEEe-C-CceEEEeC
Confidence            4332 3 34666653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.43  E-value=9.3e-12  Score=108.22  Aligned_cols=296  Identities=13%  Similarity=0.062  Sum_probs=178.8

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      +..|..++.++.|..|| .+|+.+..                     ...+...+.++...++|. |..++.+  |..+|
T Consensus        30 ~g~l~v~t~~~~l~~~d-~~g~~~~~---------------------~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d   84 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAIN-TDGSVKWF---------------------FKSGEIIECRPSIGKDGT-IYFGSDK--VYAIN   84 (330)
T ss_dssp             TSCEECSSTTTTTEEEC-TTSCEEES---------------------SCGGGEEEECCEETTTTE-ECCSSCE--EEEEC
T ss_pred             CCeEEEEcCCCEEEEEC-CCCcEEEE---------------------EecCCCcccceEEecCCc-EEEecCc--EEEEC
Confidence            34567777788888999 77776532                     222334556777777775 4455554  88888


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC  169 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  169 (458)
                      . +++....+ .............    +..|..++.++.+..+|.. ++....  .......+.++...+++ . ++.+
T Consensus        85 ~-~g~~~~~~-~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~--~~~~~~~~~~~~~~~~g-~-l~vg  153 (330)
T 3hxj_A           85 P-DGTEKWRF-DTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWR--FKTKKAIYATPIVSEDG-T-IYVG  153 (330)
T ss_dssp             C-CGGGGGGS-CC-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEE--EECSSCCCSCCEECTTS-C-EEEE
T ss_pred             C-CCcEEEEE-ECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEE--EcCCCceeeeeEEcCCC-E-EEEE
Confidence            6 56554443 2222222233332    3456777778899999987 554443  22233445666777777 4 5667


Q ss_pred             cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712          170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD  249 (458)
Q Consensus       170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  249 (458)
                      +.++.|..+|.. ++....+...          ...+.++...++ +. +..++  +.|..+| .+++....        
T Consensus       154 t~~~~l~~~d~~-g~~~~~~~~~----------~~~~~~~~~d~~-g~-l~v~t--~~l~~~d-~~g~~~~~--------  209 (330)
T 3hxj_A          154 SNDNYLYAINPD-GTEKWRFKTN----------DAITSAASIGKD-GT-IYFGS--DKVYAIN-PDGTEKWN--------  209 (330)
T ss_dssp             CTTSEEEEECTT-SCEEEEEECS----------SCCCSCCEECTT-CC-EEEES--SSEEEEC-TTSCEEEE--------
T ss_pred             cCCCEEEEECCC-CCEeEEEecC----------CCceeeeEEcCC-CE-EEEEe--CEEEEEC-CCCcEEEE--------
Confidence            788999999988 7655544321          123556667665 44 44455  7799999 55432211        


Q ss_pred             CcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712          250 YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV  329 (458)
Q Consensus       250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (458)
                             .......+.++...++|.+.+...++.+..++....                                     
T Consensus       210 -------~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~-------------------------------------  245 (330)
T 3hxj_A          210 -------FYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT-------------------------------------  245 (330)
T ss_dssp             -------ECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC-------------------------------------
T ss_pred             -------EccCCcceeceEECCCCeEEEEcCCCeEEEECCCCC-------------------------------------
Confidence                   111224577888888888777766778888864321                                     


Q ss_pred             ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcE
Q 012712          330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI  409 (458)
Q Consensus       330 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i  409 (458)
                        ....+.....  .+..+.. .+++ .|..++.+|.|..+|. +++.+..+......+.++...++|++. .++.+|.+
T Consensus       246 --~~~~~~~~~~--~~~~~~~-~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~  317 (330)
T 3hxj_A          246 --EKWRFKTGKR--IESSPVI-GNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKF  317 (330)
T ss_dssp             --EEEEEECSSC--CCSCCEE-CTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCE
T ss_pred             --EeEEeeCCCC--ccccceE-cCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeE
Confidence              1111111111  1223333 5555 4556777889999996 777777776556667788887887754 57889999


Q ss_pred             EEecCCcc
Q 012712          410 KILTPNAA  417 (458)
Q Consensus       410 ~iw~~~~~  417 (458)
                      ++...+..
T Consensus       318 ~~~~~~~~  325 (330)
T 3hxj_A          318 YALFNLEH  325 (330)
T ss_dssp             EEEEC---
T ss_pred             EEEecccc
Confidence            98876543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.41  E-value=1.1e-11  Score=107.87  Aligned_cols=298  Identities=10%  Similarity=0.061  Sum_probs=177.5

Q ss_pred             EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee
Q 012712           66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL  145 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  145 (458)
                      ++.+..++. |..++.++.|..|| .+++..... ......+.++...+  ++. |..++.+  +..+|. +++....  
T Consensus        24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~--~g~-l~v~t~~--l~~~d~-~g~~~~~--   92 (330)
T 3hxj_A           24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGK--DGT-IYFGSDK--VYAINP-DGTEKWR--   92 (330)
T ss_dssp             CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETT--TTE-ECCSSCE--EEEECC-CGGGGGG--
T ss_pred             CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEec--CCc-EEEecCc--EEEECC-CCcEEEE--
Confidence            344545554 56677788899999 888776554 23344456677765  665 4445444  888885 4444332  


Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      ............+. ++  .++.++.++.|..+|.. ++........          ...+.++...++ + .++.++.+
T Consensus        93 ~~~~~~~~~~~~~~-~~--~l~v~t~~~~l~~~d~~-g~~~~~~~~~----------~~~~~~~~~~~~-g-~l~vgt~~  156 (330)
T 3hxj_A           93 FDTKKAIVSDFTIF-ED--ILYVTSMDGHLYAINTD-GTEKWRFKTK----------KAIYATPIVSED-G-TIYVGSND  156 (330)
T ss_dssp             SCC-----CCEEEE-TT--EEEEECTTSEEEEECTT-SCEEEEEECS----------SCCCSCCEECTT-S-CEEEECTT
T ss_pred             EECCCCcccCceEE-CC--EEEEEecCCEEEEEcCC-CCEEEEEcCC----------CceeeeeEEcCC-C-EEEEEcCC
Confidence            22122222223333 43  46778888999999988 6654443321          112455566665 3 46667888


Q ss_pred             CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712          226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST  305 (458)
Q Consensus       226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  305 (458)
                      +.|..+|.. ++.....               ......+.++...+++.+++..  +.+..+| .++..           
T Consensus       157 ~~l~~~d~~-g~~~~~~---------------~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~-----------  206 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRF---------------KTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTE-----------  206 (330)
T ss_dssp             SEEEEECTT-SCEEEEE---------------ECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCE-----------
T ss_pred             CEEEEECCC-CCEeEEE---------------ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE-----------
Confidence            999999987 5432111               1112345667777888766655  8899998 44211           


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCC
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR  385 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  385 (458)
                                                 ...+.....  .+.++.. +++|.+ ..++.++.+..+|. +++.+..+....
T Consensus       207 ---------------------------~~~~~~~~~--~~~~~~~-~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~  254 (330)
T 3hxj_A          207 ---------------------------KWNFYAGYW--TVTRPAI-SEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGK  254 (330)
T ss_dssp             ---------------------------EEEECCSSC--CCSCCEE-CTTSCE-EEEETTTEEEEECT-TSCEEEEEECSS
T ss_pred             ---------------------------EEEEccCCc--ceeceEE-CCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCC
Confidence                                       111111111  2556666 777754 45666788888874 666666666554


Q ss_pred             ceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       386 ~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ..+..+...+++. |..++.+|.|..++. +++.. ........+.++...++|.+. .++.+|.+++...
T Consensus       255 ~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~  322 (330)
T 3hxj_A          255 RIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFN  322 (330)
T ss_dssp             CCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC
T ss_pred             CccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEec
Confidence            4455666666664 556777888999996 44332 332233446677777888755 5788998887654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.40  E-value=4.2e-14  Score=124.31  Aligned_cols=142  Identities=15%  Similarity=0.204  Sum_probs=79.1

Q ss_pred             CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc
Q 012712           72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG  151 (458)
Q Consensus        72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~  151 (458)
                      ++..+++++.|+.|..||..+|+.+.++. .  +.+.+..+.+  ++..+++++.||.|..||..+++.+..  ...+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEE--CSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCceeee--eeccCc
Confidence            57789999999999999999999988773 2  4555555555  777888888999999999988876544  222211


Q ss_pred             -ceE-EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712          152 -RAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR  229 (458)
Q Consensus       152 -~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  229 (458)
                       .+. +..+. .+ ..+++++.++.++.||.++++....+....              ...++|+ +..+++++.++.|+
T Consensus        81 ~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--------------~~~~~p~-~~~v~~~~~dg~v~  143 (369)
T 2hz6_A           81 ELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--------------ADSLSPS-TSLLYLGRTEYTIT  143 (369)
T ss_dssp             HHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------------EEEEEEEEEEE
T ss_pred             cccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC--------------ccccccc-CCEEEEEecCCEEE
Confidence             111 01111 23 357788889999999999998876654211              1234565 56788888889999


Q ss_pred             EEecCCCc
Q 012712          230 LYDIRKYK  237 (458)
Q Consensus       230 i~d~~~~~  237 (458)
                      .||.++++
T Consensus       144 a~d~~tG~  151 (369)
T 2hz6_A          144 MYDTKTRE  151 (369)
T ss_dssp             CCCSSSSS
T ss_pred             EEECCCCC
Confidence            99988765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.39  E-value=6.4e-08  Score=94.47  Aligned_cols=329  Identities=9%  Similarity=0.030  Sum_probs=196.8

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec------cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ  134 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~  134 (458)
                      ...|.++...++|.+.+ |+.+| |.+|+..++.......      .-....|.++...+  +|. |..|+.++-|..++
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--~g~-lWigt~~~Gl~~~~  336 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS--QGG-MWLGTYFGGLNYYH  336 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT--TSC-EEEEESSSCEEEEC
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC--CcC-EEEEECCCCeEEeC
Confidence            36799999998887655 44444 8899987765432211      11235799999987  765 55566667788888


Q ss_pred             cccccceeeeecc----ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          135 ILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       135 ~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      ..+..........    -....|.++...+++ . |..|+.++-|..||..+++...........  ........|.++.
T Consensus       337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~--~~~l~~~~v~~i~  412 (795)
T 4a2l_A          337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFTSYTLQEDES--ARGIGSNNIKAVY  412 (795)
T ss_dssp             GGGGSSEEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEEEECCC--------CCSCSCEEEEE
T ss_pred             CCcccceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEEEEecCCCCc--ccCCCCccEEEEE
Confidence            7654322111000    123568999998888 4 566777777999998776543221100000  0000224688998


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEcc
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD  290 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~  290 (458)
                      ..++ ++.|..|+.++-|..||..+++......          . ........|.++...++|.+.+... +.+.+|+..
T Consensus       413 ~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~~~~----------~-~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~  479 (795)
T 4a2l_A          413 VDEK-KSLVYIGTHAGGLSILHRNSGQVENFNQ----------R-NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPE  479 (795)
T ss_dssp             EETT-TTEEEEEETTTEEEEEETTTCCEEEECT----------T-TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETT
T ss_pred             EcCC-CCEEEEEeCcCceeEEeCCCCcEEEeec----------C-CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCC
Confidence            8876 5547777777779999988765321100          0 0001235789999999998777665 679999976


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      ++..... .                                ... .........|.++.. +++|++.+...  +-+..|
T Consensus       480 ~~~~~~~-~--------------------------------~~~-~~~~~~~~~i~~i~~-d~~g~lWigt~--~Gl~~~  522 (795)
T 4a2l_A          480 QRSFTTI-E--------------------------------KEK-DGTPVVSKQITTLFR-DSHKRLWIGGE--EGLSVF  522 (795)
T ss_dssp             TTEEEEC-C--------------------------------BCT-TCCBCCCCCEEEEEE-CTTCCEEEEES--SCEEEE
T ss_pred             CCeEEEc-c--------------------------------ccc-cccccCCceEEEEEE-CCCCCEEEEeC--CceEEE
Confidence            5311000 0                                000 000001123778877 88887666544  458889


Q ss_pred             EecCCeEEEEee-------cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc----cccEEEEEEecCCc
Q 012712          371 KKKGGELIRVIE-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN----IEQVCFSIYSADYW  439 (458)
Q Consensus       371 d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~----~~~v~~~~~s~d~~  439 (458)
                      |..+++.  .+.       .....|.++...++|.+.++.. . -|..|+..+++...+...    ...|.++...++|.
T Consensus       523 ~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~  598 (795)
T 4a2l_A          523 KQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGR  598 (795)
T ss_dssp             EEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSC
T ss_pred             eCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCC
Confidence            9887765  332       1234688999999998666443 3 678888876654433211    23488899998886


Q ss_pred             EEEeeecCCceEEEE
Q 012712          440 WSKSQNFSCSILLFE  454 (458)
Q Consensus       440 ~l~s~~~d~~i~~w~  454 (458)
                      +.++. .. -|..|+
T Consensus       599 lWi~t-~~-Gl~~~~  611 (795)
T 4a2l_A          599 LWLST-NR-GISCFN  611 (795)
T ss_dssp             EEEEE-TT-EEEEEE
T ss_pred             EEEEc-CC-ceEEEc
Confidence            55443 33 344443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.33  E-value=3.5e-13  Score=118.45  Aligned_cols=184  Identities=12%  Similarity=0.020  Sum_probs=105.6

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW   88 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw   88 (458)
                      ++.+|++++.||.|+.||..+|+.+.+                     +..  +.+.+..+..++..+++++.|+.|+.|
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---------------------~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~   64 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT---------------------LKE--DPVLQVPTHVEEPAFLPDPNDGSLYTL   64 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE---------------------EEC--CCSCCCC-----CCEEECTTTCCEEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE---------------------ecC--CCceecceEcCCCEEEEeCCCCEEEEE
Confidence            467899999999999999999998744                     222  344455556678788888899999999


Q ss_pred             ECCCcceeeeeccCCCc-ceeEEEEccCC-CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712           89 DWKTERVKLSFHSGHND-NVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF  166 (458)
Q Consensus        89 d~~~~~~~~~~~~~~~~-~i~~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  166 (458)
                      |.++++.+..+. .+.. .+.   .+|.. ++..+++++.++.+..||..+++....  +..+.    ...++|++ ..+
T Consensus        65 d~~tG~~~w~~~-~~~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~--~~~~~----~~~~~p~~-~~v  133 (369)
T 2hz6_A           65 GSKNNEGLTKLP-FTIPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT--LSSAF----ADSLSPST-SLL  133 (369)
T ss_dssp             -----CCSEECS-CCHHHHHT---TCSCC-----CCCCEEEEEEEEECCC-----------------------------E
T ss_pred             ECCCCceeeeee-ccCccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEE--ecCCC----cccccccC-CEE
Confidence            999888765552 2211 111   11211 445677888899999999999887654  33222    23456666 578


Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC--CcEEEEecCCCeEEEEecCCCcc
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN--ANLFAVAGSDEYTRLYDIRKYKW  238 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~  238 (458)
                      ++++.|+.|+.||.++++....+....            ....++.++.  ...+++++.+|.++.||.++++.
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRWNATYFD------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCCEEEEEE------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             EEEecCCEEEEEECCCCCEEEeEeccc------------ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            888999999999999998776654211            1222333321  14677788999999999998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.33  E-value=2.9e-10  Score=108.13  Aligned_cols=316  Identities=10%  Similarity=-0.004  Sum_probs=171.4

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec------CC
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------DD   82 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~d   82 (458)
                      .+.+|+.++.|+.|..+|.+||+.+.+.....     +.      .........++    + .++. ++.++      .+
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~-----~~------~~~~~~~~sP~----v-~~g~-v~vg~~~~~~~~~  182 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA-----DH------KRSYTITGAPR----V-VNGK-VVIGNGGAEFGVR  182 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCS-----CT------TSCCBCCSCCE----E-ETTE-EEECCBCTTTCCB
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcC-----CC------CCCccccCCcE----E-ECCE-EEEEeCCCccCCC
Confidence            35678889999999999999999875411000     00      00000001111    1 1444 44443      36


Q ss_pred             CeEEEEECCCcceeeeeccCC------------------------------CcceeEEEEccCCCCeEEEEEcCCCc---
Q 012712           83 RRVILWDWKTERVKLSFHSGH------------------------------NDNVFQAKIMPFTDDRSIVTCAADGQ---  129 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~------------------------------~~~i~~~~~~~~~~~~~l~s~~~dg~---  129 (458)
                      +.|..||..+|+.+.++....                              ......+++.|  +..+++.+..++.   
T Consensus       183 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          183 GYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSC
T ss_pred             CEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccc
Confidence            899999999999877663211                              01112578888  8888888887763   


Q ss_pred             ----------------EEEeecccccceeeeeccccc-------cceEEEEEcCCCC--eEEEEecCCCeEEEEeCCCCC
Q 012712          130 ----------------VRHAQILERGGVETKLLGKHQ-------GRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGA  184 (458)
Q Consensus       130 ----------------i~vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~  184 (458)
                                      |..+|..+++.+.......|.       .+........++.  ..++.++.+|.++++|.++++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                            999999999887664433332       1122222222441  378889999999999999998


Q ss_pred             ccceeeecccCC-----------------------CC------cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          185 ATELFTCRPIDD-----------------------RR------NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       185 ~~~~~~~~~~~~-----------------------~~------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      .+.........-                       ..      +......-..++++|+ ..++++...+....++....
T Consensus       341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~-~~~~yv~~~~~~~~~~~~~~  419 (689)
T 1yiq_A          341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD-TGLVYIPAHIMSAYYEHIPE  419 (689)
T ss_dssp             EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT-TTEEEEEEEECCEEEECCSS
T ss_pred             EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC-CCEEEEeccccceeeeeccc
Confidence            874433221000                       00      0000001123678887 45777776665555544332


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC---cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      ... ..  ..       ......   +..  +...|..   ....... ++.++.||+.+++...               
T Consensus       420 ~~~-~~--~~-------~~~~~~---g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W---------------  469 (689)
T 1yiq_A          420 APK-RN--PF-------KSMYQL---GLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW---------------  469 (689)
T ss_dssp             CCC-CC--SC-------TTSCCC---SSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE---------------
T ss_pred             ccc-cc--cc-------cccccc---Ccc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEe---------------
Confidence            100 00  00       000000   000  0001100   0000001 2467888887753221               


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce-eeE
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV-VNC  390 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~  390 (458)
                                             .+..+..   .....+ ...+.+++.|+.||.++.||.++|+.+.+++...+. ..-
T Consensus       470 -----------------------~~~~~~~---~~~g~~-~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p  522 (689)
T 1yiq_A          470 -----------------------EVPYVTI---FNGGTL-STAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAP  522 (689)
T ss_dssp             -----------------------EEEESSS---CCCCEE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             -----------------------EccCCCC---ccCccc-eECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCc
Confidence                                   1111111   111223 556778999999999999999999999888755332 244


Q ss_pred             EEecCCCCeEE
Q 012712          391 IEPHPHSTVLA  401 (458)
Q Consensus       391 ~~~s~~~~~l~  401 (458)
                      +.|..+|+..+
T Consensus       523 ~ty~~~G~qyv  533 (689)
T 1yiq_A          523 VTYSVDGEQYV  533 (689)
T ss_dssp             EEEEETTEEEE
T ss_pred             eEEEECCEEEE
Confidence            66778887543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.32  E-value=1.1e-08  Score=85.68  Aligned_cols=252  Identities=11%  Similarity=0.053  Sum_probs=150.4

Q ss_pred             CEEEEecCCCeEEEEECCCccee----eeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccceeeeeccc
Q 012712           74 DILISGSDDRRVILWDWKTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGK  148 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~  148 (458)
                      ++|+.+.. +.|+.++++.....    ..........+..++|.|  ++..|+ +-..++.|..++.........  ...
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~   76 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTTI--IRQ   76 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEEE--ECT
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEEE--EEC
Confidence            34555443 47888887754321    111111234578999998  655554 555578999999865443221  222


Q ss_pred             cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC--CC
Q 012712          149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--DE  226 (458)
Q Consensus       149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg  226 (458)
                      .......++++|++..++++....+.|.++++...... .+...         .......++++|+++.++++...  .+
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~---------~~~~P~~i~vd~~~g~lyv~~~~~~~~  146 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLFDT---------GLVNPRGIVTDPVRGNLYWTDWNRDNP  146 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS---------SCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEEEC---------CCCCccEEEEeeCCCEEEEEECCCCCc
Confidence            22467899999976577777777889999998754322 22110         11246889999974555554433  46


Q ss_pred             eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcc
Q 012712          227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVS  304 (458)
Q Consensus       227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~  304 (458)
                      .|..+++.....               ..+..........++++|++..|..+.  .+.|..++....            
T Consensus       147 ~I~~~~~dg~~~---------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~------------  199 (267)
T 1npe_A          147 KIETSHMDGTNR---------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP------------  199 (267)
T ss_dssp             EEEEEETTSCCC---------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE------------
T ss_pred             EEEEEecCCCCc---------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC------------
Confidence            888888754221               011111224578899999876555444  447999987641            


Q ss_pred             ccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC
Q 012712          305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD  384 (458)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (458)
                                                .....+.+...   ...++. . ++..+++...++.|.++|..+++.+.++...
T Consensus       200 --------------------------~~~~~~~~~~~---P~gi~~-d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g  248 (267)
T 1npe_A          200 --------------------------GRRKVLEGLQY---PFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH  248 (267)
T ss_dssp             --------------------------EEEEEEECCCS---EEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred             --------------------------ceEEEecCCCC---ceEEEE-e-CCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence                                      11111111112   245555 4 3444445455689999999999999888644


Q ss_pred             C-ceeeEEEecCCCC
Q 012712          385 R-HVVNCIEPHPHST  398 (458)
Q Consensus       385 ~-~~v~~~~~s~~~~  398 (458)
                      . .....+++.|++.
T Consensus       249 ~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          249 KQTRLYGITIALSQC  263 (267)
T ss_dssp             SCCCCCCEEEECSCC
T ss_pred             cccccceeeecCccC
Confidence            3 2477888888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.31  E-value=1.7e-09  Score=97.50  Aligned_cols=257  Identities=9%  Similarity=-0.012  Sum_probs=148.5

Q ss_pred             CCeEEEEEcC-CCcEEEeecccccceeeeeccccccceEEEEE-c-CCCCeEEEEe-----------------cCCCeEE
Q 012712          117 DDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKLAI-E-PGSPHVFYTC-----------------GEDGLVQ  176 (458)
Q Consensus       117 ~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~s~-----------------~~dg~i~  176 (458)
                      ||++++.... +..|.+.|+.+.+......+.. ......+++ . |++..+++++                 -.++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            6777766554 5679999999887665433332 234678887 4 8885544442                 3356899


Q ss_pred             EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC---------------eEEEEecCCCccC--
Q 012712          177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE---------------YTRLYDIRKYKWD--  239 (458)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------------~i~i~d~~~~~~~--  239 (458)
                      ++|.++.+....+...           .....++++|+ +.++++.+.+.               .|.++|....+..  
T Consensus       179 vID~~t~~v~~qI~Vg-----------g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS-----------GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             EEETTTTEEEEEEEES-----------SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             EEECCCCeEEEEEEeC-----------CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence            9999988777666532           13456778998 56666666442               2444443221100  


Q ss_pred             -CCcc-CCC-----CCC-CcCC-CccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCC--CCCCCCCcccc
Q 012712          240 -GSTD-FGQ-----PAD-YFCP-PNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGP--NPPPSSPVSTR  306 (458)
Q Consensus       240 -~~~~-~~~-----~~~-~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~--~~~~~~~~~~~  306 (458)
                       +... .+.     ... .... ..... -.....++.++|||+++++++  .+.+.++|+.+.+..  ..+.       
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~-------  318 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD-------  318 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC-------
T ss_pred             CCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC-------
Confidence             0000 000     000 0000 00010 123567899999999888877  458999999852100  0000       


Q ss_pred             ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC----------Ce
Q 012712          307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG----------GE  376 (458)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~  376 (458)
                                           ...........-..   ...++| +|+|....+.-.|++|.+||+.+          .+
T Consensus       319 ---------------------~~~~v~~~v~vG~g---P~h~aF-~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~  373 (595)
T 1fwx_A          319 ---------------------PRSAVVAEPELGLG---PLHTAF-DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP  373 (595)
T ss_dssp             ---------------------GGGGEEECCBCCSC---EEEEEE-CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred             ---------------------cccceEEEcCCCCC---cceEEE-CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence                                 00011112221122   577888 99995445667789999999987          56


Q ss_pred             EEEEeecCCce-----eeEEEecCCCCeEEEeec---CCcE----------EEecCCcccc
Q 012712          377 LIRVIEADRHV-----VNCIEPHPHSTVLASSGI---ESDI----------KILTPNAADR  419 (458)
Q Consensus       377 ~~~~~~~~~~~-----v~~~~~s~~~~~l~s~~~---d~~i----------~iw~~~~~~~  419 (458)
                      .+..+..|-.+     -..+.++|||++|+++..   |..+          .++|++++++
T Consensus       374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence            77777666443     234467899999998743   4332          7888866554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.30  E-value=9.7e-10  Score=104.30  Aligned_cols=305  Identities=10%  Similarity=0.036  Sum_probs=173.1

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCc----------ceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHND----------NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      +..|+.++.++.|.-+|..+|+.+.++......          .-..+++    ++..|+.++.|+.|..+|..+++.+.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            456667777889999999999988776322110          0112333    44578888889999999999998876


Q ss_pred             eeecc-ccc--cceEE-EEEcCCCCeEEEEecC------CCeEEEEeCCCCCccceeeecccCC---------------C
Q 012712          143 TKLLG-KHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTCRPIDD---------------R  197 (458)
Q Consensus       143 ~~~~~-~~~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------~  197 (458)
                      ..... ...  ..+.. ... .++ . ++.++.      ++.|+.+|.++++.+..+.......               .
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v-~~~-~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRV-FKG-K-VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEE-ETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             eecCCcCcCcCcccccCcEE-ECC-E-EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            64332 100  11111 111 133 4 444443      6899999999999887665432210               0


Q ss_pred             C--cc-----eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc-ceeEEEe
Q 012712          198 R--NY-----MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAF  269 (458)
Q Consensus       198 ~--~~-----~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~  269 (458)
                      .  +.     ........++++|+ ..+++.+..++..  |.......                  ..+... .-.-+++
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~--w~~~~~~~------------------~~gd~~~~~sv~Al  288 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSP--WSHKVRSP------------------KGGDNLYLASIVAL  288 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEES--SCHHHHST------------------TCCCCTTTTEEEEE
T ss_pred             cccCceeEeCCCcccccceeEcCC-CCEEEEECCCCcc--ccCCCCCc------------------cCCCCeeeEEEEEE
Confidence            0  00     01111235778887 4677777766543  43221100                  000000 0001111


Q ss_pred             CCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEE
Q 012712          270 SDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN  349 (458)
Q Consensus       270 ~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  349 (458)
                      ++         +..-.+|........                                     .-.+.....+ .+.  .
T Consensus       289 D~---------~TG~~~W~~~~~~~d-------------------------------------~wd~~~~~~p-~l~--~  319 (677)
T 1kb0_A          289 DP---------DTGKYKWHYQETPGD-------------------------------------NWDYTSTQPM-ILA--D  319 (677)
T ss_dssp             CT---------TTCCEEEEEESSTTC-------------------------------------CSCCCCCSCC-EEE--E
T ss_pred             EC---------CCCCEEEEEecCCCc-------------------------------------ccccccCCCc-EEE--e
Confidence            11         111123332221000                                     0000000111 111  2


Q ss_pred             EecCCC---cEEEEecCCCeEEEEEecCCeEEEEeecCC-----------cee------------------------eEE
Q 012712          350 FFGPKC---EYVVSGSDCGRIFIWKKKGGELIRVIEADR-----------HVV------------------------NCI  391 (458)
Q Consensus       350 ~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~v------------------------~~~  391 (458)
                      . ..+|   +.++.++.+|.++++|..+|+++..+....           .++                        ..+
T Consensus       320 ~-~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~  398 (677)
T 1kb0_A          320 I-KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM  398 (677)
T ss_dssp             E-EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred             c-ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence            2 3477   688999999999999999999987664221           111                        156


Q ss_pred             EecCCCCeEEEeec-------------------------------------------CCcEEEecCCccccccccccccc
Q 012712          392 EPHPHSTVLASSGI-------------------------------------------ESDIKILTPNAADRATLPTNIEQ  428 (458)
Q Consensus       392 ~~s~~~~~l~s~~~-------------------------------------------d~~i~iw~~~~~~~~~~~~~~~~  428 (458)
                      +++|++.++++...                                           .|.|..||+.+++.+-...+..+
T Consensus       399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~  478 (677)
T 1kb0_A          399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP  478 (677)
T ss_dssp             EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS
T ss_pred             eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC
Confidence            88999888776543                                           27899999999887644444445


Q ss_pred             EEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          429 VCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       429 v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      +....++.++.+++.++.|+.+++||.
T Consensus       479 ~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          479 WNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             CcCcceEeCCCEEEEECCCCcEEEEEC
Confidence            566678888888888999999999984

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.28  E-value=2.1e-09  Score=101.91  Aligned_cols=209  Identities=14%  Similarity=0.095  Sum_probs=121.6

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-Cce-EEEEEecCCCEEEEecCCCeEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCV-NTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      +..|+.++.++.|.-+|..+|+.+-+.........            ...+. ..+ ..+++  .+..++.++.|+.|..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~a  131 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVK------------ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIA  131 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGG------------GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccc------------cccccccCCccceEE--ECCEEEEEcCCCEEEE
Confidence            55677788889999999999998755110000000            00000 000 11222  2457788888999999


Q ss_pred             EECCCcceeeeeccCCC---cceeE-EEEccCCCCeEEEEEcC------CCcEEEeecccccceeeeecccc--------
Q 012712           88 WDWKTERVKLSFHSGHN---DNVFQ-AKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKH--------  149 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~~---~~i~~-~~~~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~~~~~~--------  149 (458)
                      +|.++|+.+.++.....   ..+.+ ....   ++. ++.+..      +|.|..+|..+++.+........        
T Consensus       132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~  207 (668)
T 1kv9_A          132 LDAKTGKAIWSQQTTDPAKPYSITGAPRVV---KGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEH  207 (668)
T ss_dssp             EETTTCCEEEEEECSCTTSSCBCCSCCEEE---TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred             EECCCCCEeeeeccCCCCCcceecCCCEEE---CCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccc
Confidence            99999998877633211   11111 1111   444 444432      58899999999887765332110        


Q ss_pred             ---------------------ccceEEEEEcCCCCeEEEEecCCC-------------------eEEEEeCCCCCcccee
Q 012712          150 ---------------------QGRAHKLAIEPGSPHVFYTCGEDG-------------------LVQHFDLRTGAATELF  189 (458)
Q Consensus       150 ---------------------~~~v~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~  189 (458)
                                           ......+++.|.. .+++.++.++                   .|..+|.++++.+..+
T Consensus       208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~  286 (668)
T 1kv9_A          208 PELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY  286 (668)
T ss_dssp             HHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             cccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe
Confidence                                 0111246788877 4667776665                   4999999999988777


Q ss_pred             eecccCCCCcceeecceEEEEECCCCCc---EEEEecCCCeEEEEecCCCccC
Q 012712          190 TCRPIDDRRNYMTVVNLNAIAIDPRNAN---LFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      +....... ......++....+..+ +.   .++.++.+|.++++|..+++.+
T Consensus       287 ~~~~~~~w-d~~~~~~~~~~d~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          287 QVTPGDSW-DFTATQQITLAELNID-GKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             ESSTTCCS-CCCCCSCEEEEEEEET-TEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             ecCCCccc-cccCCCCcEEEEeccC-CcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            64321100 0001112222222223 33   6889999999999999998754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=4.6e-09  Score=91.41  Aligned_cols=251  Identities=12%  Similarity=0.061  Sum_probs=145.0

Q ss_pred             CCCCeEEE-eeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee------cC-CCceEEEEEecCCCEEEEe
Q 012712            8 NNNKRART-SVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD------KH-RGCVNTVSFNTDGDILISG   79 (458)
Q Consensus         8 ~~~~~l~~-~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h-~~~v~~~~~s~~~~~l~s~   79 (458)
                      .++++|+. |..++.|.|.|+.+....                 .++.++++      .. ...-..+..+|+| +++++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-----------------p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~  154 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE-----------------PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISA  154 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS-----------------CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC-----------------ceeeeeechhhcccccCCCcccceeECCCe-EEEEc
Confidence            66766555 668889999999754211                 12222331      01 1133457788999 66665


Q ss_pred             cCC------CeEEEEECCCcceeeeeccC-CC-cceeEEEEccCCCCeEEEEEc-------------------CCCcEEE
Q 012712           80 SDD------RRVILWDWKTERVKLSFHSG-HN-DNVFQAKIMPFTDDRSIVTCA-------------------ADGQVRH  132 (458)
Q Consensus        80 ~~d------~~i~iwd~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~l~s~~-------------------~dg~i~v  132 (458)
                      ..+      +.|.+.|.++++.+.++..+ .. .--+.+.|+|  +++.+++..                   ...+|.+
T Consensus       155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v  232 (462)
T 2ece_A          155 LGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF  232 (462)
T ss_dssp             EEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred             CCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC--CCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence            544      78999999999988887433 11 2245688899  999888884                   3689999


Q ss_pred             eecccccceeeeeccccccceEEEEE--cCCCCeEEEEec-----CCCeEEEEeCCCCCcc--ceeeeccc--CC-CC--
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAI--EPGSPHVFYTCG-----EDGLVQHFDLRTGAAT--ELFTCRPI--DD-RR--  198 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~--~~~~~~~~--~~-~~--  198 (458)
                      ||+.+++...+..+.........+.|  +|+++..++++.     .+++|.+|....++..  +.+.....  .. ..  
T Consensus       233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~  312 (462)
T 2ece_A          233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI  312 (462)
T ss_dssp             EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred             EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence            99988766555444322233445555  999966555565     6778888776544321  11111110  00 00  


Q ss_pred             --ccee-ecceEEEEECCCCCcEEEEecCCCeEEEEecCCC---ccCCCccCCCCCCCcCCCccc-cccccceeEEEeCC
Q 012712          199 --NYMT-VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY---KWDGSTDFGQPADYFCPPNLI-GDEQVGITGLAFSD  271 (458)
Q Consensus       199 --~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~  271 (458)
                        +... ...+..+.++||+..+.++.-..+.|.+||+...   ++......+.....  +.... ..-.+....++++|
T Consensus       313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~--~~~~~G~~~~ggPr~~~lSp  390 (462)
T 2ece_A          313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR--ADHPAGHKLTGAPQMLEISR  390 (462)
T ss_dssp             GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC--BCCTTSCCCCSCCCCEEECT
T ss_pred             ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc--ccccccccCCCCCCEEEEcC
Confidence              0000 1346789999995444444556789999998633   22221111100000  00000 00012367899999


Q ss_pred             CCcEEEEec
Q 012712          272 QSELLVSYN  280 (458)
Q Consensus       272 ~~~~l~~~~  280 (458)
                      ||++|.++.
T Consensus       391 DGk~LyVaN  399 (462)
T 2ece_A          391 DGRRVYVTN  399 (462)
T ss_dssp             TSSEEEEEC
T ss_pred             CCCEEEEEc
Confidence            999887765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=3.6e-07  Score=89.07  Aligned_cols=327  Identities=9%  Similarity=0.039  Sum_probs=190.5

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeecc------CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS------GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      ..|.++...++|.+.+. +.+ -+.+||..+++.......      .....|.++...+  ++.+. .|...+-|.+++.
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lW-igt~~~Gl~~~~~  285 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK--DNKLW-IATELNGIMILDL  285 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT--TSEEE-EEESSSCEEEEET
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC--CCCEE-EEeCCCCeEEECC
Confidence            56999999888876654 444 589999876654321100      1235688998887  77644 4555456788887


Q ss_pred             ccccceeeee------------ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712          136 LERGGVETKL------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       136 ~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      .+........            ..-....|.++...+++ . |..|+.++-|..++........ +..............
T Consensus       286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSN  362 (781)
T ss_dssp             TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSS
T ss_pred             CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCC
Confidence            6554221110            01134578999999888 3 5667767778899877654322 211000000000023


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF  283 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  283 (458)
                      ..|.++...++ + .|..|+.++-|..||..+.+.....            .........|.++...++|.+.+....+.
T Consensus       363 ~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~------------~~~~~~~~~v~~i~~d~~g~lWigt~~~G  428 (781)
T 3v9f_A          363 KVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAIYNK------------ENRELLSNSVLCSLKDSEGNLWFGTYLGN  428 (781)
T ss_dssp             SCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETTEE
T ss_pred             cceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEEEcc------------CCCCCCCcceEEEEECCCCCEEEEeccCC
Confidence            35889988876 3 4566776667999998765422110            00011245789999988898777555568


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC-ccceeeeeEEEEecCCCcEEEEec
Q 012712          284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      +..++..++..                                       ..+.. ......|.++.. +++|++.+. +
T Consensus       429 l~~~~~~~~~~---------------------------------------~~~~~~~~~~~~v~~i~~-d~~g~lwig-t  467 (781)
T 3v9f_A          429 ISYYNTRLKKF---------------------------------------QIIELEKNELLDVRVFYE-DKNKKIWIG-T  467 (781)
T ss_dssp             EEEECSSSCEE---------------------------------------EECCSTTTCCCCEEEEEE-CTTSEEEEE-E
T ss_pred             EEEEcCCCCcE---------------------------------------EEeccCCCCCCeEEEEEE-CCCCCEEEE-E
Confidence            99998765311                                       11110 001113778877 888875554 4


Q ss_pred             CCCeEEEEEecCCeEEEEeecC-----CceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc----ccccEEEEE
Q 012712          363 DCGRIFIWKKKGGELIRVIEAD-----RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT----NIEQVCFSI  433 (458)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~v~~~~  433 (458)
                      . +-|..||..+++........     ...|.++...++|.+.+. +.++-|..|+..+++...+..    ....|.++.
T Consensus       468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~  545 (781)
T 3v9f_A          468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIY  545 (781)
T ss_dssp             T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEE
T ss_pred             C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEE
Confidence            4 56889998776544332222     356899999998886654 443457778887665443321    133588999


Q ss_pred             EecCCcEEEeeecCCceEEEE
Q 012712          434 YSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       434 ~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ..++|.+.++ +.+|-|..|+
T Consensus       546 ~d~~g~lWi~-T~~Glv~~~d  565 (781)
T 3v9f_A          546 RSSKGQMWLA-TGEGLVCFPS  565 (781)
T ss_dssp             ECTTSCEEEE-ETTEEEEESC
T ss_pred             ECCCCCEEEE-ECCCceEEEC
Confidence            9999864433 2344434443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.24  E-value=3.2e-08  Score=82.79  Aligned_cols=251  Identities=10%  Similarity=0.045  Sum_probs=147.8

Q ss_pred             eEEEEEcCCCcEEEeeccccccee---eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712          119 RSIVTCAADGQVRHAQILERGGVE---TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID  195 (458)
Q Consensus       119 ~~l~s~~~dg~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  195 (458)
                      .+|+.+.. +.|+.+++.......   ...+......+..+++++++..++++-..++.|..+++.......... .   
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~---   76 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-Q---   76 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-T---
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-C---
Confidence            44555553 478888876543210   011222234578899999765777777778899999987654322221 0   


Q ss_pred             CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-
Q 012712          196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-  274 (458)
Q Consensus       196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  274 (458)
                            .......++++|+++.++++-...+.|.++++.....               ..+..........++++|++. 
T Consensus        77 ------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---------------~~~~~~~~~~P~~i~vd~~~g~  135 (267)
T 1npe_A           77 ------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---------------RVLFDTGLVNPRGIVTDPVRGN  135 (267)
T ss_dssp             ------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSSEEEEEEETTTTE
T ss_pred             ------CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---------------EEEEECCCCCccEEEEeeCCCE
Confidence                  1124688999997566666666778999999864321               011111123568899999654 


Q ss_pred             EEEEecC---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEE
Q 012712          275 LLVSYND---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNF  350 (458)
Q Consensus       275 ~l~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~  350 (458)
                      ++++...   +.|..++++...                                       ...+. ....  ....+++
T Consensus       136 lyv~~~~~~~~~I~~~~~dg~~---------------------------------------~~~~~~~~~~--~P~gia~  174 (267)
T 1npe_A          136 LYWTDWNRDNPKIETSHMDGTN---------------------------------------RRILAQDNLG--LPNGLTF  174 (267)
T ss_dssp             EEEEECCSSSCEEEEEETTSCC---------------------------------------CEEEECTTCS--CEEEEEE
T ss_pred             EEEEECCCCCcEEEEEecCCCC---------------------------------------cEEEEECCCC--CCcEEEE
Confidence            4444432   367777765311                                       11111 1111  2567888


Q ss_pred             ecCCCcEEEE-ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc-cccc-cc
Q 012712          351 FGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT-LPTN-IE  427 (458)
Q Consensus       351 ~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~-~~  427 (458)
                       +++++.|+. -...+.|.+++.........+.. ......++.. .+.++++....+.|..++..+++... +... ..
T Consensus       175 -d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~  251 (267)
T 1npe_A          175 -DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT  251 (267)
T ss_dssp             -ETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC
T ss_pred             -cCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccc
Confidence             998766654 44568999999865443333332 2334566664 34444444456899999998876543 3222 22


Q ss_pred             cEEEEEEecCCc
Q 012712          428 QVCFSIYSADYW  439 (458)
Q Consensus       428 ~v~~~~~s~d~~  439 (458)
                      ....+++.|++.
T Consensus       252 ~p~gi~~~~~~~  263 (267)
T 1npe_A          252 RLYGITIALSQC  263 (267)
T ss_dssp             CCCCEEEECSCC
T ss_pred             ccceeeecCccC
Confidence            467788888864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.22  E-value=5.5e-07  Score=87.74  Aligned_cols=322  Identities=8%  Similarity=-0.000  Sum_probs=189.1

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec-------------cCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-------------SGHNDNVFQAKIMPFTDDRSIVTCAAD  127 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~l~s~~~d  127 (458)
                      ...|.++...++|.+.+ |+..+-|.++|..++.......             .-....|.++...+  ++. |..|..+
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~-lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN-IWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC-EEEEEBS
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC-EEEEecC
Confidence            45799999988886544 5553458889987655322110             11345788998887  665 5566666


Q ss_pred             CcEEEeecccccceeeee-------ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc
Q 012712          128 GQVRHAQILERGGVETKL-------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY  200 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  200 (458)
                      +-|..++...........       ..-....|.++...+++ . |..|+.++-|..+|..++..... ...  ..    
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~-~~~--~~----  403 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGINVFENGKRVAIYN-KEN--RE----  403 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEEEEETTEEEEECC------------
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEEEEECCCCeEEEc-cCC--CC----
Confidence            778888876543221100       01123568999988887 4 55666666688898765432211 100  00    


Q ss_pred             eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712          201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      .....|.++...++ + .|..|+.++.+..+|..+++....          ...   ......|.++...++|.+.+...
T Consensus       404 ~~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~----------~~~---~~~~~~v~~i~~d~~g~lwigt~  468 (781)
T 3v9f_A          404 LLSNSVLCSLKDSE-G-NLWFGTYLGNISYYNTRLKKFQII----------ELE---KNELLDVRVFYEDKNKKIWIGTH  468 (781)
T ss_dssp             CCCSBEEEEEECTT-S-CEEEEETTEEEEEECSSSCEEEEC----------CST---TTCCCCEEEEEECTTSEEEEEET
T ss_pred             CCCcceEEEEECCC-C-CEEEEeccCCEEEEcCCCCcEEEe----------ccC---CCCCCeEEEEEECCCCCEEEEEC
Confidence            02346889988876 3 455577767799999876543211          000   11245788999999998776655


Q ss_pred             CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecCCCcEEE
Q 012712          281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVV  359 (458)
Q Consensus       281 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~l~  359 (458)
                       +.+..|+..++.....                                    .... .......|.++.. +++|++.+
T Consensus       469 -~Gl~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~i~~i~~-d~~g~lWi  510 (781)
T 3v9f_A          469 -AGVFVIDLASKKVIHH------------------------------------YDTSNSQLLENFVRSIAQ-DSEGRFWI  510 (781)
T ss_dssp             -TEEEEEESSSSSCCEE------------------------------------ECTTTSSCSCSCEEEEEE-CTTCCEEE
T ss_pred             -CceEEEeCCCCeEEec------------------------------------ccCcccccccceeEEEEE-cCCCCEEE
Confidence             7799999765321100                                    0000 0000123778887 88887665


Q ss_pred             EecCCCeEEEEEecCCeEEEEeec----CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc----cccEEE
Q 012712          360 SGSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN----IEQVCF  431 (458)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~----~~~v~~  431 (458)
                      . +.++-+..||..+++. ..+..    ....|.++...++|.+.++.. +|.+..|+..+++...+...    ...|.+
T Consensus       511 g-t~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~  587 (781)
T 3v9f_A          511 G-TFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRA  587 (781)
T ss_dssp             E-ESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCE
T ss_pred             E-EcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEE
Confidence            4 4433477788766543 33321    234688999989988766544 66658999887755433222    124778


Q ss_pred             EEEecCCcEEEeeecCCceEEE
Q 012712          432 SIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       432 ~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      +...++|.+-++ +.+| |..|
T Consensus       588 i~~d~~g~lW~~-t~~G-l~~~  607 (781)
T 3v9f_A          588 ISEDKNGNIWAS-TNTG-ISCY  607 (781)
T ss_dssp             EEECSSSCEEEE-CSSC-EEEE
T ss_pred             EEECCCCCEEEE-cCCc-eEEE
Confidence            888888865544 2444 4444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=1.1e-08  Score=83.50  Aligned_cols=204  Identities=10%  Similarity=0.052  Sum_probs=136.1

Q ss_pred             CCCCCCCCeEEEeeC--CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEec
Q 012712            4 ASNNNNNKRARTSVD--KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGS   80 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~--d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~   80 (458)
                      +.+++++.+.++.+.  ++.|++.|+.+|+.+.+.                   .+..+. ....+++.  ++.| ++.-
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i-------------------~l~~~~-fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH-------------------KMDDSY-FGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE-------------------ECCTTC-CEEEEEEE--TTEEEEEET
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE-------------------ecCCCc-ceEEEEEe--CCEEEEEEe
Confidence            346777644444432  689999999999987541                   112221 12245554  4444 4445


Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc---ceEEEE
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLA  157 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~  157 (458)
                      .++.+.++|..+.+.+.++..+ ...  ....++  |++.++.+..++.|.++|..+.+............   .++.+.
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele  158 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE  158 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC-SSS--CCEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             cCCEEEEEECCCCcEEEEEECC-CCC--eEEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence            6789999999999988887443 122  233556  88877777778999999998877665543432222   356788


Q ss_pred             EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC---CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712          158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR  234 (458)
Q Consensus       158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  234 (458)
                      |. ++ .+++....++.|.+.|..+++....+.......   ..........+.++|+|++..+++++...+.+...++.
T Consensus       159 ~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          159 YI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            87 66 666666678899999999999888876532100   00000112468999999877788888888999999987


Q ss_pred             CC
Q 012712          235 KY  236 (458)
Q Consensus       235 ~~  236 (458)
                      ..
T Consensus       237 ~~  238 (266)
T 2iwa_A          237 LV  238 (266)
T ss_dssp             EC
T ss_pred             cc
Confidence            64

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.18  E-value=7.3e-10  Score=99.89  Aligned_cols=208  Identities=11%  Similarity=0.074  Sum_probs=136.2

Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE-C-CCCCcEEEEec---------------
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI-D-PRNANLFAVAG---------------  223 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-p~~~~~l~~~~---------------  223 (458)
                      ||+.++++...+..|.+.|+.+.++.+.+..+.         ...+..+++ + |+ +.++++++               
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~---------g~~phg~~~~~~p~-~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---------AKGIHGLRPQKWPR-SNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---------CCSEEEEEECCSSB-CSEEEEEECSCEESSCSSSSTTC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC---------CCCCcceeeeecCC-CcEEEEecccccccCCCCccccc
Confidence            776666666677889999999999877664321         224667787 4 87 56666663               


Q ss_pred             ---CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc----------------E
Q 012712          224 ---SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF----------------I  284 (458)
Q Consensus       224 ---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~----------------i  284 (458)
                         .++.+.+.|..+.+...+...                .+....++++|+|+++.+.+.++                +
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~V----------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v  233 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLV----------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  233 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEE----------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             ccccCceEEEEECCCCeEEEEEEe----------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence               345788999987664322111                11345678999999888776432                2


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC  364 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d  364 (458)
                      .++|...                                                     +.  .+ .++|++...    
T Consensus       234 ~V~~~~~-----------------------------------------------------~~--~~-v~~Gk~~~i----  253 (595)
T 1fwx_A          234 VVFNIAE-----------------------------------------------------IE--KA-IAAGDYQEL----  253 (595)
T ss_dssp             EEEEHHH-----------------------------------------------------HH--HH-HHHTCSEEE----
T ss_pred             EEeeccc-----------------------------------------------------ee--Ee-ccCCCeeEE----
Confidence            2222111                                                     00  11 455655443    


Q ss_pred             CeEEEEEecC--CeE-EEEeecCCceeeEEEecCCCCeEEEee-cCCcEEEecCCccc------------cccccccccc
Q 012712          365 GRIFIWKKKG--GEL-IRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPNAAD------------RATLPTNIEQ  428 (458)
Q Consensus       365 g~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~------------~~~~~~~~~~  428 (458)
                      +.|.+.|..+  ++. ++.+... ....++.++|||+++++++ .+.+|.++|+.+.+            ......-...
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g  332 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  332 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred             CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence            4499999988  555 5566432 3467899999999776554 58899999999653            1122233345


Q ss_pred             EEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          429 VCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       429 v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ...++|+|||....+.-.|++|.+|++
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEh
Confidence            889999999944456778899999985

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.15  E-value=8e-09  Score=95.89  Aligned_cols=367  Identities=10%  Similarity=-0.009  Sum_probs=189.1

Q ss_pred             CCeEEEeeC-CCcEEEEEc-cccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712           10 NKRARTSVD-KALVDVWLR-ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL   87 (458)
Q Consensus        10 ~~~l~~~~~-d~~i~iw~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i   87 (458)
                      +.+|+.++. ++.|.-+|. .+|+.+-+.........         ......+ ..-..+++  ++..++.++.|+.+..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~---------~~~~~~~-~~~~~~~~--~~~~v~v~~~dg~l~a  129 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST---------KAVMCCD-VVDRGLAY--GAGQIVKKQANGHLLA  129 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG---------GGGCTTC-SCCCCCEE--ETTEEEEECTTSEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc---------ccccccc-ccccccEE--ECCEEEEEeCCCEEEE
Confidence            445667777 788999999 88987754110000000         0000000 00011222  2557778888999999


Q ss_pred             EECCCcceeeeeccCC-C--cceeE-EEEccCCCCeEEEEEcC------CCcEEEeecccccceeeeecccccc------
Q 012712           88 WDWKTERVKLSFHSGH-N--DNVFQ-AKIMPFTDDRSIVTCAA------DGQVRHAQILERGGVETKLLGKHQG------  151 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~-~--~~i~~-~~~~~~~~~~~l~s~~~------dg~i~vw~~~~~~~~~~~~~~~~~~------  151 (458)
                      +|..+|+.+.+..... .  ..+.+ ....   ++. ++.++.      ++.|..+|..+++.+..........      
T Consensus       130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~---~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p  205 (571)
T 2ad6_A          130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVA---KDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAK  205 (571)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred             EECCCCCEEEEecCCCCCccceeccCCEEE---CCE-EEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCc
Confidence            9999999877653211 1  01211 1111   444 444443      7899999999988765533221110      


Q ss_pred             ------------------------------ceEEEEEcCCCCeEEEEecCC----------------CeEEEEeCCCCCc
Q 012712          152 ------------------------------RAHKLAIEPGSPHVFYTCGED----------------GLVQHFDLRTGAA  185 (458)
Q Consensus       152 ------------------------------~v~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~  185 (458)
                                                    .-..+++.+... +++.+..+                +.|..+|.++++.
T Consensus       206 ~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~  284 (571)
T 2ad6_A          206 DFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA  284 (571)
T ss_dssp             TTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred             ccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE
Confidence                                          001356666653 44444421                3699999999998


Q ss_pred             cceeeecccCCCCcceeecceEEEEECCCCC---cEEEEecCCCeEEEEecCCCccCCCccCCCCCC--------CcCCC
Q 012712          186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD--------YFCPP  254 (458)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~~~~~  254 (458)
                      +..++..............++ -+...++ +   ..++.++.+|.++++|..+++......+.....        .-.+.
T Consensus       285 ~W~~~~~~~d~~d~~~~~~p~-l~~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~  362 (571)
T 2ad6_A          285 KWGYQKTPHDEWDFAGVNQMV-LTDQPVN-GKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPV  362 (571)
T ss_dssp             EEEEESSTTCSSCCCCCCCCE-EEEEEET-TEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEE
T ss_pred             EEEecCCCCcccccccCCCCE-EEecccC-CcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCcee
Confidence            776654321100000011112 1222234 4   367788899999999999987654433322100        00000


Q ss_pred             c--------------ccccc--ccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712          255 N--------------LIGDE--QVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT  317 (458)
Q Consensus       255 ~--------------~~~~~--~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (458)
                      .              .....  ...-..++++|+..++.....+ ...++.....     +                   
T Consensus       363 ~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~-----~-------------------  418 (571)
T 2ad6_A          363 RDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP-----Y-------------------  418 (571)
T ss_dssp             ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-----C-------------------
T ss_pred             cccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc-----c-------------------
Confidence            0              00000  0001356788887777766654 3333332210     0                   


Q ss_pred             cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712          318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS  397 (458)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (458)
                                   ..-..+.+.     -..+.. +|.+.   ....+|.|..||+.+++.+-++... ..+....+...+
T Consensus       419 -------------~~g~~~~g~-----~~~~~~-~~~~~---~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~g  475 (571)
T 2ad6_A          419 -------------RAGQFFVGA-----TLAMYP-GPNGP---TKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKG  475 (571)
T ss_dssp             -------------CTTSCCCCE-----EEEEEE-CTTST---TSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETT
T ss_pred             -------------ccCCccccc-----cceecc-Ccccc---CCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECC
Confidence                         000000000     111222 44322   0134688999999999988776533 223333333346


Q ss_pred             CeEEEeecCCcEEEecCCccccccccccccc--EEEEEEecCCcEEE
Q 012712          398 TVLASSGIESDIKILTPNAADRATLPTNIEQ--VCFSIYSADYWWSK  442 (458)
Q Consensus       398 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~  442 (458)
                      ..++.++.|+.|+.+|..+++.+-.......  -..+.+..+|+.++
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence            6777789999999999999977632221122  12244668885443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.13  E-value=1.2e-07  Score=87.95  Aligned_cols=213  Identities=10%  Similarity=0.041  Sum_probs=118.8

Q ss_pred             CCeEEEeeC-CCcEEEEEc-cccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCE----EEEecCCC
Q 012712           10 NKRARTSVD-KALVDVWLR-ELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI----LISGSDDR   83 (458)
Q Consensus        10 ~~~l~~~~~-d~~i~iw~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~~d~   83 (458)
                      +.+|++++. ++.|.-+|. .+|+.+-+...........          ..........++++|.+..    |+.++.|+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~----------~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg  131 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARA----------VACCDLVNRGLAYWPGDGKTPALILKTQLDG  131 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG----------GCSSCSCCCCCEEECCCSSSCCEEEEECTTS
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccc----------cccccccccceEEEecCCcceeEEEEEcCCC
Confidence            456777777 888999999 8898875411100000000          0000000122455444444    77888899


Q ss_pred             eEEEEECCCcceeeeeccCC-C--cceeE-EEEccCCCCeEEEEEc------CCCcEEEeecccccceeeeecccccc--
Q 012712           84 RVILWDWKTERVKLSFHSGH-N--DNVFQ-AKIMPFTDDRSIVTCA------ADGQVRHAQILERGGVETKLLGKHQG--  151 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~-~--~~i~~-~~~~~~~~~~~l~s~~------~dg~i~vw~~~~~~~~~~~~~~~~~~--  151 (458)
                      .|.-+|.++|+.+.+..... .  ..+.+ ....   ++. ++.++      .+|.|..+|..+++.+..........  
T Consensus       132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~---~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~  207 (599)
T 1w6s_A          132 NVAALNAETGETVWKVENSDIKVGSTLTIAPYVV---KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL  207 (599)
T ss_dssp             EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred             EEEEEECCCCCEEEeecCCCCCccceeecCCEEE---CCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence            99999999999877653211 0  01221 1111   454 44443      37899999999988765533221110  


Q ss_pred             ---------------------------------ce-EEEEEcCCCCeEEEEecCC----------------CeEEEEeCC
Q 012712          152 ---------------------------------RA-HKLAIEPGSPHVFYTCGED----------------GLVQHFDLR  181 (458)
Q Consensus       152 ---------------------------------~v-~~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~  181 (458)
                                                       .+ ..+++.+.. .+++.+..+                +.|..+|.+
T Consensus       208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~  286 (599)
T 1w6s_A          208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD  286 (599)
T ss_dssp             TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred             ccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence                                             00 134556666 355555543                479999999


Q ss_pred             CCCccceeeecccCCCCcceeecceEEEEEC-CCCC---cEEEEecCCCeEEEEecCCCccC
Q 012712          182 TGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA---NLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~---~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      +++....++..............++ -+... .+ +   ..++.++.+|.++++|.++++.+
T Consensus       287 TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~-G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          287 TGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKD-GKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             TCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTT-SCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCceeeEeecCCCccccccCCCccE-EEeccccC-CcEEEEEEEECCCcEEEEEECCCCCEe
Confidence            9998877664321110000011111 12222 33 4   56777899999999999988754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=7.7e-08  Score=77.53  Aligned_cols=213  Identities=11%  Similarity=0.042  Sum_probs=134.9

Q ss_pred             eEEeeeeeEeecCCC--ceEEEEEecCCCEEEEecCCC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCC-eEEE
Q 012712           48 VLRLGIYAKLDKHRG--CVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIV  122 (458)
Q Consensus        48 ~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~  122 (458)
                      ...+++++++. |..  ....+.|+ ++.++.+.+.+|  .|+++|+++++.+.++..  ..........+  ++ ...+
T Consensus        28 ~~~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~--~g~~ly~  101 (262)
T 3nol_A           28 IYDYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISD--WKDKIVG  101 (262)
T ss_dssp             EEEEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEE--ETTEEEE
T ss_pred             ccceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEE--eCCEEEE
Confidence            34567777774 553  35889998 677777777665  899999999998887732  23343333333  33 4444


Q ss_pred             EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712          123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT  202 (458)
Q Consensus       123 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  202 (458)
                      ..-.++.+.++|..+.+.+........     ...+.+++..+ +.+..++.|.++|.++.+....+.......     .
T Consensus       102 ltw~~~~v~v~D~~t~~~~~ti~~~~e-----G~glt~dg~~L-~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~-----~  170 (262)
T 3nol_A          102 LTWKNGLGFVWNIRNLRQVRSFNYDGE-----GWGLTHNDQYL-IMSDGTPVLRFLDPESLTPVRTITVTAHGE-----E  170 (262)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEECSSC-----CCCEEECSSCE-EECCSSSEEEEECTTTCSEEEEEECEETTE-----E
T ss_pred             EEeeCCEEEEEECccCcEEEEEECCCC-----ceEEecCCCEE-EEECCCCeEEEEcCCCCeEEEEEEeccCCc-----c
Confidence            445688999999999888776444331     12333566444 444447889999999998877766432100     1


Q ss_pred             ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                      ...++.+.|. + +.+.+..-.+..|.+.|.++++......+........   .......-.+.|||+|+++.|...+..
T Consensus       171 ~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~---~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          171 LPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG---PLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             CCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC---SCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             ccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc---cccCcCCceEEEEEcCCCCEEEEECCC
Confidence            1234557776 3 5666666678899999999998776655432110000   001123456899999987766665544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.09  E-value=8.7e-09  Score=83.02  Aligned_cols=187  Identities=14%  Similarity=0.097  Sum_probs=121.2

Q ss_pred             CCCCCCeEEEeeCCC--cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe-cCC
Q 012712            6 NNNNNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG-SDD   82 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~--~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~d   82 (458)
                      |+ ++.+..+.+.+|  .|+++|+++|+.+.+                     +.- ..........++++.|... -.+
T Consensus        50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~---------------------~~l-~~~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           50 YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ---------------------IEL-GKRYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EE-TTEEEEEEEETTEEEEEEECTTTCCEEEE---------------------EEC-CTTCCEEEEEEETTEEEEEESSS
T ss_pred             EE-CCEEEEECCCCCCceEEEEECCCCcEEEE---------------------Eec-CCccceeEEEEeCCEEEEEEeeC
Confidence            44 456666666665  899999999998754                     111 1222222223335455444 457


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc---cceEEEEEc
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIE  159 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~v~~~~~~  159 (458)
                      +.+.+||.++.+.+.++..+.  .=..++  +  ++..|+.+..++.|.++|..+.+...........   ..++.+.|.
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~--eG~glt--~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDG--EGWGLT--H--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSS--CCCCEE--E--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             CEEEEEECccCcEEEEEECCC--CceEEe--c--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            899999999999988884332  223344  5  7777777777788999999988776654443322   334557776


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC--cceeecceEEEEECCCCCcEEEEec
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR--NYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                       +| .+++..-.+..|.+.|.++++....+.........  .+....-.+.++++|+...++++|-
T Consensus       181 -~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          181 -DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             -TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             -CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             56 66666667889999999999998888764332111  1112235689999998555555543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.08  E-value=2e-07  Score=76.17  Aligned_cols=223  Identities=6%  Similarity=-0.016  Sum_probs=139.7

Q ss_pred             EeeeeeEeecCCC--ceEEEEEecCCCEEEEecC--CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           50 RLGIYAKLDKHRG--CVNTVSFNTDGDILISGSD--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        50 ~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      ..+.++++. |..  ....+.|++++.+.++.+.  ++.|.+.|+.+++.+..+..+.......+++.   ++...++.-
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~   83 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEET
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEe
Confidence            445666674 553  3689999998765555543  57999999999998887632222222345554   334555555


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      .++.+.++|..+.+.+......  ...  ...+++++..++++- .++.|.++|.++.+....+.......     ....
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g--~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~-----p~~~  153 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ--MKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGH-----RVIR  153 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC--SSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTE-----ECCC
T ss_pred             cCCEEEEEECCCCcEEEEEECC--CCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCc-----cccc
Confidence            6899999999888776653332  111  233556775555554 67899999999988777765432100     1113


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC--ccccccccceeEEEeCCCCcEEE-Eec-C
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP--NLIGDEQVGITGLAFSDQSELLV-SYN-D  281 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~-~~~-~  281 (458)
                      ++.+.|. + +..++....++.|.+.|..+++......++...    +.  ............++|+|+++.+. ++. .
T Consensus       154 ~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~----~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~  227 (266)
T 2iwa_A          154 LNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLR----KKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW  227 (266)
T ss_dssp             EEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHH----HHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred             ceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcc----cccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence            5677787 4 566666667889999999998865543321000    00  00000123568999999986554 444 4


Q ss_pred             CcEEEEEccCC
Q 012712          282 EFIYLFTQDMG  292 (458)
Q Consensus       282 ~~i~i~~~~~~  292 (458)
                      +.++..++...
T Consensus       228 ~~v~~i~l~~~  238 (266)
T 2iwa_A          228 PKLFEIKLHLV  238 (266)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEecc
Confidence            57888887653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.07  E-value=2.4e-07  Score=79.89  Aligned_cols=104  Identities=9%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC-------------------CCcceeEEEEccCCCCeEEE
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG-------------------HNDNVFQAKIMPFTDDRSIV  122 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~i~~~~~~~~~~~~~l~  122 (458)
                      ....+++++++|+++.++..++.|..|+..+++.. .+...                   ....+..+++.+  +...|+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~--~~g~l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL--QNNQLY   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET--TTTEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC--CCCcEE
Confidence            34567889999987888888899999998765432 22100                   013478899985  444455


Q ss_pred             EEcCCCcEEEeecccccceeee-eccc-cccceEEEEEcC-CCCeEEEEe
Q 012712          123 TCAADGQVRHAQILERGGVETK-LLGK-HQGRAHKLAIEP-GSPHVFYTC  169 (458)
Q Consensus       123 s~~~dg~i~vw~~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~~l~s~  169 (458)
                      .+...+.|..++..++...... ...+ .......+++.+ ++ ++.++.
T Consensus        96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d  144 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTD  144 (322)
T ss_dssp             EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEE
T ss_pred             EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEEC
Confidence            5544455888886644321110 0111 113467788888 77 555543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.05  E-value=1.3e-08  Score=81.96  Aligned_cols=184  Identities=9%  Similarity=0.005  Sum_probs=121.6

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      +.+..+.+.+|.|+++|+++|+.+.+.                    +... -.--.+++.. +++.+..-.++.+.+||
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~--------------------l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWME--------------------RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEE--------------------ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEE--------------------CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEE
Confidence            556677778889999999999988551                    2211 1112244432 23344445678999999


Q ss_pred             CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc---ceEEEEEcCCCCeEE
Q 012712           90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSPHVF  166 (458)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l  166 (458)
                      .++.+.+.++...  ..-..++  +  +++.|+.+..++.|.++|..+.+.........+..   .++.+.|. +| .++
T Consensus       123 ~~Tl~~~~ti~~~--~eGwGLt--~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~ly  194 (268)
T 3nok_A          123 GMPPQRERTTRYS--GEGWGLC--Y--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIY  194 (268)
T ss_dssp             TTTTEEEEEEECS--SCCCCEE--E--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred             CCcCcEEEEEeCC--CceeEEe--c--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEE
Confidence            9999998888432  2224455  4  67777777778999999999888766544443333   34567776 56 666


Q ss_pred             EEecCCCeEEEEeCCCCCccceeeecccCCCC---cceeecceEEEEECCCCCcEEEEec
Q 012712          167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRR---NYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      +..-.+..|.+.|.++++....+.........   ......-.+.++++|++..++++|-
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            66667889999999999988887754221000   0112234689999998666666653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.05  E-value=9.1e-08  Score=88.91  Aligned_cols=218  Identities=9%  Similarity=-0.017  Sum_probs=115.5

Q ss_pred             CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712           10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD   89 (458)
Q Consensus        10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd   89 (458)
                      +..|+.++.++.|.-+|..+|+.+-+.........            .......-..+++  .+..++.++.|+.|.-+|
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~------------~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD  133 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDI------------RPCCDVVNRGAAI--YGDKVFFGTLDASVVALN  133 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTC------------CCSSCSCCCCCEE--ETTEEEEEETTTEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCccc------------ccccccCCCccEE--ECCEEEEEeCCCEEEEEE
Confidence            34466666544588899999988754110000000            0000000011222  245677788899999999


Q ss_pred             CCCcceeeeeccCC-C--ccee-EEEEcc-CCCCe-EEEEEc------CCCcEEEeecccccceeeeeccc-cc------
Q 012712           90 WKTERVKLSFHSGH-N--DNVF-QAKIMP-FTDDR-SIVTCA------ADGQVRHAQILERGGVETKLLGK-HQ------  150 (458)
Q Consensus        90 ~~~~~~~~~~~~~~-~--~~i~-~~~~~~-~~~~~-~l~s~~------~dg~i~vw~~~~~~~~~~~~~~~-~~------  150 (458)
                      .++|+.+.+..... .  ..+. ...... ..+++ .+++++      .+|.|.-+|..+++.+....... +.      
T Consensus       134 ~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~  213 (582)
T 1flg_A          134 KNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGK  213 (582)
T ss_dssp             SSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTE
T ss_pred             CCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCc
Confidence            99999877653221 1  0111 111111 00122 555554      37889999998888765432210 00      


Q ss_pred             --------------------------------cceEEEEEcCCCCeEEEEecC--------------------C----Ce
Q 012712          151 --------------------------------GRAHKLAIEPGSPHVFYTCGE--------------------D----GL  174 (458)
Q Consensus       151 --------------------------------~~v~~~~~~~~~~~~l~s~~~--------------------d----g~  174 (458)
                                                      ..-..+++.|... +++.+..                    |    +.
T Consensus       214 ~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~  292 (582)
T 1flg_A          214 DSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSG  292 (582)
T ss_dssp             EEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSE
T ss_pred             ccccccccccccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCcccccCCCcccccCCcccce
Confidence                                            0001345666663 4554432                    2    68


Q ss_pred             EEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC-CCCC--cEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      |..+|.++++.+..++..............++ -+... .++.  ..++.++.+|.++++|.++++.+....
T Consensus       293 v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          293 QVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence            99999999998877654321100000001112 12222 3322  478889999999999999988654433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=1.4e-07  Score=89.49  Aligned_cols=112  Identities=12%  Similarity=0.070  Sum_probs=70.2

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCcc---------e-eEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDN---------V-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------i-~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      +..|+.++.++.|.-+|..+|+.+.++.......         + ..+++    .+..++.++.|+.|..+|..+++.+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEee
Confidence            4566677778899999999999887763211100         0 12233    34567788889999999999998876


Q ss_pred             eeeccccc--cceEE-EEEcCCCCeEEEEecC------CCeEEEEeCCCCCccceeee
Q 012712          143 TKLLGKHQ--GRAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       143 ~~~~~~~~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~  191 (458)
                      ........  ..+.+ ..+ .++ . ++.+..      +|.|..+|.++++.+..+..
T Consensus       142 ~~~~~~~~~~~~~~~~P~v-~~~-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRV-VKG-K-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEE-ETT-E-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             eeccCCCCCcceecCCCEE-ECC-E-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            64332111  11110 011 133 4 444432      58999999999998877653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.98  E-value=6.1e-07  Score=72.93  Aligned_cols=221  Identities=7%  Similarity=0.116  Sum_probs=136.3

Q ss_pred             eEeecCCCceEEEEEecCCCEEE-EecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           55 AKLDKHRGCVNTVSFNTDGDILI-SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        55 ~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      +.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.+..+..+-....-.+++.+  ++.++++.-.++.+.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~--~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG--DNQFVISDERDYAIYVI   96 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS--TTEEEEEETTTTEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC--CCEEEEEECCCCcEEEE
Confidence            45667667899999999876555 46678889999987 7776666333335678889988  88877776667888888


Q ss_pred             ecccccce---eeeec----cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC---CCccceeeecccCCCCcceee
Q 012712          134 QILERGGV---ETKLL----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       134 ~~~~~~~~---~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      ++.....+   ....+    .........++|+|.+..+ +++.......+|.+..   ............   ......
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L-~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~---~~~~~~  172 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF-WFFKEKNPIEVYKVNGLLSSNELHISKDKAL---QRQFTL  172 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE-EEEEESSSEEEEEEESTTCSSCCEEEECHHH---HHTCCS
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE-EEEECcCCceEEEEcccccCCceeeecchhh---cccccc
Confidence            87665431   11111    1234557899999998544 4454444444554431   111111111000   000012


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF  283 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  283 (458)
                      ..+.+++++|..+++++....+..+..+|.... ....+.+...      ..-..........|+|.++|++.+++-.+-
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g------~~~l~~~~~qpEGia~d~~G~lyIvsE~n~  245 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKG------SRGLSHNIKQAEGVAMDASGNIYIVSEPNR  245 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTT------GGGCSSCCCSEEEEEECTTCCEEEEETTTE
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCc------cCCcccccCCCCeeEECCCCCEEEEcCCce
Confidence            247899999987788888888899999997644 3222221110      000011123678999999999777755556


Q ss_pred             EEEEEc
Q 012712          284 IYLFTQ  289 (458)
Q Consensus       284 i~i~~~  289 (458)
                      ++.|..
T Consensus       246 ~y~f~~  251 (255)
T 3qqz_A          246 FYRFTP  251 (255)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.98  E-value=5.5e-06  Score=70.64  Aligned_cols=124  Identities=8%  Similarity=0.009  Sum_probs=76.5

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--c
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--Q  129 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~  129 (458)
                      +.+..+... .....++|+++|+++++-..++.|..||.+.. ....+  ........+++.+  +++++++.....  .
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~--dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTS--NGDLVATGWNADSIP   96 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECT--TSCEEEEEECTTSCE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcC--CCcEEEEeccCCcce
Confidence            444555433 45778999999998777777899999997653 32322  2235688999999  988666554332  3


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG  183 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  183 (458)
                      |..++..+++........ .......++..+++ ..+++-..++.|..+|...+
T Consensus        97 v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLP-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEEEECTTSCEEEEEECT-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTT
T ss_pred             EEEEcCCCCeEEEEEeCC-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCC
Confidence            656666565533221121 12223445555554 55555556788888887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.98  E-value=2.6e-07  Score=79.65  Aligned_cols=247  Identities=10%  Similarity=0.009  Sum_probs=139.7

Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC----Cc------ceeecceEEEEECCCCCcEEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR----RN------YMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~------~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      ...++++++++ .+++++..++.|..||..+++.. .+........    .+      ......+..+++.+++++ |++
T Consensus        20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             CCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            45678899987 66777888899999998765432 2221100000    00      001124688999973244 444


Q ss_pred             ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecC------------------C
Q 012712          222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND------------------E  282 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~------------------~  282 (458)
                      +...+.|..+|..+++.....           .............+++.+ +|.+.++...                  +
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~-----------~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLA-----------TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEE-----------SEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             EECCCCEEEEeCCCCEEEEec-----------ccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence            544455888887654321000           000001123467899999 8987776432                  3


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-  361 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-  361 (458)
                      .+..||..++.                                       ...+....  .....+++ +|+|++|+.+ 
T Consensus       166 ~v~~~d~~~~~---------------------------------------~~~~~~~~--~~p~gia~-~~dg~~lyv~d  203 (322)
T 2fp8_A          166 RLIKYDPSTKE---------------------------------------TTLLLKEL--HVPGGAEV-SADSSFVLVAE  203 (322)
T ss_dssp             EEEEEETTTTE---------------------------------------EEEEEEEE--SCCCEEEE-CTTSSEEEEEE
T ss_pred             eEEEEeCCCCE---------------------------------------EEEeccCC--ccCcceEE-CCCCCEEEEEe
Confidence            46666654321                                       01111000  12456787 9999866655 


Q ss_pred             cCCCeEEEEEecCCe--EEEEeecCCceeeEEEecCCCCeEEEeec----------CCcEEEecCCcccccccccc----
Q 012712          362 SDCGRIFIWKKKGGE--LIRVIEADRHVVNCIEPHPHSTVLASSGI----------ESDIKILTPNAADRATLPTN----  425 (458)
Q Consensus       362 ~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------d~~i~iw~~~~~~~~~~~~~----  425 (458)
                      ..++.|++|++....  ....+....+ ...+++.++|++.++...          .+.|..++........+...    
T Consensus       204 ~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~  282 (322)
T 2fp8_A          204 FLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA  282 (322)
T ss_dssp             GGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT
T ss_pred             CCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc
Confidence            556899999986421  1122211223 788999999987776544          46788888764322222221    


Q ss_pred             cccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          426 IEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       426 ~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      ...++.+++ .++.+.++....+.|..++.-
T Consensus       283 ~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          283 GEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             cccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            234666666 467766676677888888753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.95  E-value=1.1e-07  Score=75.97  Aligned_cols=184  Identities=14%  Similarity=0.079  Sum_probs=118.6

Q ss_pred             CCeEEEeeCC--CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEE
Q 012712           10 NKRARTSVDK--ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVI   86 (458)
Q Consensus        10 ~~~l~~~~~d--~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~   86 (458)
                      +.+..+.+.+  +.|+.+|+++|+.+.+                   ..+..+.- --.+++.  ++.| ...-.++.+.
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~-------------------~~l~~~~f-geGi~~~--~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQR-------------------AEVPPPYF-GAGIVAW--RDRLIQLTWRNHEGF   88 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEE-------------------EECCTTCC-EEEEEEE--TTEEEEEESSSSEEE
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEE-------------------EeCCCCcc-eeEEEEe--CCEEEEEEeeCCEEE
Confidence            4455555554  4899999999998754                   11222111 1123333  4444 4445678999


Q ss_pred             EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc---ceEEEEEcCCCC
Q 012712           87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG---RAHKLAIEPGSP  163 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~  163 (458)
                      +||.++.+.+.++..+.  .=..++  +  ++..|+.+..++.|.++|..+.+.........+..   .++.+.+. ++ 
T Consensus        89 v~D~~tl~~~~ti~~~~--~Gwglt--~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-  160 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPG--EGWALT--S--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-  160 (243)
T ss_dssp             EEETTTTEEEEEEECSS--CCCEEE--E--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-
T ss_pred             EEECCcCcEEEEEeCCC--CceEEe--e--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-
Confidence            99999999988884332  224554  4  77777777778999999999887766544443332   34556665 55 


Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc---ceeecceEEEEECCCCCcEEEEec
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN---YMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      .+++..-.+..|.+.|.++++....+..........   .....-.+.++++|++..++++|-
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            666666567899999999999988887654322111   112235689999998655666554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.95  E-value=5.8e-07  Score=83.49  Aligned_cols=112  Identities=13%  Similarity=0.072  Sum_probs=70.3

Q ss_pred             CCEEEEecC-CCeEEEEEC-CCcceeeeeccCCCcce----------eEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHNDNV----------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        73 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~~i----------~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      +..++.++. ++.|.-+|. .+|+.+.++.......+          ..++.    ++..++.++.|+.+..+|..+++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~  137 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCE
Confidence            445666666 788999999 89998777632211111          11233    345677788899999999999988


Q ss_pred             eeeeecccccc--ceEE-EEEcCCCCeEEEEecC------CCeEEEEeCCCCCccceeee
Q 012712          141 VETKLLGKHQG--RAHK-LAIEPGSPHVFYTCGE------DGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       141 ~~~~~~~~~~~--~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~  191 (458)
                      +.......+..  .+.+ .... ++ . ++.++.      ++.|..+|.++++.+..+..
T Consensus       138 ~W~~~~~~~~~~~~~~~~P~v~-~g-~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          138 NWEVEVCDPKVGSTLTQAPFVA-KD-T-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEE-TT-E-EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEecCCCCCccceeccCCEEE-CC-E-EEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            76644443221  1111 1111 33 4 444443      78999999999998776653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.94  E-value=4.9e-07  Score=72.88  Aligned_cols=208  Identities=10%  Similarity=-0.009  Sum_probs=129.9

Q ss_pred             eeeeEeecCC--CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           52 GIYAKLDKHR--GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        52 ~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      ++++++. |.  .....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ .....---.+++.   .+.+.+..-.++.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~---g~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD---GERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC---SSCEEEEESSSCE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe---CCEEEEEEccCCE
Confidence            5666663 54  345789998 4667778888899999999999987776 2222111235543   2344444556899


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      +.++|..+.+.+.+......   -..++  +++..+ +.+..++.|.++|.++.+....+.......     ....++.+
T Consensus       118 v~V~D~~Tl~~~~ti~~~~e---GwGLt--~Dg~~L-~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-----~v~~lNeL  186 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYSGE---GWGLC--YWNGKL-VRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-----PVELINEL  186 (268)
T ss_dssp             EEEEETTTTEEEEEEECSSC---CCCEE--EETTEE-EEECSSSEEEEECTTTCCEEEEEECEETTE-----ECCCEEEE
T ss_pred             EEEEECCcCcEEEEEeCCCc---eeEEe--cCCCEE-EEECCCCEEEEEcCCCCeEEEEEEeCCCCc-----cccccccc
Confidence            99999999888776444322   23333  556444 444558899999999998877776432110     11235667


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                      .|. + +.+++....+..|.+.|.++++......+....... . ........-.+.||++|+++.|...+
T Consensus       187 e~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-~-~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          187 ECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV-A-GQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-T-TTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-c-ccccCcCCceEEEEEcCCCCEEEEeC
Confidence            776 3 566666667889999999999876655442100000 0 00111234578999999865444444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.94  E-value=2.2e-07  Score=88.40  Aligned_cols=289  Identities=9%  Similarity=-0.019  Sum_probs=148.3

Q ss_pred             EEEEccCCCCeEEEEEcCCC-----------cEEEeecccccceeeeecc-ccccceEEEEEcCCCCeEEEEecC-CCeE
Q 012712          109 QAKIMPFTDDRSIVTCAADG-----------QVRHAQILERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGE-DGLV  175 (458)
Q Consensus       109 ~~~~~~~~~~~~l~s~~~dg-----------~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-dg~i  175 (458)
                      ++++.|. +++.++.|+.+.           .+.+||..+++......+. .+.....++++.+++ .+++.|+. +..+
T Consensus       190 ~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCE
T ss_pred             eEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCce
Confidence            4455541 677888876542           5788999887654322221 122334457778888 68888874 5689


Q ss_pred             EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CC-----CeEEEEecCCCccCCCccCC-CCC
Q 012712          176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SD-----EYTRLYDIRKYKWDGSTDFG-QPA  248 (458)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~-~~~  248 (458)
                      .+||..+.+-...-...   .     .. .-.+++..++ +++++.|+ .+     ..+.+||..+.+........ .+.
T Consensus       268 ~~yd~~t~~W~~~~~~~---~-----~R-~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~  337 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQ---V-----AR-GYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM  337 (656)
T ss_dssp             EEEEGGGTEEEECCCCS---S-----CC-SSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred             EEecCcCCceeECCCCC---c-----cc-cccceEEecC-CeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence            99998876533221111   0     00 1134455565 57888888 34     46999999877643210000 000


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD  328 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (458)
                      ...... ........+..+.. .+|+.+..+....+..||..+......                               
T Consensus       338 ~~~~~~-~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~-------------------------------  384 (656)
T 1k3i_A          338 LTADKQ-GLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKS-------------------------------  384 (656)
T ss_dssp             CCCCTT-GGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEE-------------------------------
T ss_pred             cccccc-ceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeec-------------------------------
Confidence            000000 00000111111111 122222222234577788765311000                               


Q ss_pred             cccCceee----cCccceeeeeEEEEecCCCcEEEEecCCC-----------eEEEEEecCCeEEEEe--ecCCce-eeE
Q 012712          329 VRIAPQVY----KGHRNCVTVKGVNFFGPKCEYVVSGSDCG-----------RIFIWKKKGGELIRVI--EADRHV-VNC  390 (458)
Q Consensus       329 ~~~~~~~~----~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~-v~~  390 (458)
                       .. ....    .....  .-.++.+-..++++++.|+.++           .+.+||..+.+-....  ..+... -.+
T Consensus       385 -~~-~~~~~~~~~~~~~--~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~  460 (656)
T 1k3i_A          385 -AG-KRQSNRGVAPDAM--CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  460 (656)
T ss_dssp             -EE-ECEETTEECCCCB--TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             -CC-ccccccccCCCCC--CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence             00 0000    00000  1233333124788888888543           6788887766544332  112222 234


Q ss_pred             EEecCCCCeEEEeecC-----------CcEEEecCCccccccccc---ccccEEEEEEecCCcEEEeeec
Q 012712          391 IEPHPHSTVLASSGIE-----------SDIKILTPNAADRATLPT---NIEQVCFSIYSADYWWSKSQNF  446 (458)
Q Consensus       391 ~~~s~~~~~l~s~~~d-----------~~i~iw~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~s~~~  446 (458)
                      ++..|++++++.|+.+           ..+.+||+.+.+...+..   .........+.|||+.++.|+.
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            5667899999999865           468999998765433221   1111334557799999999885

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.92  E-value=1.6e-06  Score=80.67  Aligned_cols=357  Identities=10%  Similarity=0.017  Sum_probs=174.4

Q ss_pred             CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcce--------eEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712           72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNV--------FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET  143 (458)
Q Consensus        72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i--------~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  143 (458)
                      ++. ++.++.++.|.-+|..+|+.+.++........        ..+++    .+..++.++.++.|.-+|..+++.+..
T Consensus        68 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~  142 (582)
T 1flg_A           68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWK  142 (582)
T ss_dssp             TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred             CCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEee
Confidence            444 44445434499999999998777632211100        12223    344677777899999999999988766


Q ss_pred             eecccccc--ceE---EEEEc-CCCCeEEEEec------CCCeEEEEeCCCCCccceeeecccC---------------C
Q 012712          144 KLLGKHQG--RAH---KLAIE-PGSPHVFYTCG------EDGLVQHFDLRTGAATELFTCRPID---------------D  196 (458)
Q Consensus       144 ~~~~~~~~--~v~---~~~~~-~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------~  196 (458)
                      .....+..  .+.   .+.=. .++...+++++      .++.|..+|.++++.+.........               .
T Consensus       143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g  222 (582)
T 1flg_A          143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK  222 (582)
T ss_dssp             EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred             ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence            44433211  111   11111 12322566654      3789999999999877654321100               0


Q ss_pred             C---Cc-------------ceeecceEEEEECCCCCcEEEEecC--------------------C----CeEEEEecCCC
Q 012712          197 R---RN-------------YMTVVNLNAIAIDPRNANLFAVAGS--------------------D----EYTRLYDIRKY  236 (458)
Q Consensus       197 ~---~~-------------~~~~~~v~~~~~~p~~~~~l~~~~~--------------------d----g~i~i~d~~~~  236 (458)
                      .   .+             ......-..++++|+ ..+++.+..                    |    +.|.-+|.+++
T Consensus       223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~-~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG  301 (582)
T 1flg_A          223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE-TNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG  301 (582)
T ss_dssp             CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT-TTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred             cccCCCccccccccccccccCCccccCCceEcCC-CCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence            0   00             000000124567776 345555542                    2    57999999988


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeC-CCCc---EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~---~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      +..-..+...... .    -......++. +... .+|+   .++.++ ++.++++|..+++.....+............
T Consensus       302 ~~~W~~q~~~~d~-w----d~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~  375 (582)
T 1flg_A          302 EVKWFYQHTPNDA-W----DFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHID  375 (582)
T ss_dssp             CEEEEEESSTTCC-S----CCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEEC
T ss_pred             CEEEEEeCCCCCc-c----cccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccc
Confidence            7543322211000 0    0000011111 1221 4663   566665 5689999998887654433221000000000


Q ss_pred             cCCCCccccCCCCC------CcccccCceeecCccceeeeeEEEEecCCCcEEEEe------------------------
Q 012712          312 MGSDHTSAASPSTA------NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG------------------------  361 (458)
Q Consensus       312 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~------------------------  361 (458)
                      ... +..+......      ............+......-..+++ +|+...+++.                        
T Consensus       376 ~~~-g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~-dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  453 (582)
T 1flg_A          376 LKT-GRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAY-SQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGM  453 (582)
T ss_dssp             TTT-CCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEE-CTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccC-CCEeEccccCCccccccccCCCceEECcCCccccCCCCceE-CCCCCEEEEechhcceeeecccccccCCCceecc
Confidence            000 0000000000      0000000000011000000112333 5544333322                        


Q ss_pred             ---------cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEE--
Q 012712          362 ---------SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVC--  430 (458)
Q Consensus       362 ---------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~--  430 (458)
                               ..+|.|.-||+.+++.+-+..... ++..-.....+.+++.++.|+.++.||.++++.+-.......+.  
T Consensus       454 ~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~  532 (582)
T 1flg_A          454 GFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP  532 (582)
T ss_dssp             EEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccC
Confidence                     136889999999999887665432 22222222246678889999999999999998763322223332  


Q ss_pred             EEEEecCCc-EEEe
Q 012712          431 FSIYSADYW-WSKS  443 (458)
Q Consensus       431 ~~~~s~d~~-~l~s  443 (458)
                      -+.|..+|+ |+++
T Consensus       533 P~~y~~~G~qYv~~  546 (582)
T 1flg_A          533 PITWEQDGEQYLGV  546 (582)
T ss_dssp             CEEEEETTEEEEEE
T ss_pred             ceEEEECCEEEEEE
Confidence            366778995 5554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.89  E-value=1.7e-05  Score=67.80  Aligned_cols=237  Identities=11%  Similarity=0.048  Sum_probs=139.2

Q ss_pred             EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeecccc---cceeeeeccccc
Q 012712           75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILER---GGVETKLLGKHQ  150 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~  150 (458)
                      +|+.+.. ..|+..|++..+....+  ........++|.+  .+. ++++-...+.|..+++...   ..... .+....
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEE--CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEE-EECSSC
T ss_pred             EEEEECC-CeEEEEECCCcceEehh--cCCCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEE-EEeCCC
Confidence            3444443 45888998877654433  2345678999998  554 4555556788999988651   22111 122222


Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTR  229 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~  229 (458)
                      .....+++.+.+.+++++-...+.|.+.++.......... .         .......++++|.++.++++.... +.|.
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~---------~~~~P~~iavdp~~g~ly~~d~~~~~~I~  146 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E---------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK  146 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-C---------TTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-C---------CCCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence            3457899987665777777778899999987543322221 1         112468899999756555555443 7888


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccc
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRS  307 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~  307 (458)
                      .+++.....               ..+....-.....++++|++..|..+.  .+.|..++++...              
T Consensus       147 ~~~~dG~~~---------------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~--------------  197 (316)
T 1ijq_A          147 KGGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--------------  197 (316)
T ss_dssp             EEETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------------
T ss_pred             EEcCCCCCe---------------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc--------------
Confidence            888754221               111111234578999998776555544  3479999976421              


Q ss_pred             cccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712          308 EASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  383 (458)
                                               .+.+ ..........++++ . .+.++++-...+.|..++..+++.+..+..
T Consensus       198 -------------------------~~~~~~~~~~~~~P~giav-~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~  247 (316)
T 1ijq_A          198 -------------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (316)
T ss_dssp             -------------------------CEEEEECTTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             -------------------------eEEEeecCCccCCcEEEEE-E-CCEEEEEECCCCeEEEEeCCCCcceEEEec
Confidence                                     1111 11000001356666 4 355666666778999999878877666653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.89  E-value=2.7e-06  Score=68.06  Aligned_cols=213  Identities=14%  Similarity=0.085  Sum_probs=132.5

Q ss_pred             EeeeeeEeecCC--CceEEEEEecCCCEEEEecCC--CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           50 RLGIYAKLDKHR--GCVNTVSFNTDGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        50 ~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      ..++++++ .|.  .....+.|++ +.+..+.+.+  ..|+.+|+++++.+......  .........+. ++......-
T Consensus         8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~-~~~ly~ltw   82 (243)
T 3mbr_X            8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAW-RDRLIQLTW   82 (243)
T ss_dssp             CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEE-TTEEEEEES
T ss_pred             ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcceeEEEEe-CCEEEEEEe
Confidence            34566666 465  4577899986 5666666665  48999999999988776322  23333322330 344555556


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      .++.+.++|..+.+.+.+....+   .-..++  +++..++++- .++.|.++|.++.+....+.......     ....
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~---~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~-----~~~~  151 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPG---EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGR-----PLDN  151 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSS---CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTE-----ECCC
T ss_pred             eCCEEEEEECCcCcEEEEEeCCC---CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCc-----cccc
Confidence            68999999999888777644433   223444  5564555554 57899999999998877776432100     1123


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE  282 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  282 (458)
                      ++.+.+. + +.+++....+..|.+.|.++++......+........  ........-.+.||++|+++.|...+..
T Consensus       152 lNeLe~~-~-G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          152 LNELEWV-N-GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEEEE-T-TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             ceeeEEe-C-CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            5566665 3 5666666677899999999998776655432111000  0001123457899999987655555543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.89  E-value=1.9e-05  Score=68.47  Aligned_cols=258  Identities=10%  Similarity=0.009  Sum_probs=150.6

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV  141 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  141 (458)
                      +..+|.+..++. +|+.+.. ..|+..+++........ . ....+..++|.+. ++.++++-...+.|..+++......
T Consensus        34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~  108 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLL-N-NLENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNVE  108 (349)
T ss_dssp             TSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEE-C-SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCCcccccccCc-eeEeecc-cceEEEeCCCCeeEEee-c-CCCceEEEEEecc-ccEEEEEeccCCceEEEecCCCCce
Confidence            334565555543 4444433 45888887765443322 2 3345789999971 3444455556788988988665432


Q ss_pred             eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      ..  +.........+++.+.+.+++++-...+.|.+.++.......... .         .......++++|.++.++++
T Consensus       109 ~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          109 EV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q---------SLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             EE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-T---------TCSCEEEEEEETTTTEEEEE
T ss_pred             EE--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-C---------CCCCcceEEEecCcCeEEEe
Confidence            21  222223457899998665777777778899999987554322221 1         11246889999976666666


Q ss_pred             ecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCC
Q 012712          222 AGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       222 ~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~  298 (458)
                      -... +.|..+++.....               ..+....-.....++++|++..|..+.  .+.|..++++....    
T Consensus       177 d~~~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~----  237 (349)
T 3v64_C          177 DWGNTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR----  237 (349)
T ss_dssp             ECSSSCEEEEEETTSCSC---------------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----
T ss_pred             ccCCCCEEEEEeCCCCCc---------------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce----
Confidence            6555 7888888764321               111111234578999998766555444  34688888764210    


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  378 (458)
                                                        ...+.....  ...++++ . .+..+++-...+.|..++..+|+.+
T Consensus       238 ----------------------------------~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          238 ----------------------------------KAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             ----------------------------------EEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             ----------------------------------EEEEeCCCC--CceEEEE-E-CCEEEEecCCCCeEEEEEccCCCcc
Confidence                                              011111111  1355665 3 3455556666788988887778777


Q ss_pred             EEeecCCceeeEEEe
Q 012712          379 RVIEADRHVVNCIEP  393 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~  393 (458)
                      ..+.........+++
T Consensus       280 ~~i~~~~~~p~gi~v  294 (349)
T 3v64_C          280 EIIRNKLHFPMDIHT  294 (349)
T ss_dssp             EEEECSCSCCCCEEE
T ss_pred             EEeccCCCCCceEEE
Confidence            666543333444544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.87  E-value=2.3e-06  Score=79.46  Aligned_cols=114  Identities=11%  Similarity=0.017  Sum_probs=72.0

Q ss_pred             CCEEEEecC-CCeEEEEEC-CCcceeeeeccCCCc----------ceeEEEEccCCCCeE----EEEEcCCCcEEEeecc
Q 012712           73 GDILISGSD-DRRVILWDW-KTERVKLSFHSGHND----------NVFQAKIMPFTDDRS----IVTCAADGQVRHAQIL  136 (458)
Q Consensus        73 ~~~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~~----l~s~~~dg~i~vw~~~  136 (458)
                      +..|+.++. ++.|.-+|. .+|+.+.++......          ....++++|  .+..    |+.++.|+.+.-+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p--~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP--GDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC--CCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe--cCCcceeEEEEEcCCCEEEEEECC
Confidence            445666666 788999999 899987776322111          012345544  3444    7888889999999999


Q ss_pred             cccceeeeecccccc--ceEE-EEEcCCCCeEEEEec------CCCeEEEEeCCCCCccceeee
Q 012712          137 ERGGVETKLLGKHQG--RAHK-LAIEPGSPHVFYTCG------EDGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~  191 (458)
                      +++.+.......+..  .+.+ -.+. ++ . ++.++      .++.|+.+|.++++.+..+..
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYVV-KD-K-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEE-TT-E-EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCCEEEeecCCCCCccceeecCCEEE-CC-E-EEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            998876644433211  1111 1111 34 4 44444      379999999999998766654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.87  E-value=6.4e-07  Score=85.19  Aligned_cols=245  Identities=10%  Similarity=0.051  Sum_probs=132.5

Q ss_pred             CCCeEEEeeCCC-----------cEEEEEccccccccccccccccccccceEEeeeeeEe-ecCCCceEEEEEecCCCEE
Q 012712            9 NNKRARTSVDKA-----------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDIL   76 (458)
Q Consensus         9 ~~~~l~~~~~d~-----------~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l   76 (458)
                      ++++++.|+.+.           .+.+||..+++....                   ..+ ..+.....++++.++++++
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-------------------~~~~~~~~~~~~~~~~~~~g~ly  257 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-------------------TVTVTKHDMFCPGISMDGNGQIV  257 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-------------------EEEECSCCCSSCEEEECTTSCEE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-------------------cccCCCCCCccccccCCCCCCEE
Confidence            777888877543           588899988765421                   112 2233344467788899999


Q ss_pred             EEecC-CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc-CC-----CcEEEeecccccceeee-----
Q 012712           77 ISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-AD-----GQVRHAQILERGGVETK-----  144 (458)
Q Consensus        77 ~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d-----g~i~vw~~~~~~~~~~~-----  144 (458)
                      +.|+. +..+.+||..+++-...-.......-.+++..+  +++.++.|+ .+     ..+.+||..++......     
T Consensus       258 v~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~  335 (656)
T 1k3i_A          258 VTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN  335 (656)
T ss_dssp             EECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred             EeCCCCCCceEEecCcCCceeECCCCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence            99984 458999998876532221111111223456667  899999988 34     46899998776543210     


Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCC---------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGED---------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      .+.....   ...+..++ ++++.++.+         ..+..||..+.............. ........-.++.|...+
T Consensus       336 p~~~~~~---~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~-~~~~~~~~~~av~~~~~~  410 (656)
T 1k3i_A          336 PMLTADK---QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR-GVAPDAMCGNAVMYDAVK  410 (656)
T ss_dssp             GGCCCCT---TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT-EECCCCBTCEEEEEETTT
T ss_pred             ccccccc---cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc-ccCCCCCCCceEeccCCC
Confidence            0000000   01122333 344555444         356788887765433222111000 000000112445554434


Q ss_pred             CcEEEEecCCC-----------eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---
Q 012712          216 ANLFAVAGSDE-----------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---  281 (458)
Q Consensus       216 ~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  281 (458)
                      +++++.|+.++           .+.+||..+.+......          .. +. ....-.+++..|++++++.++.   
T Consensus       411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~----------~~-mp-~~R~~~~~~~l~~g~i~v~GG~~~~  478 (656)
T 1k3i_A          411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS----------NG-LY-FARTFHTSVVLPDGSTFITGGQRRG  478 (656)
T ss_dssp             TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT----------TC-CS-SCCBSCEEEECTTSCEEEECCBSBC
T ss_pred             CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc----------CC-CC-CCcccCCeEECCCCCEEEECCcccC
Confidence            67888887543           67788877655321100          00 00 1112234566789999988762   


Q ss_pred             ---------CcEEEEEccC
Q 012712          282 ---------EFIYLFTQDM  291 (458)
Q Consensus       282 ---------~~i~i~~~~~  291 (458)
                               ..+.+||..+
T Consensus       479 ~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          479 IPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             CTTCCCSBCCCCEEEEGGG
T ss_pred             cCcCCCCcccceEEEcCCC
Confidence                     2478888765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.85  E-value=7e-05  Score=70.14  Aligned_cols=324  Identities=11%  Similarity=0.030  Sum_probs=170.2

Q ss_pred             CceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccc
Q 012712           62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILER  138 (458)
Q Consensus        62 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~  138 (458)
                      .....|++.+.+. +.++-...+.|.+.+++.... ..+....-.....|++.|  .+..|+.+..  .+.|...++...
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG~  160 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGS  160 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCCC
Confidence            5678999998655 445556678999999875433 233233445678899998  6555544442  355666665432


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      .....  ..........+++++++..++++-...+.|...|+...........          .......+++.++  .+
T Consensus       161 ~~~~l--~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~----------~~~~P~gi~~~~~--~l  226 (619)
T 3s94_A          161 SRFII--INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG----------SLPHPFALTLFED--IL  226 (619)
T ss_dssp             SCEEE--ECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESSS--EE
T ss_pred             ceEEE--EeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC----------CCCCceEEEEeCC--EE
Confidence            22211  2223345788999997757777767778899999875433222210          0112356777653  56


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccC--CCCCCC--cCCCccc------cccccceeEEEe-CC----------CC----
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDF--GQPADY--FCPPNLI------GDEQVGITGLAF-SD----------QS----  273 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~--~~~~~~~------~~~~~~i~~~~~-~~----------~~----  273 (458)
                      +++-..++.|...|..+++.......  ..|...  +.+....      ....+....+++ +|          .|    
T Consensus       227 y~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~  306 (619)
T 3s94_A          227 YWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLL  306 (619)
T ss_dssp             EEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBC
T ss_pred             EEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheec
Confidence            66666778899999877653222111  011000  0000000      000000011111 11          11    


Q ss_pred             -----------cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce
Q 012712          274 -----------ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC  342 (458)
Q Consensus       274 -----------~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (458)
                                 .+|+.+....|+..++.....                                   ......+.+-.  
T Consensus       307 ~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~-----------------------------------~~~~~~~~~l~--  349 (619)
T 3s94_A          307 ENGKTCKDGATELLLLARRTDLRRISLDTPDF-----------------------------------TDIVLQLEDIR--  349 (619)
T ss_dssp             TTSSCBCSSCSEEEEEEESSCEEEEESSSTTC-----------------------------------CCEECCCSCCS--
T ss_pred             ccCcccCCCCceEEEEEcccceEEEecCCCcc-----------------------------------ceeEEeccccC--
Confidence                       122222222333333322100                                   00000111111  


Q ss_pred             eeeeEEEEecCCCcEEE-EecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCccccc
Q 012712          343 VTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       343 ~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                       ...+++| ++.+..|+ +-...+.|+.+++........+...-..+..+++.+.++ +..+-+..+.|.+.++.+....
T Consensus       350 -~~~~ld~-d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~  427 (619)
T 3s94_A          350 -HAIAIDY-DPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK  427 (619)
T ss_dssp             -SEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             -ccEEEEE-EcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE
Confidence             2577888 77555554 444578899999865443333333335678899987555 4455456788999998876543


Q ss_pred             ccc-cccccEEEEEEecCCcEE
Q 012712          421 TLP-TNIEQVCFSIYSADYWWS  441 (458)
Q Consensus       421 ~~~-~~~~~v~~~~~s~d~~~l  441 (458)
                      .+. .......++++.|...+|
T Consensus       428 ~l~~~~l~~P~~iavdp~~G~l  449 (619)
T 3s94_A          428 ILISEDLEEPRAIVLDPMVGYM  449 (619)
T ss_dssp             EEECTTCCSEEEEEEETTTTEE
T ss_pred             EEEECCCCCeeeEEEEcCCCcE
Confidence            332 344568899999974333

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.84  E-value=1.4e-05  Score=70.46  Aligned_cols=255  Identities=10%  Similarity=0.016  Sum_probs=148.7

Q ss_pred             EEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712           65 NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK  144 (458)
Q Consensus        65 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  144 (458)
                      .|.+..++ .+|+.+.. ..|+..++......... . .......++|.+. ++.++++-...+.|..+++........ 
T Consensus        80 ~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~~~~~~-  153 (386)
T 3v65_B           80 SCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLL-N-NLENAIALDFHHR-RELVFWSDVTLDRILRANLNGSNVEEV-  153 (386)
T ss_dssp             CEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEE-C-SCSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCCEEEE-
T ss_pred             eECCcccc-ceeEeecC-ccceeeccCCCcEEEEe-c-CCCccEEEEEecC-CCeEEEEeCCCCcEEEEecCCCCcEEE-
Confidence            34444443 34444433 56888888765543333 2 3345789999971 344555555678898898865542221 


Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                       +.........+++.+.+..++++-...+.|.+.++........+. .         .......++++|.++.++++-..
T Consensus       154 -~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~---------~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          154 -VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-Q---------SLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             -ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-S---------SCSCEEEEEEETTTTEEEEEECS
T ss_pred             -EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-C---------CCCCCcEEEEEcCCCeEEEeccC
Confidence             222223456788988665777777777889998887544322221 1         11246889999976666666555


Q ss_pred             C-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCC
Q 012712          225 D-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSS  301 (458)
Q Consensus       225 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~  301 (458)
                      . +.|..+++.....               ..+..........|+++|++..|..+.  .+.|..+++....        
T Consensus       223 ~~~~I~r~~~dG~~~---------------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~--------  279 (386)
T 3v65_B          223 NTPRIEASSMDGSGR---------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH--------  279 (386)
T ss_dssp             SSCEEEEEETTSCSC---------------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS--------
T ss_pred             CCCEEEEEeCCCCCc---------------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe--------
Confidence            5 7888888764321               111112234568999998766555444  3468888875421        


Q ss_pred             CccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712          302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI  381 (458)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  381 (458)
                                                    ....+.....  ...++++ . .+.++++-...+.|..++..+++.+..+
T Consensus       280 ------------------------------~~~~~~~~~~--~P~giav-~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          280 ------------------------------RKAVISQGLP--HPFAITV-F-EDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             ------------------------------CEEEECSSCS--SEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ------------------------------eEEEEECCCC--CceEEEE-E-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence                                          0111111111  1356665 3 3455556666789999997788777777


Q ss_pred             ecCCceeeEEEe
Q 012712          382 EADRHVVNCIEP  393 (458)
Q Consensus       382 ~~~~~~v~~~~~  393 (458)
                      .........+++
T Consensus       326 ~~~~~~p~gi~v  337 (386)
T 3v65_B          326 RNKLHFPMDIHT  337 (386)
T ss_dssp             ECSCSCCCCEEE
T ss_pred             ccCCCCCceEEE
Confidence            644344455544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.83  E-value=2.5e-06  Score=72.78  Aligned_cols=224  Identities=13%  Similarity=0.112  Sum_probs=128.2

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC-C
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-D   82 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d   82 (458)
                      +.++++++++++...++.|..||.+. +...                     .+. -.+....+++.++|+++++... +
T Consensus        37 ia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~---------------------~~~-~~~~p~gia~~~dG~l~vad~~~~   93 (306)
T 2p4o_A           37 LASAPDGTIFVTNHEVGEIVSITPDG-NQQI---------------------HAT-VEGKVSGLAFTSNGDLVATGWNAD   93 (306)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTC-CEEE---------------------EEE-CSSEEEEEEECTTSCEEEEEECTT
T ss_pred             EEECCCCCEEEEeCCCCeEEEECCCC-ceEE---------------------EEe-CCCCceeEEEcCCCcEEEEeccCC
Confidence            34566777666666778888888763 3221                     111 2346889999999997665533 2


Q ss_pred             -CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeee-------eccccccce
Q 012712           83 -RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETK-------LLGKHQGRA  153 (458)
Q Consensus        83 -~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~-------~~~~~~~~v  153 (458)
                       ..|..++..+++...............++..+  ++..+++-..++.|..+|...+.. +...       .........
T Consensus        94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A           94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             cceEEEEcCCCCeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence             24667777777653322111222334555555  666666665678888888754321 1100       001111233


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCC-CCcc--ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      +.+  +|++..++++-...+.|..+++.. ++..  ..+.           .......++++++ ++++++....+.|.+
T Consensus       172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-----------~~~~P~gi~vd~d-G~l~va~~~~~~V~~  237 (306)
T 2p4o_A          172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-----------EQTNIDDFAFDVE-GNLYGATHIYNSVVR  237 (306)
T ss_dssp             EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-----------ESCCCSSEEEBTT-CCEEEECBTTCCEEE
T ss_pred             CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-----------ccCCCCCeEECCC-CCEEEEeCCCCeEEE
Confidence            445  778766777777788999999875 3221  1111           1123567899997 567666666788999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC---CCCcEEEEec
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS---DQSELLVSYN  280 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~  280 (458)
                      +|.. ++....            .. ........++++|.   |+++.|...+
T Consensus       238 ~~~~-G~~~~~------------~~-~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          238 IAPD-RSTTII------------AQ-AEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             ECTT-CCEEEE------------EC-GGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             ECCC-CCEEEE------------ee-cccccCCceEEEEecccCCCCEEEEEC
Confidence            9875 321100            00 01112457899998   7866554443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.77  E-value=5.7e-05  Score=66.81  Aligned_cols=248  Identities=11%  Similarity=0.024  Sum_probs=146.2

Q ss_pred             EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeeccccc--ceeeeecccccc
Q 012712           75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERG--GVETKLLGKHQG  151 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~  151 (458)
                      +|+.+. ...|+..+++........  .....+..++|.+  ....| ++-...+.|..+++....  ......+.....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            444443 367888898866543333  3456788999998  55544 454557888888876522  111111332344


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-CCeEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DEYTRL  230 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i  230 (458)
                      ....+++.+.+.+++++-...+.|.+.++........+..          .......++++|.++.++++-.. .+.|..
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----------~~~~P~~iavdp~~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----------SSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC----------CCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence            6778999986557777777788999999876543333321          11246899999975555555433 477888


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      .++.....               ..+....-.....|++++++..|..+.  .+.|..++++...               
T Consensus       230 ~~~dG~~~---------------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~---------------  279 (400)
T 3p5b_L          230 GGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---------------  279 (400)
T ss_dssp             EETTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---------------
T ss_pred             EeCCCCcc---------------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc---------------
Confidence            88765321               111122234678999998776665554  3468888876421               


Q ss_pred             ccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV  387 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  387 (458)
                                              .+.+ ..........+++. . .+.++.+-...+.|..+|..+|+.+..+......
T Consensus       280 ------------------------~~~~~~~~~~l~~P~gl~v-~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~  333 (400)
T 3p5b_L          280 ------------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS  333 (400)
T ss_dssp             ------------------------CEEEEECSSTTSSEEEEEE-E-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSC
T ss_pred             ------------------------cEEEEeCCCCCCCCEEEEE-e-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCC
Confidence                                    1111 11000001345555 2 3445556666788999998888877777644444


Q ss_pred             eeEEEe
Q 012712          388 VNCIEP  393 (458)
Q Consensus       388 v~~~~~  393 (458)
                      ...++.
T Consensus       334 p~~i~v  339 (400)
T 3p5b_L          334 PEDMVL  339 (400)
T ss_dssp             EEEEEE
T ss_pred             CceEEE
Confidence            555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.76  E-value=3.2e-05  Score=68.13  Aligned_cols=201  Identities=10%  Similarity=0.045  Sum_probs=122.6

Q ss_pred             CceEEEEEecCCCE-EEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           62 GCVNTVSFNTDGDI-LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        62 ~~v~~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      .....++|.+.+.. +++-...+.|..++.+.......+ .........+++.+. .+.++++-...+.|.+.++.....
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCce
Confidence            45789999975554 445556788999998766543322 222334567888861 345555666677888888764432


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEecCC-CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      ...  +.........++++|.+..++++-... +.|..+++.......... .         .......++++|+++.+.
T Consensus       194 ~~l--~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~---------~~~~PnGlavd~~~~~lY  261 (386)
T 3v65_B          194 KVL--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-T---------HLFWPNGLTIDYAGRRMY  261 (386)
T ss_dssp             EEE--ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S---------SCSCEEEEEEEGGGTEEE
T ss_pred             EEe--ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-C---------CCCCeeeEEEeCCCCEEE
Confidence            221  333335678999999775666666555 789888887543322221 0         122468999998766666


Q ss_pred             EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCC
Q 012712          220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG  292 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~  292 (458)
                      ++-...+.|..+|+.....               ..+..........+++ ..+.++++.. .+.|..++..++
T Consensus       262 ~aD~~~~~I~~~d~dG~~~---------------~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          262 WVDAKHHVIERANLDGSHR---------------KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EEETTTTEEEEECTTSCSC---------------EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEECCCCEEEEEeCCCCee---------------EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            6667778899999864321               1111112334567777 3444444444 446888875554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.73  E-value=5.3e-05  Score=65.73  Aligned_cols=220  Identities=10%  Similarity=-0.013  Sum_probs=130.0

Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      ..|+..++........  .. ....+..++|++.+..++++-...+.|..+++...........          ......
T Consensus        53 ~~I~~i~~~g~~~~~~--~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------~~~~p~  119 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLL--LN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------GLESPG  119 (349)
T ss_dssp             SCEEEECTTSCCEEEE--EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCC
T ss_pred             cceEEEeCCCCeeEEe--ec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----------CCCCcc
Confidence            4577777654433221  22 2345788999987657777777788999999887654332211          112356


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--C-CcE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D-EFI  284 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~-~~i  284 (458)
                      .+++++.+++++++-...+.|.+.++.....               ..+..........++++|.+..|....  . +.|
T Consensus       120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---------------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             EEEEecCCCeEEEEcCCCCeEEEEcCCCCce---------------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence            8888886567777777788999999865321               111222234568999998655444433  2 457


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cC
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SD  363 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~  363 (458)
                      ..++++...                                       ...+... .......+++ +|++..|+.+ ..
T Consensus       185 ~r~~~dG~~---------------------------------------~~~~~~~-~~~~PnGla~-d~~~~~lY~aD~~  223 (349)
T 3v64_C          185 EASSMDGSG---------------------------------------RRIIADT-HLFWPNGLTI-DYAGRRMYWVDAK  223 (349)
T ss_dssp             EEEETTSCS---------------------------------------CEESCCS-SCSCEEEEEE-ETTTTEEEEEETT
T ss_pred             EEEeCCCCC---------------------------------------cEEEEEC-CCCCcceEEE-eCCCCEEEEEECC
Confidence            777765421                                       1111110 1112578888 9866666554 45


Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                      .+.|..+++........+.........+++ ..+.++.+-...+.|...+..++
T Consensus       224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          224 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence            678999998543333333333345677777 34555555556677877774444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.70  E-value=1.7e-05  Score=64.40  Aligned_cols=217  Identities=13%  Similarity=0.118  Sum_probs=129.2

Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      .+.+-...+..++++|++..++++...++.|...|+. ++....+...         .......+++.++ +.++++.-.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------g~~D~EGIa~~~~-g~~~vs~E~   89 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------FVKDLETIEYIGD-NQFVISDER   89 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------SCSSEEEEEECST-TEEEEEETT
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------CCCChHHeEEeCC-CEEEEEECC
Confidence            4566667899999999876677777788999999988 7766655432         1124678888886 566666667


Q ss_pred             CCeEEEEecCCCccC---CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCC
Q 012712          225 DEYTRLYDIRKYKWD---GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPS  300 (458)
Q Consensus       225 dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~  300 (458)
                      ++.+.++++......   ....+         .......+.....++|+|.+..|.++. .+...+|..........+. 
T Consensus        90 ~~~l~~~~v~~~~~i~~~~~~~~---------~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~-  159 (255)
T 3qqz_A           90 DYAIYVISLTPNSEVKILKKIKI---------PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH-  159 (255)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEC---------CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE-
T ss_pred             CCcEEEEEcCCCCeeeeeeeecc---------ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee-
Confidence            788999988654321   11000         000112355689999999986665555 3444555554100000000 


Q ss_pred             CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEecCCeEEE
Q 012712          301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGELIR  379 (458)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~  379 (458)
                                                   ......+..........++++ +|. +++++.......+.++|. +++.+.
T Consensus       160 -----------------------------i~~~~~~~~~~~~~d~S~l~~-dp~tg~lliLS~~s~~L~~~d~-~g~~~~  208 (255)
T 3qqz_A          160 -----------------------------ISKDKALQRQFTLDDVSGAEF-NQQKNTLLVLSHESRALQEVTL-VGEVIG  208 (255)
T ss_dssp             -----------------------------EEECHHHHHTCCSSCCCEEEE-ETTTTEEEEEETTTTEEEEECT-TCCEEE
T ss_pred             -----------------------------eecchhhccccccCCceeEEE-cCCCCeEEEEECCCCeEEEEcC-CCCEEE
Confidence                                         000000000000012567777 664 556666677788999997 466666


Q ss_pred             EeecCC---------ceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          380 VIEADR---------HVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       380 ~~~~~~---------~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      .+.-..         .....|+|.++|++.++ ++.+.++.+..
T Consensus       209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          209 EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            553221         24688999999985554 67776666654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.69  E-value=5.2e-05  Score=64.66  Aligned_cols=247  Identities=15%  Similarity=0.080  Sum_probs=142.8

Q ss_pred             EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccceeeeeccccccce
Q 012712           75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA  153 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v  153 (458)
                      +|+.+. ...|+..+++.................++.|.+  . +.++.+-...+.|..+++......... +.......
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-~~~~l~~p   81 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVSGLLSP   81 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEE-EEECCSCC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEE-EcCCCCCc
Confidence            344433 467999998876421222112234567899988  5 445555556788998988665321111 22222356


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCeEEEEe
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYD  232 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d  232 (458)
                      ..+++.+.+..++++-...+.|.++++.......... .         .......++++|.++.++++-. ..+.|...+
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~---------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-Q---------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-S---------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-C---------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence            7789987665777777778899999987543322221 1         1224688999987555555442 357888888


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      +.....               ..+....-.....++++|++..|..+.  .+.|..++++...                 
T Consensus       152 ~dG~~~---------------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-----------------  199 (318)
T 3sov_A          152 MDGSSR---------------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-----------------  199 (318)
T ss_dssp             TTSCSC---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------
T ss_pred             cCCCCe---------------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-----------------
Confidence            764321               111111234568999999766555544  3478888876421                 


Q ss_pred             ccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN  389 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  389 (458)
                                            .+.+ .+...  ...++++ .. +.++.+-...+.|..++..+++....+......+.
T Consensus       200 ----------------------~~~~~~~~~~--~P~glav-~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~  253 (318)
T 3sov_A          200 ----------------------RQAVVKGSLP--HPFALTL-FE-DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM  253 (318)
T ss_dssp             ----------------------CEEEECSCCS--CEEEEEE-ET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCC
T ss_pred             ----------------------eEEEecCCCC--CceEEEE-eC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCc
Confidence                                  1111 11111  2456666 43 44555666678999999888877666654333344


Q ss_pred             EEEe
Q 012712          390 CIEP  393 (458)
Q Consensus       390 ~~~~  393 (458)
                      +++.
T Consensus       254 ~i~v  257 (318)
T 3sov_A          254 DIHA  257 (318)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            4443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.68  E-value=0.00039  Score=69.81  Aligned_cols=359  Identities=11%  Similarity=0.095  Sum_probs=168.8

Q ss_pred             CCceEEEEEecC------CCEEEEecC-CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           61 RGCVNTVSFNTD------GDILISGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        61 ~~~v~~~~~s~~------~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+.+.+....-+......++.+.......+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            567999999863      368999986 9999999998766554331122234445554432245678888889988666


Q ss_pred             ecc--cccceeeee-ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce-EEE
Q 012712          134 QIL--ERGGVETKL-LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAI  209 (458)
Q Consensus       134 ~~~--~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~  209 (458)
                      .+.  ++.....+. .-+ ..++.-..+...+..-+++++. ....++.-+ ++    +...+.       ....+ ...
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~~-~~----l~~s~l-------~~~~v~~~~  698 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD-RPTVIYSSN-HK----LVFSNV-------NLKEVNYMC  698 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS-SCEEEEESS-SS----EEEEEB-------SSSCCCEEE
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC-CCEEEEEcC-Cc----eEEecc-------ChHHhceEe
Confidence            554  333222211 112 2344444444444333444443 333344322 22    111111       00012 233


Q ss_pred             EECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712          210 AIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT  288 (458)
Q Consensus       210 ~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~  288 (458)
                      .|+... ++-++..+ ++.++|..+...+..            ....+  .-...+..++++|+.+.++.+.... ..++
T Consensus       699 ~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~------------~~~~i--pL~~Tprri~y~~~~~~~~v~~~~~-~~~~  762 (1158)
T 3ei3_A          699 PLNSDGYPDSLALAN-NSTLTIGTIDEIQKL------------HIRTV--PLYESPRKICYQEVSQCFGVLSSRI-EVQD  762 (1158)
T ss_dssp             EECCSSSTTEEEEEC-SSCEEEEEECCSSSE------------EEEEE--ECSSEEEEEEEEGGGTEEEEEEEEE-EEEC
T ss_pred             ccCcccCCCcEEEEc-CCceEEEEecccCCe------------eEEEE--eCCCCceEEEEcCCCCEEEEEEEec-cccc
Confidence            343321 22344333 445999887543210            00111  1134678899999877665543221 1111


Q ss_pred             ccCCCCCCCCC----------CCC----ccccccccccCC--CCccccCCCCCCcccccCce--eecCccceeeeeEEEE
Q 012712          289 QDMGLGPNPPP----------SSP----VSTRSEASEMGS--DHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNF  350 (458)
Q Consensus       289 ~~~~~~~~~~~----------~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~  350 (458)
                      ...........          ..+    .........+.+  ....+..   -++.....+.  .+...+....+..+.|
T Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~l---idp~t~~~i~~~~l~~nE~~~sv~~v~~  839 (1158)
T 3ei3_A          763 TSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLI---IDQHTFEVLHAHQFLQNEYALSLVSCKL  839 (1158)
T ss_dssp             SSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEE---EETTTCCEEEEEECCTTEEEEEEEEECC
T ss_pred             cccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEE---EeCCCCeEEEEEeCCCCcceEEEEEEEE
Confidence            11000000000          000    000000000000  0000000   0001111111  2223333222333333


Q ss_pred             ecCC-CcEEEEec----------CCCeEEEEEecCCeEEEEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          351 FGPK-CEYVVSGS----------DCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       351 ~s~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                       ..+ ..+++.|+          ..|.|++|++..++.....+ ...++|++++-- +|++||..  .++|++|++...+
T Consensus       840 -~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~  915 (1158)
T 3ei3_A          840 -GKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEK  915 (1158)
T ss_dssp             -TTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTS
T ss_pred             -ccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCc
Confidence             332 46888775          34899999997554332221 235678887643 45555443  4799999998654


Q ss_pred             cccc-ccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          419 RATL-PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       419 ~~~~-~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      .+.. ..+...+..+.....+.+++.|..-.+|.+..|-
T Consensus       916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~  954 (1158)
T 3ei3_A          916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK  954 (1158)
T ss_dssp             CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred             eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence            3331 1111113333444467888888888888888774

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.63  E-value=0.00037  Score=65.40  Aligned_cols=348  Identities=9%  Similarity=0.023  Sum_probs=187.1

Q ss_pred             CceEEEEEecCCCEEE-EecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712           62 GCVNTVSFNTDGDILI-SGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG  140 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  140 (458)
                      ..+..|+|++.+..|. +-..++.|..++++.......+ .........+++.+. .+++.++-...+.|.+.++.....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWL-GKNLYWADTGTNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSTTC
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeC-CCEEEEEECCCCEEEEEecCCCcE
Confidence            4577999998665554 5556789999998755433222 222345678888761 355556666678899998865432


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEe-cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      ...  +...-.....+++.|....++++- +..+.|...++..........           .......++++++++.+.
T Consensus       115 ~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-----------~~~~P~GlalD~~~~~LY  181 (628)
T 4a0p_A          115 QVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-----------NVGRANGLTIDYAKRRLY  181 (628)
T ss_dssp             EEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----------SCSSEEEEEEETTTTEEE
T ss_pred             EEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-----------CCCCcceEEEccccCEEE
Confidence            221  223335568999999654665554 235688888887554333221           122468999999755666


Q ss_pred             EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCC
Q 012712          220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~  298 (458)
                      ++-...+.|..+|+.....                ............+++.. +.++++-. .+.|...|..++.....+
T Consensus       182 ~aD~~~~~I~~~d~dG~~~----------------~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          182 WTDLDTNLIESSNMLGLNR----------------EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             EEETTTTEEEEEETTSCSC----------------EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEECCCCEEEEEcCCCCce----------------EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            6666778899999865431                11111122345677655 34444443 446777776555422111


Q ss_pred             CCC---Cccccc-----------------------------cccccCCCCccccCCCCC--Cc------ccccCce----
Q 012712          299 PSS---PVSTRS-----------------------------EASEMGSDHTSAASPSTA--NT------DVRIAPQ----  334 (458)
Q Consensus       299 ~~~---~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~--~~------~~~~~~~----  334 (458)
                      ...   +.....                             ...+..+.+..+......  ..      .....+.    
T Consensus       245 ~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l  324 (628)
T 4a0p_A          245 QGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVI  324 (628)
T ss_dssp             ECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECC
T ss_pred             ecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEec
Confidence            100   000000                             000001111111000000  00      0000000    


Q ss_pred             --------eecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEEecCCeEEEEeec------CCceeeEEEecCCCCe
Q 012712          335 --------VYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEA------DRHVVNCIEPHPHSTV  399 (458)
Q Consensus       335 --------~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~~~~  399 (458)
                              .+..+ ....+.+++| ++.++.|+.+ ...+.|+.+++........+..      ....+..|++...++.
T Consensus       325 ~~~~~~~~~l~~~-~~~~~~~ld~-d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~n  402 (628)
T 4a0p_A          325 DEQQSPDIILPIH-SLRNVRAIDY-DPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY  402 (628)
T ss_dssp             CTTCCCCEECCCT-TCSCEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTE
T ss_pred             ccccCceEEEEeh-hcCCceEEEE-ecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCe
Confidence                    00001 1112667888 7765555544 4467888888754332333322      2235789999988665


Q ss_pred             EE-EeecCCcEEEecCCccccccc-ccccccEEEEEEec-CCcEEEe
Q 012712          400 LA-SSGIESDIKILTPNAADRATL-PTNIEQVCFSIYSA-DYWWSKS  443 (458)
Q Consensus       400 l~-s~~~d~~i~iw~~~~~~~~~~-~~~~~~v~~~~~s~-d~~~l~s  443 (458)
                      |. +-+..+.|.+.++.......+ ........++++.| .|....+
T Consensus       403 LY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~t  449 (628)
T 4a0p_A          403 IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFT  449 (628)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEe
Confidence            54 555678899998875533332 23445688999999 4544444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.62  E-value=1.7e-06  Score=83.46  Aligned_cols=192  Identities=11%  Similarity=0.037  Sum_probs=112.0

Q ss_pred             CCC-CCCCeEEEeeC-C----CcEEEEEcccc-ccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEE
Q 012712            5 SNN-NNNKRARTSVD-K----ALVDVWLRELG-QLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI   77 (458)
Q Consensus         5 ~~~-~~~~~l~~~~~-d----~~i~iw~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   77 (458)
                      .+| |||++||-+.+ +    ..|+++|+.+| +.+..                    .+..   ....++|+|||+.|+
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------~~~~---~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------KVSG---TNGEIVWGPDHTSLF  236 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------CEEE---ECSCCEECSSTTEEE
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------cccC---ceeeEEEecCCCEEE
Confidence            468 99998886543 2    35999999988 64321                    1111   134688999998888


Q ss_pred             EecCC-----CeEEEEECCCccee--eeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeeccccccee--eee
Q 012712           78 SGSDD-----RRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVE--TKL  145 (458)
Q Consensus        78 s~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~--~~~  145 (458)
                      ....|     ..|.++++.++...  ..+..........+.|+|  |+++|+..+.   ...|.++|+.++....  ...
T Consensus       237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l  314 (751)
T 2xe4_A          237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV  314 (751)
T ss_dssp             EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES
T ss_pred             EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEe
Confidence            76654     36888888776422  222112334466889999  9998886553   3468888887653211  222


Q ss_pred             ccccccceEEEEEcCCCCeEEEEecCC----CeEEEEeCCCC-Cccc-eeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712          146 LGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTG-AATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF  219 (458)
Q Consensus       146 ~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  219 (458)
                      ..........+.|+..+ .+++....+    ..|..+|+.++ +... .+...         ....+..+.+.  ++.++
T Consensus       315 ~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~---------~~~~l~~~~~~--~~~lv  382 (751)
T 2xe4_A          315 RPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS---------EDVFMESIAVR--SNYLV  382 (751)
T ss_dssp             SCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC---------SSEEEEEEEEC--SSEEE
T ss_pred             ecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC---------CCcEEEEEEEE--CCEEE
Confidence            33344455556655444 565655443    36777777653 2122 22110         11134556665  35677


Q ss_pred             EEecCCCeEE--EEec
Q 012712          220 AVAGSDEYTR--LYDI  233 (458)
Q Consensus       220 ~~~~~dg~i~--i~d~  233 (458)
                      ++...++..+  ++|+
T Consensus       383 ~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          383 VAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEETTEEEEEEEEC
T ss_pred             EEEEeCCEEEEEEEec
Confidence            7777788654  4554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.62  E-value=0.00017  Score=61.56  Aligned_cols=230  Identities=10%  Similarity=0.012  Sum_probs=133.6

Q ss_pred             eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEEC
Q 012712           12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDW   90 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~   90 (458)
                      +|+.+. ...|+..|+.+++...                     .+. .......++|++++..| ++-...+.|..+++
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~---------------------~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~   59 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTS---------------------LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQL   59 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEE---------------------EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEEC-CCeEEEEECCCcceEe---------------------hhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEEC
Confidence            344444 3458888888654321                     122 33457899999866544 45556689999998


Q ss_pred             CC---cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEE
Q 012712           91 KT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY  167 (458)
Q Consensus        91 ~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  167 (458)
                      ..   +.....+....-.....+++.+. ++.+.++-...+.|.+.+.........  +.........++++|.+..+++
T Consensus        60 ~g~~~~~~~~~~~~~~~~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~iavdp~~g~ly~  136 (316)
T 1ijq_A           60 DRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHGFMYW  136 (316)
T ss_dssp             --------CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTTTEEEE
T ss_pred             CCCCCCcccEEEEeCCCCCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEE--EECCCCCcceEEeCCCCCEEEE
Confidence            75   12222222222245678888861 445555656778999999864332221  2223346789999997656666


Q ss_pred             EecCC-CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCC
Q 012712          168 TCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ  246 (458)
Q Consensus       168 s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  246 (458)
                      +.... +.|...++.... ...+...         .......++++|+++.++++-...+.|..+|+.....        
T Consensus       137 ~d~~~~~~I~~~~~dG~~-~~~~~~~---------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~--------  198 (316)
T 1ijq_A          137 TDWGTPAKIKKGGLNGVD-IYSLVTE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------  198 (316)
T ss_dssp             EECSSSCEEEEEETTSCC-EEEEECS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------
T ss_pred             EccCCCCeEEEEcCCCCC-eEEEEEC---------CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce--------
Confidence            65443 788888876433 2222111         1124689999987666666666778999999874321        


Q ss_pred             CCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712          247 PADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL  293 (458)
Q Consensus       247 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~  293 (458)
                             ..+..  ........+++.. +.++++.. .+.|..++..++.
T Consensus       199 -------~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          199 -------KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             -------EEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             -------EEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCc
Confidence                   01111  1123456777753 55555544 4578888876654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.59  E-value=8.7e-05  Score=66.31  Aligned_cols=212  Identities=15%  Similarity=0.111  Sum_probs=114.9

Q ss_pred             ceEEEEEecC--CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---C-cEEEeecc
Q 012712           63 CVNTVSFNTD--GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G-QVRHAQIL  136 (458)
Q Consensus        63 ~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g-~i~vw~~~  136 (458)
                      .-..|+|+|+  ...|..+...+.|+.+|..++......  ........+++++  +++++++....   . .+...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~--dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTL--NGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECT--TCCEEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECC--CCCEEEEcCCCCcccceEEEEECC
Confidence            3568999985  344555544488999998777654333  3445688999999  99855544321   1 12223322


Q ss_pred             cccceeeeeccccccceEEEEEcC-CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      . .......+. .......++++| ++ .++++-..++.|+.+|..++.....+....        .......++|+|++
T Consensus       216 ~-~~~~~~~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~--------~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          216 S-GFTERLSLC-NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMD--------TKGSNFHIVWHPTG  284 (433)
T ss_dssp             G-TTCCEEEEE-ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECS--------CCSSCEEEEECTTS
T ss_pred             C-Ceecccccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccC--------CCCCcccEEEeCCC
Confidence            1 111001111 223456788999 55 666666677899999988776522221110        01123469999984


Q ss_pred             CcEEEEecCCCeEEEEecCC--CccCCCccC-CC-CCCCcCCCccccccccceeEEEe---------CCCCcEEEEecC-
Q 012712          216 ANLFAVAGSDEYTRLYDIRK--YKWDGSTDF-GQ-PADYFCPPNLIGDEQVGITGLAF---------SDQSELLVSYND-  281 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~l~~~~~-  281 (458)
                      ..++++-...+.|+.++...  ........+ +. ....+.........-.....+++         .++|.++++-.. 
T Consensus       285 ~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n  364 (433)
T 4hw6_A          285 DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS  364 (433)
T ss_dssp             SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence            33555666678899988653  221100000 00 00000000000011234667888         777777776654 


Q ss_pred             CcEEEEEc
Q 012712          282 EFIYLFTQ  289 (458)
Q Consensus       282 ~~i~i~~~  289 (458)
                      +.|+.++.
T Consensus       365 ~~I~~~~~  372 (433)
T 4hw6_A          365 HTVRVLTP  372 (433)
T ss_dssp             TEEEEECT
T ss_pred             CEEEEECC
Confidence            46888874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.59  E-value=0.00017  Score=61.49  Aligned_cols=202  Identities=8%  Similarity=0.022  Sum_probs=121.3

Q ss_pred             ceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712           63 CVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV  141 (458)
Q Consensus        63 ~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  141 (458)
                      ...+++|.+.+ .++.+-...+.|..++.+.+.....+....-.....+++.+. ++.++++-...+.|.++++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEE
Confidence            46689999854 455555667889999987664222221222245667888761 4555566666788999998654322


Q ss_pred             eeeeccccccceEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712          142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                      ..  ..........+++.|.+..++++-. ..+.|...++.......... .         .-.....++++|+++.+.+
T Consensus       115 ~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~---------~l~~Pnglavd~~~~~lY~  182 (318)
T 3sov_A          115 VL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-S---------EIYWPNGLTLDYEEQKLYW  182 (318)
T ss_dssp             EE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-S---------SCSCEEEEEEETTTTEEEE
T ss_pred             EE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-C---------CCCCccEEEEeccCCEEEE
Confidence            21  2233455689999987646555542 35788888876433222111 1         1124689999997666666


Q ss_pred             EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712          221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL  293 (458)
Q Consensus       221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~  293 (458)
                      +=...+.|..+|+.....               ..+..........+++..+ .++.+-. .+.|..++..++.
T Consensus       183 aD~~~~~I~~~d~dG~~~---------------~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          183 ADAKLNFIHKSNLDGTNR---------------QAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EETTTTEEEEEETTSCSC---------------EEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCC
T ss_pred             EECCCCEEEEEcCCCCce---------------EEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCC
Confidence            666778899999864321               1111112334567777543 3444433 4578888886654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.58  E-value=0.00048  Score=64.55  Aligned_cols=357  Identities=7%  Similarity=-0.025  Sum_probs=178.8

Q ss_pred             CCceEEEEEecCCCEEEEe-cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeecccc
Q 012712           61 RGCVNTVSFNTDGDILISG-SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILER  138 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~  138 (458)
                      -+....|+|++.+..|..+ ...+.|..++++.......+....-.....+++.+  .+. ++++-...+.|.+.++...
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~--~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW--LGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe--cCCEEEEEeCCCCEEEEEECCCC
Confidence            3457799999866655544 44678999998755322222223335678899987  554 4555556789999998654


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      .....  ..........|++.|.+..++++-- ..+.|...++.......... .         .......++++++++.
T Consensus       117 ~~~~l--~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~---------~~~~P~Glald~~~~~  184 (619)
T 3s94_A          117 LRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-S---------EIYWPNGLTLDYEEQK  184 (619)
T ss_dssp             SCEEE--ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S---------SCSSEEEEEEETTTTE
T ss_pred             CEEEE--EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-C---------CCCCCcEEEEEccCCE
Confidence            32221  2233445778999997646666542 24677777776443322221 1         1124689999997566


Q ss_pred             EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCC
Q 012712          218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPN  296 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~  296 (458)
                      +.++-...+.|..+|+.......               +..........+++..+ .+.++-. .+.|...|..++....
T Consensus       185 LY~aD~~~~~I~~~~~dG~~~~~---------------~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          185 LYWADAKLNFIHKSNLDGTNRQA---------------VVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             EEEEETTTCCEEEESSSCCEEC------------------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             EEEEeCCCCeEEEecCCCCccEE---------------EEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence            66666677889999886543211               11111122346677665 3334433 4579999988776443


Q ss_pred             CCCCC---CccccccccccCCCCccccCCCCC-CcccccCceeecCccceeeeeEEEE----ecCC--------CcEEEE
Q 012712          297 PPPSS---PVSTRSEASEMGSDHTSAASPSTA-NTDVRIAPQVYKGHRNCVTVKGVNF----FGPK--------CEYVVS  360 (458)
Q Consensus       297 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~----~s~~--------~~~l~~  360 (458)
                      .+...   +..........-|.+    ..... ....-..+.........  ..|.+-    ..+|        ..+|+.
T Consensus       249 ~i~~~~~~p~~i~v~~~~~qp~~----~n~C~~~ng~Cs~lCl~~~~~~~--~~C~C~~g~~l~~d~~~C~~~~~~~Ll~  322 (619)
T 3s94_A          249 EIHSDIFSPMDIHAFSQQRQPNA----TNPCGIDNGGCSHLCLMSPVKPF--YQCACPTGVKLLENGKTCKDGATELLLL  322 (619)
T ss_dssp             ECCSCCCCCSEEEECCGGGSCCC----CCTTTTTGGGCSSEEEECSSTTS--EEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred             EEecCCCCCcEEEEEccccCCCc----cccccCCCCcccceEECCCCCCC--ceEeCCchheecccCcccCCCCceEEEE
Confidence            33211   111111000000000    00000 00000000000000000  111110    0111        224444


Q ss_pred             ecCCCeEEEEEecCCeEE-EEee-cCCceeeEEEecCCCCeEEEe-ecCCcEEEecCCccccccc-ccccccEEEEEEec
Q 012712          361 GSDCGRIFIWKKKGGELI-RVIE-ADRHVVNCIEPHPHSTVLASS-GIESDIKILTPNAADRATL-PTNIEQVCFSIYSA  436 (458)
Q Consensus       361 ~~~dg~i~iwd~~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iw~~~~~~~~~~-~~~~~~v~~~~~s~  436 (458)
                      +. .+.|+..++...... ..+. ..-..+.+++|.+.+..|..+ ...+.|+.+++.+.....+ .........+++.+
T Consensus       323 ~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~  401 (619)
T 3s94_A          323 AR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDW  401 (619)
T ss_dssp             EE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred             Ec-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEec
Confidence            33 456777777554321 1111 112346789999865555444 4578899898876543322 22334567888887


Q ss_pred             CCc-EEEeeecCCceEEEE
Q 012712          437 DYW-WSKSQNFSCSILLFE  454 (458)
Q Consensus       437 d~~-~l~s~~~d~~i~~w~  454 (458)
                      .+. +..+-+..+.|.+.+
T Consensus       402 ~~~~lY~tD~~~~~I~v~~  420 (619)
T 3s94_A          402 VARNLYWTDTGTDRIEVTR  420 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEE
T ss_pred             ccCcEEEEeCCCCcEEEEe
Confidence            554 444444455565543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=8.9e-06  Score=78.53  Aligned_cols=193  Identities=9%  Similarity=0.068  Sum_probs=105.9

Q ss_pred             ceEEEEEC-CCCCcEEEEe-cCCC----eEEEEecCCC-ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712          205 NLNAIAID-PRNANLFAVA-GSDE----YTRLYDIRKY-KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV  277 (458)
Q Consensus       205 ~v~~~~~~-p~~~~~l~~~-~~dg----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (458)
                      .+...+|| || +++|+.+ ..+|    .|+++|+.++ +...             .. .   ......++|+|||+.|+
T Consensus       175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------~~-~---~~~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------DK-V---SGTNGEIVWGPDHTSLF  236 (751)
T ss_dssp             EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------------CC-E---EEECSCCEECSSTTEEE
T ss_pred             EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------------cc-c---cCceeeEEEecCCCEEE
Confidence            46788999 98 5655543 3333    4999999887 4210             00 0   11245789999998777


Q ss_pred             EecCC------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712          278 SYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF  351 (458)
Q Consensus       278 ~~~~~------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  351 (458)
                      ....+      .|+++++.++..                                    .....+...... ....+.| 
T Consensus       237 y~~~d~~~~~~~v~~~~lgt~~~------------------------------------~~~lv~~~~~~~-~~~~~~~-  278 (751)
T 2xe4_A          237 YVTKDETLRENKVWRHVMGKLQS------------------------------------EDVCLYEEHNPL-FSAFMYK-  278 (751)
T ss_dssp             EEEECTTCCEEEEEEEETTSCGG------------------------------------GCEEEEECCCTT-CEEEEEE-
T ss_pred             EEEECCCCCCCEEEEEECCCCch------------------------------------hcEEEEecCCCc-eEEEEEE-
Confidence            65521      366777654210                                    011122111111 2456777 


Q ss_pred             cCCCcEEEEecC---CCeEEEEEecCCe-EE--EEee-cCCceeeEEEecCCCCeEEEeecC--C--cEEEecCCc-ccc
Q 012712          352 GPKCEYVVSGSD---CGRIFIWKKKGGE-LI--RVIE-ADRHVVNCIEPHPHSTVLASSGIE--S--DIKILTPNA-ADR  419 (458)
Q Consensus       352 s~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~~d--~--~i~iw~~~~-~~~  419 (458)
                      +|||++|+..+.   ...|+++|+.++. ..  ..+. ...+...++.|+..+.+++....+  +  .|..+++.+ ++.
T Consensus       279 SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~  358 (751)
T 2xe4_A          279 AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW  358 (751)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc
Confidence            999999886552   3578889987652 22  3333 333445556555444444554443  3  566666664 233


Q ss_pred             cc-ccccccc--EEEEEEecCCcEEEeeecCCceEEEE
Q 012712          420 AT-LPTNIEQ--VCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       420 ~~-~~~~~~~--v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      .. +..+...  +..+.+. .+.++++...++..+||-
T Consensus       359 ~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          359 SHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             eeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            34 4444443  4444443 234556677777655553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.56  E-value=0.0002  Score=68.74  Aligned_cols=188  Identities=13%  Similarity=0.056  Sum_probs=112.3

Q ss_pred             EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccc
Q 012712           75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGR  152 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~  152 (458)
                      +|+.+.. ..|+..++.........  .....+..++|.+. ++.++++-...+.|+.+++.....  .....+......
T Consensus       397 ~Ll~an~-~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~  472 (791)
T 3m0c_C          397 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  472 (791)
T ss_dssp             EEEEECB-SSEEEECTTSCCCEEEE--CSCSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             ccccccc-cceeEeeccCCcceeee--cCCCceEEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence            4444333 45777787765543332  33456789999871 344455555667888888865311  111123323455


Q ss_pred             eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEEEE
Q 012712          153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLY  231 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~  231 (458)
                      ...|++.+.+.+++++-...+.|.+.++........+. .         .......|+++|.++.++++-... +.|...
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~---------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-E---------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-C---------TTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-C---------CCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            67899998876777787888999999987554332222 1         112478999999755555554333 678888


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccC
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDM  291 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~  291 (458)
                      ++.....               ..+....-.....|++++.+..|..+.  .+.|..+++..
T Consensus       543 ~~dG~~~---------------~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          543 GLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             ETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ecCCCce---------------EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            8765331               112222234678999997766555544  34688888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=7.6e-05  Score=66.73  Aligned_cols=234  Identities=12%  Similarity=0.102  Sum_probs=130.3

Q ss_pred             ceEEEEEcC-CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-CC---
Q 012712          152 RAHKLAIEP-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-DE---  226 (458)
Q Consensus       152 ~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg---  226 (458)
                      ....++++| ++.. |+.+...+.|+.+|+..+.......           .......++++++ +++|+++.. ++   
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~-----------~~~~P~~ia~d~~-G~~lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS-----------GLSKVRTICWTHE-ADSMIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC-----------CCSCEEEEEECTT-SSEEEEEECCSCTTS
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec-----------CCCCcceEEEeCC-CCEEEEEeCCCCccc
Confidence            457789998 3424 5555444889999988765433322           1224789999998 564444443 22   


Q ss_pred             -eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCc
Q 012712          227 -YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV  303 (458)
Q Consensus       227 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~  303 (458)
                       .+..++. .+.....             .... .......++++| +|.++++-. .+.|+.++......         
T Consensus       205 ~~v~~~~~-~g~~~~~-------------~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~---------  260 (430)
T 3tc9_A          205 PNNYILTR-ESGFKVI-------------TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET---------  260 (430)
T ss_dssp             EEEEEEEG-GGTSCSE-------------EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE---------
T ss_pred             ceEEEEeC-CCceeee-------------eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE---------
Confidence             2333443 2221100             0011 123467888999 677666654 45799999765210         


Q ss_pred             cccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecC--CeE--E
Q 012712          304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKG--GEL--I  378 (458)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~--~~~--~  378 (458)
                                                 ..........   ....+++ +|+|++|+ +-...+.|+.++...  ++.  +
T Consensus       261 ---------------------------~~~~~~~~~~---~P~gia~-~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~  309 (430)
T 3tc9_A          261 ---------------------------TPLFTIQDSG---WEFHIQF-HPSGNYAYIVVVNQHYILRSDYDWKTKRLTTP  309 (430)
T ss_dssp             ---------------------------EEEEECSSSS---CCEEEEE-CTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred             ---------------------------EEEEEcCCCC---cceeEEE-cCCCCEEEEEECCCCEEEEEeCCcccccccce
Confidence                                       0011111111   2467888 99999555 445678999988753  222  2


Q ss_pred             EEeecC------C---------ceee-EEEec--------CCCCeEEEeecCCcEEEecCCcccccccccc---------
Q 012712          379 RVIEAD------R---------HVVN-CIEPH--------PHSTVLASSGIESDIKILTPNAADRATLPTN---------  425 (458)
Q Consensus       379 ~~~~~~------~---------~~v~-~~~~s--------~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---------  425 (458)
                      ..+.+.      .         .... .++..        ++|.++++=...+.|+.++.. +....+.+.         
T Consensus       310 ~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v~~~~g~g~~~~~G~~  388 (430)
T 3tc9_A          310 YIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRVTTFAGRGSNGTSGYN  388 (430)
T ss_dssp             EEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEEEEEEECCTTSSSSCB
T ss_pred             EEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-CcEEEEEeCCCCCCCccc
Confidence            222211      0         1123 45553        346666665667889998854 333322211         


Q ss_pred             ---------cccEEEEEEecC-CcEEEeeecCCceEEEE
Q 012712          426 ---------IEQVCFSIYSAD-YWWSKSQNFSCSILLFE  454 (458)
Q Consensus       426 ---------~~~v~~~~~s~d-~~~l~s~~~d~~i~~w~  454 (458)
                               ......++++|+ |.++++-.....|+.++
T Consensus       389 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          389 DGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence                     124789999995 66666655666777765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.54  E-value=0.00017  Score=64.51  Aligned_cols=157  Identities=17%  Similarity=0.159  Sum_probs=95.4

Q ss_pred             ceEEEEEec-CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CC----cEEEeecc
Q 012712           63 CVNTVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DG----QVRHAQIL  136 (458)
Q Consensus        63 ~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg----~i~vw~~~  136 (458)
                      ....|+++| ++..|..+...+.|+.+|++.+......  ........++|++  +++.|+.+.. ++    .+.+.+ .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~-~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTH--EADSMIITNDQNNNDRPNNYILT-R  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECT--TSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeC--CCCEEEEEeCCCCcccceEEEEe-C
Confidence            356889998 3545555554488999998876543332  3445688999999  9986665554 22    233333 2


Q ss_pred             cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      .+.......+. .......++++|++..++++-..++.|..++...+.........         .......++|+|+ +
T Consensus       213 ~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---------~~~~P~gia~~pd-G  281 (430)
T 3tc9_A          213 ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ---------DSGWEFHIQFHPS-G  281 (430)
T ss_dssp             GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS---------SSSCCEEEEECTT-S
T ss_pred             CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC---------CCCcceeEEEcCC-C
Confidence            33222111122 12345678899943367777777889999998866432222211         1123578999998 4


Q ss_pred             c-EEEEecCCCeEEEEecCC
Q 012712          217 N-LFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       217 ~-~l~~~~~dg~i~i~d~~~  235 (458)
                      + ++++-...+.|..++...
T Consensus       282 ~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          282 NYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SEEEEEETTTTEEEEEEEET
T ss_pred             CEEEEEECCCCEEEEEeCCc
Confidence            5 555556677888887653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.53  E-value=6.9e-05  Score=66.97  Aligned_cols=236  Identities=9%  Similarity=0.055  Sum_probs=133.1

Q ss_pred             ceEEEEEcCC--CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC---C
Q 012712          152 RAHKLAIEPG--SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---E  226 (458)
Q Consensus       152 ~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g  226 (458)
                      ....++++|+  +..+ +.+...+.|+.+|+.++.......           ....+..++++++ ++++++...+   .
T Consensus       140 ~P~gvavd~~s~~g~L-yv~D~~~~I~~id~~~g~v~~~~~-----------~~~~P~giavd~d-G~lyVad~~~~~~~  206 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDL-YWVGQRDAFRHVDFVNQYVDIKTT-----------NIGQCADVNFTLN-GDMVVVDDQSSDTN  206 (433)
T ss_dssp             CCCEEEECTTTTTCEE-EEECBTSCEEEEETTTTEEEEECC-----------CCSCEEEEEECTT-CCEEEEECCSCTTS
T ss_pred             CCceEEEccccCCCEE-EEEeCCCCEEEEECCCCEEEEeec-----------CCCCccEEEECCC-CCEEEEcCCCCccc
Confidence            4568999995  3254 444444889999998776543332           1224789999998 4544443321   1


Q ss_pred             -eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCc
Q 012712          227 -YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV  303 (458)
Q Consensus       227 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~  303 (458)
                       .+..++.... ...             ..... .......++++| +|.+.++-. .+.|+.++..++...        
T Consensus       207 ~gv~~~~~~~~-~~~-------------~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~--------  263 (433)
T 4hw6_A          207 TGIYLFTRASG-FTE-------------RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT--------  263 (433)
T ss_dssp             EEEEEECGGGT-TCC-------------EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE--------
T ss_pred             ceEEEEECCCC-eec-------------ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE--------
Confidence             1333332211 000             00111 123456788999 676665554 446888887643110        


Q ss_pred             cccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-ecCCCeEEEEEec--CCeE--E
Q 012712          304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKK--GGEL--I  378 (458)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-~~~dg~i~iwd~~--~~~~--~  378 (458)
                                                   ...+...... .-..+++ +|+|++|+. -...+.|+.++..  ++..  .
T Consensus       264 -----------------------------~~~~~~~~~~-~~~~ia~-dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~  312 (433)
T 4hw6_A          264 -----------------------------EEEVMMDTKG-SNFHIVW-HPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP  312 (433)
T ss_dssp             -----------------------------EEEEECSCCS-SCEEEEE-CTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC
T ss_pred             -----------------------------EEEeccCCCC-CcccEEE-eCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE
Confidence                                         0001000011 1235887 999995554 4556899998865  2321  1


Q ss_pred             EEeecC---------------CceeeEEEe---------cCCCCeEEEeecCCcEEEecCCccccccccc----------
Q 012712          379 RVIEAD---------------RHVVNCIEP---------HPHSTVLASSGIESDIKILTPNAADRATLPT----------  424 (458)
Q Consensus       379 ~~~~~~---------------~~~v~~~~~---------s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----------  424 (458)
                      ..+.+.               -.....+++         .++|.++++-...+.|+.++.. +....+.+          
T Consensus       313 ~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~  391 (433)
T 4hw6_A          313 YIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYV  391 (433)
T ss_dssp             EEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCB
T ss_pred             EEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccC
Confidence            222221               123567899         7778777777777899999864 33322221          


Q ss_pred             --------ccccEEEEEEe-cCCcEEEeeecCCceEEEEE
Q 012712          425 --------NIEQVCFSIYS-ADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       425 --------~~~~v~~~~~s-~d~~~l~s~~~d~~i~~w~~  455 (458)
                              .......++++ ++|.+.++=.....|+.++.
T Consensus       392 dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          392 DGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             CEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence                    11237789999 67777766666677877653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.51  E-value=0.00039  Score=59.72  Aligned_cols=277  Identities=9%  Similarity=0.043  Sum_probs=143.7

Q ss_pred             CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc
Q 012712           61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE  137 (458)
Q Consensus        61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  137 (458)
                      ...+.+|.|.+++..++++ .++.| +...+.++.-....   ......+.++.|.+   +..++ ++..+.|..  ...
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~---~~~~~-~g~~g~i~~--S~D  106 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG---NEGWI-VGEPPIMLH--TTD  106 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET---TEEEE-EEETTEEEE--ESS
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC---CeEEE-EECCCeEEE--ECC
Confidence            4579999998878777754 56755 33444443212111   11245788999875   34444 445564433  323


Q ss_pred             -ccceeeeec-cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          138 -RGGVETKLL-GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       138 -~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                       ++.-..... ..+...+..+.+.+++ .+++.+ .++.|.. ....++.-......         ....+..+++.|+ 
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~---------~~~~~~~~~~~~~-  173 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQE---------AIGVMRNLNRSPS-  173 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECS---------CCCCEEEEEECTT-
T ss_pred             CCCCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecC---------CCcceEEEEEcCC-
Confidence             222221111 1233456778777666 555554 4554422 12223322222111         1225788999996 


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP  295 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~  295 (458)
                      +.+++++...+..+-.|-.....               ..........+..+++.+++++++.+.++.+++.+.+.+..-
T Consensus       174 ~~~~~~g~~G~~~~S~d~gG~tW---------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          174 GEYVAVSSRGSFYSTWEPGQTAW---------------EPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             SCEEEEETTSSEEEEECTTCSSC---------------EEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred             CcEEEEECCCcEEEEeCCCCCce---------------eECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence            56666654433333333211110               001112245678899999998888777777766542211100


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                         .....- .....  .+.++.+ .+++..++++. +|.+ ++....
T Consensus       239 -----------------------------------~~~~~~~~~~~~--~~~~v~~-~~~~~~~~~g~-~g~i-~~S~Dg  278 (327)
T 2xbg_A          239 -----------------------------------GELLSPLRRNSV--GFLDLAY-RTPNEVWLAGG-AGAL-LCSQDG  278 (327)
T ss_dssp             -----------------------------------CCCBCTTSSCCS--CEEEEEE-SSSSCEEEEES-TTCE-EEESST
T ss_pred             -----------------------------------EeccCCcccCCc--ceEEEEe-cCCCEEEEEeC-CCeE-EEeCCC
Confidence                                               000000 00111  2677887 88887777665 6766 344444


Q ss_pred             CeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          375 GELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       375 ~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      |+.-..+..   ....+.++.|.++++ ++.++.+|.|.-++-
T Consensus       279 G~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          279 GQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             TSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             CcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            554444432   235678888876555 555667888776653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.50  E-value=2.4e-06  Score=81.33  Aligned_cols=244  Identities=11%  Similarity=0.033  Sum_probs=135.1

Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEE-cCCCcEEEeecccc---cceeeeeccccccceEEEE
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILER---GGVETKLLGKHQGRAHKLA  157 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~---~~~~~~~~~~~~~~v~~~~  157 (458)
                      ...|+..++...+....+  .....+..++|.+  .+..|+.+ ...+.|+.+++...   ..... .+.........++
T Consensus       385 ~~~I~~id~~~~~~~~~~--~~~~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~-~i~~~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRDIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCCEECCS--CCCTTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCC-BCCSCC--CCCEE
T ss_pred             ccceEEEeCCCCcceeee--ccCcceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEE-EEeCCCCCcceEE
Confidence            356888888766543333  2234567889988  66555554 44678999888651   11111 1211223356688


Q ss_pred             EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEEEEecCCC
Q 012712          158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKY  236 (458)
Q Consensus       158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~  236 (458)
                      +.+.+.+++++-...+.|.++++........+..          .......++++|.++.++++-... +.|..+++...
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~----------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC----------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC----------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence            8866546666666778899999876543322211          112357789999755555544333 67877776542


Q ss_pred             ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      ..               ..+....-.....|+|+|++..|..+.  .+.|..+++.....                    
T Consensus       530 ~~---------------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--------------------  574 (699)
T 1n7d_A          530 DI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------------------  574 (699)
T ss_dssp             CC---------------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--------------------
T ss_pred             Ce---------------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--------------------
Confidence            21               111111223467899999765544443  34688888764211                    


Q ss_pred             CCccccCCCCCCcccccCceeecC-ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKG-HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEP  393 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  393 (458)
                                         +.+.. ........++++ ..+ .++++....+.|..++..+++.+..+......+..|++
T Consensus       575 -------------------~~~~~~~~~~~~P~glav-d~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          575 -------------------KTILEDEKRLAHPFSLAV-FED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             -------------------EEECCCSSSCSSCCCCEE-ETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred             -------------------EEEEecCCcCCCceEeEE-ECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence                               11100 000001234444 333 45555566789999998888888777543334556655


Q ss_pred             cCC
Q 012712          394 HPH  396 (458)
Q Consensus       394 s~~  396 (458)
                      .+.
T Consensus       634 ~~~  636 (699)
T 1n7d_A          634 FHQ  636 (699)
T ss_dssp             CSS
T ss_pred             eCc
Confidence            433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.49  E-value=0.00044  Score=59.33  Aligned_cols=274  Identities=9%  Similarity=0.015  Sum_probs=141.4

Q ss_pred             CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec--cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712          104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR  181 (458)
Q Consensus       104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  181 (458)
                      ...+.++.|.+  ++..+++ +..|.| +.....++.-.....  ......+.++.+.+ + ..++ ++..+.|.. ...
T Consensus        35 ~~~~~~v~~~~--~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~-~g~~g~i~~-S~D  106 (327)
T 2xbg_A           35 TATILDMSFID--RHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWI-VGEPPIMLH-TTD  106 (327)
T ss_dssp             SSCEEEEEESS--SSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEE-EEETTEEEE-ESS
T ss_pred             CCcEEEEEECC--CCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEE-EECCCeEEE-ECC
Confidence            34788999986  6666664 456654 222222322121111  12244688899986 3 4444 455665443 223


Q ss_pred             CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE-EEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR-LYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      .++.-.......  .     ....+..+.+.++ +..++++ .+|.|. -.|-  ++.              -.......
T Consensus       107 gG~tW~~~~~~~--~-----~~~~~~~i~~~~~-~~~~~~~-~~g~v~~S~Dg--G~t--------------W~~~~~~~  161 (327)
T 2xbg_A          107 GGQSWSQIPLDP--K-----LPGSPRLIKALGN-GSAEMIT-NVGAIYRTKDS--GKN--------------WQALVQEA  161 (327)
T ss_dssp             TTSSCEECCCCT--T-----CSSCEEEEEEEET-TEEEEEE-TTCCEEEESST--TSS--------------EEEEECSC
T ss_pred             CCCCceECcccc--C-----CCCCeEEEEEECC-CCEEEEe-CCccEEEEcCC--CCC--------------CEEeecCC
Confidence            333222211100  0     1123566776654 4555555 455443 2221  110              00111122


Q ss_pred             ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712          261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR  340 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (458)
                      ...+..+++.|++++++.+..+.++.-+-..+..                                   .....  ....
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t-----------------------------------W~~~~--~~~~  204 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA-----------------------------------WEPHN--RTTS  204 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS-----------------------------------CEEEE--CCSS
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc-----------------------------------eeECC--CCCC
Confidence            3467889999999999888777655432110100                                   00000  1111


Q ss_pred             ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec----CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      .  .+..+.+ +++++.++.+ .+|.+++.+...++.-..+..    +...+.++++.+++.+++++. ++.| .+..+.
T Consensus       205 ~--~~~~~~~-~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~Dg  278 (327)
T 2xbg_A          205 R--RLHNMGF-TPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDG  278 (327)
T ss_dssp             S--CEEEEEE-CTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESST
T ss_pred             C--ccceeEE-CCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCC
Confidence            1  3677777 8888766544 578877764322443332321    223578899998887776654 6766 344444


Q ss_pred             ccccc-cc---cccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          417 ADRAT-LP---TNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       417 ~~~~~-~~---~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ++.-. +.   .....+.++.|.+++.++ .++.+|.|.-++
T Consensus       279 G~tW~~~~~~~~~~~~~~~v~~~~~~~~~-~~G~~G~i~~~~  319 (327)
T 2xbg_A          279 GQTWQQDVDVKKVPSNFYKILFFSPDQGF-ILGQKGILLRYV  319 (327)
T ss_dssp             TSSCEECGGGTTSSSCCCEEEEEETTEEE-EECSTTEEEEEC
T ss_pred             CcccEEcCccCCCCCCeEEEEEECCCceE-EEcCCceEEEEc
Confidence            43222 21   123567888898777655 556788765543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.42  E-value=0.0023  Score=64.45  Aligned_cols=116  Identities=16%  Similarity=0.172  Sum_probs=71.1

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC----CeEEEEEcC-CCcEEEeecc
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD----DRSIVTCAA-DGQVRHAQIL  136 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~l~s~~~-dg~i~vw~~~  136 (458)
                      ..|...+.+.  .+++.++ .+.+.++.++.++........-...|.|+++.|..+    +++++.|.. |++++++++.
T Consensus       514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            4576666543  4555554 578888887765432222123456899999987322    468888886 9999999998


Q ss_pred             cccceeeeeccccccceEEEEEcC-CCCeEEEEecCCCeEEEEeCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDGLVQHFDLR  181 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~  181 (458)
                      +.+.+....+.. .....++.+.. .+..+|..|-.||.+.-+.+.
T Consensus       591 ~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          591 SFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             TCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             CCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            766554444432 12233333321 233567888889987665543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=0.00043  Score=62.08  Aligned_cols=276  Identities=9%  Similarity=0.003  Sum_probs=142.3

Q ss_pred             ceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc-ccccceEEEEE-------cCCCCeEEEEecCCC----
Q 012712          106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQGRAHKLAI-------EPGSPHVFYTCGEDG----  173 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~-------~~~~~~~l~s~~~dg----  173 (458)
                      ....|+|.|..+++++++....+.|++.|..++......... ........++|       ++++..++++...++    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            456889997212444444444467888888765543321111 12235789999       999954555544432    


Q ss_pred             --eEEEEeCCC-CCcc-----ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC-------CCcc
Q 012712          174 --LVQHFDLRT-GAAT-----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR-------KYKW  238 (458)
Q Consensus       174 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-------~~~~  238 (458)
                        .|.+++... +...     ..+.           .-.....++++|+++.++++-..++.|..+|+.       ++..
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~-----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~  288 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIA-----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS  288 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEE-----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred             CceEEEEecCCCCceeecccceeec-----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence              366666433 2222     1111           111356788999767777788888999999997       4432


Q ss_pred             CCCccCCCCCCCcCCCc-cccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712          239 DGSTDFGQPADYFCPPN-LIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD  315 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (458)
                      -.......+ .  .... ...........++|+|+|+.|..+.  ...|+.++.........   .+   ....+.....
T Consensus       289 ~tp~~~~~~-g--~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~---~~---~~~aG~~g~~  359 (496)
T 3kya_A          289 WDPIVKNNP-N--TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI---TP---YNFVGGYKQS  359 (496)
T ss_dssp             CCCBGGGCT-T--TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC---CC---EEEEEBTTBC
T ss_pred             ecccccccc-c--ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec---cc---EEecCCCCCC
Confidence            000000000 0  0000 0111223467899999999544443  34688876543211000   00   0000000000


Q ss_pred             CccccCCCCCCcccccCceeecCccceeeee-EEEEec-------CCCcEEEEecCCCeEEEEEecCCeEEEEeecC---
Q 012712          316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVK-GVNFFG-------PKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD---  384 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---  384 (458)
                      +       ..+  .......|.   .   .. .++. .       ++|.++++=..+++|+.++ .+|. +.++.+.   
T Consensus       360 G-------~~D--G~~~~a~f~---~---P~~gv~v-d~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~  421 (496)
T 3kya_A          360 G-------YRD--DVGTEARMN---N---PCQGVFV-KNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGAS  421 (496)
T ss_dssp             C-------CBC--CBGGGCBCS---S---EEEEEEE-ECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTT
T ss_pred             c-------ccC--CcccccccC---C---CeEEEEE-ccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccccc
Confidence            0       000  000001111   1   12 2332 4       5667777767788999998 4664 4444322   


Q ss_pred             ------------C---------ceeeEEEecCC-CCeEEEeecCCcEEEecCCcccc
Q 012712          385 ------------R---------HVVNCIEPHPH-STVLASSGIESDIKILTPNAADR  419 (458)
Q Consensus       385 ------------~---------~~v~~~~~s~~-~~~l~s~~~d~~i~iw~~~~~~~  419 (458)
                                  .         .....|+++++ |.++++=....+|+.++++....
T Consensus       422 ~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          422 TSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             HHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             ccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence                        0         13678999997 76666666678899998876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.30  E-value=0.0017  Score=57.46  Aligned_cols=204  Identities=12%  Similarity=0.043  Sum_probs=119.3

Q ss_pred             CCCceEEEEEecCCCEEE-EecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712           60 HRGCVNTVSFNTDGDILI-SGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI  135 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~  135 (458)
                      ....+..|+|++.+..|. +-...+.|..+++....   ....+..........+++.+. .+.+.++-...+.|.+.++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~-~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEECT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec-CCceEEEECCCCeEEEEeC
Confidence            446688999998655554 44556889999987522   112222223456778888761 4555556666788999888


Q ss_pred             ccccceeeeeccccccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712          136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      ........  +.........++++|.+..++++-.. .+.|...++...........          .......|+++|+
T Consensus       189 ~g~~~~~l--~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~----------~l~~P~glavd~~  256 (400)
T 3p5b_L          189 KGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE----------NIQWPNGITLDLL  256 (400)
T ss_dssp             TTCSEEEE--EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS----------SCSCEEEEEEETT
T ss_pred             CCCceEEE--EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC----------CCCceEEEEEEeC
Confidence            65433222  22233457899999976566665433 47888888875443222211          1124689999987


Q ss_pred             CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712          215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM  291 (458)
Q Consensus       215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~  291 (458)
                      ++.+.++-...+.|..+|+......               .+..  ........+++.. +.++++.. .+.|..++..+
T Consensus       257 ~~~lY~aD~~~~~I~~~d~dG~~~~---------------~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          257 SGRLYWVDSKLHSISSIDVNGGNRK---------------TILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT  320 (400)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCCCE---------------EEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSS
T ss_pred             CCEEEEEECCCCEEEEEeCCCCccE---------------EEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCC
Confidence            6655566566788999998653211               1111  1123345666633 33444443 45788888665


Q ss_pred             C
Q 012712          292 G  292 (458)
Q Consensus       292 ~  292 (458)
                      +
T Consensus       321 G  321 (400)
T 3p5b_L          321 G  321 (400)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=0.00074  Score=60.57  Aligned_cols=256  Identities=12%  Similarity=0.065  Sum_probs=136.0

Q ss_pred             ceEEEEEcCC-CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE-------CCCCCcEEEEec
Q 012712          152 RAHKLAIEPG-SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI-------DPRNANLFAVAG  223 (458)
Q Consensus       152 ~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~~l~~~~  223 (458)
                      ....|+|+|. +.+++++....+.|++.|+.++...........       ....+..++|       +++ +..|+++.
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-------~~~~p~~ia~~~~~~~~d~~-G~~lyvad  211 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-------PTNRIRSIAFNKKIEGYADE-AEYMIVAI  211 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-------SCSBEEEEEECCCBTTTBCT-TCEEEEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-------ccCCCcEEEEeecccccCCC-CCEEEEEe
Confidence            4678999994 435555555557799999888766544432110       1224789999       998 45455554


Q ss_pred             CCC-------eEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEec-CCcEEEEEcc---
Q 012712          224 SDE-------YTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQD---  290 (458)
Q Consensus       224 ~dg-------~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~~~~---  290 (458)
                      ..+       .|.+++... ++....     +     ...... .-.....++++|++ .++++.. .+.|+.+|+.   
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~-----~-----~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~  280 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDR-----S-----DIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF  280 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTT-----S-----CEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred             CCCCCcccCceEEEEecCCCCceeec-----c-----cceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence            433       256665333 111100     0     000111 12245678899954 4444444 4579999987   


Q ss_pred             ----CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-ecCCC
Q 012712          291 ----MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCG  365 (458)
Q Consensus       291 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-~~~dg  365 (458)
                          ++....+......                        .....+..... ..  ....+++ +|+|++|+. -...+
T Consensus       281 ~~~~tg~~~tp~~~~~~------------------------g~~~~l~~~~~-~~--~p~~ia~-~p~G~~lYvaD~~~h  332 (496)
T 3kya_A          281 KTIKNGGSWDPIVKNNP------------------------NTFKQLFTIAD-PS--WEFQIFI-HPTGKYAYFGVINNH  332 (496)
T ss_dssp             HHHHTTCCCCCBGGGCT------------------------TTEEEEEECSS-SS--CCEEEEE-CTTSSEEEEEETTTT
T ss_pred             ccccCceeecccccccc------------------------cccceeEecCC-CC--CceEEEE-cCCCCEEEEEeCCCC
Confidence                4322111000000                        00000011111 11  2467888 999996544 45678


Q ss_pred             eEEEEEecC--CeE--EEEeecC---C------------ceee-EEEec-------CCCCeEEEeecCCcEEEecCCccc
Q 012712          366 RIFIWKKKG--GEL--IRVIEAD---R------------HVVN-CIEPH-------PHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       366 ~i~iwd~~~--~~~--~~~~~~~---~------------~~v~-~~~~s-------~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      +|+.++...  +..  ..++.+.   .            .... .++..       +++.++++=....+|+.++.. +.
T Consensus       333 ~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~  411 (496)
T 3kya_A          333 YFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GI  411 (496)
T ss_dssp             EEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CB
T ss_pred             EEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-CC
Confidence            999977643  322  1223221   0            1234 44554       456666666678899999853 33


Q ss_pred             ccccccc------------------------cccEEEEEEecC-CcEEEeeecCCceEEEEE
Q 012712          419 RATLPTN------------------------IEQVCFSIYSAD-YWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       419 ~~~~~~~------------------------~~~v~~~~~s~d-~~~l~s~~~d~~i~~w~~  455 (458)
                      ..++.+.                        ......++++++ |.+.++=.....|+.++.
T Consensus       412 v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          412 VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence            3322211                        123678999997 777666566677887764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.23  E-value=0.0037  Score=60.14  Aligned_cols=204  Identities=12%  Similarity=0.038  Sum_probs=119.1

Q ss_pred             CCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEee
Q 012712           60 HRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQ  134 (458)
Q Consensus        60 h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~  134 (458)
                      ....+..|+|.+.. .++++-...+.|+.+++....   ....+..........|++.+  .+ +++++-...+.|.+.+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~--~~~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW--IHSNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee--cCCcEEEEecCCCeEEEEe
Confidence            34567799999854 445555566889999987531   11222232345567888887  55 5556666778999999


Q ss_pred             cccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      +........  +.........|++.|.+..++++-... +.|...++........+. .         .......|++++
T Consensus       500 ldG~~~~~l--~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~---------~l~~P~GLavD~  567 (791)
T 3m0c_C          500 TKGVKRKTL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-E---------NIQWPNGITLDL  567 (791)
T ss_dssp             TTSSSEEEE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-S---------SCSCEEEEEEET
T ss_pred             CCCCeEEEE--EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-C---------CCCCceEEEEec
Confidence            865432221  223334578999999864666654333 789888887544332221 1         112578999998


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc--ccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712          214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG--DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD  290 (458)
Q Consensus       214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~  290 (458)
                      .++.++++=...+.|..+++......               .+..  ........|++..+ .++++-. .+.|...+..
T Consensus       568 ~~~~LYwaD~~~~~I~~~d~dG~~~~---------------~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          568 LSGRLYWVDSKLHSISSIDVNGGNRK---------------TILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCE---------------EEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEeCCCCcEEEEecCCCceE---------------EEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCC
Confidence            75655565566778999998654311               1111  01123446666433 3334433 3468777766


Q ss_pred             CCC
Q 012712          291 MGL  293 (458)
Q Consensus       291 ~~~  293 (458)
                      ++.
T Consensus       632 tG~  634 (791)
T 3m0c_C          632 TGS  634 (791)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.19  E-value=0.00066  Score=58.85  Aligned_cols=113  Identities=14%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCcEEEEecCC--
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANLFAVAGSD--  225 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~d--  225 (458)
                      .....++|.|++ .+++ +..+|.|++++  .++. ..+..... ...   .......++++|+   ++.+.++-...  
T Consensus        31 ~~P~~ia~~pdG-~l~V-~e~~g~I~~i~--~g~~-~~~~~~~v-~~~---g~~~p~gia~~pdf~~~g~lYv~~~~~~~  101 (352)
T 2ism_A           31 EVPWALAFLPDG-GMLI-AERPGRIRLFR--EGRL-STYAELSV-YHR---GESGLLGLALHPRFPQEPYVYAYRTVAEG  101 (352)
T ss_dssp             SCEEEEEECTTS-CEEE-EETTTEEEEEE--TTEE-EEEEECCC-CCS---TTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred             CCceEEEEcCCC-eEEE-EeCCCeEEEEE--CCCc-cEeecceE-eec---CCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence            346789999999 5544 45669999998  3432 11111110 000   1235789999997   44454444332  


Q ss_pred             ---CeEEEEecCCCccCCCccCCCCCCCcCCCccc--cccccceeEEEeCCCCcEEEEec
Q 012712          226 ---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAFSDQSELLVSYN  280 (458)
Q Consensus       226 ---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~  280 (458)
                         +.|..++...........+      .  ..+.  .........++|.|+|.+.++.+
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~l------~--~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          102 GLRNQVVRLRHLGERGVLDRVV------L--DGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEE------E--EEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCccEEEEEEeCCCCcCceEEE------E--EeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence               5688887764321000000      0  0000  01112336899999998777643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.18  E-value=0.00048  Score=57.67  Aligned_cols=173  Identities=13%  Similarity=0.056  Sum_probs=102.8

Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc--cccccceeEEEe---CCCCcEEEEec
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAF---SDQSELLVSYN  280 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~---~~~~~~l~~~~  280 (458)
                      ..++.|++.++.++++.-..+.|..||...+..... .+         ....  ......+..+.|   .|+++++++..
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~---------~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI---------DGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC---------TTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec---------CCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            457889886555555555899999999875432111 00         0111  111234689999   68888888543


Q ss_pred             --------------CCcEEEEEcc---CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712          281 --------------DEFIYLFTQD---MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV  343 (458)
Q Consensus       281 --------------~~~i~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (458)
                                    +..+..||+.   +++..........                          ....+...+... .
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~--------------------------~~~~~~~~g~~~-~  137 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKV--------------------------QDEFEKKAGKRP-F  137 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHH--------------------------HHHHHHHHSSCC-E
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccc--------------------------cccccccccccc-c
Confidence                          2358889987   4322111000000                          000000001111 1


Q ss_pred             eeeEEEEecCCCcEEEEecCC-CeEEEEEecCCeEEEEeecC------CceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          344 TVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVIEAD------RHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      ....++. +++|+..++++.. +.|...+.. ++.+..+...      .-..+.|+++|+|+.|++....|.|..+|+..
T Consensus       138 ~~nDvav-D~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          138 GVVQSAQ-DRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEEE-CTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCceeEE-CCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            3678888 9999999988888 887777764 3433332211      12367999999999888887799999999884


Q ss_pred             c
Q 012712          417 A  417 (458)
Q Consensus       417 ~  417 (458)
                      .
T Consensus       216 p  216 (334)
T 2p9w_A          216 P  216 (334)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.17  E-value=0.00035  Score=58.53  Aligned_cols=167  Identities=10%  Similarity=0.095  Sum_probs=106.8

Q ss_pred             CCCceEEEEEecCCCEEEEec-CCCeEEEEECCCcceeeeeccC----C--CcceeEEEE---ccCCCCeEEEEEc----
Q 012712           60 HRGCVNTVSFNTDGDILISGS-DDRRVILWDWKTERVKLSFHSG----H--NDNVFQAKI---MPFTDDRSIVTCA----  125 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~----~--~~~i~~~~~---~~~~~~~~l~s~~----  125 (458)
                      ..-.--+++|.+....|..++ ..++|..|+...+........+    .  ...+..+.|   .|  ++.++++..    
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~--~grL~vv~~~~~a   88 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN--SKRLFAVMKNAKS   88 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS--CCEEEEEEEETTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC--CCcEEEEEccccc
Confidence            333445788988555555555 7899999998765433222122    1  124679999   58  877777543    


Q ss_pred             ---------CCCcEEEeecc---cccceeeeeccccc-----------cceEEEEEcCCCCeEEEEecCC-CeEEEEeCC
Q 012712          126 ---------ADGQVRHAQIL---ERGGVETKLLGKHQ-----------GRAHKLAIEPGSPHVFYTCGED-GLVQHFDLR  181 (458)
Q Consensus       126 ---------~dg~i~vw~~~---~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~  181 (458)
                               .+..+..+|+.   +++.+....+....           .....++..++| +..++++.. +.|...+..
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCC
Confidence                     25779999998   66665544343222           247899999999 677878877 888777766


Q ss_pred             CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      .. ....+........    .....+.|+++|+ ++.|++....|.+..+|++.
T Consensus       168 G~-~~~~~~~~~~~~~----~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          168 GK-TVSTFAWESGNGG----QRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SC-CEEEEEECCCCSS----SCCSCSEEEEETT-TTEEEEESSSSSEEEEECSS
T ss_pred             CC-EEeeeeecCCCcc----cccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCC
Confidence            44 2222221111000    1224679999998 56666665699999999873

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.11  E-value=0.0065  Score=57.03  Aligned_cols=157  Identities=9%  Similarity=0.061  Sum_probs=98.9

Q ss_pred             CceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc--CCCcEEEeecccc
Q 012712           62 GCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILER  138 (458)
Q Consensus        62 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~  138 (458)
                      .....|++.+.+. +.++-...+.|.+.+++.... ..+....-.....+++.|  ....|+.+.  ..+.|...++...
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp--~~G~lY~tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDP--AEGFMYWTEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEcc--CCCeEEEeCCCCCCEEEEEeCCCC
Confidence            3566888987655 445555678899999875443 223223345678999998  554555444  2466777776543


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      .....  . ........+++++++..++++-...+.|...|+..... ..+..          .......+++..  +.+
T Consensus       157 ~~~~l--~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~----------~l~~P~glav~~--~~l  220 (628)
T 4a0p_A          157 ERTTL--V-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD----------DLPHPFGLTQYQ--DYI  220 (628)
T ss_dssp             SCEEE--E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE----------CCSCEEEEEEET--TEE
T ss_pred             ceEEE--E-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec----------cCCCceEEEEEC--CEE
Confidence            32221  2 23456788999998757777777788999999976544 23221          111345777765  356


Q ss_pred             EEEecCCCeEEEEecCCCc
Q 012712          219 FAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~  237 (458)
                      +++-...+.|...|..+++
T Consensus       221 y~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          221 YWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEETTTTEEEEEETTTCC
T ss_pred             EEecCCCCEEEEEECCCCC
Confidence            6666667888888876554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.08  E-value=5.2e-05  Score=72.24  Aligned_cols=222  Identities=10%  Similarity=0.024  Sum_probs=121.9

Q ss_pred             CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC----CCccceeeecccCCCCcceee
Q 012712          128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT----GAATELFTCRPIDDRRNYMTV  203 (458)
Q Consensus       128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~  203 (458)
                      ..|+..++........  +. ....+..++|++.+..++++-...+.|+.+++..    ......+..          ..
T Consensus       386 ~~I~~id~~~~~~~~~--~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~----------~~  452 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------DI  452 (699)
T ss_dssp             TC-CEECTTSCCEECC--SC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS----------CC
T ss_pred             cceEEEeCCCCcceee--ec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC----------CC
Confidence            5677777765443322  22 2345678899987656666656678899999875    121111110          11


Q ss_pred             cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C-
Q 012712          204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-  281 (458)
Q Consensus       204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-  281 (458)
                      ..+..|++.+.+++++++-...+.|.++++......               .+..........++++|.+.+|.... . 
T Consensus       453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~---------------~l~~~~~~~P~giavDp~~g~ly~td~~~  517 (699)
T 1n7d_A          453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK---------------TLFREQGSKPRAIVVDPVHGFMYWTDWGT  517 (699)
T ss_dssp             --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE---------------EECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred             CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE---------------EEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence            134578888665666666667788999988654311               11111123457788998655444333 2 


Q ss_pred             -CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-
Q 012712          282 -EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-  359 (458)
Q Consensus       282 -~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-  359 (458)
                       +.|..+++....                                       ...+.... ......+++ +|+++.|+ 
T Consensus       518 ~~~I~~~~~dG~~---------------------------------------~~~l~~~~-l~~PnGlav-d~~~~~LY~  556 (699)
T 1n7d_A          518 PAKIKKGGLNGVD---------------------------------------IYSLVTEN-IQWPNGITL-DLLSGRLYW  556 (699)
T ss_dssp             SCCEEBCCSSSCC---------------------------------------CCEESCSS-CSSCCCEEE-CTTTCCEEE
T ss_pred             CCeEEEEeCCCCC---------------------------------------eeEEEeCC-CCCccEEEE-eccCCEEEE
Confidence             356666554311                                       11111000 012457787 98765555 


Q ss_pred             EecCCCeEEEEEecCCeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          360 SGSDCGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       360 ~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +-+..+.|..+++.... .+.+..   .......|++..+ .++++....+.|..++..+++..
T Consensus       557 aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             EETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred             EecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence            44556789999985433 333321   1123456666544 45555566788999987766543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.03  E-value=0.0054  Score=53.08  Aligned_cols=244  Identities=12%  Similarity=0.062  Sum_probs=121.4

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCcEEEEecC---
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANLFAVAGS---  224 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~---  224 (458)
                      .....++|.|++ .+ +.+..+|.|+++| ..++  ..+...... ..   .......|+++|+   ++.+.++-..   
T Consensus        29 ~~P~~ia~~pdG-~l-~V~e~~g~I~~~d-~~G~--~~~~~~~v~-~~---g~~g~~gia~~pdf~~~g~lyv~~~~~~~   99 (354)
T 3a9g_A           29 EVPWSIAPLGGG-RY-LVTERPGRLVLIS-PSGK--KLVASFDVA-NV---GEAGLLGLALHPEFPKKSWVYLYASYFAE   99 (354)
T ss_dssp             SCEEEEEEEETT-EE-EEEETTTEEEEEC-SSCE--EEEEECCCC-CS---TTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred             CCCeEEEEcCCC-eE-EEEeCCCEEEEEe-CCCc--eEeecccee-ec---CCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence            346789999998 55 4455669999997 3443  222111100 00   1234789999996   4555444332   


Q ss_pred             C----CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--------------cEEE
Q 012712          225 D----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--------------FIYL  286 (458)
Q Consensus       225 d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------------~i~i  286 (458)
                      +    ..|..|+.......  .  ......  ...+..........++|.|||.+.++.++.              .|..
T Consensus       100 ~~~~~~~v~r~~~~~~~~~--~--~~~~~l--~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r  173 (354)
T 3a9g_A          100 GGHIRNRVIRGRLDGSTFK--L--KEVKTL--IDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR  173 (354)
T ss_dssp             GGCEEEEEEEEEECSSSCC--E--EEEEEE--EEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred             CCCcceEEEEEEECCCCcC--c--CccEEE--EEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence            3    56777776543100  0  000000  000111111234679999999877765432              2222


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCC
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCG  365 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg  365 (458)
                      ++.+..  ..                 .          +++- ........++.+   ...++| +| +|+++++-...+
T Consensus       174 i~~dG~--~p-----------------~----------~npf-~~~~i~a~G~rn---p~Gla~-d~~~g~l~v~d~g~~  219 (354)
T 3a9g_A          174 VDEEGR--PP-----------------A----------DNPF-PNSPIWSYGHRN---PQGIDW-HRASGVMVATEHGPV  219 (354)
T ss_dssp             ECTTSC--CC-----------------T----------TSSS-TTCCEEEECCSC---CCEEEE-CTTTCCEEEEECCSS
T ss_pred             EcCCCC--CC-----------------C----------CCCC-CCCcEEEEccCC---cceEEE-eCCCCCEEEEecCCC
Confidence            222110  00                 0          0000 001111234554   467888 99 666555422211


Q ss_pred             ---eEEEEEecCCe------------------EEEEeecCCceeeEEEec-------CCCCeEEEeecCCcEEEecCCcc
Q 012712          366 ---RIFIWKKKGGE------------------LIRVIEADRHVVNCIEPH-------PHSTVLASSGIESDIKILTPNAA  417 (458)
Q Consensus       366 ---~i~iwd~~~~~------------------~~~~~~~~~~~v~~~~~s-------~~~~~l~s~~~d~~i~iw~~~~~  417 (458)
                         .|.+.  ..+.                  ++..+......+..++|.       .+|.++++.-..+.|...+++..
T Consensus       220 ~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          220 GHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             SCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             CCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence               23332  2221                  223331112346778883       46777776666778888887753


Q ss_pred             -cc---cccc-cccccEEEEEEecCCcEEEeee
Q 012712          418 -DR---ATLP-TNIEQVCFSIYSADYWWSKSQN  445 (458)
Q Consensus       418 -~~---~~~~-~~~~~v~~~~~s~d~~~l~s~~  445 (458)
                       +.   ..+. ....++..+++.|||.+.++..
T Consensus       298 g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          298 MEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             GCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence             22   1222 2345799999999997665543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.99  E-value=0.0063  Score=52.70  Aligned_cols=258  Identities=13%  Similarity=0.082  Sum_probs=125.2

Q ss_pred             cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee---ccccccceEEEEEcCC---CCeEEEEecCC-----C
Q 012712          105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL---LGKHQGRAHKLAIEPG---SPHVFYTCGED-----G  173 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~l~s~~~d-----g  173 (458)
                      .....++|.|  +++++++ ..+|.|.+++  .++......   ..........++++|+   +..++++-...     +
T Consensus        31 ~~P~~ia~~p--dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLP--DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECT--TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcC--CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            3467999999  9985555 4568999888  332211111   1122356789999998   43555554433     6


Q ss_pred             eEEEEeCCCCCcc---ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-------------CCeEEEEecCCCc
Q 012712          174 LVQHFDLRTGAAT---ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDIRKYK  237 (458)
Q Consensus       174 ~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~~  237 (458)
                      .|..++...+...   ..+...+......  +  ....++|.|+ +.+.++.+.             .|.|.-++... +
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~--h--~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~  179 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGL--H--SGGRIAFGPD-GMLYVTTGEVYERELAQDLASLGGKILRLTPEG-E  179 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCC--C--CCCCEEECTT-SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-S
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCC--c--CCceEEECCC-CCEEEEECCCCCCccccCCCCCceEEEEEcCCC-C
Confidence            7888887654221   1111111000111  1  2368999998 455554332             24566666542 1


Q ss_pred             cCCCccCCCCCCC---cCCCccccccccceeEEEeCC-CCcEEEEecC-CcE------EEEEccCCCCC-CCCCCCCccc
Q 012712          238 WDGSTDFGQPADY---FCPPNLIGDEQVGITGLAFSD-QSELLVSYND-EFI------YLFTQDMGLGP-NPPPSSPVST  305 (458)
Q Consensus       238 ~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-~~i------~i~~~~~~~~~-~~~~~~~~~~  305 (458)
                      ...    ..|...   ........+ ......++|+| +|+++++-.. +.+      .+.-+..+... .+....    
T Consensus       180 ~p~----~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g----  250 (352)
T 2ism_A          180 PAP----GNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVG----  250 (352)
T ss_dssp             BCT----TCTTTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCS----
T ss_pred             CCC----CCcccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccC----
Confidence            100    000000   001111111 23467889999 6776665442 221      12222222100 000000    


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE------EE
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL------IR  379 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~  379 (458)
                               +.        .......+...+..+..   ...++|  .+|+++++.-..+.|...+++....      ..
T Consensus       251 ---------~~--------~~~~~~~p~~~~~~~~a---p~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~  308 (352)
T 2ism_A          251 ---------RG--------NDPRYRDPLYFWPQGFP---PGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVE  308 (352)
T ss_dssp             ---------CC--------CCTTSCCCSEECTTCCC---EEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred             ---------CC--------CCCCCcCCeEecCCCCC---CcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchh
Confidence                     00        00000122233333333   456666  3677777666678888888764321      12


Q ss_pred             EeecCCceeeEEEecCCCCeEEEee
Q 012712          380 VIEADRHVVNCIEPHPHSTVLASSG  404 (458)
Q Consensus       380 ~~~~~~~~v~~~~~s~~~~~l~s~~  404 (458)
                      .+-.....+..+++.|||.++++..
T Consensus       309 ~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          309 TALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             eecccCCCeeEEEECCCCcEEEEEe
Confidence            2222235688999999998776653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.98  E-value=0.0019  Score=54.72  Aligned_cols=188  Identities=11%  Similarity=0.186  Sum_probs=110.7

Q ss_pred             CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC----Ce---EEEE-EcC--CCcEEEeeccc-ccce
Q 012712           73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD----DR---SIVT-CAA--DGQVRHAQILE-RGGV  141 (458)
Q Consensus        73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~---~l~s-~~~--dg~i~vw~~~~-~~~~  141 (458)
                      ..+++.....+-+.+||+ +|+.+..+ ..  +.++.+..-|  +    ++   ++++ .-.  +++|++|++.. ...+
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~--~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRY--DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEE--EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEec--ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            355666666788999999 78887776 22  4566666655  3    22   2233 333  57899997742 2222


Q ss_pred             eeeeccc------cc-cceEEEEE--cCC-CCeEEEEecCCCeEEEEeCC---CC----CccceeeecccCCCCcceeec
Q 012712          142 ETKLLGK------HQ-GRAHKLAI--EPG-SPHVFYTCGEDGLVQHFDLR---TG----AATELFTCRPIDDRRNYMTVV  204 (458)
Q Consensus       142 ~~~~~~~------~~-~~v~~~~~--~~~-~~~~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~  204 (458)
                      ..  +..      .. ..+..+++  +|. +..+++....+|.+..|++.   .+    +.+..+..           ..
T Consensus       114 ~~--i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----------gs  180 (355)
T 3amr_A          114 QS--MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----------NS  180 (355)
T ss_dssp             EE--CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----------SS
T ss_pred             ee--ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----------CC
Confidence            22  211      11 45666777  774 43467788888999999883   22    23333332           23


Q ss_pred             ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc--ccccccceeEEEe--CCCCc-EEEEe
Q 012712          205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL--IGDEQVGITGLAF--SDQSE-LLVSY  279 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~--~~~~~-~l~~~  279 (458)
                      .+..+...+. ...|+.+-++..|..++.+...-...          .....  ...-...+..|++  .++++ +|+++
T Consensus       181 q~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~~----------~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS  249 (355)
T 3amr_A          181 QTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSNG----------TVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS  249 (355)
T ss_dssp             CEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSCC----------EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred             CcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCCc----------eEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence            5778888886 56888888887777777553210000          00001  1112236778887  45555 55555


Q ss_pred             c--CCcEEEEEcc
Q 012712          280 N--DEFIYLFTQD  290 (458)
Q Consensus       280 ~--~~~i~i~~~~  290 (458)
                      +  ++...+||..
T Consensus       250 sQG~~s~~Vydr~  262 (355)
T 3amr_A          250 SQGNSSYAIYDRQ  262 (355)
T ss_dssp             EGGGTEEEEEESS
T ss_pred             cCCCCEEEEEECC
Confidence            5  4479999986

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.93  E-value=0.0032  Score=53.34  Aligned_cols=191  Identities=14%  Similarity=0.202  Sum_probs=110.8

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC----CC---E-EEEec
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD----GD---I-LISGS   80 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~---~-l~s~~   80 (458)
                      ...++++...++-+.++|+ +|+.+..                     +..  +.++.+..-|+    |+   + +++.-
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~---------------------~~~--g~~nnVD~r~~~~l~g~~~dla~as~R   94 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHS---------------------YNT--GKLNNVDIRYDFPLNGKKVDIAAASNR   94 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEE---------------------ECC--SCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEE---------------------ccC--CCcccEEEecccccCCceEeEEEEeCC
Confidence            4455666677888999999 5887743                     332  45666665552    22   2 33333


Q ss_pred             C--CCeEEEEECC--Ccceeeeecc---C--CC-cceeEEEE--ccCCCC-eEEEEEcCCCcEEEeecccc-------cc
Q 012712           81 D--DRRVILWDWK--TERVKLSFHS---G--HN-DNVFQAKI--MPFTDD-RSIVTCAADGQVRHAQILER-------GG  140 (458)
Q Consensus        81 ~--d~~i~iwd~~--~~~~~~~~~~---~--~~-~~i~~~~~--~~~~~~-~~l~s~~~dg~i~vw~~~~~-------~~  140 (458)
                      .  +++|.+|+++  ++. +..+-.   .  .. ..++.+|+  +|. .+ -+++....+|.+..|++...       +.
T Consensus        95 ~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~-~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~l  172 (355)
T 3amr_A           95 SEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQK-TGKYYAMVTGKEGEFEQYELKADKNGYISGKK  172 (355)
T ss_dssp             STTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCC-CCcEEEEEECCCCeEEEEEEEeCCCCcccceE
Confidence            4  5789999773  333 333311   0  11 56777887  662 23 36778888999999998432       22


Q ss_pred             eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC--ccceeeecccCCCCcceeecceEEEEE--CCCCC
Q 012712          141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA--ATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNA  216 (458)
Q Consensus       141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~  216 (458)
                      +..  +. ....+..+...+.. ..|+.+-++.-|..++.+...  ....+.......     -...+..|++  .+++.
T Consensus       173 VR~--f~-lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~-----l~aDvEGLai~~~~~g~  243 (355)
T 3amr_A          173 VRA--FK-MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-----LTRDIEGLTIYYAADGK  243 (355)
T ss_dssp             EEE--EE-CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS-----BCSCEEEEEEEECGGGC
T ss_pred             EEE--ec-CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCc-----cccCcceEEEEecCCCC
Confidence            222  22 23578888898877 467888888777777755221  111221111100     1124667777  44432


Q ss_pred             -cEEEEecCCCeEEEEecC
Q 012712          217 -NLFAVAGSDEYTRLYDIR  234 (458)
Q Consensus       217 -~~l~~~~~dg~i~i~d~~  234 (458)
                       .+|+++-.+....+||..
T Consensus       244 gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          244 GYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEEEGGGTEEEEEESS
T ss_pred             EEEEEEcCCCCEEEEEECC
Confidence             344444467799999986

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.89  E-value=0.0089  Score=51.05  Aligned_cols=256  Identities=18%  Similarity=0.139  Sum_probs=124.9

Q ss_pred             ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCcEEEEe--cC
Q 012712          150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANLFAVA--GS  224 (458)
Q Consensus       150 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~--~~  224 (458)
                      -.....|+|.|++ .++++--..|.|++++...++............    ........|+++|+   ++.+.++-  ..
T Consensus        31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~----~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSP----SGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCC----BTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceee----cCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3456889999999 566665558999999876555322211111100    02335789999995   34333321  23


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--------------cEEEEEcc
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--------------FIYLFTQD  290 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------------~i~i~~~~  290 (458)
                      ++.|.-|.......... .+..+...+  ..+..........|+|.|||.+.++.++.              .|.-++.+
T Consensus       106 ~~~v~R~~~~~~~~~~~-~~~~~~~i~--~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGE-QLGAPDTVF--RGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             SEEEEEEEBCTTSCTTC-CBCCCEEEE--EEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             CCEEEEEEeCCCCcccc-cCCCcEEEE--EcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence            45566666554221000 000000000  00111112234679999999877775432              12222211


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFI  369 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~i  369 (458)
                      .                         ...    .+++- .....--.++.+   ...++| +|+|++.++= +.++.=.|
T Consensus       183 G-------------------------~ip----~~nPf-~~~~i~a~G~RN---p~Gla~-dp~G~L~~~d~g~~~~del  228 (347)
T 3das_A          183 G-------------------------EPA----PGNPF-PGSPVYSYGHRN---VQGLAW-DDKQRLFASEFGQDTWDEL  228 (347)
T ss_dssp             S-------------------------SBC----TTCSS-TTCCEEEBCCSB---CCEEEE-CTTCCEEEEECCSSSCEEE
T ss_pred             C-------------------------Ccc----CCCCC-CCCeEEeeCCCC---cceEEE-CCCCCEEEEecCCCCCcee
Confidence            1                         000    00000 001112236665   467888 9988766542 22332223


Q ss_pred             EEecCCe------------------EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc----c-cccccc
Q 012712          370 WKKKGGE------------------LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR----A-TLPTNI  426 (458)
Q Consensus       370 wd~~~~~------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~----~-~~~~~~  426 (458)
                      --+..+.                  ++..+..+......|+|. +|.+++..-..+.|....++....    . .+....
T Consensus       229 n~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~  307 (347)
T 3das_A          229 NAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEY  307 (347)
T ss_dssp             EEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTS
T ss_pred             eEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCC
Confidence            2222221                  122232222345677776 455565555556666556554321    1 233345


Q ss_pred             ccEEEEEEecCCcEEE-eeecCC
Q 012712          427 EQVCFSIYSADYWWSK-SQNFSC  448 (458)
Q Consensus       427 ~~v~~~~~s~d~~~l~-s~~~d~  448 (458)
                      .++..++..|||.+.+ +...||
T Consensus       308 gR~~dv~~~pDG~lyv~td~~~g  330 (347)
T 3das_A          308 GRLRTVAPAGGDKLWLVTSNTDG  330 (347)
T ss_dssp             SCEEEEEEEETTEEEEEECTTSS
T ss_pred             CCccEEEECCCCcEEEEEcCCCC
Confidence            6899999999996554 444444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.81  E-value=0.014  Score=50.60  Aligned_cols=274  Identities=13%  Similarity=0.130  Sum_probs=128.1

Q ss_pred             ceeEEEEccCCCCe-EEEEEcCCCcEEEeecccccc--eee--eeccccccceEEEEEcCC---CCeEEEEecC------
Q 012712          106 NVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGG--VET--KLLGKHQGRAHKLAIEPG---SPHVFYTCGE------  171 (458)
Q Consensus       106 ~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~~--~~~--~~~~~~~~~v~~~~~~~~---~~~~l~s~~~------  171 (458)
                      ....|+|.|  +++ ++++ ...|.|++++......  +..  ............++++|+   +..+.++-..      
T Consensus        19 ~P~~i~~~p--dG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLP--DNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECS--TTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcC--CCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            467899999  998 5554 4578999887432111  110  001112345689999996   4355555333      


Q ss_pred             -CCeEEEEeCCCCC--c--cce-eeecccCCCCcceeecceEEEEECCCCCcEEEEecC-------------CCeEEEEe
Q 012712          172 -DGLVQHFDLRTGA--A--TEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYD  232 (458)
Q Consensus       172 -dg~i~iwd~~~~~--~--~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d  232 (458)
                       ...|..+++....  .  .+. +...+......  |  ....++|.|+ +.+.++.+.             .|.|.-++
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~--h--~~~~l~~~pd-G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGN--H--FGGRLVFDGK-GYLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSS--C--CCCCEEECSS-SEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCc--c--cCccEEECCC-CcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence             2356666665331  1  111 11111000011  1  2357999998 555554332             24666666


Q ss_pred             cCCCccCCCccCCCCCCCc--CCCccccccccceeEEEeCC-CCcEEEEecCC--cEEEEEccCCCCCCCCCCCCccccc
Q 012712          233 IRKYKWDGSTDFGQPADYF--CPPNLIGDEQVGITGLAFSD-QSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRS  307 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~  307 (458)
                      .... ...    ..|....  ....+..........++|+| +|+++++-...  .=.|.-+..+... -.+   .....
T Consensus       171 ~dG~-~p~----~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ny-Gwp---~~~~~  241 (353)
T 2g8s_A          171 DQGE-IPD----DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNY-GWP---LATWG  241 (353)
T ss_dssp             TTSC-CCT----TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBC-CTT---TBCSS
T ss_pred             CCCC-CCC----CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcC-CCC---CccCC
Confidence            5432 100    0010000  00111111123578899999 67766654321  1122222222110 000   00000


Q ss_pred             cccccCCCCccccCC-CCCCcccccCceeecCccceeeeeEEEEec------CCCcEEEEecCCCeEEEEEecCCeEEEE
Q 012712          308 EASEMGSDHTSAASP-STANTDVRIAPQVYKGHRNCVTVKGVNFFG------PKCEYVVSGSDCGRIFIWKKKGGELIRV  380 (458)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s------~~~~~l~~~~~dg~i~iwd~~~~~~~~~  380 (458)
                        ..+.  +..+... .........+...+..|..   ...++|+.      .+|+++++.-..+.|...++..++.+..
T Consensus       242 --~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~a---p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~  314 (353)
T 2g8s_A          242 --INYS--GFKIPEAKGEIVAGTEQPVFYWKDSPA---VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTED  314 (353)
T ss_dssp             --BCTT--SSCCTTCCBSSCTTSCCCSEEESSCCC---EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             --CCCC--CCccCcccCCCCCCccCCeEEeCCCcC---cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeee
Confidence              0000  0000000 0000000122333333433   56677632      2578888777788999999887655433


Q ss_pred             --e-ecCCceeeEEEecCCCCeEEEe
Q 012712          381 --I-EADRHVVNCIEPHPHSTVLASS  403 (458)
Q Consensus       381 --~-~~~~~~v~~~~~s~~~~~l~s~  403 (458)
                        + ......+..+++.|||.++++.
T Consensus       315 ~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          315 GRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             EEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             EEcccCCCCceeEEEECCCCcEEEEE
Confidence              2 1223468899999999876653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.69  E-value=0.005  Score=53.34  Aligned_cols=105  Identities=12%  Similarity=0.063  Sum_probs=72.5

Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEEecCCe------------EEEEeec------CCceeeEEEecCCC---CeEEEe
Q 012712          345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE------------LIRVIEA------DRHVVNCIEPHPHS---TVLASS  403 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~------~~~~v~~~~~s~~~---~~l~s~  403 (458)
                      +..+.. +|+|++||..+ +..|.|..+..+.            ..+.+.-      ...+|..+.|+|-+   ..|++-
T Consensus        68 i~qlvl-SpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           68 TFHVIS-STSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TCEEEE-CTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             eeEEEE-CCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            566776 99999999886 5689999887331            1223332      24679999999964   579999


Q ss_pred             ecCCcEEEecCCcccc--ccc---------ccccccEEEEEEecCCcEE--EeeecCCceE
Q 012712          404 GIESDIKILTPNAADR--ATL---------PTNIEQVCFSIYSADYWWS--KSQNFSCSIL  451 (458)
Q Consensus       404 ~~d~~i~iw~~~~~~~--~~~---------~~~~~~v~~~~~s~d~~~l--~s~~~d~~i~  451 (458)
                      ..|+.|++||+.....  ..+         ......|.+++|++++-.|  ++.+..|.|+
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            9999999999986321  111         1112458999999998444  4455777665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.67  E-value=0.02  Score=48.34  Aligned_cols=232  Identities=13%  Similarity=0.110  Sum_probs=114.2

Q ss_pred             CCeEEEEEc-CC-----CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCC-
Q 012712          117 DDRSIVTCA-AD-----GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGA-  184 (458)
Q Consensus       117 ~~~~l~s~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~-  184 (458)
                      ++..++.|+ .+     ..+.++|..+.+......+.........+.  .++ .+++.|+.+     ..+.+||+.+.+ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHD-RIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECC-EEEEEcCCCCCccCceEEEEECCCCCC
Confidence            556666666 32     367888887765433221221111112222  234 677777765     468899998876 


Q ss_pred             --ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-----CeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712          185 --ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI  257 (458)
Q Consensus       185 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  257 (458)
                        -...-..+.  ..      .....+.+  + +.+++.|+.+     ..+.+||..+.+......+            .
T Consensus        91 ~~W~~~~~~p~--~r------~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~------------p  147 (301)
T 2vpj_A           91 GVWYSVAPMNV--RR------GLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM------------Q  147 (301)
T ss_dssp             CCCEEECCCSS--CC------BSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC------------S
T ss_pred             CeeEECCCCCC--Cc------cceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCC------------C
Confidence              322211110  01      11122222  2 5677777654     3588999887664322111            0


Q ss_pred             cccccceeEEEeCCCCcEEEEec-C-----CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712          258 GDEQVGITGLAFSDQSELLVSYN-D-----EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI  331 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (458)
                      . ....-..+.+  ++++++.|+ +     +.+..||+.+..-.                                    
T Consensus       148 ~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~------------------------------------  188 (301)
T 2vpj_A          148 T-AREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT------------------------------------  188 (301)
T ss_dssp             S-CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE------------------------------------
T ss_pred             C-CcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE------------------------------------
Confidence            0 0111112222  566666665 2     24888887653210                                    


Q ss_pred             CceeecCccceeeeeEEEEecCCCcEEEEecCC-----CeEEEEEecCCeEEEE--eecCCceeeEEEecCCCCeEEEee
Q 012712          332 APQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKGGELIRV--IEADRHVVNCIEPHPHSTVLASSG  404 (458)
Q Consensus       332 ~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~  404 (458)
                      .+..+.....   -.+++.  .++++++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++++++.|+
T Consensus       189 ~~~~~p~~r~---~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  261 (301)
T 2vpj_A          189 NVTPMATKRS---GAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAG  261 (301)
T ss_dssp             EECCCSSCCB---SCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eCCCCCcccc---cceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcC
Confidence            0000110111   112222  267777787764     4689999977654322  1111111122222  677777777


Q ss_pred             cC-----CcEEEecCCccccc
Q 012712          405 IE-----SDIKILTPNAADRA  420 (458)
Q Consensus       405 ~d-----~~i~iw~~~~~~~~  420 (458)
                      .+     ..+.+||+++.+..
T Consensus       262 ~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          262 YDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             BCSSSBEEEEEEEETTTTEEE
T ss_pred             cCCCcccccEEEEcCCCCeEE
Confidence            65     35777887765443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.57  E-value=0.033  Score=48.45  Aligned_cols=271  Identities=11%  Similarity=0.125  Sum_probs=160.0

Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      .+..|.|-|+.++..+.+....-    -+.-.+|  ..+.||.-. ...+.++|+++...+....+.   .+|.-=.|-.
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP--~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis  115 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS  115 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECCC----SEEEECS--SSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE
T ss_pred             CCCeEEEEECCCCCcceeccccc----ceeeeCC--CCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC
Confidence            34589999998876654432222    2445678  777777665 578999999988776664432   3455555655


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-------CCCeEEEEe
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------SDEYTRLYD  232 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~i~d  232 (458)
                      +.  .|+..+ +..|+-|++... .+.+.+..+...      ....|..-..+++ .++++..+       -.|.+.+|.
T Consensus       116 ~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS  185 (494)
T 1bpo_A          116 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYS  185 (494)
T ss_dssp             TT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------TTCEEEEEEECTT-SSEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CC--eEEEEc-CCeeEEecccCCCCchhheecchhc------ccceEEEEEECCC-CCeEEEEeecccCCcccceEEEee
Confidence            44  333333 457999999753 344455433221      2346777888887 45655433       246788998


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC---cEEEEecC----CcEEEEEccCCC-CCCCCCCCCcc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---ELLVSYND----EFIYLFTQDMGL-GPNPPPSSPVS  304 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~----~~i~i~~~~~~~-~~~~~~~~~~~  304 (458)
                      .+...                .....+|......+....+.   .+++.+..    +++.+.++.... ....+.     
T Consensus       186 ~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-----  244 (494)
T 1bpo_A          186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-----  244 (494)
T ss_dssp             STTCC----------------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-----
T ss_pred             ccccc----------------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-----
Confidence            87653                33445555444444433221   24444432    468888886531 111111     


Q ss_pred             ccccccccCCCCccccCCCCCCcccccCceeecCc-cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712          305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  383 (458)
                                               .+....+... .....-.++.. ++.-..++.-+.-|.|++||++++.++..-+-
T Consensus       245 -------------------------kk~vdv~fppe~~~DFPvamqv-s~kygviyviTK~G~i~lyDleTgt~i~~nrI  298 (494)
T 1bpo_A          245 -------------------------KKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (494)
T ss_dssp             -------------------------CEEEECCCCTTSTTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             -------------------------ceeeeeeCCcccccCceeEEEe-cccCCEEEEEecCceEEEEecccceeeeeecc
Confidence                                     0001111111 01112356666 78778888889999999999999999987776


Q ss_pred             CCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                      ....|..-+-+....=++.....|.|.--.++...
T Consensus       299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            66677665555554455555677776666555443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.54  E-value=0.033  Score=47.77  Aligned_cols=177  Identities=12%  Similarity=0.054  Sum_probs=95.1

Q ss_pred             CCCcEEEEEccccccccccccccccccccceEEeeeeeE-eecCCCceEEEEEec--CCC-EEEEe-cC--CCeEEEEEC
Q 012712           18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAK-LDKHRGCVNTVSFNT--DGD-ILISG-SD--DRRVILWDW   90 (458)
Q Consensus        18 ~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~--~~~-~l~s~-~~--d~~i~iwd~   90 (458)
                      .+|.|.++|.++.....              .++..... +.........+.+.+  ++. +|..+ ..  +.+|.+|++
T Consensus        81 ~~G~I~~~d~~~~~~~~--------------~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~  146 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV--------------SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKF  146 (355)
T ss_dssp             -CCEEEEEETTSSSCCE--------------EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEE
T ss_pred             CCCeEEEEecCCCCCce--------------EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEE
Confidence            68999999987322110              11111110 111234556677655  453 34333 22  568888887


Q ss_pred             CCccee----eeeccCCCcceeEEEEccCCCCeEEEEEcC-----------------CCcEEEeecccccceeeeecccc
Q 012712           91 KTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----------------DGQVRHAQILERGGVETKLLGKH  149 (458)
Q Consensus        91 ~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-----------------dg~i~vw~~~~~~~~~~~~~~~~  149 (458)
                      +.+...    ..+....-...+.+.+.+  +|.+.++...                 .|.|..++.  ++ ...  +...
T Consensus       147 d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~--~~~~  219 (355)
T 3sre_A          147 QEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRV--VAEG  219 (355)
T ss_dssp             ETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEE--EEEE
T ss_pred             ECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEE--eecC
Confidence            654322    222112234578999999  9988777541                 233444443  32 211  2223


Q ss_pred             ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       150 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      -...+.++|+|+++.++++-+..+.|..|++.............        .......+++.++++++.+++.
T Consensus       220 l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--------~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          220 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--------FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--------CSSEEEEEEECTTTCCEEEEEE
T ss_pred             CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--------CCCCCceEEEeCCCCcEEEEec
Confidence            34578999999997677777778999999987432221111111        1224567778773145554443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.54  E-value=0.03  Score=47.19  Aligned_cols=151  Identities=17%  Similarity=0.218  Sum_probs=79.1

Q ss_pred             CCCEEEEec-CC-----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-----CcEEEeeccccc-
Q 012712           72 DGDILISGS-DD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERG-  139 (458)
Q Consensus        72 ~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~-  139 (458)
                      ++.+++.|+ .+     ..+.+||..+.+-...- ..........+...  ++..++.|+.+     ..+.+||..+.. 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP-SITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC-CCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            455666666 32     36888998776532211 11111111112223  67788888765     468899988776 


Q ss_pred             --ceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712          140 --GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID  212 (458)
Q Consensus       140 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  212 (458)
                        ......+.........+.+  ++ .+++.|+.+     ..+.+||+.+.+-...-..+  ....      ...++.+ 
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~------~~~~~~~-  158 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TARE------GAGLVVA-  158 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCCB------SCEEEEE-
T ss_pred             CeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCcc------cceEEEE-
Confidence              3332222221122222222  44 677777754     36888998876543322111  0111      1122222 


Q ss_pred             CCCCcEEEEecCC-----CeEEEEecCCCccC
Q 012712          213 PRNANLFAVAGSD-----EYTRLYDIRKYKWD  239 (458)
Q Consensus       213 p~~~~~l~~~~~d-----g~i~i~d~~~~~~~  239 (458)
                       + +.+++.|+.+     ..+.+||+.+.+..
T Consensus       159 -~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          159 -S-GVIYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             -T-TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             -C-CEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence             2 5677777754     45889998887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.50  E-value=0.034  Score=46.87  Aligned_cols=66  Identities=8%  Similarity=0.127  Sum_probs=39.1

Q ss_pred             CCcEEEEecCC-----CeEEEEEecCCeEEEE--eecCCceeeEEEecCCCCeEEEeecCC-----cEEEecCCcccccc
Q 012712          354 KCEYVVSGSDC-----GRIFIWKKKGGELIRV--IEADRHVVNCIEPHPHSTVLASSGIES-----DIKILTPNAADRAT  421 (458)
Q Consensus       354 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iw~~~~~~~~~  421 (458)
                      ++++++.|+.+     ..+.+||..+.+-...  +.........+.  -++++++.|+.++     .+.+||+.+.+...
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            67788888764     4688999877643322  111111111222  2677888887653     48889888765443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.48  E-value=0.043  Score=47.46  Aligned_cols=254  Identities=11%  Similarity=0.051  Sum_probs=126.2

Q ss_pred             cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec---cccccceEEEEEcCC---CCeEEEEecC---C---
Q 012712          105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL---GKHQGRAHKLAIEPG---SPHVFYTCGE---D---  172 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~~l~s~~~---d---  172 (458)
                      .....++|.|  +++++++ ..+|.|++++. +++ .....+   .........|+++|+   +..++++-+.   +   
T Consensus        29 ~~P~~ia~~p--dG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLG--GGRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEE--TTEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcC--CCeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            4567899999  9985555 45589998873 333 111111   112346789999997   4355554432   3   


Q ss_pred             -CeEEEEeCCCCC--c--cc-eeeecccCCCCcceeecceEEEEECCCCCcEEEEecC-------------CCeEEEEec
Q 012712          173 -GLVQHFDLRTGA--A--TE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-------------DEYTRLYDI  233 (458)
Q Consensus       173 -g~i~iwd~~~~~--~--~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~  233 (458)
                       ..|..|+.....  .  .+ .+...+  ....  |  ....++|.|+ +.++++.+.             .|.|.-++.
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~--~~~~--h--~~~~l~~~pD-G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~  176 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIP--GAYI--H--NGGRIRFGPD-GMLYITTGDAADPRLAQDLSSLAGKILRVDE  176 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEE--CCSS--C--CCCCEEECTT-SCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCC--CCCC--c--CCceEEECCC-CcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence             567778766441  1  11 111111  1111  1  2467999998 455555332             245555554


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecCC----cEEEEEccCCCC-CCCCCCCCccccc
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYNDE----FIYLFTQDMGLG-PNPPPSSPVSTRS  307 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~----~i~i~~~~~~~~-~~~~~~~~~~~~~  307 (458)
                      ... ...    ..|.   ....+..........++|+| +|+++++-...    .|.+..  .+.. -.+.......   
T Consensus       177 dG~-~p~----~npf---~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~---  243 (354)
T 3a9g_A          177 EGR-PPA----DNPF---PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAG---  243 (354)
T ss_dssp             TSC-CCT----TSSS---TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCC---
T ss_pred             CCC-CCC----CCCC---CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCC---
Confidence            321 100    0010   00111111123457899999 67766664422    244332  2110 0000000000   


Q ss_pred             cccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEe------cCCCcEEEEecCCCeEEEEEecCC-eEE-
Q 012712          308 EASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFF------GPKCEYVVSGSDCGRIFIWKKKGG-ELI-  378 (458)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~------s~~~~~l~~~~~dg~i~iwd~~~~-~~~-  378 (458)
                                        ......+...+ ..+..   ...++|+      ..+|+++++.-..+.|...++... +.. 
T Consensus       244 ------------------~~~~~~p~~~~~~~~~a---p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~  302 (354)
T 3a9g_A          244 ------------------RGEFVDPVIDTGSETWA---PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRK  302 (354)
T ss_dssp             ------------------CTTSCCCSEECTTCCCC---EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEE
T ss_pred             ------------------CCCCcCCEeecCCCCcC---CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccc
Confidence                              00001122222 22222   4566662      146777777777788999988753 332 


Q ss_pred             -EEee-cCCceeeEEEecCCCCeEEEee
Q 012712          379 -RVIE-ADRHVVNCIEPHPHSTVLASSG  404 (458)
Q Consensus       379 -~~~~-~~~~~v~~~~~s~~~~~l~s~~  404 (458)
                       ..+. +....+..+++.|||.++++..
T Consensus       303 ~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          303 ISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             eeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence             2332 2235688999999998766653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.42  E-value=0.044  Score=46.31  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             CeEEEEEcC--CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC----CeEEEEeCCCCCccceeee
Q 012712          118 DRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED----GLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       118 ~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~  191 (458)
                      +.+++.|+.  ...+.+||..+.+......+.........+.+  ++ .+++.|+.+    ..+.+||+.+.+-...-..
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            445566664  35688888877654332222221122222222  44 677788755    5788899887754332211


Q ss_pred             cccCCCCcceeecceEEEEECCCCCcEEEEecCC------CeEEEEecCCCccC
Q 012712          192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTRLYDIRKYKWD  239 (458)
Q Consensus       192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~  239 (458)
                      +.  ...      ....+.+  + +.+++.|+.+      ..+.+||..+.+..
T Consensus        89 p~--~r~------~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           89 PT--PRD------SLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             SS--CCB------SCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             Cc--ccc------ceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            10  111      1122223  2 5677777765      45889999887643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.42  E-value=0.043  Score=46.12  Aligned_cols=85  Identities=9%  Similarity=0.028  Sum_probs=51.1

Q ss_pred             cCCCcEEEEecC-CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC--CcEEEecCCccccccccccccc
Q 012712          352 GPKCEYVVSGSD-CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE--SDIKILTPNAADRATLPTNIEQ  428 (458)
Q Consensus       352 s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~  428 (458)
                      +++++.|+-.+. ..+|++.++..+.....+.+   ... ..++|++.+|+-...+  ..|..-++++.....+....  
T Consensus       153 ~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~--  226 (302)
T 3s25_A          153 NTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN--  226 (302)
T ss_dssp             EEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC--
T ss_pred             eEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC--
Confidence            677888775554 57788888766654433332   222 2356888888766543  35666667666655554322  


Q ss_pred             EEEEEEecCCcEEEee
Q 012712          429 VCFSIYSADYWWSKSQ  444 (458)
Q Consensus       429 v~~~~~s~d~~~l~s~  444 (458)
                      +  ..|+|++.+|..+
T Consensus       227 ~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          227 I--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             E--EEEEEETTEEEEE
T ss_pred             c--ceEEECCCEEEEE
Confidence            2  3377777777654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.40  E-value=0.02  Score=48.69  Aligned_cols=106  Identities=12%  Similarity=0.129  Sum_probs=54.2

Q ss_pred             eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC-----C------CeEEEEeCCCCCccc
Q 012712          119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-----D------GLVQHFDLRTGAATE  187 (458)
Q Consensus       119 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~  187 (458)
                      .+++.|+  ..+..||..+++... ..+..............++ .+++.|+.     .      ..+..||..+.+-..
T Consensus         6 ~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            6 LIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            3455565  568899988776533 2222211222222333455 67777773     1      127788888765422


Q ss_pred             eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC--------CeEEEEecCCCccC
Q 012712          188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--------EYTRLYDIRKYKWD  239 (458)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~  239 (458)
                      .-..+   .     .......+.+   ++.+++.|+.+        ..+.+||..+.+..
T Consensus        82 ~~~~p---~-----~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~  130 (315)
T 4asc_A           82 MPPLP---S-----PRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG  130 (315)
T ss_dssp             CCCBS---S-----CEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE
T ss_pred             CCCCC---c-----chhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe
Confidence            21111   0     0001122222   25677777742        45889999887643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.38  E-value=0.055  Score=46.44  Aligned_cols=189  Identities=12%  Similarity=0.122  Sum_probs=104.9

Q ss_pred             eEEEEEecCCCEEEEec------------CCCeEEEEECCCc--ce-eeeeccC-----CCcceeEEEEccCCCCe-EEE
Q 012712           64 VNTVSFNTDGDILISGS------------DDRRVILWDWKTE--RV-KLSFHSG-----HNDNVFQAKIMPFTDDR-SIV  122 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~--~~-~~~~~~~-----~~~~i~~~~~~~~~~~~-~l~  122 (458)
                      .-.+...|+|..+++++            .+|.|.++|.++.  +. ...+ .+     ..-....+.+.+..++. +|+
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34566788886655552            6899999998743  22 1112 12     12356667765511232 344


Q ss_pred             EE-cC--CCcEEEeecccccceee--eeccc-cccceEEEEEcCCCCeEEEEec-----------------CCCeEEEEe
Q 012712          123 TC-AA--DGQVRHAQILERGGVET--KLLGK-HQGRAHKLAIEPGSPHVFYTCG-----------------EDGLVQHFD  179 (458)
Q Consensus       123 s~-~~--dg~i~vw~~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~s~~-----------------~dg~i~iwd  179 (458)
                      .+ ..  +..|.+|++........  ..+.+ .-...+.+.+.++| .+.++..                 ..|.|..+|
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            43 22  56788888765433221  11222 12457899999998 5555543                 124555555


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD  259 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (458)
                      .  ++......           .-...+.++|+||+..+.++-+..+.|+.|++........            .... .
T Consensus       210 ~--~~~~~~~~-----------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~------------~~~~-~  263 (355)
T 3sre_A          210 P--NDVRVVAE-----------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP------------LRVL-S  263 (355)
T ss_dssp             T--TCCEEEEE-----------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE------------EEEE-E
T ss_pred             C--CeEEEeec-----------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec------------CEEE-e
Confidence            4  22221111           2234689999998544555556778999999864211100            0111 1


Q ss_pred             cccceeEEEeCC-CCcEEEEec
Q 012712          260 EQVGITGLAFSD-QSELLVSYN  280 (458)
Q Consensus       260 ~~~~i~~~~~~~-~~~~l~~~~  280 (458)
                      ..+..-.+++.+ +|.+.+++.
T Consensus       264 ~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          264 FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             CSSEEEEEEECTTTCCEEEEEE
T ss_pred             CCCCCceEEEeCCCCcEEEEec
Confidence            134567888998 588877665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.36  E-value=0.063  Score=46.72  Aligned_cols=250  Identities=12%  Similarity=0.070  Sum_probs=149.5

Q ss_pred             CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      ...|.+-|+.++..+.++...     ..+.-.+|.. ++++.-. ...+.++|+++.+.++.+...           ..|
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~~-----------e~V  108 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMT-----------DDV  108 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC-----CSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEECS-----------SCC
T ss_pred             CCeEEEEECCCCCcceecccc-----cceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceecC-----------CCc
Confidence            447888999887766544343     3356678887 5555443 689999999999887776642           245


Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec----C-
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----D-  281 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~-  281 (458)
                      .--.|-.+  +.|+..+ +..|+-|++....        .|...+.......  ...|..-..+++.++++..+    + 
T Consensus       109 vfWkWis~--~~l~lVT-~taVyHWsi~~~s--------~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~  175 (494)
T 1bpo_A          109 TFWKWISL--NTVALVT-DNAVYHWSMEGES--------QPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQN  175 (494)
T ss_dssp             CEEEEEET--TEEEEEC-SSEEEEEESSSSC--------CCEEEEECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred             eEEEecCC--CeEEEEc-CCeeEEecccCCC--------Cchhheecchhcc--cceEEEEEECCCCCeEEEEeecccCC
Confidence            55556543  4555544 3479999996532        1222222222222  46788888899999877433    2 


Q ss_pred             ---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC---
Q 012712          282 ---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC---  355 (458)
Q Consensus       282 ---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~---  355 (458)
                         |.+.+|..+.                                       ...+.+.||...  ...+.   .+|   
T Consensus       176 ~v~G~mQLYS~er---------------------------------------~~sQ~ieGhaa~--F~~~~---~~g~~~  211 (494)
T 1bpo_A          176 RVVGAMQLYSVDR---------------------------------------KVSQPIEGHAAS--FAQFK---MEGNAE  211 (494)
T ss_dssp             EEEEEEEEEESTT---------------------------------------CCEEEECCSEEE--EEEEE---CTTCSS
T ss_pred             cccceEEEeeccc---------------------------------------cccchheeeeee--eEEEe---cCCCCC
Confidence               3478888764                                       345666777653  22222   122   


Q ss_pred             --cEEEEecC---CCeEEEEEecCC--------eEEEEee----cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712          356 --EYVVSGSD---CGRIFIWKKKGG--------ELIRVIE----ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD  418 (458)
Q Consensus       356 --~~l~~~~~---dg~i~iwd~~~~--------~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~  418 (458)
                        +.++.+..   .++++|.++...        +....+.    .-.+-..++..|+....+..-..-|.|.+||++++.
T Consensus       212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence              23333322   378999998432        1111111    123446688889888888888899999999999997


Q ss_pred             cccccc-ccccEEEEEEecCCcEEEeeecCCceE
Q 012712          419 RATLPT-NIEQVCFSIYSADYWWSKSQNFSCSIL  451 (458)
Q Consensus       419 ~~~~~~-~~~~v~~~~~s~d~~~l~s~~~d~~i~  451 (458)
                      ++.... ..+.|...+......=++.....|.|.
T Consensus       292 ~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          292 CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             eeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            764332 223344444444443344445666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.32  E-value=0.012  Score=45.93  Aligned_cols=147  Identities=14%  Similarity=0.017  Sum_probs=81.8

Q ss_pred             cceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712          262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN  341 (458)
Q Consensus       262 ~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (458)
                      ..+..++|+|+|.+.+. .++.++-.+..+.....-                                ... .+..+...
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W--------------------------------~~s-~t~IG~~G   86 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNW--------------------------------MGR-AKKIGNGG   86 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCH--------------------------------HHH-CEEEECSC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccc--------------------------------ccc-ccEecccc
Confidence            36779999999998777 777666555432110000                                000 01111111


Q ss_pred             eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE------EEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI------RVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      .....++.| +|+|.+.++  .||.|+-++-.+...-      ..+ ..-=..+..|.+.|+|.+.+..  |+.++-+..
T Consensus        87 w~~F~a~~f-D~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~  161 (236)
T 1tl2_A           87 WNQFQFLFF-DPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALP  161 (236)
T ss_dssp             GGGCSEEEE-CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECC
T ss_pred             cccceEEEE-CCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCC
Confidence            111356666 999988887  5699988875331110      111 1111457899999999988776  777644443


Q ss_pred             Ccccc------ccc-c-cccccEEEEEEecCCcEEEeeecCCc
Q 012712          415 NAADR------ATL-P-TNIEQVCFSIYSADYWWSKSQNFSCS  449 (458)
Q Consensus       415 ~~~~~------~~~-~-~~~~~v~~~~~s~d~~~l~s~~~d~~  449 (458)
                      ..+..      .+. . ..-..-+-+.|+|+|.+.+..  ++.
T Consensus       162 P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          162 PVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             CSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             CCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence            32211      111 1 222235567799999777664  663

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.30  E-value=0.058  Score=46.87  Aligned_cols=158  Identities=9%  Similarity=0.074  Sum_probs=96.1

Q ss_pred             EecCCCEEEEecCCCeEEEEECCCcceeeeeccCC---CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-----
Q 012712           69 FNTDGDILISGSDDRRVILWDWKTERVKLSFHSGH---NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-----  140 (458)
Q Consensus        69 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-----  140 (458)
                      .+.+|..++.+- ++.||.-++.....-+.+...+   -..|..+..+|  +|++||..+. ..|.|-.+..+..     
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp--sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST--SGDLLCLFND-NEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT--TSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC--CCCEEEEecC-CeEEEEEecCccccCccc
Confidence            345666666554 3678887876443322221221   23688899999  9999999875 5788888763321     


Q ss_pred             -----ee--eeeccc----cccceEEEEEcCCCC--eEEEEecCCCeEEEEeCCCCCccceeeecccCC-CCcceeecce
Q 012712          141 -----VE--TKLLGK----HQGRAHKLAIEPGSP--HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD-RRNYMTVVNL  206 (458)
Q Consensus       141 -----~~--~~~~~~----~~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~v  206 (458)
                           +.  ...+..    ...+|..+.|+|-+.  ..|++-..|+.|++||+........ ....... .........+
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                 11  111211    246799999999763  3688889999999999986432222 1111100 0000122568


Q ss_pred             EEEEECCCCCcEEEEec--CCCeEEEEe
Q 012712          207 NAIAIDPRNANLFAVAG--SDEYTRLYD  232 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~--~dg~i~i~d  232 (458)
                      .+++|.++ +-.|+..+  .+|.|+-.-
T Consensus       183 ~S~~Fg~~-~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          183 TDLEFSKD-GLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EEEEECTT-SSCEEEEECTTSCEEEEES
T ss_pred             EEEEEcCC-CcEEEEEecCCCCCEEEEC
Confidence            89999995 66666644  778776543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.28  E-value=0.064  Score=45.19  Aligned_cols=149  Identities=13%  Similarity=0.187  Sum_probs=75.4

Q ss_pred             CCEEEEecCC----CeEEEEECCCcceeeeeccCCCcce-eEEEEccCCCCeEEEEEcCC-----CcEEEeeccccccee
Q 012712           73 GDILISGSDD----RRVILWDWKTERVKLSFHSGHNDNV-FQAKIMPFTDDRSIVTCAAD-----GQVRHAQILERGGVE  142 (458)
Q Consensus        73 ~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~~~~  142 (458)
                      +.+++.|+.+    ..+..||+.+.+-...- ....... .+++. -  ++..++.|+.+     ..+.+||..+.+...
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~   91 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVA-ELPSRRCRAGMVY-M--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS   91 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEE-E--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcc-cCCcccccceEEE-E--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence            3455555543    35788888776532211 1111111 12222 2  67788888754     357888887765433


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCC-----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      ...+.........+.+  ++ .+++.|+.++     .+.+||+.+.+-...-..+  ...      ....++.+   ++.
T Consensus        92 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~---~~~  157 (302)
T 2xn4_A           92 VANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN--TRR------SSVGVGVV---GGL  157 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS--SCC------BSCEEEEE---TTE
T ss_pred             CCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC--Ccc------cCceEEEE---CCE
Confidence            2222221122222222  44 6777777553     5778888776543321111  001      01122222   256


Q ss_pred             EEEEecCC-------CeEEEEecCCCccC
Q 012712          218 LFAVAGSD-------EYTRLYDIRKYKWD  239 (458)
Q Consensus       218 ~l~~~~~d-------g~i~i~d~~~~~~~  239 (458)
                      +++.|+.+       ..+.+||+.+.+..
T Consensus       158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          158 LYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             EEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             EEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            77777643       35889999877643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.27  E-value=0.027  Score=43.99  Aligned_cols=117  Identities=15%  Similarity=0.080  Sum_probs=64.5

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      ..+..++|+|++ .+ ++. .+|.++-.+..+.....-+.....   -+...-....++.|.|+ +.+.++  .||.|+-
T Consensus        41 ~~~~~laf~P~G-~L-YaV-~~G~Ly~~~~~t~~~~~W~~s~t~---IG~~Gw~~F~a~~fD~~-G~LYav--~dG~iyr  111 (236)
T 1tl2_A           41 SNFKFLFLSPGG-EL-YGV-LNDKIYKGTPPTHDNDNWMGRAKK---IGNGGWNQFQFLFFDPN-GYLYAV--SKDKLYK  111 (236)
T ss_dssp             TTCSEEEECTTS-CE-EEE-ETTEEEEESCCCSTTCCHHHHCEE---EECSCGGGCSEEEECTT-SCEEEE--ETTEEEE
T ss_pred             ccceeEEECCCc-cE-EEE-eCCeEEEECCCCCCcccccccccE---ecccccccceEEEECCC-CCEEEe--CCCEEEE
Confidence            367799999988 44 444 778777766554332211110000   00001112478999997 556655  6699987


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEE
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY  285 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~  285 (458)
                      ++..+.....-..        ....+-...-..+..|.+.|+|.+.+.. ++.++
T Consensus       112 ~~pP~~~~~~Wl~--------~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly  157 (236)
T 1tl2_A          112 ASPPQSDTDNWIA--------RATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY  157 (236)
T ss_dssp             ESCCCSTTCCHHH--------HSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred             eCCCcCCCCceec--------cccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence            7764422110000        0000111122568999999999988888 77754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.23  E-value=0.074  Score=44.95  Aligned_cols=150  Identities=10%  Similarity=0.081  Sum_probs=79.0

Q ss_pred             CCCEEEEecC----C-----CeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCC-----CcEEEeecc
Q 012712           72 DGDILISGSD----D-----RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQIL  136 (458)
Q Consensus        72 ~~~~l~s~~~----d-----~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~  136 (458)
                      ++.+++.|+.    +     ..+.+||..+.+-...-. ...... .+++. -  ++.+++.|+.+     ..+.+||..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-IGVGV-I--DGHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-CEEEE-E--TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-cEEEE-E--CCEEEEEcCCCCCcccccEEEECCC
Confidence            5667777775    2     357888987765322110 111111 12222 2  67778877753     357888887


Q ss_pred             cccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      +.+......+.........+.+  ++ .+++.|+.+     ..+.+||+.+.+-...-..+   .     ......++.+
T Consensus       146 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~-----~r~~~~~~~~  214 (308)
T 1zgk_A          146 RDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---T-----IRSGAGVCVL  214 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---S-----CCBSCEEEEE
T ss_pred             CCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC---C-----ccccceEEEE
Confidence            7654332222211122222233  44 677777764     45889998776533221111   0     0011122333


Q ss_pred             CCCCCcEEEEecCC-----CeEEEEecCCCccC
Q 012712          212 DPRNANLFAVAGSD-----EYTRLYDIRKYKWD  239 (458)
Q Consensus       212 ~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~  239 (458)
                        + +.+++.|+.+     ..+.+||+.+.+..
T Consensus       215 --~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          215 --H-NCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             --T-TEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             --C-CEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence              2 5677778764     46899999887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.13  E-value=0.21  Score=48.36  Aligned_cols=320  Identities=10%  Similarity=0.020  Sum_probs=165.0

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      ..|.++.. .+|. |..++.+ -+..+|..+++......   ......|.++...+  ++.+.+ +..+ -+..++..+.
T Consensus       103 ~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWi-gt~~-Gl~~~~~~~~  175 (758)
T 3ott_A          103 TDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK--DNQIYV-GTYN-GLCRYIPSNG  175 (758)
T ss_dssp             SCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT--TCCEEE-EETT-EEEEEETTTT
T ss_pred             ceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC--CCCEEE-EeCC-CHhhCccCCC
Confidence            35777654 3554 5555555 58888987655422100   11234688888776  666555 4444 4667776554


Q ss_pred             cceeeeeccc----cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712          139 GGVETKLLGK----HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       139 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      .... .....    ....|.++...+++ ..|..++. +-+..+|..+++.......          ....|.++...++
T Consensus       176 ~~~~-~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l----------~~~~i~~i~~d~~  242 (758)
T 3ott_A          176 KFEG-IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAF----------HNNSIKSLALDGN  242 (758)
T ss_dssp             EEEE-ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEE----------EEEEEEEEEECTT
T ss_pred             ceEE-ecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCC----------CCCeEEEEEEcCC
Confidence            3221 11111    12347888887766 33444544 4588888776543221111          2235788888776


Q ss_pred             CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC
Q 012712          215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG  294 (458)
Q Consensus       215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~  294 (458)
                       + .|..|+.+ -+.+++..+.+.......        ......-....|.++....+|.+.+.... .+.++.....  
T Consensus       243 -g-~lWigT~~-Gl~~~~~~~~~~~~~~~~--------~~~~~~l~~~~i~~i~~D~~g~lWiGT~~-Gl~~~~~~~~--  308 (758)
T 3ott_A          243 -G-DLLAGTDN-GLYVYHNDTTPLQHIIHD--------SRNIQSLTNNIIWNIFADQEHNIWLGTDY-GISLSRYNSA--  308 (758)
T ss_dssp             -C-CEEEEETT-EEEEECCTTSCCEEECCC--------TTCTTSCSCSCEEEEEECTTCCEEEEESS-SEEEECCCC---
T ss_pred             -C-CEEEEeCC-ceeEEecCCCcEEEEEcC--------CCCcCcCCcCeEEEEEEcCCCCEEEEeCC-cccccccCCc--
Confidence             3 44445544 588888766542110000        00000112346889988888876665544 4554432110  


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                      ...                                 ..............|.++.. +.+|.+.+. +.+| +..++..+
T Consensus       309 ~~~---------------------------------~~~~~~~~~~~~~~v~~i~~-D~~g~lWiG-t~~G-l~~~~~~~  352 (758)
T 3ott_A          309 LQF---------------------------------IPISQITGTGDGNQFYSLFR-DSKGFYWFG-GANG-LIRFTDPA  352 (758)
T ss_dssp             CEE---------------------------------EEHHHHSCSCCCCBEEEEEE-CTTCCEEEE-ETTE-EEEESCTT
T ss_pred             eeE---------------------------------EecccCCCCCCCceEEEEEE-cCCCCEEEe-eCCc-ceeecccc
Confidence            000                                 00000000011113777776 777775553 4444 66666544


Q ss_pred             Ce--EEEEeec-------CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc--c-----ccccEEEEEEecCC
Q 012712          375 GE--LIRVIEA-------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP--T-----NIEQVCFSIYSADY  438 (458)
Q Consensus       375 ~~--~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~-----~~~~v~~~~~s~d~  438 (458)
                      ++  ....+..       ....|.++.-.++|++.+ |. ++-|..|+..+++.....  .     ....|.++...++|
T Consensus       353 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g  430 (758)
T 3ott_A          353 GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG  430 (758)
T ss_dssp             SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS
T ss_pred             cccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC
Confidence            31  1222221       123588888888887655 33 457888998776544321  1     12348888888888


Q ss_pred             cEEEeeecCCceEEEE
Q 012712          439 WWSKSQNFSCSILLFE  454 (458)
Q Consensus       439 ~~l~s~~~d~~i~~w~  454 (458)
                      .+-+ |+..+-|.+++
T Consensus       431 ~lWi-gT~~~Gl~~~~  445 (758)
T 3ott_A          431 QLWI-STCLGGIFVVD  445 (758)
T ss_dssp             EEEE-EESSSCEEEEE
T ss_pred             CEEE-EECCCceEEEc
Confidence            5433 34444465554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.10  E-value=0.1  Score=44.04  Aligned_cols=148  Identities=9%  Similarity=0.046  Sum_probs=76.9

Q ss_pred             CEEEEecC--CCeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCC----CcEEEeecccccceeeeec
Q 012712           74 DILISGSD--DRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVRHAQILERGGVETKLL  146 (458)
Q Consensus        74 ~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~  146 (458)
                      .+++.|+.  ...+.+||..+++-...-. ...... .+++. -  ++..++.|+.+    ..+.++|..+.+......+
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AACVF-W--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEEEE-E--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEEEE-E--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            34555554  3568889988765322110 111111 12222 2  67788888754    5678888877654333222


Q ss_pred             cccccceEEEEEcCCCCeEEEEecCC------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712          147 GKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA  220 (458)
Q Consensus       147 ~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  220 (458)
                      .........+.+  ++ .+++.|+.+      ..+.+||+.+.+-...-..+  ....      ...++.+  + +.+++
T Consensus        89 p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~------~~~~~~~--~-~~iyv  154 (306)
T 3ii7_A           89 PTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML--TQRC------SHGMVEA--N-GLIYV  154 (306)
T ss_dssp             SSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS--SCCB------SCEEEEE--T-TEEEE
T ss_pred             CccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc--CCcc------eeEEEEE--C-CEEEE
Confidence            221122222222  44 677777765      45889998877543221111  0111      1122222  2 46777


Q ss_pred             EecC---------CCeEEEEecCCCccC
Q 012712          221 VAGS---------DEYTRLYDIRKYKWD  239 (458)
Q Consensus       221 ~~~~---------dg~i~i~d~~~~~~~  239 (458)
                      .|+.         -..+.+||+.+.+..
T Consensus       155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          155 CGGSLGNNVSGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             ECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred             ECCCCCCCCcccccceEEEeCCCCCeEE
Confidence            7763         345889999887643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.09  E-value=0.11  Score=44.37  Aligned_cols=112  Identities=16%  Similarity=0.183  Sum_probs=65.2

Q ss_pred             EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCccee--eee---ccCCCcceeEEEEccCCC----CeEEEEE--
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSF---HSGHNDNVFQAKIMPFTD----DRSIVTC--  124 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~---~~~~~~~i~~~~~~~~~~----~~~l~s~--  124 (458)
                      .+...-..-..|+|.|||.++++--..|.|++++..+++..  ..+   ..........|+++|  +    +.+.++-  
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P--df~~~g~lYv~yt~  103 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP--DYASDHMVYAYFTS  103 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT--THHHHCEEEEEEEC
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc--ccccCCEEEEEEec
Confidence            34434456789999999998887665899999986655432  111   122345688999998  6    4343432  


Q ss_pred             cCCCcEEEeeccccc----c---eee--eecc-ccccceEEEEEcCCCCeEEEEec
Q 012712          125 AADGQVRHAQILERG----G---VET--KLLG-KHQGRAHKLAIEPGSPHVFYTCG  170 (458)
Q Consensus       125 ~~dg~i~vw~~~~~~----~---~~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~  170 (458)
                      ..++.|.-|.+....    .   ...  ..+. ........|.|.|++ .++++.+
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~G  158 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTG  158 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECB
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEEC
Confidence            234455556554411    0   110  0111 112234679999999 6666654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.05  E-value=0.26  Score=47.80  Aligned_cols=329  Identities=9%  Similarity=0.020  Sum_probs=170.7

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV  141 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  141 (458)
                      ..|.++...+++..|..|.. +-+..+|..+++... +.......|.++...+  ++.+.+. ..+ -+.+++..+....
T Consensus       191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d~--~g~lWig-T~~-Gl~~~~~~~~~~~  264 (758)
T 3ott_A          191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALDG--NGDLLAG-TDN-GLYVYHNDTTPLQ  264 (758)
T ss_dssp             CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEECT--TCCEEEE-ETT-EEEEECCTTSCCE
T ss_pred             ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEcC--CCCEEEE-eCC-ceeEEecCCCcEE
Confidence            34888888877765555554 458888877665322 2111234588888776  6665544 444 4777876554322


Q ss_pred             eeeec-----cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          142 ETKLL-----GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       142 ~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      .....     .-....|.++....++ . |-.|+..| +.++... . ....+......   .......|.++.-..++ 
T Consensus       265 ~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~---~~~~~~~v~~i~~D~~g-  335 (758)
T 3ott_A          265 HIIHDSRNIQSLTNNIIWNIFADQEH-N-IWLGTDYG-ISLSRYN-S-ALQFIPISQIT---GTGDGNQFYSLFRDSKG-  335 (758)
T ss_dssp             EECCCTTCTTSCSCSCEEEEEECTTC-C-EEEEESSS-EEEECCC-C--CEEEEHHHHS---CSCCCCBEEEEEECTTC-
T ss_pred             EEEcCCCCcCcCCcCeEEEEEEcCCC-C-EEEEeCCc-ccccccC-C-ceeEEecccCC---CCCCCceEEEEEEcCCC-
Confidence            11000     0123458888888877 3 44555556 5444321 1 11111111000   00022357888877763 


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN  296 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~  296 (458)
                       .|..|+.+| +..++..+++......+...      .....-....|.++.-.++|.+.+.. ++.+..|+..++... 
T Consensus       336 -~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~-  405 (758)
T 3ott_A          336 -FYWFGGANG-LIRFTDPAGERHDAIWYRMG------DKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFI-  405 (758)
T ss_dssp             -CEEEEETTE-EEEESCTTSSCCCCEEECTT------CSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-
T ss_pred             -CEEEeeCCc-ceeecccccccceeEEeccC------CcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEE-
Confidence             444555554 66676654321100000000      00000113468888888888876654 568999997653110 


Q ss_pred             CCCCCCccccccccccCCCCccccCCCCCCcccccCceeec--CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                         ......  .......|.++.. +++|++.+ |+..+-+.++|..+
T Consensus       406 -----------------------------------~~~~~~~~~~~~~~~v~~i~~-d~~g~lWi-gT~~~Gl~~~~~~~  448 (758)
T 3ott_A          406 -----------------------------------HYNIVDNTGTYNTNWTYYIFE-DTAGQLWI-STCLGGIFVVDKHK  448 (758)
T ss_dssp             -----------------------------------EEEEECCC--CBSSSEEEEEE-CTTSEEEE-EESSSCEEEEEHHH
T ss_pred             -----------------------------------EeecCCCcCCCCCceEEEEEE-cCCCCEEE-EECCCceEEEcccc
Confidence                                               000000  0001113677776 77776444 55555688888653


Q ss_pred             C-----eEE---EEeec----CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc----ccccEEEEEEecCC
Q 012712          375 G-----ELI---RVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT----NIEQVCFSIYSADY  438 (458)
Q Consensus       375 ~-----~~~---~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~v~~~~~s~d~  438 (458)
                      .     ...   ..+..    ....|.++...++|.+.+.++..+-|..++..+++...+..    ....+.++....+|
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g  528 (758)
T 3ott_A          449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG  528 (758)
T ss_dssp             HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS
T ss_pred             ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC
Confidence            1     111   12211    12358889988899877633334557888887765443321    12357888888888


Q ss_pred             cEEEeeecCCceEEEE
Q 012712          439 WWSKSQNFSCSILLFE  454 (458)
Q Consensus       439 ~~l~s~~~d~~i~~w~  454 (458)
                      .+-+. +..| +..|+
T Consensus       529 ~lWig-t~~G-l~~~~  542 (758)
T 3ott_A          529 LLWVG-FHGG-VMRIN  542 (758)
T ss_dssp             CEEEE-ETTE-EEEEC
T ss_pred             CEEEE-ecCc-eEEEe
Confidence            44432 2344 55544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.04  E-value=0.12  Score=43.83  Aligned_cols=189  Identities=12%  Similarity=0.039  Sum_probs=95.5

Q ss_pred             eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC-----C----
Q 012712           12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-----D----   82 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d----   82 (458)
                      +++.|+  ..+.+||..+++....                    .+..............++.+++.|+.     .    
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~--------------------~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~   64 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCA--------------------SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDP   64 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEE--------------------ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSC
T ss_pred             EEEEcC--CceEEECCCCCeEecC--------------------CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccc
Confidence            344555  5688999997765311                    11111112222233357777777773     1    


Q ss_pred             --CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC--------CcEEEeecccccceeeeeccccccc
Q 012712           83 --RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------GQVRHAQILERGGVETKLLGKHQGR  152 (458)
Q Consensus        83 --~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--------g~i~vw~~~~~~~~~~~~~~~~~~~  152 (458)
                        ..+.+||..+++-...-.......-.+++..   ++..++.|+.+        ..+.+||..+.+......+......
T Consensus        65 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  141 (315)
T 4asc_A           65 MSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG  141 (315)
T ss_dssp             EEEEEEEEETTTTEEEECCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             cccceEEecCCCCeEEECCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence              1377888877653221100111111122222   67777777742        4588888877654332222211111


Q ss_pred             eEEEEEcCCCCeEEEEecC-C-----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712          153 AHKLAIEPGSPHVFYTCGE-D-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE  226 (458)
Q Consensus       153 v~~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  226 (458)
                      . +++. -++ .+++.|+. +     ..+.+||+.+.+-...-..+.  ..      ....++.+  + +.+++.|+.++
T Consensus       142 ~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r------~~~~~~~~--~-~~iyv~GG~~~  207 (315)
T 4asc_A          142 H-TVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT--AR------SLFGATVH--D-GRIIVAAGVTD  207 (315)
T ss_dssp             C-EEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS--CC------BSCEEEEE--T-TEEEEEEEECS
T ss_pred             e-eEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC--ch------hceEEEEE--C-CEEEEEeccCC
Confidence            1 2222 234 67777776 2     468899988764332211110  00      01122223  2 56777777654


Q ss_pred             -----eEEEEecCCCccC
Q 012712          227 -----YTRLYDIRKYKWD  239 (458)
Q Consensus       227 -----~i~i~d~~~~~~~  239 (458)
                           .+.+||+.+.+..
T Consensus       208 ~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          208 TGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             SSEEEEEEEEETTTTEEE
T ss_pred             CCccceEEEEECCCCeEE
Confidence                 5889999887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.98  E-value=0.21  Score=50.61  Aligned_cols=269  Identities=12%  Similarity=0.133  Sum_probs=143.5

Q ss_pred             CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      ....|.|-|+.++..+.+....    --+.-.+|  ..+.||.-. ..++.++|+.+...+....+   ..+|.-=.|-.
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~----AdsAIMnP--~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWis  115 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS  115 (1630)
T ss_pred             CCceEEEEECCCCCCccccccc----chhhccCC--CcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEecC
Confidence            3347888998887654332112    22344677  667776655 57899999988777655333   23455555655


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-------CCCeEEEEe
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------SDEYTRLYD  232 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~i~d  232 (458)
                      ..  .|+..+ +..|+.|++... .+.+.+..+...      ....|..-..+++ .++++..|       -.|.+.+|.
T Consensus       116 ~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L------~~~QIinY~~d~~-~kW~~l~gi~~~~~~v~G~mQLyS  185 (1630)
T 1xi4_A          116 LN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYS  185 (1630)
T ss_pred             CC--eeEEEc-CCeEEEeccCCCCccHHHHhcchhc------ccCeeEEeeeCCC-CCeEEEEeeccCCCcccceeeeee
Confidence            44  233333 357999999743 333344322111      2345777777887 45555432       347888888


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC---CCCcEEEEec----CCcEEEEEccCC-CCCCCCCCCCcc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS---DQSELLVSYN----DEFIYLFTQDMG-LGPNPPPSSPVS  304 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~----~~~i~i~~~~~~-~~~~~~~~~~~~  304 (458)
                      .....                .....+|.+....+...   +...+++.+.    .+++.+.++... ....++.     
T Consensus       186 ~er~~----------------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~-----  244 (1630)
T 1xi4_A          186 VDRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-----  244 (1630)
T ss_pred             ccccc----------------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc-----
Confidence            87653                22233333333222222   1122333332    247888888653 1111111     


Q ss_pred             ccccccccCCCCccccCCCCCCcccccCceeecCc-cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712          305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  383 (458)
                                               .+....+... .......++.. ++.-..++..+.-|.|++||+.++.++..-+-
T Consensus       245 -------------------------kk~~~~~~~~~~~~Dfpv~~~v-s~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          245 -------------------------KKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (1630)
T ss_pred             -------------------------cccccccCCcccccCcceEEEe-ccccCEEEEEecCceEEEEecccchhhhhccc
Confidence                                     0001111111 00112345555 77777888888999999999999988865554


Q ss_pred             CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      ...+|...+-++...=++.....|.|.--.+..
T Consensus       299 s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             cCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence            444554444443322333334555554444443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.97  E-value=0.14  Score=43.44  Aligned_cols=147  Identities=13%  Similarity=0.157  Sum_probs=72.5

Q ss_pred             EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----CC-------cEEEeecccccceee
Q 012712           75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DG-------QVRHAQILERGGVET  143 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----dg-------~i~vw~~~~~~~~~~  143 (458)
                      +++.|+.  .+..||..+++-...-...............  ++..++.|+.    ++       .+..+|..+.+....
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            3444543  4788998877643321111111222222334  7778888873    12       166778766654332


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCC-------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      ..+.........+.+  ++ .+++.|+.+       ..+.+||+.+.+-...-..+.  ...      ...++. .  ++
T Consensus        94 ~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~------~~~~~~-~--~~  159 (318)
T 2woz_A           94 PPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVY------GHNVIS-H--NG  159 (318)
T ss_dssp             SCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEE------SCEEEE-E--TT
T ss_pred             CCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--ccc------ccEEEE-E--CC
Confidence            212211111222222  34 677777754       357888888765432211110  000      112222 2  25


Q ss_pred             cEEEEecC------CCeEEEEecCCCccC
Q 012712          217 NLFAVAGS------DEYTRLYDIRKYKWD  239 (458)
Q Consensus       217 ~~l~~~~~------dg~i~i~d~~~~~~~  239 (458)
                      .+++.|+.      -..+.+||+.+.+..
T Consensus       160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             EEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             EEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            67777764      235899999887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.90  E-value=0.14  Score=51.89  Aligned_cols=205  Identities=12%  Similarity=0.116  Sum_probs=121.9

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      |++.-+|..+.+|.-. ..+++|+|+++.+.++.                     +. ...+|.-=.|-.+. .|+-.+.
T Consensus        69 dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks---------------------~~-~~e~VvfWkWis~~-~l~lVT~  124 (1630)
T 1xi4_A           69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA---------------------HT-MTDDVTFWKWISLN-TVALVTD  124 (1630)
T ss_pred             hhhccCCCcceEEEec-CCeEEEeehHHhhhhcc---------------------cc-cCCCceEEEecCCC-eeEEEcC
Confidence            5667788888888776 77899999987766643                     11 23567666776444 3444433


Q ss_pred             CCeEEEEECCCcc-eeeeeccCC----CcceeEEEEccCCCCeEEEEEc-------CCCcEEEeecccccceeeeecccc
Q 012712           82 DRRVILWDWKTER-VKLSFHSGH----NDNVFQAKIMPFTDDRSIVTCA-------ADGQVRHAQILERGGVETKLLGKH  149 (458)
Q Consensus        82 d~~i~iwd~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~l~s~~-------~dg~i~vw~~~~~~~~~~~~~~~~  149 (458)
                       ..|.-|++.... +...+ ..|    ...|..-..++  +.++++..|       -.|.+.+|.++.+..   +.+.+|
T Consensus       125 -~aVyHW~~~~~s~P~k~f-dR~~~L~~~QIinY~~d~--~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s---Q~iegh  197 (1630)
T 1xi4_A          125 -NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDA--KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---QPIEGH  197 (1630)
T ss_pred             -CeEEEeccCCCCccHHHH-hcchhcccCeeEEeeeCC--CCCeEEEEeeccCCCcccceeeeeecccccc---hhhhHh
Confidence             469999997533 32223 333    35676777777  888877543       248889998865433   236777


Q ss_pred             ccceEEEEEc--CCCCeEEEEecC---CCeEEEEeCCCC-Cccceeeec--ccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          150 QGRAHKLAIE--PGSPHVFYTCGE---DGLVQHFDLRTG-AATELFTCR--PIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       150 ~~~v~~~~~~--~~~~~~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      .+....+...  +....++..+..   .+.+++.++... .....+...  ........ ...-..++..++. -..+..
T Consensus       198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~-~~Dfpv~~~vs~k-~g~iy~  275 (1630)
T 1xi4_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA-QNDFPVAMQISEK-HDVVFL  275 (1630)
T ss_pred             HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc-ccCcceEEEeccc-cCEEEE
Confidence            7665544443  222233332222   378999988543 111111100  00000001 1223457788887 457778


Q ss_pred             ecCCCeEEEEecCCCccC
Q 012712          222 AGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~~~~  239 (458)
                      -+.-|.+++||+.++...
T Consensus       276 itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EecCceEEEEecccchhh
Confidence            889999999999998754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.88  E-value=0.16  Score=42.79  Aligned_cols=189  Identities=10%  Similarity=0.055  Sum_probs=95.0

Q ss_pred             CCCEEEEecCC----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----C-----CcEEEeecccc
Q 012712           72 DGDILISGSDD----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----D-----GQVRHAQILER  138 (458)
Q Consensus        72 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----d-----g~i~vw~~~~~  138 (458)
                      ++.+++.|+.+    ..+.+||..+.+-...-.......-.+++. .  ++.+++.|+.    +     ..+.++|..+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            56677777632    368899987765322110011111112222 2  6777777775    2     46788888776


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      +......+.........+.+  ++ .+++.|+.+     ..+.+||+.+.+-...-..+.  ...      ...++.+  
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~------~~~~~~~--  167 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT--RRI------GVGVAVL--  167 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCCSS--CCB------SCEEEEE--
T ss_pred             eEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc--ccc------ceEEEEE--
Confidence            54332222221122222222  44 677777644     358889988765332211110  011      1122223  


Q ss_pred             CCCcEEEEecCC-----CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C-----C
Q 012712          214 RNANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D-----E  282 (458)
Q Consensus       214 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-----~  282 (458)
                      + +.+++.|+.+     ..+.+||+.+.+......+            .. .......+.+  ++++++.|+ +     .
T Consensus       168 ~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------------p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~  231 (308)
T 1zgk_A          168 N-RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM------------NT-IRSGAGVCVL--HNCIYAAGGYDGQDQLN  231 (308)
T ss_dssp             T-TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC------------SS-CCBSCEEEEE--TTEEEEECCBCSSSBCC
T ss_pred             C-CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC------------CC-ccccceEEEE--CCEEEEEeCCCCCCccc
Confidence            2 5677777754     4588999987765322111            00 0111122222  566766665 2     3


Q ss_pred             cEEEEEccCC
Q 012712          283 FIYLFTQDMG  292 (458)
Q Consensus       283 ~i~i~~~~~~  292 (458)
                      .+.+||+.+.
T Consensus       232 ~v~~yd~~~~  241 (308)
T 1zgk_A          232 SVERYDVETE  241 (308)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEEeCCCC
Confidence            5888888763

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.87  E-value=0.19  Score=43.42  Aligned_cols=115  Identities=14%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             ceEEEEEecCCC-EEEEecCCCeEEEEECCCccee---eee---ccCCCcceeEEEEccCCC---CeEEEEEc-C-----
Q 012712           63 CVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVK---LSF---HSGHNDNVFQAKIMPFTD---DRSIVTCA-A-----  126 (458)
Q Consensus        63 ~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~---~~~---~~~~~~~i~~~~~~~~~~---~~~l~s~~-~-----  126 (458)
                      .-..|+|.|+|+ ++++ ...+.|++++.+ +...   ..+   ..........++++|  +   +..|..+. .     
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP--DFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT--THHHHCEEEEEEEEECSSS
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC--CCCCCCEEEEEEeCCCCCC
Confidence            457999999998 6654 557899999854 3321   111   112234578999998  6   44444432 2     


Q ss_pred             --CCcEEEeeccccc----ceee--eecc---ccccceEEEEEcCCCCeEEEEecC-------------CCeEEEEeCCC
Q 012712          127 --DGQVRHAQILERG----GVET--KLLG---KHQGRAHKLAIEPGSPHVFYTCGE-------------DGLVQHFDLRT  182 (458)
Q Consensus       127 --dg~i~vw~~~~~~----~~~~--~~~~---~~~~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~  182 (458)
                        ...|..+++....    ....  ..+.   ........++|.|++ .++++.+.             .|.|.-++...
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence              1245556654321    1110  0111   111224579999999 66666543             24677777653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.62  E-value=0.26  Score=42.56  Aligned_cols=66  Identities=9%  Similarity=0.080  Sum_probs=35.5

Q ss_pred             CCeEEEEEcCC-CcEEEeeccc--ccceeeeecc-ccccceEEEEEcCCCCeEEEEecC-C---------CeEEEEeCCC
Q 012712          117 DDRSIVTCAAD-GQVRHAQILE--RGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGE-D---------GLVQHFDLRT  182 (458)
Q Consensus       117 ~~~~l~s~~~d-g~i~vw~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-d---------g~i~iwd~~~  182 (458)
                      ++.+++.|+.+ ..+.++|..+  .+......+. ........+.+  ++ .+++.|+. +         ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DG-NLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TT-EEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CC-EEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            67777777653 4688888764  3322211122 11111122222  34 67777776 2         4688999887


Q ss_pred             CCc
Q 012712          183 GAA  185 (458)
Q Consensus       183 ~~~  185 (458)
                      .+-
T Consensus        96 ~~W   98 (357)
T 2uvk_A           96 NSW   98 (357)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.52  E-value=0.42  Score=42.82  Aligned_cols=110  Identities=13%  Similarity=0.219  Sum_probs=59.9

Q ss_pred             cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc------cccceEEEEEcCC---CCeEEEEecC----
Q 012712          105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------HQGRAHKLAIEPG---SPHVFYTCGE----  171 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~~l~s~~~----  171 (458)
                      .....|+|.|  +|+++++-...+.|++++..++.......+..      .......|+|+|+   +..+.++-+.    
T Consensus        27 ~~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcC--CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            3567999999  99877776554568888765443322111221      2356779999995   4355555432    


Q ss_pred             --------CCeEEEEeCCCCC--c---cceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          172 --------DGLVQHFDLRTGA--A---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       172 --------dg~i~iwd~~~~~--~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                              ...|.-+++....  .   ...+...+  ...    ......|+|.||+ .+.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--~~~----~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--SSK----DHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--CCS----SCCEEEEEECTTS-CEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC--CCC----CCCCCeEeECCCC-eEEEEEC
Confidence                    2356666654321  1   11111111  111    1236889999984 5555433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.36  Score=41.06  Aligned_cols=202  Identities=10%  Similarity=-0.069  Sum_probs=101.1

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEE---EecCCCEEEEe-cCCCeEE
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVS---FNTDGDILISG-SDDRRVI   86 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~s~~~~~l~s~-~~d~~i~   86 (458)
                      .+++.++.||.|.-.|.++|+...+....                    ...++....   ...++..++.. ..||.|.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--------------------~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~   70 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--------------------NFQPLIEIQEPSRLETYETLIIEPFGDGNIY   70 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG--------------------GSCCSEECCCSCTTTSSEEEEECCSTTTEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC--------------------ccCCcEEecCCccccCCcEEEEEECCCCEEE
Confidence            46888999999999999999887551110                    001111100   00133334433 5789999


Q ss_pred             EEECCCcceeeeeccC---CCcceeEEEEccCC-------CCeEEEEEcCCCcEEEeecccccceeeeeccccccc----
Q 012712           87 LWDWKTERVKLSFHSG---HNDNVFQAKIMPFT-------DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR----  152 (458)
Q Consensus        87 iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~-------~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~----  152 (458)
                      .++..+|.....+...   ...++.. .=.|.-       .+..+++++.+|.+...|+.+++.+...........    
T Consensus        71 a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  149 (339)
T 2be1_A           71 YFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQ  149 (339)
T ss_dssp             EEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----
T ss_pred             EEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccc
Confidence            9998887554433111   1112221 111111       456888999999999999999988766433221111    


Q ss_pred             -eEEEEEc---C-CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce-EEEEECCCCCcEEEEecCCC
Q 012712          153 -AHKLAIE---P-GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDE  226 (458)
Q Consensus       153 -v~~~~~~---~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg  226 (458)
                       ..|....   . .....++.+..+..+.+.+ ++++ ...+.........   ....+ ..-..+.+ +.+ +.++.||
T Consensus       150 ~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~~~~~s~D-g~~-~~~~~dg  222 (339)
T 2be1_A          150 SVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLALQNTFSKD-GMC-IAPFRDK  222 (339)
T ss_dssp             ---------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHTTCSSCSS-SCC-EEEETTT
T ss_pred             ccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccc---cccccccccccccC-CcE-EEECCCC
Confidence             0111110   0 1113566677777777766 4453 2222111000000   00000 00001122 334 4467888


Q ss_pred             eEEEEecCCCccCC
Q 012712          227 YTRLYDIRKYKWDG  240 (458)
Q Consensus       227 ~i~i~d~~~~~~~~  240 (458)
                      .|.-+|..+++..-
T Consensus       223 ~v~A~d~~~G~~~W  236 (339)
T 2be1_A          223 SLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEECSTTCCEEE
T ss_pred             EEEEEECCCCcEEE
Confidence            88888888776543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.44  E-value=0.35  Score=40.95  Aligned_cols=153  Identities=13%  Similarity=0.151  Sum_probs=76.3

Q ss_pred             ecCCCEEEEecC----CC-------eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-------CcEE
Q 012712           70 NTDGDILISGSD----DR-------RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-------GQVR  131 (458)
Q Consensus        70 s~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-------g~i~  131 (458)
                      ..++.+++.|+.    ++       .+.+||..+.+-...-.......-.+++..   ++..++.|+.+       ..+.
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEE
Confidence            456778888873    11       277788876653221100111111222222   67788887754       2477


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC------CeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      ++|..+.+......+....... +++. .++ .+++.|+.+      ..+.+||+.+.+-...-..+  ....      .
T Consensus       131 ~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~------~  199 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLPIKVYGH-NVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK--TPRS------M  199 (318)
T ss_dssp             EEETTTTEEEEECCCSSCEESC-EEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS--SCCB------S
T ss_pred             EEeCCCCCEeECCCCCCccccc-EEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC--CCcc------c
Confidence            7888766543322122111111 2222 344 677777642      35889998876533221111  0010      1


Q ss_pred             eEEEEECCCCCcEEEEecCC-----CeEEEEecCCCccC
Q 012712          206 LNAIAIDPRNANLFAVAGSD-----EYTRLYDIRKYKWD  239 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~  239 (458)
                      ..++.+   ++.+++.|+.+     ..+.+||+.+.+..
T Consensus       200 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          200 FGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             CEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             ceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            122222   24677777643     35778998877643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.40  E-value=0.71  Score=44.09  Aligned_cols=155  Identities=12%  Similarity=0.121  Sum_probs=80.5

Q ss_pred             CCeEEEEEcCC----CcEEEeecccccceeee-ec----cccccceEEEEEcC-CCCeEEEEecCCC------eEEEEeC
Q 012712          117 DDRSIVTCAAD----GQVRHAQILERGGVETK-LL----GKHQGRAHKLAIEP-GSPHVFYTCGEDG------LVQHFDL  180 (458)
Q Consensus       117 ~~~~l~s~~~d----g~i~vw~~~~~~~~~~~-~~----~~~~~~v~~~~~~~-~~~~~l~s~~~dg------~i~iwd~  180 (458)
                      ++..++.|+.+    ..+.+||..++...... ..    ......-.+++..+ ++ .+++.|+.++      .+.+||+
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeC
Confidence            67777787753    45788888776544322 10    01111122333333 55 6778877543      5788888


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG  258 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (458)
                      .+.+-...-..+.        .... .+++...+ +.+++.|+.++  .+.+||..+.+.......          ....
T Consensus       476 ~t~~W~~~~~~p~--------~R~~-h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~----------g~~p  535 (695)
T 2zwa_A          476 KTREWSMIKSLSH--------TRFR-HSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPK----------DEFF  535 (695)
T ss_dssp             TTTEEEECCCCSB--------CCBS-CEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCS----------SGGG
T ss_pred             CCCcEEECCCCCC--------Cccc-ceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCC----------CCCC
Confidence            8764332211110        0011 22233223 57888887654  699999988765322110          0011


Q ss_pred             ccccceeEEEeCCC-CcEEEEecC--------CcEEEEEccCC
Q 012712          259 DEQVGITGLAFSDQ-SELLVSYND--------EFIYLFTQDMG  292 (458)
Q Consensus       259 ~~~~~i~~~~~~~~-~~~l~~~~~--------~~i~i~~~~~~  292 (458)
                      ........+.+..+ +++++.|+.        +.+..||+.+.
T Consensus       536 ~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          536 QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            11112233555555 667776652        24888898774

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.08  E-value=0.75  Score=41.21  Aligned_cols=106  Identities=14%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCccee--eeecc-----CCCcceeEEEEccCCC---CeEEEEEcC-----
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHS-----GHNDNVFQAKIMPFTD---DRSIVTCAA-----  126 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~-----~~~~~i~~~~~~~~~~---~~~l~s~~~-----  126 (458)
                      ..-..|+|.|+|+++++-...+.|++++..++...  ..+..     ........|+|+|  +   +..|..+..     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCEEEEEEeccccC
Confidence            35579999999998877555457888876555432  22211     1245677999998  6   555554432     


Q ss_pred             --------CCcEEEeeccccc-------ceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712          127 --------DGQVRHAQILERG-------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCG  170 (458)
Q Consensus       127 --------dg~i~vw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  170 (458)
                              ...|.-++.....       .+....-.........|+|.|+| +++++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                    1245555543221       11110011112346889999999 5666544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.00  E-value=0.67  Score=39.98  Aligned_cols=95  Identities=12%  Similarity=0.076  Sum_probs=47.3

Q ss_pred             CCCEEEEecCC-CeEEEEECCC--cce--eeeeccCCCcceeEEEEccCCCCeEEEEEcC-C---------CcEEEeecc
Q 012712           72 DGDILISGSDD-RRVILWDWKT--ERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-D---------GQVRHAQIL  136 (458)
Q Consensus        72 ~~~~l~s~~~d-~~i~iwd~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d---------g~i~vw~~~  136 (458)
                      ++++++.|+.+ ..+.++|..+  .+-  +..+ ......-.+++..   ++.+++.|+. +         ..+.+||..
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~-p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAF-PGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCC-TTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCC-CCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            56666777643 4688889864  221  1111 1011111222222   6778888776 2         468888887


Q ss_pred             cccceeeeeccccccceEEEEEcCCCCeEEEEecCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED  172 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  172 (458)
                      +.+.............-.+++. .++ .+++.|+.+
T Consensus        95 ~~~W~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~  128 (357)
T 2uvk_A           95 TNSWVKLMSHAPMGMAGHVTFV-HNG-KAYVTGGVN  128 (357)
T ss_dssp             TTEEEECSCCCSSCCSSEEEEE-ETT-EEEEEECCC
T ss_pred             CCcEEECCCCCCcccccceEEE-ECC-EEEEEeCcC
Confidence            7654432222201111122222 345 677888754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.28  Score=41.69  Aligned_cols=117  Identities=11%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccC-CCCeEEEEE-cCCCcEEEeecccccceeeeecccc--
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTC-AADGQVRHAQILERGGVETKLLGKH--  149 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~--  149 (458)
                      .+++.++.||.|.-.|.++|+...++......++....-... .++..++.. ..||.|..++..++..........-  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            467888899999999999998888774331122222110000 033444443 5789998888877644332222111  


Q ss_pred             ccceEE---EEE-cC----CCCeEEEEecCCCeEEEEeCCCCCccceeee
Q 012712          150 QGRAHK---LAI-EP----GSPHVFYTCGEDGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       150 ~~~v~~---~~~-~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  191 (458)
                      ..++..   ... .+    .+ ..+++++.+|.+...|+++|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CC-EEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            111111   000 00    23 5689999999999999999998877754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.84  E-value=0.68  Score=38.80  Aligned_cols=138  Identities=9%  Similarity=0.066  Sum_probs=71.8

Q ss_pred             ecCCCEEEEec--CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC--------------CcEEEe
Q 012712           70 NTDGDILISGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--------------GQVRHA  133 (458)
Q Consensus        70 s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--------------g~i~vw  133 (458)
                      +++|.+|.-..  .++.|...+.+... ...+ ..  ..  +--+++  ++.+|+.+...              ..|+..
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l-~~--~~--~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i   93 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKL-SN--DT--AMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRI   93 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEE-EE--EE--EEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEc-cC--Cc--eeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence            45666666543  34666666755433 3333 11  12  334567  88888877543              345666


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEe---cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC---GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      ++...+...   +..  .  ....+++++..+.++-   .....|...++...... .+..          +  .+  .+
T Consensus        94 ~~dg~~~~~---l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~----------~--~~--~~  151 (302)
T 3s25_A           94 KRNGHGSTV---LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN----------H--YL--FT  151 (302)
T ss_dssp             ETTSCCCEE---EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEES----------S--CC--CC
T ss_pred             eCCCCcceE---eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeC----------C--Cc--eE
Confidence            665544322   211  1  1236677775555554   33456666677644432 2221          1  11  34


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                      ++|+++.+..+......|...++....
T Consensus       152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          152 CNTSDRYFYYNNPKNGQLYRYDTASQS  178 (302)
T ss_dssp             SEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred             eeEECCEEEEEeCCCceEEEEECCCCC
Confidence            566654555554446778887776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.71  E-value=1.5  Score=41.85  Aligned_cols=157  Identities=15%  Similarity=0.106  Sum_probs=83.3

Q ss_pred             CCCEEEEecCC------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--cEEEeecccccceee
Q 012712           72 DGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERGGVET  143 (458)
Q Consensus        72 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~~~~~~  143 (458)
                      ++++++.||.+      ..+.+||..+.+-...-.......-.+++...  ++..++.|+.++  .+.+||..+......
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~  528 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDV  528 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence            67777777753      35788898875432211001111112333334  778888887654  688999887654332


Q ss_pred             ee---ccccccceEEEEEcCCCCeEEEEecC--C-----CeEEEEeCCCCCc-----cceeeecccCCCCcceeecceEE
Q 012712          144 KL---LGKHQGRAHKLAIEPGSPHVFYTCGE--D-----GLVQHFDLRTGAA-----TELFTCRPIDDRRNYMTVVNLNA  208 (458)
Q Consensus       144 ~~---~~~~~~~v~~~~~~~~~~~~l~s~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~  208 (458)
                      ..   .........++.+..+...+++.|+.  +     ..+..||+.+...     -..+...+.....      ...+
T Consensus       529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~------~~~~  602 (695)
T 2zwa_A          529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY------GSQI  602 (695)
T ss_dssp             CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB------SCEE
T ss_pred             cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc------cceE
Confidence            21   11111222335556552377888876  2     4588999988772     1111111111111      1122


Q ss_pred             EEECCCCCcEEEEecCC--------CeEEEEecCCCcc
Q 012712          209 IAIDPRNANLFAVAGSD--------EYTRLYDIRKYKW  238 (458)
Q Consensus       209 ~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~  238 (458)
                      +.+. + +.+++.|+.+        ..+.+||+.+.+.
T Consensus       603 ~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          603 KYIT-P-RKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             EEEE-T-TEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             EEeC-C-CEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            3332 2 4677777743        4588888887764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.22  E-value=1.6  Score=39.08  Aligned_cols=31  Identities=6%  Similarity=0.102  Sum_probs=22.5

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR  181 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  181 (458)
                      .....|+|.|++...++.+...|.|++++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            3557899999984234555678999999754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=94.63  E-value=2  Score=37.14  Aligned_cols=193  Identities=11%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             eEEEEeCCCC--CccceeeecccCCCCcceeecceEEEEEC---CC---CCcEEEEe-cCCCeEEEEecCCCccCCCccC
Q 012712          174 LVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAID---PR---NANLFAVA-GSDEYTRLYDIRKYKWDGSTDF  244 (458)
Q Consensus       174 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~---~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~  244 (458)
                      .|.+||+.+.  +.++.+..+.....    ....+..+.+.   |.   +..+++.+ ...+.|.++|+.+++.-....-
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~----~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~  199 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVE----KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP  199 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCC----CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcc----cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC
Confidence            4678888888  77777766433222    22356777777   22   12344433 3467899999998764222100


Q ss_pred             -CCCCCCcCCCcccccc----ccceeEEEeCCC----CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712          245 -GQPADYFCPPNLIGDE----QVGITGLAFSDQ----SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD  315 (458)
Q Consensus       245 -~~~~~~~~~~~~~~~~----~~~i~~~~~~~~----~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (458)
                       -.+...  ......+.    ...+..|+++|+    ++.|....-.+-++|.+.+......-                 
T Consensus       200 ~~~pd~~--~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~-----------------  260 (381)
T 3q6k_A          200 TFKAERP--TKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG-----------------  260 (381)
T ss_dssp             GGSCCSC--EEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT-----------------
T ss_pred             CCccccC--cceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc-----------------
Confidence             000000  00001111    247889999998    67777666554455555432111000                 


Q ss_pred             CccccCCCCCCcccccCceeecCccc-eeeeeEEEEec-CCCcEEEEecCCCeEEEEEecC-C---eEEEEeec--CCce
Q 012712          316 HTSAASPSTANTDVRIAPQVYKGHRN-CVTVKGVNFFG-PKCEYVVSGSDCGRIFIWKKKG-G---ELIRVIEA--DRHV  387 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~--~~~~  387 (458)
                                   ....++.+ +... ......+++ + .+|.++++--..+.|..|+..+ .   +....+..  .-..
T Consensus       261 -------------~~~~v~~~-G~kg~~s~~~~~~~-D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~  325 (381)
T 3q6k_A          261 -------------GKLNPELL-GNRGKYNDAIALAY-DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF  325 (381)
T ss_dssp             -------------CCCCCEEE-EECCTTCCEEEEEE-CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred             -------------hhhceEEe-eecCCCCCcceEEE-eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence                         00111111 1111 011234455 6 6787777777889999999864 1   12233321  1224


Q ss_pred             eeEEEecCCCCeEEEee
Q 012712          388 VNCIEPHPHSTVLASSG  404 (458)
Q Consensus       388 v~~~~~s~~~~~l~s~~  404 (458)
                      +..+.+.++|.+.+..+
T Consensus       326 pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          326 GTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EEEEEECTTSCEEEEEC
T ss_pred             cCeEEECCCCeEEEEEC
Confidence            67777777776555543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.06  E-value=7.4  Score=33.97  Aligned_cols=155  Identities=12%  Similarity=0.014  Sum_probs=67.6

Q ss_pred             CEEEEecCCCeEEEEECCC-cceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCC--cEEEeecccc-cceeeee---
Q 012712           74 DILISGSDDRRVILWDWKT-ERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILER-GGVETKL---  145 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~-~~~~~~~---  145 (458)
                      ..|..|...| +.+++... +..-... .......|.+|++.|. +...|..+...|  .-.||....+ +.-....   
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~-~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPR-EPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSS-STTCEEEEEEC--CCEEEEEESSTTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCC-CCCeEEEEecCCCCCccEEEeCCCCCCceECCccc
Confidence            3566677666 55555332 2211111 0122457999999873 234444444444  0123333222 2111110   


Q ss_pred             -ccc--------cccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCC---------Ccceeecce
Q 012712          146 -LGK--------HQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR---------RNYMTVVNL  206 (458)
Q Consensus       146 -~~~--------~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~v  206 (458)
                       +..        ....|.++++.|.+ +..++.++..+.|...+- .++.-..+........         .+......+
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence             110        11257788998732 344666666665554432 2222111110000000         000012357


Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEE
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      .+|.++|.+...++.+..++.|...
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s  204 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFES  204 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEE
Confidence            8899998544555556555545443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.32  E-value=6.8  Score=32.32  Aligned_cols=248  Identities=13%  Similarity=0.022  Sum_probs=131.5

Q ss_pred             CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712          104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG  183 (458)
Q Consensus       104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  183 (458)
                      ...|..++...   ...++. . ||.+..|-......+..  .......|..++.....  .++. . ||.|..|-....
T Consensus        23 ~~~i~~ia~G~---~h~~~l-~-~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~   91 (282)
T 3qhy_B           23 QSGVDAIAGGY---FHGLAL-K-GGKVLGWGANLNGQLTM--PAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNED   91 (282)
T ss_dssp             SSSCCEEEECS---SEEEEE-E-TTEEEEEECCSSSTTSC--CGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTT
T ss_pred             cCCCcEEEeCC---CeEEEE-E-CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCC
Confidence            34677887753   334444 4 89999998765443321  11123467778776653  3444 4 899999976543


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG  263 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      .....   +..       ....|..++....   ..+.-. +|.|+.|-........               ........
T Consensus        92 Gqlg~---P~~-------~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg---------------~~~~~~~~  142 (282)
T 3qhy_B           92 GQTTV---PAE-------ARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTT---------------VPAEAQSG  142 (282)
T ss_dssp             STTCC---CGG-------GSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTS---------------CCGGGGSS
T ss_pred             CCCCC---Ccc-------cCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCC---------------CCccCCCC
Confidence            22211   000       1125777777653   333334 9999999776533211               01112345


Q ss_pred             eeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712          264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV  343 (458)
Q Consensus       264 i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (458)
                      |..++...+..++++  ++.++.|-.........                                   ....     ..
T Consensus       143 i~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~-----------------------------------p~~~-----~~  180 (282)
T 3qhy_B          143 VTALDGGVYTALAVK--NGGVIAWGDNYFGQTTV-----------------------------------PAEA-----QS  180 (282)
T ss_dssp             EEEEEECSSEEEEEE--TTEEEEEECCTTSTTSC-----------------------------------CGGG-----GS
T ss_pred             eEEEEcccCEEEEEE--CCEEEEecCCCCCCCCC-----------------------------------ceec-----CC
Confidence            777766554433333  68899997654211100                                   0000     01


Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP  423 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~  423 (458)
                      .|..++. ..+ ..++.  .||.|+.|-......+..-......|..++-..... ++..  ||.|..|-........+ 
T Consensus       181 ~v~~i~~-G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~gq~~v-  252 (282)
T 3qhy_B          181 GVDDVAG-GIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK--NGKVIAWGSSRTAPSSV-  252 (282)
T ss_dssp             SEEEEEE-CSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCCCCGGG-
T ss_pred             CeEEEEe-cCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCCccccC-
Confidence            2666665 332 33444  599999997654322211111123466676544333 3333  89999997665544433 


Q ss_pred             cccccEEEEEEecCCcEEEe
Q 012712          424 TNIEQVCFSIYSADYWWSKS  443 (458)
Q Consensus       424 ~~~~~v~~~~~s~d~~~l~s  443 (458)
                        ...|.+++-...-...++
T Consensus       253 --~~~v~~iaaG~~h~~al~  270 (282)
T 3qhy_B          253 --QSGVSSIEAGPNAAYALK  270 (282)
T ss_dssp             --SSCEEEEEECSSCEEEEE
T ss_pred             --CCCcEEEEECcCeEEEEe
Confidence              235777776665555444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.19  E-value=11  Score=34.46  Aligned_cols=114  Identities=6%  Similarity=-0.037  Sum_probs=64.9

Q ss_pred             cceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          262 VGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       262 ~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      .....+..+|||++++.++  +.++.+++...-.....-.                        ..+.. .........-
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k------------------------~~~~~-~~~~ae~e~G  377 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK------------------------LADPR-DVIVGEPELG  377 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC------------------------CSCGG-GGEEECCBCC
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc------------------------ccCcc-cceEeeccCC
Confidence            3456788999999999888  4589999987421000000                        00000 0001111111


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC----------eEEEEeecCCceeeEE-----EecCCCCeEEEee
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----------ELIRVIEADRHVVNCI-----EPHPHSTVLASSG  404 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~s~~~~~l~s~~  404 (458)
                      .+   ....+| +++|.-..+---|..|.-|++...          ..+..+.-|-.+---.     .-.|||++|++..
T Consensus       378 lG---PlHt~F-d~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          378 LG---PLHTTF-DGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             SC---EEEEEE-CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             Cc---ccEEEE-CCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            12   456777 999966666678999999999653          4555565554322111     2257788887763

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.05  E-value=16  Score=34.86  Aligned_cols=205  Identities=9%  Similarity=-0.024  Sum_probs=100.3

Q ss_pred             eEEEE-EecCCCEEEEe----cCC-CeEEEEECCCcceeeeeccC-CCc------ceeEEEEccCCCCeEEEEE------
Q 012712           64 VNTVS-FNTDGDILISG----SDD-RRVILWDWKTERVKLSFHSG-HND------NVFQAKIMPFTDDRSIVTC------  124 (458)
Q Consensus        64 v~~~~-~s~~~~~l~s~----~~d-~~i~iwd~~~~~~~~~~~~~-~~~------~i~~~~~~~~~~~~~l~s~------  124 (458)
                      ...+. ++|++++++.+    +.| ..++++|+.+++.+..-... -+.      ....++|..  +...+++.      
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d--~~~~~~~~~~~~~~  208 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN--KDTIIFNLVLHKNE  208 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE--TTEEEECCCCSTTC
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC--CCEEEEEeCCCCCC
Confidence            34455 88999887753    333 58999999998876432110 000      123458875  55555532      


Q ss_pred             ----cCCCcEEEeecccccceeeeeccccccce-EEEEEcCCCCe----EEEEecC---CCeEEEEeCCCCCc-cceeee
Q 012712          125 ----AADGQVRHAQILERGGVETKLLGKHQGRA-HKLAIEPGSPH----VFYTCGE---DGLVQHFDLRTGAA-TELFTC  191 (458)
Q Consensus       125 ----~~dg~i~vw~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~l~s~~~---dg~i~iwd~~~~~~-~~~~~~  191 (458)
                          +....|+.|.+-+........+.+....+ .....++++..    .+++.+.   ...+.+.+...... ...+..
T Consensus       209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~  288 (711)
T 4hvt_A          209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM  288 (711)
T ss_dssp             BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred             cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence                12256888887665432222233322222 33455666642    3554432   24566666553221 111111


Q ss_pred             cccCCCCcceeecceEEEEECCCCCcEEEEe----------cCCCeEEEEecCCCccCCCccCCCCCCCcCCCc-ccccc
Q 012712          192 RPIDDRRNYMTVVNLNAIAIDPRNANLFAVA----------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN-LIGDE  260 (458)
Q Consensus       192 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  260 (458)
                      +         .  .. .+..+++ +.+++..          ...+.|...|+.+......       ....... +....
T Consensus       289 ~---------~--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~  348 (711)
T 4hvt_A          289 P---------S--DA-TLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTES-------DKTSLKILFTPTA  348 (711)
T ss_dssp             C---------T--TC-EEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGG-------GCTTCEEEECCCT
T ss_pred             C---------C--cc-eEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCccccccc-------ccccceEEECCCC
Confidence            1         0  01 1122233 3444422          2466788888876421000       0000011 22333


Q ss_pred             ccceeEEEeCCCCcEEEEec-CC--cEEEEEccC
Q 012712          261 QVGITGLAFSDQSELLVSYN-DE--FIYLFTQDM  291 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~-~~--~i~i~~~~~  291 (458)
                      ...+..+.+..+. ++++.. ++  .+.++++.+
T Consensus       349 ~~~l~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~  381 (711)
T 4hvt_A          349 NEVFNFISTTKDR-VFLATYDNVVAKVVTFTLEN  381 (711)
T ss_dssp             TEEEEEEEECSSC-EEEEEEETTEEEEEEECEET
T ss_pred             CCeEEEEEEECCE-EEEEEEECCEEEEEEEECCC
Confidence            5567888998774 454444 44  477887654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.18  E-value=14  Score=33.08  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=57.7

Q ss_pred             ceEEEEEecCCC-EEEEecCCCeEEEEECCCcc---eeeeec----c----CCCcceeEEEEccCCC----CeEEEEEcC
Q 012712           63 CVNTVSFNTDGD-ILISGSDDRRVILWDWKTER---VKLSFH----S----GHNDNVFQAKIMPFTD----DRSIVTCAA  126 (458)
Q Consensus        63 ~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~---~~~~~~----~----~~~~~i~~~~~~~~~~----~~~l~s~~~  126 (458)
                      .-+.|+|.|||. .|+.+...|.|++++.....   .+..+.    .    ........|+|+|  +    +.+.++-+.
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P--~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHP--NYKKNGKLYVSYTT   92 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECT--THHHHCEEEEEEEE
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCC--CCcCCCEEEEEEeC
Confidence            456899999995 44445678999999754321   112211    1    1145678999998  6    444443322


Q ss_pred             --C----------CcEEEeecccc----------cceeeeeccccccceEEEEEcCCCCeEEEEecC
Q 012712          127 --D----------GQVRHAQILER----------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE  171 (458)
Q Consensus       127 --d----------g~i~vw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  171 (458)
                        +          ..|.-|.+...          +.+..............|+|.||+ +++++.+.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCC
Confidence              1          13444555321          111111111222346789999999 56666554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.52  E-value=9.9  Score=37.83  Aligned_cols=38  Identities=16%  Similarity=0.188  Sum_probs=33.0

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF   99 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~   99 (458)
                      ..|.+++..++..++++-+.|+++|+|++.+++++...
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35778888888899999999999999999999887654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.05  E-value=15  Score=32.05  Aligned_cols=80  Identities=13%  Similarity=0.117  Sum_probs=37.6

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc-CCCC--cceeecceEEEEECCCCCcEEEEecCCCe
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRR--NYMTVVNLNAIAIDPRNANLFAVAGSDEY  227 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  227 (458)
                      ..+.+|.++|..+..++.+..++.|...+ ..++.-..+..... ....  .......+.++.++|.++..++++...+ 
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-  254 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-  254 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence            35788999985433445554445444432 22222111110000 0000  0000124788999987556777776544 


Q ss_pred             EEEEe
Q 012712          228 TRLYD  232 (458)
Q Consensus       228 i~i~d  232 (458)
                      |...+
T Consensus       255 l~~s~  259 (394)
T 3b7f_A          255 IYRMD  259 (394)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            54443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.97  E-value=0.91  Score=41.11  Aligned_cols=78  Identities=8%  Similarity=0.029  Sum_probs=53.3

Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc---------cceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA---------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      .....+..+|+|.++++++-.+.++.++|++....         .........       -.......+|.++ ++-..+
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-------~GlGPlHt~Fd~~-G~aYTt  394 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-------LGLGPLHTTFDGR-GNAYTT  394 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-------CCSCEEEEEECSS-SEEEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-------CCCcccEEEECCC-CceEee
Confidence            34567889999987777788889999999874211         111111111       1224577899998 566677


Q ss_pred             ecCCCeEEEEecCCC
Q 012712          222 AGSDEYTRLYDIRKY  236 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~  236 (458)
                      .--|..|.-|++...
T Consensus       395 lfidSqvvkWni~~a  409 (638)
T 3sbq_A          395 LFIDSQVVKWNMEEA  409 (638)
T ss_dssp             ETTTTEEEEEEHHHH
T ss_pred             eeecceEEEEeccHH
Confidence            779999999999753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.16  E-value=29  Score=34.58  Aligned_cols=37  Identities=14%  Similarity=0.053  Sum_probs=32.3

Q ss_pred             eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI  381 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  381 (458)
                      .+.+++. .++..++++-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~-~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEE-ETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEee-cCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            3667776 788899999999999999999999998875

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=82.80  E-value=19  Score=29.66  Aligned_cols=183  Identities=14%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712           63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE  142 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  142 (458)
                      .|..++.... ..++. . ||.|..|-......+- +.......|..++...   ...++. . ||.|..|-......+.
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg-~p~~~~~~i~~ia~G~---~hs~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGN---YHSLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTS-CCGGGGSCCCEEEECS---SEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCC-CCccCCCCEEEEEeCC---CEEEEE-E-CCEEEEeeCCCCCCCC
Confidence            4666665432 22333 4 7888888754332211 1112234677777753   334444 4 8999999866543322


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                      .  ...-...|..++..... . ++ -. ||.|+.|-........... .         ....|..++....  ..++. 
T Consensus        96 ~--P~~~~~~v~~ia~G~~h-s-~a-l~-~G~v~~wG~n~~gqlg~~~-~---------~~~~i~~i~~G~~--~~~~l-  156 (282)
T 3qhy_B           96 V--PAEARSGVDAIAAGAWA-S-YA-LK-DGKVIAWGDDSDGQTTVPA-E---------AQSGVTALDGGVY--TALAV-  156 (282)
T ss_dssp             C--CGGGSSSEEEEEEETTE-E-EE-EE-TTEEEEEECCTTSTTSCCG-G---------GGSSEEEEEECSS--EEEEE-
T ss_pred             C--CcccCCCeEEEECcCCE-E-EE-Ee-CCeEEEecCCCCCcCCCCc-c---------CCCCeEEEEcccC--EEEEE-
Confidence            1  11112467777776654 2 33 33 8999999765432221100 0         2234777776543  33333 


Q ss_pred             cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712          223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~  291 (458)
                      . ||.|+.|-.........     |          ......|..++...+..+++  .++.++.|-...
T Consensus       157 ~-~G~v~~wG~n~~gqlg~-----p----------~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          157 K-NGGVIAWGDNYFGQTTV-----P----------AEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             E-TTEEEEEECCTTSTTSC-----C----------GGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred             E-CCEEEEecCCCCCCCCC-----c----------eecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence            3 79999997765432210     1          11134577777655544433  678899997654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=82.18  E-value=36  Score=32.52  Aligned_cols=70  Identities=4%  Similarity=0.045  Sum_probs=42.2

Q ss_pred             eeeEEEEecCCCcEEEEecCCC--eEEEEEecCCe-EEEE-eecC-CceeeEEEecCCCCeEE-Eee---cCCcEEEecC
Q 012712          344 TVKGVNFFGPKCEYVVSGSDCG--RIFIWKKKGGE-LIRV-IEAD-RHVVNCIEPHPHSTVLA-SSG---IESDIKILTP  414 (458)
Q Consensus       344 ~i~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~-~~~~-~~~~-~~~v~~~~~s~~~~~l~-s~~---~d~~i~iw~~  414 (458)
                      .+..+.+ ..+ .++++...++  .++++++.+++ .... +... .+.+.....++++..++ +.+   .-+.+..+++
T Consensus       351 ~l~~~~~-~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~  428 (711)
T 4hvt_A          351 VFNFIST-TKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK  428 (711)
T ss_dssp             EEEEEEE-CSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             eEEEEEE-ECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence            5778887 654 5667777776  46777777775 2333 3221 24566667777776443 333   2357888887


Q ss_pred             C
Q 012712          415 N  415 (458)
Q Consensus       415 ~  415 (458)
                      .
T Consensus       429 ~  429 (711)
T 4hvt_A          429 T  429 (711)
T ss_dssp             T
T ss_pred             C
Confidence            6

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d2ebsa1	427	b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-s	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (214), Expect = 1e-19
 Identities = 51/362 (14%), Positives = 112/362 (30%), Gaps = 64/362 (17%)

Query: 56  KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
            L  HR  V  V F+    +++S S+D  + +WD++T   + +   GH D+V        
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS 70

Query: 116 TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175
               +  +     ++   Q  E                        +     +   D  +
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTM-----HGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR- 234
           + ++++TG   + FT      R                ++  L A   +D+  R++ +  
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPN-----------QDGTLIASCSNDQTVRVWVVAT 174

Query: 235 ---KYKWDGSTDFGQPADYFCPPN--LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289
              K +        +   +    +   I +     T  +      LL    D+ I ++  
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234

Query: 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349
             G          + T                                GH N V      
Sbjct: 235 STG--------MCLMT------------------------------LVGHDNWVRGV--- 253

Query: 350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409
            F    ++++S +D   + +W  K    ++ + A  H V  ++ H  +  + +  ++  +
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313

Query: 410 KI 411
           K+
Sbjct: 314 KV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMP 114
             L  H   V  V F++ G  ++S +DD+ + +WD+K +R   +  + H   V       
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHK 299

Query: 115 FTDDRSIVTCAADGQVR 131
                 +VT + D  V+
Sbjct: 300 --TAPYVVTGSVDQTVK 314

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
             L+ H   V ++ F+     +++GS D+ V +W+
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.9 bits (182), Expect = 2e-15
 Identities = 50/350 (14%), Positives = 108/350 (30%), Gaps = 14/350 (4%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMP 114
             L  H   V T     + + +I+G+DD+ + ++D   ++  L    GH+  V+  K   
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALK--- 60

Query: 115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174
           +     +V+ + D  VR   I +         G +        +E  +     T   D  
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234
           +  + L   ++              +    N   + +   +              +    
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS--- 176

Query: 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294
              +D +      A   C   L G      + +   ++   + +  D  I ++  + G  
Sbjct: 177 -GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235

Query: 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354
                                 ++AA  S    D     + +  H   ++   +  F   
Sbjct: 236 MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS--AITTFYVS 293

Query: 355 CEYVVSGSDCGRIFIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASS 403
              +VSGS+  +  I+  + G+L+   I  D   +  +     + V A  
Sbjct: 294 DNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVE 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
           H       +F    +IL+SGS+++   +++ ++ ++  +      D ++      F    
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWSVN---FKGKT 336

Query: 120 SIVTCAADGQVR 131
            +     DGQ  
Sbjct: 337 LVAAVEKDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 14/119 (11%), Positives = 32/119 (26%), Gaps = 4/119 (3%)

Query: 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396
           +GH   V    +     +  YV++G+D   I ++     + +  +      V  ++    
Sbjct: 9   RGHMTSV----ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 397 STVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455
             +++ S   +                 +   V                 S    L  W
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 53  IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90
           ++A + K    + +V+F     ++ +   D +  L   
Sbjct: 316 VHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (170), Expect = 9e-14
 Identities = 49/385 (12%), Positives = 101/385 (26%), Gaps = 55/385 (14%)

Query: 36  NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV 95
           N AL R    +L   L        H   V  V F+ DG+ L +G +     ++      +
Sbjct: 44  NPALPREIDVELHKSLD-------HTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSL 95

Query: 96  --KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
             +LS  S  N +               +            +          +   + R 
Sbjct: 96  VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRK 154

Query: 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213
             + ++     ++         +           ++  R             +  +A+ P
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214

Query: 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS 273
            +    A    D   R++D          D                 +  +  + F+   
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLD--------SENESGTGHKDSVYSVVFTRDG 266

Query: 274 ELLVS-YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332
           + +VS   D  + L+        +   +    T         D   + +           
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA----------- 315

Query: 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCI- 391
                                  EY++SGS    +  W KK G  + +++  R+ V  + 
Sbjct: 316 ------------------TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357

Query: 392 -----EPHPHSTVLASSGIESDIKI 411
                   P   V A+   +   +I
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 4e-09
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 24/192 (12%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHS------GHNDNVFQAKIM 113
             G         DG  + +GS DR V +WD +T  +     S      GH D+V+     
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263

Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK----------HQGRAHKLAIEPGSP 163
              D +S+V+ + D  V+   +                       H+     +A      
Sbjct: 264 R--DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 321

Query: 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223
           ++  +  +D  V  +D ++G    +        R + ++V   N  ++ P   N+FA   
Sbjct: 322 YIL-SGSKDRGVLFWDKKSGNPLLMLQG----HRNSVISVAVANGSSLGP-EYNVFATGS 375

Query: 224 SDEYTRLYDIRK 235
            D   R++  +K
Sbjct: 376 GDCKARIWKYKK 387

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 3e-13
 Identities = 47/355 (13%), Positives = 87/355 (24%), Gaps = 67/355 (18%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
           L  H   +  + + TD  +L+S S D ++I+WD  T     +     +  V       + 
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA---YA 106

Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176
              + V C     +     L+            +G         G       C      Q
Sbjct: 107 PSGNYVACGGLDNICSIYNLKT----------REGNVRVSRELAGHTGYLSCCRFLDDNQ 156

Query: 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236
                      L+          +              +  LF     D   +L+D+R+ 
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216

Query: 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296
                          C     G E   I  + F        +                  
Sbjct: 217 M--------------CRQTFTGHES-DINAICFFPNGNAFAT------------------ 243

Query: 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356
                           GSD  +            +            +V     F     
Sbjct: 244 ----------------GSDDATCRLFDLRADQELMTYSHDNIICGITSVS----FSKSGR 283

Query: 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
            +++G D     +W     +   V+    + V+C+        +A+   +S +KI
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
             L  H   V+ +    DG  + +GS D  + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 3e-12
 Identities = 47/353 (13%), Positives = 88/353 (24%), Gaps = 45/353 (12%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
           L  H   V T      G+ ++SGSDD  + +W   T +   +   GH   V+ +++    
Sbjct: 12  LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDNI 69

Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176
                                             G    +           +   D  ++
Sbjct: 70  IISGSTDRTLKVWNAETGECIH---------TLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236
            +D+ TG    +        R                 +         D   +++D    
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQY-------------DGRRVVSGAYDFMVKVWDPETE 167

Query: 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296
               +        Y                    D   ++    D  I ++  + G   +
Sbjct: 168 TCLHTLQGHTNRVYSLQF----------------DGIHVVSGSLDTSIRVWDVETGNCIH 211

Query: 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356
                   T     +     +  A  +    D++    +            V        
Sbjct: 212 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

Query: 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRH-----VVNCIEPHPHSTVLASSG 404
           +V++ SD G + +W  K GE IR +          VV  I       V A   
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 47/326 (14%), Positives = 100/326 (30%), Gaps = 12/326 (3%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMP 114
            +L +H G V  V +  D + +++   DR   +W  K    K +      +   +     
Sbjct: 45  HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

Query: 115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174
             + +  V   +          E      K + K             +  +      D  
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164

Query: 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234
            + F        E     P   +  +  ++  ++ +    +           ++      
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH--------GVCFSANGSRV 216

Query: 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294
            +    ST     AD       +  E + +  + F  +S L+ + +D F  LFT D   G
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG 276

Query: 295 P-NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP--QVYKGHRNCVT-VKGVNF 350
             +      V  +S    + +          A+++   A    +   H+N V+ +  ++ 
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336

Query: 351 FGPKCEYVVSGSDCGRIFIWKKKGGE 376
              KC    +    G + IW  +  E
Sbjct: 337 GKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
               +  V+F T+  ++ +G D    +L+ + +   KLSF  G  D   Q+     T   
Sbjct: 242 ETLPLLAVTFITESSLVAAGHDCF-PVLFTYDSAAGKLSF-GGRLDVPKQSSQRGLTARE 299

Query: 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS---PHVFYTCGEDGLVQ 176
                      + A           L   H+    ++++  G       F T G DG + 
Sbjct: 300 RFQNL-----DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354

Query: 177 HFDLRTGAAT 186
            +D+R+  + 
Sbjct: 355 IWDVRSLESA 364

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 4e-11
 Identities = 46/415 (11%), Positives = 101/415 (24%), Gaps = 72/415 (17%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
           H   + +VS        +S S D  + +WD K    +                     D+
Sbjct: 13  HDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNE------------------NPKDK 52

Query: 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179
           S         + H  +L                   +  +     +  T    G +  + 
Sbjct: 53  SYSHFVHKSGLHHVDVL-----------------QAIERDAFELCLVATTSFSGDLLFYR 95

Query: 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR----NANLFAVAGSDEYTRLYDIRK 235
           +     T+      +D   + M   +  A+          ++          T ++    
Sbjct: 96  ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155

Query: 236 YKWDGSTDFGQPADYFCPPNLIGDEQVG---ITGLAFSDQSELLVSYNDEFIYLFTQDMG 292
           +  + ++     +        +          T +  S++  +   +N+  + +      
Sbjct: 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL 215

Query: 293 LGPNPPP-------------SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339
                               S   S +     +  D  S    +   T+           
Sbjct: 216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 275

Query: 340 RNCVTVKGVNFFG----------PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV- 388
            +        F               E + S    G++  W  K  E I  +      + 
Sbjct: 276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335

Query: 389 ---NCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWW 440
              + +    H   LA  G+  D+K L            N    C  +  +  W+
Sbjct: 336 IEEDILAVDEHGDSLAEPGV-FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNV-FQAKIM 113
                H   V ++SFN  G+ L S   D ++  WD KT+    +  + H D++  +  I+
Sbjct: 283 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL-NMHCDDIEIEEDIL 341

Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGV 141
              +    +       V+  +   R G+
Sbjct: 342 AVDEHGDSLAEPGVFDVKFLKKGWRSGM 369

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.9 bits (135), Expect = 1e-09
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
           H   +  +S + DG  L S   +  +  WD  T      F   H   +   K    
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 77  ISGSDDRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131
            +GS D  VI+W+     +   +   +    +V       + ++ +IV+   D  ++
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI---WLNETTIVSAGQDSNIK 293

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 8e-04
 Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 5/117 (4%)

Query: 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIE 392
           QV  GH   +T   ++      + + S    G I  W    G   RV  +    ++  I+
Sbjct: 6   QVRYGHNKAIT--ALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 393 PHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCS 449
                 +   S  +  +K++    +   +      ++                 +  
Sbjct: 63  TTSKGDLFTVSWDD-HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.002
 Identities = 32/296 (10%), Positives = 78/296 (26%), Gaps = 26/296 (8%)

Query: 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT-------- 190
           G ++    G H      L+         ++   +G +  +D+ TG +  +F         
Sbjct: 2   GSIDQVRYG-HNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 191 ------CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244
                    +        +  + A      ++   A   S +   L          +  +
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119

Query: 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVS 304
              A Y              + +A S+  + +     +      +  G   +   +    
Sbjct: 120 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179

Query: 305 TRSEASEMGSDHTSAASPSTANTDV------RIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358
               +    ++     +   +   +                           + P    +
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 359 VSGSDCGRIFIWKKKGGELIRVIEADRH---VVNCIEPHPHSTVLASSGIESDIKI 411
            +GS    + +W         +I    H    VN +     +T + S+G +S+IK 
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKF 294

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
           H  CV ++ F   G   +S   D  +  W          F S  + +V    I    DD+
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQSKESSSVLSCDISV--DDK 319

Query: 120 SIVTCAADGQVR 131
            IVT + D +  
Sbjct: 320 YIVTGSGDKKAT 331

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKT----ERVKLSFHSGHNDNVFQAKIMPF 115
           H   V  V+ +     + +G     V +WD         V        ++ +   K++P 
Sbjct: 50  HGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP- 107

Query: 116 TDDRSIVTCAADGQVRH 132
            D  +++       +  
Sbjct: 108 -DGCTLIVGGEASTLSI 123

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410
           F    ++ VS      +  W+   G  I   +     V   +       + +   +    
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISVDDKYIVTGSGDKKAT 331

Query: 411 I 411
           +
Sbjct: 332 V 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 43  ASEDLVLRL-----GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
             +D +L       G      K    V +   + D   +++GS D++  +++
Sbjct: 283 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 30/350 (8%), Positives = 81/350 (23%), Gaps = 47/350 (13%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMP 114
               +  ++ +       +L+  S D  + ++ +    + V L     +   +     + 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174
             +    +             L        L             + G   +     +  +
Sbjct: 67  --NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234
                   G           ++ +    +           N++   V  ++   + + + 
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT------MDTNSSRLIVGMNNSQVQWFRLP 178

Query: 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294
             + D  T       Y      +             +Q     S  D  + +   D    
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVAL----------LPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354
                          +   ++                         N +       F P+
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLA--------------------YPVNSIE------FSPR 262

Query: 355 CEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASS 403
            +++ +    G I  W  +  + I+     +   V  I    +   LA+S
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMP 114
            K       VN++ F+     L +   D  +  W+ +T +   +F   + D+V   KI  
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIAC 302

Query: 115 FTDDRSIVTCAADGQVR 131
              D  +    +D   +
Sbjct: 303 --SDNILCLATSDDTFK 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 1e-08
 Identities = 29/322 (9%), Positives = 73/322 (22%), Gaps = 23/322 (7%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVI-LWDWKTERVKL--SFHSGHNDNVFQAKIMPFT 116
            R     +S++   + +         +   D    +V     F    +  V   K  P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGK------HQGRAHKLAIEP-GSPHVFYTC 169
             + + +    G+V            +  +          G    ++ +  G        
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229
           G D         +G +    +         ++             + ++    G      
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-- 193

Query: 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289
            +            F +  ++                ++  D          E      Q
Sbjct: 194 -FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252

Query: 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349
                 +   S   +T        +D T        +       Q +   +  +  + V 
Sbjct: 253 GGIFALSWLDSQKFATVG------ADATI----RVWDVTTSKCVQKWTLDKQQLGNQQVG 302

Query: 350 FFGPKCEYVVSGSDCGRIFIWK 371
                   ++S S  G +  ++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 14/93 (15%), Positives = 29/93 (31%)

Query: 88  WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG 147
           +D K+                    + + D +   T  AD  +R   +     V+   L 
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292

Query: 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180
           K Q    ++ +         +   DG +  ++L
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
              H G V  ++++ DG  + S S D+ + +W+  T +V+ +   G      Q  I+   
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-- 291

Query: 117 DDRSIVTCAADGQVR 131
             +++V+ +A+G + 
Sbjct: 292 TKQALVSISANGFIN 306

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 30/307 (9%), Positives = 65/307 (21%), Gaps = 16/307 (5%)

Query: 109 QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168
            A ++  T     +       V    +      +T++  +H  +       P S +   +
Sbjct: 19  TAVVLGNTPAGDKIQYCNGTSVYTVPV--GSLTDTEIYTEHSHQTTVAKTSP-SGYYCAS 75

Query: 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228
               G V+ +D          T          ++  + +                    T
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288
              +        + +            + G +   +              +        +
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA------------IFEGPPFKFKS 183

Query: 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348
                             S  +  G D T         T   +       +         
Sbjct: 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 243

Query: 349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIES 407
             + P    + S S    I IW     ++ + I    R     +        L S     
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 408 DIKILTP 414
            I  + P
Sbjct: 304 FINFVNP 310

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (116), Expect = 3e-07
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
                       + D++ +GS D  + ++  K     +   + H D V       +    
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL---WETPS 270

Query: 120 SIVTCAADGQVR 131
           ++V+  AD  ++
Sbjct: 271 TLVSSGADACIK 282

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
           +  H   +  ++ N     LISGS D R++ W   +       H  H++ +     +  +
Sbjct: 9   ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------HQDHSNLIVS---LDNS 55

Query: 117 DDRSIVTC 124
             +   + 
Sbjct: 56  KAQEYSSI 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK-KKGGELIRVIEADRHVVNCIEPHPHS 397
                  KG N    + + V +GS    IFI+  K+  ++I+ + A +  VN +     S
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 270

Query: 398 TVLASSGIESDIKI 411
           T L SSG ++ IK 
Sbjct: 271 T-LVSSGADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 53  IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
           I   L+ H+  VN + + T    L+S   D  +  W+
Sbjct: 250 IIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 30/336 (8%), Positives = 65/336 (19%), Gaps = 32/336 (9%)

Query: 60  HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
               +  V    D  +           L  +     K      +  NVF   +       
Sbjct: 41  EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100

Query: 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRA-----HKLAIEPGSPHVFYTCGEDGL 174
            +     +      +  +   +E                  +A      H          
Sbjct: 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160

Query: 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234
           +  +D+         T    D    +              ++               D  
Sbjct: 161 IHVYDMEGRKIFAATTENSHDYAPAFD------------ADSKNLYYLSYRSLDPSPDRV 208

Query: 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS------YNDEFIYLFT 288
              +          +    P +I              +S    +         +      
Sbjct: 209 VLNFS--------FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260

Query: 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV 348
            D G      P             G               ++   +  K       +  +
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320

Query: 349 NFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384
                  + V+   D G+I+ +  +  E  R +E D
Sbjct: 321 R-LSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 7/78 (8%)

Query: 54  YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIM 113
              L+      +               +   ++ +D KT +V         +N+   ++ 
Sbjct: 269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLS 323

Query: 114 PFTDDRSIVTCAADGQVR 131
              D ++++    DG++ 
Sbjct: 324 A--DRKTVMVRKDDGKIY 339

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 4/37 (10%), Positives = 16/37 (43%)

Query: 56  KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT 92
           K+ + +  +  +  + D   ++   DD ++  +  + 
Sbjct: 309 KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 36/350 (10%), Positives = 80/350 (22%), Gaps = 39/350 (11%)

Query: 67  VSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCA 125
            +     + +I  +    + + D  ++ V  S           A + P  D+R+  V   
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNN 59

Query: 126 ADGQVR----HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181
             G +                + + G+     +  AI P    V+ T      +    + 
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241
                E+F+             +    +   P    ++ +  +       D   Y     
Sbjct: 120 KPPRLEVFSTA---------DGLEAKPVRTFPMPRQVYLMRAA------DDGSLYVAGPD 164

Query: 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSS 301
                         L                 +   + +  + +               +
Sbjct: 165 IYKMDVKTGKYTVALPLRNWN----------RKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214

Query: 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361
                 +            S                       +       PK    + G
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL-----RSPKDPNQIYG 269

Query: 362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
               R+  +  K  +LI+    D H   C+        L   G  +D+ +
Sbjct: 270 VL-NRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAV 317

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 59  KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF 108
           +    V  + +  D   ++SG  D  + +WD  T   K    +GH  +V 
Sbjct: 13  ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVL 59

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 55  AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
             L +H G V  + F  D   ++S S D  +++WD
Sbjct: 261 RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 18/177 (10%)

Query: 57  LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
           L  HR  VN V F+     ++S S DR + +W+  T     + + GH   +         
Sbjct: 134 LVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIA----CLQY 186

Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176
            DR +V+ ++D  +R   I          L   +G    +           +   DG ++
Sbjct: 187 RDRLVVSGSSDNTIRLWDI-----ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

Query: 177 HFDLRTGAATELFTC-RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232
            +DL              +     +   V    +  D         +  D+   ++D
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRV--FRLQFDEF---QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH 396
           T KGV       + +VSG     I IW K   E  R++      V C++    
Sbjct: 14  TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 45/380 (11%), Positives = 104/380 (27%), Gaps = 34/380 (8%)

Query: 67  VSFNTDGD--ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124
              + D +    ++  D  ++ L D  T  +K    +G+   V  +++      R +   
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSA--SGRYLFVI 79

Query: 125 AADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181
             DG+V    +  +      E K+  + +             +              D  
Sbjct: 80  GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 139

Query: 182 TGAATELFTCR-PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240
           T    ++ + R    D + Y     + AI         F V   +    L        + 
Sbjct: 140 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNVKETGKILLVDYTDLNNL 198

Query: 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS 300
            T       +    +  G +      +  ++    LV  + +   L   +   G  P P 
Sbjct: 199 KTTEISAERF---LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 255

Query: 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360
              +        G    ++     +   +   P+ +  +              K      
Sbjct: 256 RGANF--VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA------------WKILDSFP 301

Query: 361 GSDCGRIFIW---KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417
               G +FI      +   +   +  +  +   +        +   G + + K L    A
Sbjct: 302 ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV-AVFDIKAMTGDGSDPEFKTL--PIA 358

Query: 418 DRATLPTNIEQVCFSIYSAD 437
           + A +     +V    ++ D
Sbjct: 359 EWAGITEGQPRVVQGEFNKD 378

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Length = 427

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 20/143 (13%), Positives = 36/143 (25%), Gaps = 6/143 (4%)

Query: 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210
           G    +   P +  + Y   + G       R  A T  +           M ++   +IA
Sbjct: 12  GYITGIVAHPKTKDLLYARTDIGGAY----RWDAGTSKWIPLNDFIEAQDMNIMGTESIA 67

Query: 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270
           +DP N +         Y        Y  +         +   P       +     LA +
Sbjct: 68  LDPNNPDRL-YLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVN 126

Query: 271 -DQSELLVSYNDEFIYLFTQDMG 292
              S  +           + D  
Sbjct: 127 PFNSNEVWMGTRTEGIWKSSDRA 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.94
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.92
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.89
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.79
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.78
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.77
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.74
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.45
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.45
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.43
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.37
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.34
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.34
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.3
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.28
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.23
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.19
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.91
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.89
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.6
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.55
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.39
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.35
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.32
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.17
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.11
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.97
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.92
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.9
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.79
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.76
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.47
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.24
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.07
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.8
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.66
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.59
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.53
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.3
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.79
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.6
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.48
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.06
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.37
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.69
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	86.98
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	82.2
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	82.02

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-47  Score=330.47  Aligned_cols=293  Identities=14%  Similarity=0.179  Sum_probs=247.3

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeee----eccCCCcceeEEEEccCCCCeEEEEEc
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLS----FHSGHNDNVFQAKIMPFTDDRSIVTCA  125 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~l~s~~  125 (458)
                      +.+.++.+ +|...|++++|+|+|++||+|+ ||.|+|||+.++.....    ...+|.+.|.+++|+|  ++++|++++
T Consensus        41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~--dg~~l~s~~  116 (337)
T d1gxra_          41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGG  116 (337)
T ss_dssp             EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEE
T ss_pred             CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC--CCCEEEEee
Confidence            44556666 6999999999999999999997 79999999976543221    2257899999999999  999999999


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN  205 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (458)
                      .||.|++||+..........+..|...+..++|+|++ .++++++.|+.|++|++++++.......          +...
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~----------~~~~  185 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDG  185 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSC
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc----------cccc
Confidence            9999999999876655555577899999999999998 6889999999999999998876554432          3457


Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEE
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY  285 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~  285 (458)
                      +.+++|+++ +..+++++.|+.+++||+++++.                         +                    .
T Consensus       186 v~~l~~s~~-~~~~~~~~~d~~v~i~d~~~~~~-------------------------~--------------------~  219 (337)
T d1gxra_         186 ASCIDISND-GTKLWTGGLDNTVRSWDLREGRQ-------------------------L--------------------Q  219 (337)
T ss_dssp             EEEEEECTT-SSEEEEEETTSEEEEEETTTTEE-------------------------E--------------------E
T ss_pred             ccccccccc-cccccccccccccccccccccee-------------------------e--------------------c
Confidence            899999997 68999999999999999876531                         0                    0


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG  365 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg  365 (458)
                      .++                                                  +..  .|.+++| +|++++|++|+.|+
T Consensus       220 ~~~--------------------------------------------------~~~--~i~~l~~-~~~~~~l~~~~~d~  246 (337)
T d1gxra_         220 QHD--------------------------------------------------FTS--QIFSLGY-CPTGEWLAVGMESS  246 (337)
T ss_dssp             EEE--------------------------------------------------CSS--CEEEEEE-CTTSSEEEEEETTS
T ss_pred             ccc--------------------------------------------------ccc--ceEEEEE-cccccccceecccc
Confidence            011                                                  111  2788888 99999999999999


Q ss_pred             eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeee
Q 012712          366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQN  445 (458)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  445 (458)
                      .+++||+.+++.. ....|...|++++|+|++++|++++.||.|++||+.+++......|...|.+++|+|++++|++++
T Consensus       247 ~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         247 NVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             CEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             ccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEe
Confidence            9999999888765 456789999999999999999999999999999999998887788889999999999999999999


Q ss_pred             cCCceEEEEEec
Q 012712          446 FSCSILLFEWLV  457 (458)
Q Consensus       446 ~d~~i~~w~~~~  457 (458)
                      .||+|+|||.+.
T Consensus       326 ~D~~I~vWdl~~  337 (337)
T d1gxra_         326 GDKKATVYEVIY  337 (337)
T ss_dssp             TTSCEEEEEEEC
T ss_pred             CCCeEEEEEEEC
Confidence            999999999874

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-46  Score=326.01  Aligned_cols=307  Identities=15%  Similarity=0.243  Sum_probs=261.8

Q ss_pred             eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712           54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA  133 (458)
Q Consensus        54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw  133 (458)
                      ..+|+||+++|++|+|+|++++||||+.|++|+|||+.+++.+..+ .+|...|.+++|+|  ++.+++++..++.+.+|
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~--~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDH--SGKLLASCSADMTIKLW   86 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECT--TSSEEEEEETTSCCCEE
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeec--ccccccccccccccccc
Confidence            4579999999999999999999999999999999999999988887 78999999999999  99999999999999999


Q ss_pred             ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712          134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP  213 (458)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  213 (458)
                      +....+....  +..|...+.++.++|++ ..+++++.|+.+++||+++++....+..          +...+.+++|+|
T Consensus        87 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  153 (317)
T d1vyhc1          87 DFQGFECIRT--MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTG----------HREWVRMVRPNQ  153 (317)
T ss_dssp             ETTSSCEEEC--CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEECT
T ss_pred             cccccccccc--cccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEEcc----------CCCcceeeeccc
Confidence            9887766554  77899999999999999 6789999999999999999987776653          344689999999


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCC
Q 012712          214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL  293 (458)
Q Consensus       214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~  293 (458)
                      + +.+|++++.|+.|++|+.++.+.               ......+...+.+++|+|++.......             
T Consensus       154 ~-~~~l~~~~~d~~v~~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------  204 (317)
T d1vyhc1         154 D-GTLIASCSNDQTVRVWVVATKEC---------------KAELREHRHVVECISWAPESSYSSISE-------------  204 (317)
T ss_dssp             T-SSEEEEEETTSCEEEEETTTCCE---------------EEEECCCSSCEEEEEECCSCGGGGGGG-------------
T ss_pred             C-CCEEEEEeCCCeEEEEeecccee---------------eEEEecCCCCceEEEEeeccccceeec-------------
Confidence            8 78999999999999999988653               223345677888999988764221100             


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                                                                   ...   ...... ...+.++++++.|+.|++||+.
T Consensus       205 ---------------------------------------------~~~---~~~~~~-~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         205 ---------------------------------------------ATG---SETKKS-GKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             ---------------------------------------------CCS---CC--------CCEEEEEETTSEEEEEETT
T ss_pred             ---------------------------------------------ccc---ceeeee-ccCCceeEeccCCCEEEEEECC
Confidence                                                         000   111222 5678899999999999999999


Q ss_pred             CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712          374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILL  452 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~  452 (458)
                      +++++.++.+|...|.+++|+|++++|++++.||.|++||+.++++. .+..|.+.|++++|+|++++|++|+.||+|+|
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            99999999999999999999999999999999999999999988765 66788999999999999999999999999999


Q ss_pred             EE
Q 012712          453 FE  454 (458)
Q Consensus       453 w~  454 (458)
                      ||
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-46  Score=331.35  Aligned_cols=332  Identities=19%  Similarity=0.267  Sum_probs=257.7

Q ss_pred             EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC
Q 012712           13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT   92 (458)
Q Consensus        13 l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~   92 (458)
                      .+.+..++...+|+....+..                ...+.+.+ +|++.|+||+|+|||++||+|+ |+.|+|||+.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~----------------~~~l~~~~-~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~   92 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREI----------------DVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD   92 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCE----------------EEEEEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTT
T ss_pred             ccccCCCCcEEEeCCCCCcce----------------eeeeEeeC-CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecc
Confidence            456777888999998755433                22333444 5999999999999999999987 88999999998


Q ss_pred             cceeeeec-----------------cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEE
Q 012712           93 ERVKLSFH-----------------SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK  155 (458)
Q Consensus        93 ~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~  155 (458)
                      ++.+..+.                 ..|...|++++|+|  ++++|++|+.||.|++|+...++....  ..+|...|.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~~~~l~s~~~dg~v~i~~~~~~~~~~~--~~~h~~~v~~  168 (388)
T d1erja_          93 GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYS  168 (388)
T ss_dssp             CCEEEEECC-----------------CCCCBEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEE
T ss_pred             cceEeeecccccccccccccccccccCCCCCEEEEEECC--CCCcceecccccccccccccccccccc--cccccccccc
Confidence            87765541                 24677799999999  999999999999999999988776655  7789999999


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      +.+++++ ..+++++.++.+++||.++........           ......++.+.|.++.+|++++.|+.|++||.++
T Consensus       169 ~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~  236 (388)
T d1erja_         169 LDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS-----------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  236 (388)
T ss_dssp             EEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             ccccccc-ccccccccceeeeeeeccccccccccc-----------cccccccccccCCCCCeEEEEcCCCeEEEeeccc
Confidence            9999998 678999999999999999876655444           2224566677776688999999999999999988


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                      ........        ........|...|.+++|+|++++|++++ ++.+++||+.+..........             
T Consensus       237 ~~~~~~~~--------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------  295 (388)
T d1erja_         237 GFLVERLD--------SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP-------------  295 (388)
T ss_dssp             CCEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------------------
T ss_pred             Cccceeec--------cccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc-------------
Confidence            76433211        11223345778999999999999999988 558999999875433221100             


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEE--
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE--  392 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--  392 (458)
                                   ...........|...  |.+++| +|++++|++|+.||.|++||+.+++++.++++|.+.|.+++  
T Consensus       296 -------------~~~~~~~~~~~~~~~--v~~~~~-s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~  359 (388)
T d1erja_         296 -------------NSGTCEVTYIGHKDF--VLSVAT-TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA  359 (388)
T ss_dssp             ----------------CEEEEEECCSSC--EEEEEE-CGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             -------------cccceeeecccccce--EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe
Confidence                         002233444556654  899998 99999999999999999999999999999999999999886  


Q ss_pred             ----ecCCCCeEEEeecCCcEEEecCC
Q 012712          393 ----PHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       393 ----~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                          |+|++++||||+.||+|+||+++
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                56799999999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-44  Score=315.76  Aligned_cols=279  Identities=16%  Similarity=0.229  Sum_probs=234.0

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      -.+.|+|++++|++|+ ||.|+|||++++.....                .......+|.+.|.+++|+|++++|++|+.
T Consensus        55 ~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~----------------~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~  117 (337)
T d1gxra_          55 CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP----------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC----------------SEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             EEEEECCCCCEEEEEE-CCEEEEEEccCCcccce----------------eEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence            3467899999999998 89999999987654322                112234689999999999999999999999


Q ss_pred             CCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712           82 DRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE  159 (458)
Q Consensus        82 d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (458)
                      |+.|++||+....  ....+ ..|...+..++|+|  ++.++++++.|+.|++|++.+++....  ...|...+.+++|+
T Consensus       118 dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~--~~~~~~~v~~l~~s  192 (337)
T d1gxra_         118 ASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDIS  192 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccc-cccccccccccccc--ccccccccccccccccccccccccccc--cccccccccccccc
Confidence            9999999987544  33333 68999999999999  999999999999999999988776544  67899999999999


Q ss_pred             CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712          160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD  239 (458)
Q Consensus       160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  239 (458)
                      +++ ..+++++.|+.+++||+++++.+..+.           +...|.+++|+|+ ++++++++.|+.+++||+++.+. 
T Consensus       193 ~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~-----------~~~~i~~l~~~~~-~~~l~~~~~d~~i~i~d~~~~~~-  258 (337)
T d1gxra_         193 NDG-TKLWTGGLDNTVRSWDLREGRQLQQHD-----------FTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDK-  258 (337)
T ss_dssp             TTS-SEEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCE-
T ss_pred             ccc-cccccccccccccccccccceeecccc-----------cccceEEEEEccc-ccccceecccccccccccccccc-
Confidence            999 688999999999999999987766554           4457899999997 68999999999999999876431 


Q ss_pred             CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712          240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA  319 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (458)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (337)
T d1gxra_         259 --------------------------------------------------------------------------------  258 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCe
Q 012712          320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV  399 (458)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  399 (458)
                                    .....|..  .|.+++| +|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++
T Consensus       259 --------------~~~~~~~~--~i~~v~~-s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~  320 (337)
T d1gxra_         259 --------------YQLHLHES--CVLSLKF-AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKY  320 (337)
T ss_dssp             --------------EEECCCSS--CEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCE
T ss_pred             --------------cccccccc--ccceEEE-CCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCE
Confidence                          00112333  2788888 9999999999999999999999999988775 7789999999999999


Q ss_pred             EEEeecCCcEEEecC
Q 012712          400 LASSGIESDIKILTP  414 (458)
Q Consensus       400 l~s~~~d~~i~iw~~  414 (458)
                      |++|+.||+|+|||+
T Consensus       321 l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         321 IVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEeCCCeEEEEEE
Confidence            999999999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.2e-44  Score=306.32  Aligned_cols=293  Identities=15%  Similarity=0.181  Sum_probs=238.0

Q ss_pred             cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712           59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER  138 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  138 (458)
                      .+.+.+..++++|+|+.||.++ ++.|.+||+++++....+ .+|...|++++|+|  ++++|++|+.||.|++||+.+.
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp--~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECT--TSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeC--CCCeEeccccCceEeeeeeecc
Confidence            4556777899999999999886 567999999988887776 79999999999999  9999999999999999999988


Q ss_pred             cceeeeeccccccceEEEEEcCCCCeEEEEecC--CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE--DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                      .......+..|..+|.+++|+|++ .++++++.  +..+++|++++++....+..          +...|.+++|+|++.
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~----------h~~~v~~v~~~~~~~  159 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTG----------QARAMNSVDFKPSRP  159 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCCC----------CSSCEEEEEECSSSS
T ss_pred             ccccccccccccCccccccccccc-cccccccccccccccccccccccccccccc----------cccccccccccccce
Confidence            776655678899999999999999 56777765  45699999998887665542          445799999999865


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP  295 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~  295 (458)
                      ..+++|+.|+.|++||+++.+.               ......|...|.+++|+|+++++++++ ++.+++||..++...
T Consensus       160 ~~l~sgs~d~~i~i~d~~~~~~---------------~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~  224 (311)
T d1nr0a1         160 FRIISGSDDNTVAIFEGPPFKF---------------KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT  224 (311)
T ss_dssp             CEEEEEETTSCEEEEETTTBEE---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             eeeccccccccccccccccccc---------------ccccccccccccccccCcccccccccccccccccccccccccc
Confidence            5789999999999999998753               234455788999999999999999888 568999998875322


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                      ..+.                               .......+|...  |.+++| +|++++|++|+.||.|+|||++++
T Consensus       225 ~~~~-------------------------------~~~~~~~~h~~~--V~~~~~-s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         225 GVFE-------------------------------DDSLKNVAHSGS--VFGLTW-SPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             EECB-------------------------------CTTSSSCSSSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccc-------------------------------cccccccccccc--cccccc-CCCCCEEEEEeCCCeEEEEECCCC
Confidence            1111                               112233456664  899998 999999999999999999999999


Q ss_pred             eEEEEeecCCc-eeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          376 ELIRVIEADRH-VVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       376 ~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      ++++++..|.. ....+.+.++++.|++++.||.|++||++
T Consensus       271 ~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         271 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999987653 22333444456789999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-42  Score=304.28  Aligned_cols=294  Identities=18%  Similarity=0.275  Sum_probs=243.9

Q ss_pred             EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712           50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ  129 (458)
Q Consensus        50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  129 (458)
                      .++..++|+||.++|++++|+|++++||||+.||+|+|||+.+++.+..+ ..|...|.+++|+|  ++.++++++.|+.
T Consensus        44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~v~~~~--~~~~l~~~~~d~~  120 (340)
T d1tbga_          44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAP--SGNYVACGGLDNI  120 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-ECSCSCEEEEEECT--TSSEEEEEETTCC
T ss_pred             ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE-ecccccEEeeEeec--cceeeeeecccce
Confidence            45677889999999999999999999999999999999999999988877 78999999999999  9999999999999


Q ss_pred             EEEeecccccce--eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          130 VRHAQILERGGV--ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       130 i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      +++|+.......  ....+.+|..........++.  .+.....+.....++............          ....+.
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~  188 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTG----------HTGDVM  188 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTTEEEEEEEC----------CSSCEE
T ss_pred             eecccccccccccccceeccccccccccccccccc--ccccccccccccccccccccccccccc----------cceeEe
Confidence            999998765432  223356677776666666554  567788888898988776654443332          334678


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL  286 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i  286 (458)
                      ...+.+. ..++++++.|+.|++||+++.+..               .....|...|++++|+|++++|++++ ++.+++
T Consensus       189 ~~~~~~~-~~~~~~~~~d~~v~i~d~~~~~~~---------------~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~  252 (340)
T d1tbga_         189 SLSLAPD-TRLFVSGACDASAKLWDVREGMCR---------------QTFTGHESDINAICFFPNGNAFATGSDDATCRL  252 (340)
T ss_dssp             EEEECTT-SSEEEEEETTTEEEEEETTTTEEE---------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeccccc-cceeEEeecCceEEEEECCCCcEE---------------EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence            8888887 689999999999999999887532               23445788999999999999999988 558999


Q ss_pred             EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712          287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR  366 (458)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~  366 (458)
                      |++...                                      .....+........+.+++| +|++++|++|+.||.
T Consensus       253 ~~~~~~--------------------------------------~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~g~~dg~  293 (340)
T d1tbga_         253 FDLRAD--------------------------------------QELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFN  293 (340)
T ss_dssp             EETTTT--------------------------------------EEEEEECCTTCCSCEEEEEE-CSSSCEEEEEETTSC
T ss_pred             Eeeccc--------------------------------------ccccccccccccCceEEEEE-CCCCCEEEEEECCCE
Confidence            998763                                      22233332222234889998 999999999999999


Q ss_pred             EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      |++||+.+++++.++.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus       294 i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.6e-43  Score=299.52  Aligned_cols=284  Identities=14%  Similarity=0.069  Sum_probs=230.1

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR   83 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   83 (458)
                      +.++|++.+|+.+. ++.|.+||+++++..                     +.+.+|.+.|++++|+|+|++||+|+.|+
T Consensus        23 ~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~---------------------~~~~~H~~~v~~~~~sp~g~~latg~~dg   80 (311)
T d1nr0a1          23 LGNTPAGDKIQYCN-GTSVYTVPVGSLTDT---------------------EIYTEHSHQTTVAKTSPSGYYCASGDVHG   80 (311)
T ss_dssp             CEECTTSSEEEEEE-TTEEEEEETTCSSCC---------------------EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEcCCCCEEEEEe-CCEEEEEECCCCcee---------------------EEEcCCCCCEEEEEEeCCCCeEeccccCc
Confidence            56789999999986 677999999977655                     35789999999999999999999999999


Q ss_pred             eEEEEECCCcceee-eeccCCCcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           84 RVILWDWKTERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        84 ~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      +|+|||+.+++... ..+..|..+|.+++|+|  ++++|++++.  +..+++|++.+++....  +.+|...|++++|+|
T Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~~~~~~~~~v~~~~~~~~~~~--l~~h~~~v~~v~~~~  156 (311)
T d1nr0a1          81 NVRIWDTTQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDTGTSNGN--LTGQARAMNSVDFKP  156 (311)
T ss_dssp             EEEEEESSSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETTTCCBCBC--CCCCSSCEEEEEECS
T ss_pred             eEeeeeeeccccccccccccccCccccccccc--ccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence            99999998876543 23378999999999999  9999999876  45699999988876655  788999999999999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG  240 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  240 (458)
                      +++.+|++|+.|+.|++||+++++....+..          +...|.++.|+|+ ++++++++.|+.|++||.++.+...
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~----------~~~~i~~v~~~p~-~~~l~~~~~d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----------HTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEECC----------CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cceeeeccccccccccccccccccccccccc----------ccccccccccCcc-ccccccccccccccccccccccccc
Confidence            9977789999999999999998876655542          4457999999997 7899999999999999998876433


Q ss_pred             CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712          241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA  319 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (458)
                      ....        ......+|...|.+++|+|++++|++++ ++.|++||+.+                            
T Consensus       226 ~~~~--------~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t----------------------------  269 (311)
T d1nr0a1         226 VFED--------DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT----------------------------  269 (311)
T ss_dssp             ECBC--------TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------
T ss_pred             cccc--------cccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC----------------------------
Confidence            2211        1223345788999999999999999998 45799999987                            


Q ss_pred             cCCCCCCcccccCceeecCccc-eeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          320 ASPSTANTDVRIAPQVYKGHRN-CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                                .++.+.+..+.. ...+.++.   +++++|++++.||.|++||.+
T Consensus       270 ----------~~~~~~l~~~~~~~~~~~~~~---~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         270 ----------LKVEKTIPVGTRIEDQQLGII---WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ----------TEEEEEEECCSSGGGCEEEEE---ECSSCEEEEETTCCEEEEETT
T ss_pred             ----------CcEEEEEECCCCccceEEEEE---ecCCEEEEEECCCEEEEEeCC
Confidence                      344555554432 11244444   456689999999999999963

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-42  Score=304.49  Aligned_cols=330  Identities=14%  Similarity=0.152  Sum_probs=248.0

Q ss_pred             eeEeecCCCce-EEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           54 YAKLDKHRGCV-NTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        54 ~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      ..+|+||.+.| +|++|  ++++||||+.|++|+|||+.+++.+..+ .+|.+.|++++|+|  + .+|++++.|+.|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~l~~s~--~-~~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAH--G-GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEEET--T-TEEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE-ECCCCCEEEEEEcC--C-CEEEEEeccccccc
Confidence            45789999886 55554  6889999999999999999999998887 79999999999997  5 47999999999999


Q ss_pred             eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC--------CC-----c
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--------RR-----N  199 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~-----~  199 (458)
                      |++.............+........+.+++ ..+++++.|+.|++||+++..............        ..     .
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            999888776654444555566677788887 789999999999999998765543222110000        00     0


Q ss_pred             ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                      ..+...+  ..+.++ +++++++..|+.|++||+++.+..               .....+...+.++.++|++.+++++
T Consensus       158 ~~~~~~v--~~~~~~-~~~~~~~~~d~~i~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  219 (355)
T d1nexb2         158 RGHMASV--RTVSGH-GNIVVSGSYDNTLIVWDVAQMKCL---------------YILSGHTDRIYSTIYDHERKRCISA  219 (355)
T ss_dssp             ECCSSCE--EEEEEE-TTEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             eeccccc--cccccc-cceeeeecccceeeeeecccccce---------------eeeeccccccccccccccceeeecc
Confidence            0011122  233444 579999999999999999886532               2233456778999999999999888


Q ss_pred             c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEE
Q 012712          280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV  358 (458)
Q Consensus       280 ~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l  358 (458)
                      + ++.+++|+..+                                      ......+.+|...  |.++++ +  +++|
T Consensus       220 ~~d~~i~i~d~~~--------------------------------------~~~~~~~~~h~~~--v~~~~~-~--~~~l  256 (355)
T d1nexb2         220 SMDTTIRIWDLEN--------------------------------------GELMYTLQGHTAL--VGLLRL-S--DKFL  256 (355)
T ss_dssp             ETTSCEEEEETTT--------------------------------------CCEEEEECCCSSC--CCEEEE-C--SSEE
T ss_pred             cccceEEeeeccc--------------------------------------ccccccccccccc--cccccc-c--ccee
Confidence            8 55899999987                                      4456677788875  788877 5  5799


Q ss_pred             EEecCCCeEEEEEecCCeEEEEeecCCceeeEE-EecCCCCeEEEeecCCcEEEecCCccccc--ccccccccEEEEEEe
Q 012712          359 VSGSDCGRIFIWKKKGGELIRVIEADRHVVNCI-EPHPHSTVLASSGIESDIKILTPNAADRA--TLPTNIEQVCFSIYS  435 (458)
Q Consensus       359 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~v~~~~~s  435 (458)
                      ++|+.||.|++||+.++...  +..|...+.++ .+++++++|++| .|+.|++||+++++++  .+.+|.+.|.+++|+
T Consensus       257 ~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~  333 (355)
T d1nexb2         257 VSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFK  333 (355)
T ss_dssp             EEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEE
T ss_pred             eeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEc
Confidence            99999999999999887654  44455556655 456677766655 5899999999998876  457788899999999


Q ss_pred             cCCcEEEeeecCCceEEEEE
Q 012712          436 ADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       436 ~d~~~l~s~~~d~~i~~w~~  455 (458)
                      |+ ..+++++.||.++||.|
T Consensus       334 ~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         334 GK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TT-EEEEEEESSSCEEEEEE
T ss_pred             CC-eEEEEEECCCcEEEEEE
Confidence            87 57788999999776654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-43  Score=305.28  Aligned_cols=295  Identities=20%  Similarity=0.341  Sum_probs=248.5

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD   82 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   82 (458)
                      .+.|+|++++|+||+.||+|+|||+++++++                     +++.+|.+.|.+++|+|++.++++++.+
T Consensus        22 ~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~---------------------~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1          22 RVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------RTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCCEE---------------------EEEeCCCCcEEEEeeecccccccccccc
Confidence            4668999999999999999999999988876                     4588999999999999999999999999


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      +.+.+|+....+....+ ..|...+.++.|+|  +++.+++++.|+.+++|++.+++....  +..|...+.+++|+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  155 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTM-HGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDG  155 (317)
T ss_dssp             SCCCEEETTSSCEEECC-CCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTS
T ss_pred             ccccccccccccccccc-ccccccceeeeccC--CCceEEeeccCcceeEeecccceeeeE--EccCCCcceeeecccCC
Confidence            99999999888776665 78999999999999  999999999999999999998877655  77899999999999999


Q ss_pred             CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712          163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST  242 (458)
Q Consensus       163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  242 (458)
                       .+|++++.|+.|++|++++++....+..          +...+.+++|+|+ ..........                 
T Consensus       156 -~~l~~~~~d~~v~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~~~~~~~~-----------------  206 (317)
T d1vyhc1         156 -TLIASCSNDQTVRVWVVATKECKAELRE----------HRHVVECISWAPE-SSYSSISEAT-----------------  206 (317)
T ss_dssp             -SEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECCS-CGGGGGGGCC-----------------
T ss_pred             -CEEEEEeCCCeEEEEeeccceeeEEEec----------CCCCceEEEEeec-cccceeeccc-----------------
Confidence             6899999999999999999887666543          3446888999886 3222211111                 


Q ss_pred             cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                                          ..........+.++++++ ++.|++|++.+                              
T Consensus       207 --------------------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~------------------------------  236 (317)
T d1vyhc1         207 --------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVST------------------------------  236 (317)
T ss_dssp             --------------------SCC-------CCEEEEEETTSEEEEEETTT------------------------------
T ss_pred             --------------------cceeeeeccCCceeEeccCCCEEEEEECCC------------------------------
Confidence                                111222334566777777 55899999887                              


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA  401 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  401 (458)
                              ...+..+.+|...  |.++++ +|++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+|++++|+
T Consensus       237 --------~~~~~~~~~~~~~--v~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         237 --------GMCLMTLVGHDNW--VRGVLF-HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             --------TEEEEEEECCSSC--EEEEEE-CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             --------CcEEEEEeCCCCC--EEEEEE-CCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence                    4556777888775  899998 99999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCcEEEec
Q 012712          402 SSGIESDIKILT  413 (458)
Q Consensus       402 s~~~d~~i~iw~  413 (458)
                      +|+.||+|+|||
T Consensus       306 s~s~Dg~i~iWd  317 (317)
T d1vyhc1         306 TGSVDQTVKVWE  317 (317)
T ss_dssp             EEETTSEEEEEC
T ss_pred             EEeCCCeEEEeC
Confidence            999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-42  Score=305.10  Aligned_cols=340  Identities=11%  Similarity=0.057  Sum_probs=240.8

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE  137 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  137 (458)
                      +.++|+|++|+|||++||+|+.|+.|+|||+.+++  .+..+ .+|.++|.+++|+|  ++++|++++.|+.|++||+.+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp--~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEET--TTTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECC--CCCEEEEEECCCeEEEEeecc
Confidence            34789999999999999999999999999998775  33334 78999999999999  999999999999999999988


Q ss_pred             ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712          138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      +.......+.+|...|.+++|+|++ +.|++++.|+.+++|+++............    ..  +...|.+++|+|+ +.
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~----~~--~~~~v~~v~~~p~-~~  154 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIK----KP--IRSTVLSLDWHPN-SV  154 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEEC----TT--CCSCEEEEEECTT-SS
T ss_pred             ccccccccccccccccccccccccc-ccceeecccCcceeeeeecccccccccccc----cc--ccccccccccccc-cc
Confidence            7766555677899999999999999 689999999999999988776543332211    11  4457999999997 78


Q ss_pred             EEEEecCCCeEEEEecCCCccCCCccCC---CCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712          218 LFAVAGSDEYTRLYDIRKYKWDGSTDFG---QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL  293 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~  293 (458)
                      +|++|+.|+.|++||.............   ..............|...|.+++|+|++++|++++ ++.|++||+..  
T Consensus       155 ~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~--  232 (371)
T d1k8kc_         155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK--  232 (371)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG--
T ss_pred             ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec--
Confidence            9999999999999999876543221111   01111111223345778899999999999999888 55899999987  


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK  373 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~  373 (458)
                                                          ...+..+..|..+  |.+++| +|++++|++|. |+.+++|...
T Consensus       233 ------------------------------------~~~~~~~~~~~~~--v~s~~f-s~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         233 ------------------------------------KMAVATLASETLP--LLAVTF-ITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             ------------------------------------TTEEEEEECSSCC--EEEEEE-EETTEEEEEET-TSSCEEEEEE
T ss_pred             ------------------------------------ccceeeeeccccc--ceeeee-cCCCCEEEEEc-CCceEEEEee
Confidence                                                3456667777765  899999 99999988776 7777777665


Q ss_pred             CCeEEEEeecCCceeeE---EEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCC----cEEEeeec
Q 012712          374 GGELIRVIEADRHVVNC---IEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADY----WWSKSQNF  446 (458)
Q Consensus       374 ~~~~~~~~~~~~~~v~~---~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~----~~l~s~~~  446 (458)
                      .......+..+......   ...+... .+  ...|..................|...|+++++.|.+    ..++|++.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~  349 (371)
T d1k8kc_         273 SAAGKLSFGGRLDVPKQSSQRGLTARE-RF--QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM  349 (371)
T ss_dssp             TTTTEEEECCCCCCC--------CHHH-HH--HHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred             CCCceEEEeeeecCcccccccccccee-eE--ecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcC
Confidence            54333333222111000   0000000 00  001111111111111122234588899999998866    46899999


Q ss_pred             CCceEEEEE
Q 012712          447 SCSILLFEW  455 (458)
Q Consensus       447 d~~i~~w~~  455 (458)
                      ||.|+|||+
T Consensus       350 Dg~v~iW~~  358 (371)
T d1k8kc_         350 DGGMSIWDV  358 (371)
T ss_dssp             TSEEEEEEH
T ss_pred             CCeEEEEeC
Confidence            999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-42  Score=295.69  Aligned_cols=290  Identities=17%  Similarity=0.192  Sum_probs=224.9

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH  132 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v  132 (458)
                      +.+.++||.++|++++|+|++++||||+.|++|++||+++++....+...|...|++++|+|  ++. +++++.|+.+++
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~--~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS--KGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT--TSC-EEEEETTTEEEE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec--cce-eecccceeeEEE
Confidence            45779999999999999999999999999999999999999988887678999999999999  886 556667899999


Q ss_pred             eeccccccee-eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          133 AQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       133 w~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      |+........ ......+...+.+++|+|++ .++++ +.++.+.+|+.....   ...           ....+.+++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~-~~~~~i~~~~~~~~~---~~~-----------~~~~~~~~~~  144 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVA-ACYKHIAIYSHGKLT---EVP-----------ISYNSSCVAL  144 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEE-EESSEEEEEETTEEE---EEE-----------CSSCEEEEEE
T ss_pred             eccCCcccccccccccccccccccccccccc-ccccc-ccccccccccccccc---ccc-----------cccccccccc
Confidence            9986543221 11234567788999999998 44444 456789999854321   111           2225788999


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712          212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD  290 (458)
Q Consensus       212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~  290 (458)
                      +|+ ++++++|+.||.|++||+++.+..              ......|...|.+++|+|++++|++++ ++.+++||+.
T Consensus       145 s~~-~~~l~~g~~dg~i~~~d~~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  209 (299)
T d1nr0a2         145 SND-KQFVAVGGQDSKVHVYKLSGASVS--------------EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA  209 (299)
T ss_dssp             CTT-SCEEEEEETTSEEEEEEEETTEEE--------------EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred             ccc-cccccccccccccccccccccccc--------------cccccccccccccccccccccccccccccccccccccc
Confidence            997 789999999999999999876521              112334678899999999999999888 5589999987


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      ++..                                   ......+.+|...  |.+++| +|++++|++|+.||.|++|
T Consensus       210 ~~~~-----------------------------------~~~~~~~~~h~~~--v~~l~~-s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         210 NNFE-----------------------------------LAHTNSWTFHTAK--VACVSW-SPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             GTTE-----------------------------------ESCCCCCCCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEE
T ss_pred             cccc-----------------------------------ccccccccccccc--cccccc-cccccceEEEcCCCEEEEE
Confidence            6432                                   1223445566664  899998 9999999999999999999


Q ss_pred             EecCCeEEE--EeecC-CceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          371 KKKGGELIR--VIEAD-RHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       371 d~~~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                      |+.+++...  ....| ...+.++.| +++++|++++.|+.|++||+.
T Consensus       252 d~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         252 NMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            998765433  33334 345666655 567899999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-41  Score=302.92  Aligned_cols=315  Identities=13%  Similarity=0.155  Sum_probs=240.9

Q ss_pred             EEecCCCeEEEEECCCccee----eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee--------
Q 012712           77 ISGSDDRRVILWDWKTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK--------  144 (458)
Q Consensus        77 ~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~--------  144 (458)
                      +....++...+|+....+..    ... .+|.+.|++++|+|  +|++|++|+ |+.|++||+.+++.+...        
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~H~~~V~~l~fs~--dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEee-CCCCCcEEEEEECC--CCCEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            45667788899997654432    122 36999999999999  999999987 899999999887654331        


Q ss_pred             --------eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          145 --------LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       145 --------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                              ....|...|++++|+|++ ++|++|+.||.|++||...++.......          +...|.+++++++ +
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~~~~~~~~----------h~~~v~~~~~~~~-~  175 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQG----------HEQDIYSLDYFPS-G  175 (388)
T ss_dssp             -----------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEECTT-S
T ss_pred             cccccccccccCCCCCEEEEEECCCC-Ccceeccccccccccccccccccccccc----------ccccccccccccc-c
Confidence                    123467789999999999 7899999999999999998877665542          4457999999997 6


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGP  295 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~  295 (458)
                      ..+++++.++.+++||.++....               .....+...+....+.+++.+|++++ ++.+++|+..++...
T Consensus       176 ~~~~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~  240 (388)
T d1erja_         176 DKLVSGSGDRTVRIWDLRTGQCS---------------LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV  240 (388)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEE---------------EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccccccceeeeeeeccccccc---------------cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccc
Confidence            89999999999999999876532               11222233333444445788999887 558999999875322


Q ss_pred             CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712          296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  375 (458)
                      ..+                               ........+|...  |.+++| +|++++|++++.||.|++||+.++
T Consensus       241 ~~~-------------------------------~~~~~~~~~h~~~--v~~l~~-s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         241 ERL-------------------------------DSENESGTGHKDS--VYSVVF-TRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EEE-------------------------------C------CCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEEC---
T ss_pred             eee-------------------------------ccccccccCCCCC--EEEEEE-CCCCCEEEEEECCCcEEEEeccCC
Confidence            111                               0112233456654  899998 999999999999999999998765


Q ss_pred             eE------------EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEE------ec
Q 012712          376 EL------------IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIY------SA  436 (458)
Q Consensus       376 ~~------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~------s~  436 (458)
                      +.            ......|...|.+++|+|++++|++|+.||.|++||+.++++. .+.+|.+.|.++++      +|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp  366 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP  366 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT
T ss_pred             ccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC
Confidence            32            3445678889999999999999999999999999999988775 67889999999874      67


Q ss_pred             CCcEEEeeecCCceEEEEEe
Q 012712          437 DYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       437 d~~~l~s~~~d~~i~~w~~~  456 (458)
                      ++.+|+||+.||+|+||++-
T Consensus       367 d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         367 EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TCEEEEEEETTSEEEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEeee
Confidence            99999999999999999973

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-42  Score=304.36  Aligned_cols=252  Identities=15%  Similarity=0.144  Sum_probs=201.4

Q ss_pred             CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712            2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD   81 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   81 (458)
                      -.++|+|++++||+|+.||.|+|||.++++..                   .+..+++|.++|++++|+|++++|++|+.
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-------------------~~~~l~gH~~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-------------------QVHELKEHNGQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEE-------------------EEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-------------------EEEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence            45678999999999999999999999866433                   34678999999999999999999999999


Q ss_pred             CCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce--eeeeccccccceEEEEE
Q 012712           82 DRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV--ETKLLGKHQGRAHKLAI  158 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~  158 (458)
                      |++|+|||+.++.....+ ..+|...|.+++|+|  +++.|++++.|+.|++|++......  .......|...|.+++|
T Consensus        72 D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~  149 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  149 (371)
T ss_dssp             TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             CCeEEEEeeccccccccccccccccccccccccc--ccccceeecccCcceeeeeecccccccccccccccccccccccc
Confidence            999999999877643332 367889999999999  9999999999999999998776543  22335678899999999


Q ss_pred             cCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc--------CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI--------DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      +|++ .+|++++.|+.|++||+..............        .......+...+.+++|+|+ +++|++++.|+.|++
T Consensus       150 ~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         150 HPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCL  227 (371)
T ss_dssp             CTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEETTTEEEE
T ss_pred             cccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc-cccccccccCCcceE
Confidence            9999 6889999999999999876543221111000        00011225567899999998 689999999999999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM  291 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~  291 (458)
                      ||+.+.+..               .....|..+|.+++|+|++++|++|.++.+++|....
T Consensus       228 wd~~~~~~~---------------~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         228 ADADKKMAV---------------ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             EEGGGTTEE---------------EEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             Eeeecccce---------------eeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            999876532               2334467789999999999999999988877776654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-40  Score=286.59  Aligned_cols=320  Identities=16%  Similarity=0.222  Sum_probs=246.7

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      +..+.|+||++.|.+ +++++|++||||+.|++|+|||+.+++++..+ .+|...|.+++|+|  +  +|++++.|+.++
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~~--~--~l~s~s~D~~~~   80 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD--N--IIISGSTDRTLK   80 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET--T--EEEEEETTSCEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeCC--C--ccccceeccccc
Confidence            455779999999865 46778999999999999999999999998877 79999999999987  4  899999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      +|+.........  ...+...+......+   ..+..+..|+.+.+|+.++++....+....           ... ...
T Consensus        81 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-----------~~~-~~~  143 (342)
T d2ovrb2          81 VWNAETGECIHT--LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHV-----------AAV-RCV  143 (342)
T ss_dssp             EEETTTTEEEEE--ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCS-----------SCE-EEE
T ss_pred             ccccccccceec--ccccceeEeeeeccc---ccccccccceeEEEeecccccceeeeeccc-----------ccc-eee
Confidence            999877665443  444555565555554   357888899999999999987766554221           112 222


Q ss_pred             CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712          212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD  290 (458)
Q Consensus       212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~  290 (458)
                      .+. ...+++++.|+.|++||.+..+..               .....|...+.  .+.+++.++++++ ++.|++||+.
T Consensus       144 ~~~-~~~~~~~~~d~~i~~~d~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~  205 (342)
T d2ovrb2         144 QYD-GRRVVSGAYDFMVKVWDPETETCL---------------HTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVE  205 (342)
T ss_dssp             EEC-SSCEEEEETTSCEEEEEGGGTEEE---------------EEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETT
T ss_pred             ccc-cceeeeecCCCeEEEeecccceee---------------EEEcCcccccc--cccCCCCEEEEEeCCCeEEEeecc
Confidence            333 468889999999999999876532               12233444444  4455778888887 5689999987


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW  370 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw  370 (458)
                      .                                      ...+..+.+|...  +.++.+   ++++|++++.||.|++|
T Consensus       206 ~--------------------------------------~~~~~~~~~~~~~--v~~~~~---~~~~l~s~s~d~~i~iw  242 (342)
T d2ovrb2         206 T--------------------------------------GNCIHTLTGHQSL--TSGMEL---KDNILVSGNADSTVKIW  242 (342)
T ss_dssp             T--------------------------------------CCEEEEECCCCSC--EEEEEE---ETTEEEEEETTSCEEEE
T ss_pred             c--------------------------------------ceeeeEecccccc--eeEEec---CCCEEEEEcCCCEEEEE
Confidence            7                                      3455667777764  666655   45799999999999999


Q ss_pred             EecCCeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc-c-----ccccccEEEEEEecCCcEE
Q 012712          371 KKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT-L-----PTNIEQVCFSIYSADYWWS  441 (458)
Q Consensus       371 d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~-----~~~~~~v~~~~~s~d~~~l  441 (458)
                      |+...+....+..   |...+.++.+  +++++++|+.||+|++||+.+++... +     .+|...|++++|+|++.++
T Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l  320 (342)
T d2ovrb2         243 DIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC  320 (342)
T ss_dssp             ETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred             ecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEE
Confidence            9999888888765   4455666666  45799999999999999999886642 2     3566779999999999999


Q ss_pred             EeeecCCc----eEEEEEec
Q 012712          442 KSQNFSCS----ILLFEWLV  457 (458)
Q Consensus       442 ~s~~~d~~----i~~w~~~~  457 (458)
                      |+|+.||+    |++|||-.
T Consensus       321 a~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         321 AVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEECSSSSSCCEEEEEECCC
T ss_pred             EEEeCCCCCeeEEEEEeCCC
Confidence            99999986    99999854

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-39  Score=284.70  Aligned_cols=286  Identities=15%  Similarity=0.175  Sum_probs=235.3

Q ss_pred             ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712          100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD  179 (458)
Q Consensus       100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  179 (458)
                      +.+|.+.|++++|+|  ++++|++|+.||.|++||+.+++.+..  +..|...|.+++|+|++ .++++++.|+.+++|+
T Consensus        51 L~GH~~~I~~l~~s~--~~~~l~sgs~Dg~v~iWd~~~~~~~~~--~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          51 LRGHLAKIYAMHWGT--DSRLLVSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEE--EECSCSCEEEEEECTTS-SEEEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEECC--CCCEEEEEECCCceeeeecccceeEEE--EecccccEEeeEeeccc-eeeeeecccceeeccc
Confidence            489999999999999  999999999999999999998877665  77899999999999999 6899999999999999


Q ss_pred             CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712          180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD  259 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (458)
                      ..............    .+  +..........+  ...+.....+.....+.......               ......
T Consensus       126 ~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  182 (340)
T d1tbga_         126 LKTREGNVRVSREL----AG--HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQ---------------TTTFTG  182 (340)
T ss_dssp             SSSSCSCCCEEEEE----CC--CSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEE---------------EEEEEC
T ss_pred             ccccccccccceec----cc--cccccccccccc--ccccccccccccccccccccccc---------------cccccc
Confidence            87665433221110    11  122233344443  35777788888888888776542               122333


Q ss_pred             cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712          260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG  338 (458)
Q Consensus       260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (458)
                      +...+....+.+.+.+++++. ++.+++||+.+                                      ......+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~--------------------------------------~~~~~~~~~  224 (340)
T d1tbga_         183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--------------------------------------GMCRQTFTG  224 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------------------------------------TEEEEEECC
T ss_pred             cceeEeeeccccccceeEEeecCceEEEEECCC--------------------------------------CcEEEEEeC
Confidence            456788999999999998887 55899999887                                      455677788


Q ss_pred             ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee--cCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712          339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA  416 (458)
Q Consensus       339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~  416 (458)
                      |...  |.+++| +|++++|++|+.||.|++|++...+.+..+.  .+...|.+++|+|++++|++|+.||.|++||+.+
T Consensus       225 h~~~--i~~v~~-~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         225 HESD--INAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             CSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT
T ss_pred             CCCC--eEEEEE-CCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC
Confidence            8875  899998 9999999999999999999999988887664  4566799999999999999999999999999998


Q ss_pred             cccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          417 ADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       417 ~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      +++. .+.+|.+.|++++|+||+.+|++|+.||.|+|||
T Consensus       302 ~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            8766 6778999999999999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.7e-40  Score=281.32  Aligned_cols=285  Identities=11%  Similarity=0.111  Sum_probs=217.9

Q ss_pred             eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEE
Q 012712           97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ  176 (458)
Q Consensus        97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  176 (458)
                      .+.+.+|...|++++|+|  ++++|++|+.||.|++||+.+++.... ....|...|++++|+|++ . +++++.|+.++
T Consensus         5 ~~~~~GH~~~V~~l~~s~--dg~~l~s~s~Dg~v~vWd~~~~~~~~~-~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v~   79 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSA--DGKTLFSADAEGHINSWDISTGISNRV-FPDVHATMITGIKTTSKG-D-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEC-SSCSCSSCEEEEEECTTS-C-EEEEETTTEEE
T ss_pred             ceEcCCCCCCcEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEE-EcCCCCCcEEEEEeeccc-e-eecccceeeEE
Confidence            344589999999999999  999999999999999999998876654 235789999999999998 4 56677899999


Q ss_pred             EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712          177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL  256 (458)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  256 (458)
                      +|+............       .......+.+++|+|+ +.+++++ .++.+.+|+......                 .
T Consensus        80 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~-g~~~~~~-~~~~i~~~~~~~~~~-----------------~  133 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAV-------ANKLSSQPLGLAVSAD-GDIAVAA-CYKHIAIYSHGKLTE-----------------V  133 (299)
T ss_dssp             EECSSSSSSCTTSCC-------EEECSSCEEEEEECTT-SSCEEEE-ESSEEEEEETTEEEE-----------------E
T ss_pred             EeccCCccccccccc-------cccccccccccccccc-ccccccc-ccccccccccccccc-----------------c
Confidence            999876543221111       0113446789999997 5666555 456899998654221                 1


Q ss_pred             ccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee
Q 012712          257 IGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV  335 (458)
Q Consensus       257 ~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (458)
                        .....+.+++|+|++++|++++ ++.+++||+.+..                                     .....
T Consensus       134 --~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~-------------------------------------~~~~~  174 (299)
T d1nr0a2         134 --PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-------------------------------------VSEVK  174 (299)
T ss_dssp             --ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-------------------------------------EEEEE
T ss_pred             --cccccccccccccccccccccccccccccccccccc-------------------------------------ccccc
Confidence              1234678899999999999987 5589999987631                                     11112


Q ss_pred             ecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE---EEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712          336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI---RVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       336 ~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      ...|..  .|.+++| +|++++|++++.|+.|++||+.++...   ..+.+|...|++++|+|++++|++|+.||.|++|
T Consensus       175 ~~~~~~--~i~~~~~-~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         175 TIVHPA--EITSVAF-SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             EEECSS--CEEEEEE-CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccc--ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEE
Confidence            234544  3899998 999999999999999999999887655   3456789999999999999999999999999999


Q ss_pred             cCCccccc---cccccc-ccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          413 TPNAADRA---TLPTNI-EQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       413 ~~~~~~~~---~~~~~~-~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      |+.++...   ....|. ..+..+ +++++.+|++++.|+.|++||.
T Consensus       252 d~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         252 NMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             ETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEEC
T ss_pred             ECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEec
Confidence            99876443   222333 346555 4566788999999999999995

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-39  Score=286.06  Aligned_cols=310  Identities=17%  Similarity=0.209  Sum_probs=235.3

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV   85 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   85 (458)
                      .++++++|+||+.||+|+|||+.+++++                     +++.+|+++|++++|+|+ .+|++|+.|++|
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~~~---------------------~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i   76 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKKFL---------------------LQLSGHDGGVWALKYAHG-GILVSGSTDRTV   76 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTEEE---------------------EEEECCSSCEEEEEEETT-TEEEEEETTCCE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCcEE---------------------EEEECCCCCEEEEEEcCC-CEEEEEeccccc
Confidence            4567899999999999999999988766                     458999999999999986 589999999999


Q ss_pred             EEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee--------------------
Q 012712           86 ILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK--------------------  144 (458)
Q Consensus        86 ~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~--------------------  144 (458)
                      ++|+....+...... ..+........+.+  ++..+++++.|+.|++|++.+.......                    
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             cccccccccccccccccccccccccccccc--ccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            999999887765552 22334455667777  9999999999999999999765432210                    


Q ss_pred             -eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          145 -LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       145 -~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                       ....|...+.  .+.+++ .+++++..|+.|++||+++++.......          ....+.++.++|+ +.++++++
T Consensus       155 ~~~~~~~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~  220 (355)
T d1nexb2         155 GVLRGHMASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSG----------HTDRIYSTIYDHE-RKRCISAS  220 (355)
T ss_dssp             EEEECCSSCEE--EEEEET-TEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEETT-TTEEEEEE
T ss_pred             eeeeecccccc--cccccc-ceeeeecccceeeeeecccccceeeeec----------ccccccccccccc-ceeeeccc
Confidence             0111223333  344555 6789999999999999998876655442          3336789999997 68999999


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCC
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSP  302 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~  302 (458)
                      .|+.|++||.+++..               ......|...|.++++++  ++|++++ ++.|++||+.+.          
T Consensus       221 ~d~~i~i~d~~~~~~---------------~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~----------  273 (355)
T d1nexb2         221 MDTTIRIWDLENGEL---------------MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY----------  273 (355)
T ss_dssp             TTSCEEEEETTTCCE---------------EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTC----------
T ss_pred             ccceEEeeecccccc---------------cccccccccccccccccc--ceeeeeeccccccccccccc----------
Confidence            999999999988753               233456788899999875  5788777 568999998763          


Q ss_pred             ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE-Ee
Q 012712          303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR-VI  381 (458)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~  381 (458)
                                                    ...+..|...  +.++.+++++++++++|+ ||.|++||+++++++. .+
T Consensus       274 ------------------------------~~~~~~~~~~--~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~  320 (355)
T d1nexb2         274 ------------------------------SRKFSYHHTN--LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI  320 (355)
T ss_dssp             ------------------------------CEEEEEECTT--CCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCT
T ss_pred             ------------------------------ceecccccCC--ceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEe
Confidence                                          2334444443  444444488888887765 8999999999999885 46


Q ss_pred             ecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          382 EADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       382 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      .+|.+.|.+++|+|+ .++++++.||.++||.+
T Consensus       321 ~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         321 LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            789999999999987 57888999999776643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-37  Score=270.46  Aligned_cols=307  Identities=21%  Similarity=0.287  Sum_probs=231.7

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV   85 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   85 (458)
                      ++++|++||||+.||+|+|||+++++++                     +++.+|.+.|.+++|+|+  +|++++.|+.+
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~---------------------~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~   79 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVTGKCL---------------------RTLVGHTGGVWSSQMRDN--IIISGSTDRTL   79 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEE---------------------EECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEE---------------------EEEeCCCCCEEEEEeCCC--ccccceecccc
Confidence            5678999999999999999999988866                     458899999999999974  89999999999


Q ss_pred             EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712           86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV  165 (458)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  165 (458)
                      ++|+.......... ..+...+.....    ....++.+..|+.+.+|+..+++....  +..+.....  ...+.. ..
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~-~~  149 (342)
T d2ovrb2          80 KVWNAETGECIHTL-YGHTSTVRCMHL----HEKRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVR--CVQYDG-RR  149 (342)
T ss_dssp             EEEETTTTEEEEEE-CCCSSCEEEEEE----ETTEEEEEETTSEEEEEESSSCCEEEE--EECCSSCEE--EEEECS-SC
T ss_pred             cccccccccceecc-cccceeEeeeec----ccccccccccceeEEEeecccccceee--eecccccce--eecccc-ce
Confidence            99999887765554 455556655555    345778888999999999988776544  332333222  233333 46


Q ss_pred             EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712          166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG  245 (458)
Q Consensus       166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  245 (458)
                      +++++.|+.|++||++..+....+..          +...+..+.  ++ +.++++++.||.|++||++..+.       
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~~~----------~~~~~~~~~--~~-~~~l~s~~~dg~i~~~d~~~~~~-------  209 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTLQG----------HTNRVYSLQ--FD-GIHVVSGSLDTSIRVWDVETGNC-------  209 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECC----------CSSCEEEEE--EC-SSEEEEEETTSCEEEEETTTCCE-------
T ss_pred             eeeecCCCeEEEeecccceeeEEEcC----------ccccccccc--CC-CCEEEEEeCCCeEEEeeccccee-------
Confidence            78899999999999988876655542          222344444  44 57999999999999999988753       


Q ss_pred             CCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712          246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST  324 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (458)
                              ......|...+.++++++  ++|++++ ++.|++||+....                               
T Consensus       210 --------~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~-------------------------------  248 (342)
T d2ovrb2         210 --------IHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ-------------------------------  248 (342)
T ss_dssp             --------EEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCC-------------------------------
T ss_pred             --------eeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccccc-------------------------------
Confidence                    233445677788887765  5788877 5689999987632                               


Q ss_pred             CCcccccCceeecCccc-eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee-----cCCceeeEEEecCCCC
Q 012712          325 ANTDVRIAPQVYKGHRN-CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-----ADRHVVNCIEPHPHST  398 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~  398 (458)
                             ....+..+.. ...+.++.+   +++++++|+.||+|++||+++++.++++.     +|...|++++|+|++.
T Consensus       249 -------~~~~~~~~~~~~~~~~~~~~---~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~  318 (342)
T d2ovrb2         249 -------CLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  318 (342)
T ss_dssp             -------EEEEECSTTSCSSCEEEEEE---CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             -------ccccccccceeeeceeeccc---CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC
Confidence                   2233333221 112555554   56799999999999999999999988874     5777899999999999


Q ss_pred             eEEEeecCCc----EEEecCCc
Q 012712          399 VLASSGIESD----IKILTPNA  416 (458)
Q Consensus       399 ~l~s~~~d~~----i~iw~~~~  416 (458)
                      +||+|+.||+    |++||++.
T Consensus       319 ~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         319 VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999985    99999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-38  Score=270.04  Aligned_cols=285  Identities=13%  Similarity=0.171  Sum_probs=213.0

Q ss_pred             CCCCCCCCeEEEeeCCC-cEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEec--CCCEEEEe
Q 012712            4 ASNNNNNKRARTSVDKA-LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNT--DGDILISG   79 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~-~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~--~~~~l~s~   79 (458)
                      +.|+|++++|+.++.+. .|+.|+....+..                   ....+.+|. ..|++++|+|  ++++||+|
T Consensus        23 l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~-------------------~~~~~~gh~~~~v~~v~fsP~~~g~~lasg   83 (325)
T d1pgua1          23 LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP-------------------PVVQFTGHGSSVVTTVKFSPIKGSQYLCSG   83 (325)
T ss_dssp             CEEETTTTEEEEEETTEEEEEECCSSCCSSC-------------------SEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEEeCCCCCcc-------------------ceEEEeCCCCCCEEEEEEeeCCCCCEEEEE
Confidence            45789999999887554 3455655433222                   234567874 6899999998  56899999


Q ss_pred             cCCCeEEEEECCCcceeeee-------ccCCCcceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceeeeeccccc
Q 012712           80 SDDRRVILWDWKTERVKLSF-------HSGHNDNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQ  150 (458)
Q Consensus        80 ~~d~~i~iwd~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~  150 (458)
                      +.||+|+|||+..++....+       ...|.++|.+++|+|  ++++|++++.  ++.+++|+..+++.+..  +.+|.
T Consensus        84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~  159 (325)
T d1pgua1          84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWDSGNSLGE--VSGHS  159 (325)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETTTCCEEEE--CCSCS
T ss_pred             eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC--CCCccceeeccccceEEEEeeccccccee--eeecc
Confidence            99999999998765432221       246888999999999  9999887754  67899999988876655  78899


Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      ..|.+++|+|+++.++++++.|+.+++||++..+.........       .+...|.+++|+|+.+.++++++.|+.|++
T Consensus       160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~-------~~~~~v~~v~~~pd~~~~l~s~~~d~~i~i  232 (325)
T d1pgua1         160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH-------KQGSFVRDVEFSPDSGEFVITVGSDRKISC  232 (325)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS-------CTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred             cccccccccccccceEEEeecccccccccccccccceeccccc-------CCCCccEEeeeccccceeccccccccceee
Confidence            9999999999997778899999999999998776544443211       144568999999986789999999999999


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      ||+++++..                                                                       
T Consensus       233 wd~~~~~~~-----------------------------------------------------------------------  241 (325)
T d1pgua1         233 FDGKSGEFL-----------------------------------------------------------------------  241 (325)
T ss_dssp             EETTTCCEE-----------------------------------------------------------------------
T ss_pred             eeecccccc-----------------------------------------------------------------------
Confidence            998765421                                                                       


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCcccee--eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce-
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV--TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV-  387 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-  387 (458)
                                             ..+.+|....  .+.++.+  |+|++|++++.|+.|+|||++++++++.+..|... 
T Consensus       242 -----------------------~~l~~~~~~v~~~~~s~~~--~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~  296 (325)
T d1pgua1         242 -----------------------KYIEDDQEPVQGGIFALSW--LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  296 (325)
T ss_dssp             -----------------------EECCBTTBCCCSCEEEEEE--SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             -----------------------ccccccccccccceeeeec--cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc
Confidence                                   1111111110  1344444  68999999999999999999999999988766543 


Q ss_pred             -eeEEEecCC-CCeEEEeecCCcEEEecC
Q 012712          388 -VNCIEPHPH-STVLASSGIESDIKILTP  414 (458)
Q Consensus       388 -v~~~~~s~~-~~~l~s~~~d~~i~iw~~  414 (458)
                       +..+++.+. +.+|++++.||.|++||+
T Consensus       297 ~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         297 GNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence             334444433 347889999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-37  Score=264.17  Aligned_cols=288  Identities=15%  Similarity=0.162  Sum_probs=215.6

Q ss_pred             CceEEEEEecCCCEEEEecCCC-eEEEEECCCcc--eeeeeccCC-CcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc
Q 012712           62 GCVNTVSFNTDGDILISGSDDR-RVILWDWKTER--VKLSFHSGH-NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE  137 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~--~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  137 (458)
                      +.+++++|+|+++.||.++.+. .|+.|+.....  ....+ .+| ...|++++|+|..++.+|++|+.||+|++||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            3567899999999999876554 35666654332  23444 566 5689999999855778999999999999999976


Q ss_pred             ccceee------eeccccccceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          138 RGGVET------KLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       138 ~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      ++....      ..+..|..+|.+++|+|++. .+++++  .++.+++|+.++++....+..          +...+.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~~  165 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSGNSLGEVSG----------HSQRINAC  165 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTCCEEEECCS----------CSSCEEEE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCC-ccceeeccccceEEEEeecccccceeeee----------cccccccc
Confidence            654322      12446788999999999995 455443  467899999998877666542          44579999


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ  289 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~  289 (458)
                      +|+|++..++++++.|+.+++||.+..+....                                                
T Consensus       166 ~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~------------------------------------------------  197 (325)
T d1pgua1         166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS------------------------------------------------  197 (325)
T ss_dssp             EECSSSSCEEEEEETTTEEEEEETTTBEEEEE------------------------------------------------
T ss_pred             cccccccceEEEeeccccccccccccccccee------------------------------------------------
Confidence            99998666788899999999999865431000                                                


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIF  368 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~  368 (458)
                                                                 ......|..  .|.+++| +|+ +++|++++.||.|+
T Consensus       198 -------------------------------------------~~~~~~~~~--~v~~v~~-~pd~~~~l~s~~~d~~i~  231 (325)
T d1pgua1         198 -------------------------------------------DRTHHKQGS--FVRDVEF-SPDSGEFVITVGSDRKIS  231 (325)
T ss_dssp             -------------------------------------------ECSSSCTTC--CEEEEEE-CSTTCCEEEEEETTCCEE
T ss_pred             -------------------------------------------cccccCCCC--ccEEeee-ccccceecccccccccee
Confidence                                                       001112333  3788888 996 68999999999999


Q ss_pred             EEEecCCeEEEEeecCCceeeEEEec---CCCCeEEEeecCCcEEEecCCcccccc-ccccc--ccEEEEEEecCC-cEE
Q 012712          369 IWKKKGGELIRVIEADRHVVNCIEPH---PHSTVLASSGIESDIKILTPNAADRAT-LPTNI--EQVCFSIYSADY-WWS  441 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~--~~v~~~~~s~d~-~~l  441 (458)
                      +||+++++.+.++.+|..++..+.|+   |++++|++++.|+.|+|||+.++++.. +..|.  ..+..+++.+.+ .+|
T Consensus       232 iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (325)
T d1pgua1         232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI  311 (325)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred             eeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEE
Confidence            99999999999999999888777666   789999999999999999999887653 22233  234444444333 467


Q ss_pred             EeeecCCceEEEEE
Q 012712          442 KSQNFSCSILLFEW  455 (458)
Q Consensus       442 ~s~~~d~~i~~w~~  455 (458)
                      ++++.||.|++||.
T Consensus       312 ~s~s~dg~i~vwdl  325 (325)
T d1pgua1         312 ISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSCEEEEET
T ss_pred             EEEECCCEEEEEEC
Confidence            89999999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-36  Score=266.59  Aligned_cols=346  Identities=16%  Similarity=0.130  Sum_probs=231.8

Q ss_pred             eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCccee------eeeccCCCcceeEEEEc---cC--CCCeEE
Q 012712           53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK------LSFHSGHNDNVFQAKIM---PF--TDDRSI  121 (458)
Q Consensus        53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~~~~~~i~~~~~~---~~--~~~~~l  121 (458)
                      .....++|.+.|.++++++  ++|+|++.|++|+|||..+.+..      ... ..|...+..+...   +.  .+..++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEee-eeccCCceEeeeEeeeccCCCCCcEE
Confidence            4456789999999999864  68999999999999997655321      111 2344443333221   10  134577


Q ss_pred             EEEcCCCcEEEeecccccceeee--------eccccccceEEEEEcCCC----CeEEEEecCCCeEEEEeCCCCCccc--
Q 012712          122 VTCAADGQVRHAQILERGGVETK--------LLGKHQGRAHKLAIEPGS----PHVFYTCGEDGLVQHFDLRTGAATE--  187 (458)
Q Consensus       122 ~s~~~dg~i~vw~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~--  187 (458)
                      ++++.||.|++|++.........        ....+...+..++|.++.    ..++++++.||.+++|++.......  
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            89999999999998765432110        112355667788887754    2678999999999999986432111  


Q ss_pred             -------eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          188 -------LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       188 -------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                             ....... ..........+.+++|+|+ + +|++|+.|+.|++||+.+++.....         .......+|
T Consensus       163 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~---------~~~~~l~~h  230 (393)
T d1sq9a_         163 LTLNWSPTLELQGT-VESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNF---------ESQHSMINN  230 (393)
T ss_dssp             TTTCCCCEEEEEEE-ECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEE---------ECCC---CC
T ss_pred             eeeeeccceecccc-eecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeeccccccccc---------ccccccccc
Confidence                   0000000 0001113345789999997 4 8999999999999999987643221         123344568


Q ss_pred             ccceeEEEeCCCCcEEEEecCC----cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712          261 QVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY  336 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (458)
                      ..+|.+++|+|+|++|++++++    .|++||+.++.....+...                         .........+
T Consensus       231 ~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~-------------------------~~~~~~~~~~  285 (393)
T d1sq9a_         231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP-------------------------THSSQASLGE  285 (393)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------------------------CC
T ss_pred             cceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc-------------------------cccccceeee
Confidence            8999999999999999999854    3899999876432221100                         0112344556


Q ss_pred             cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee----EEEecCCCCeEEEeecCCcEEEe
Q 012712          337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN----CIEPHPHSTVLASSGIESDIKIL  412 (458)
Q Consensus       337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~----~~~~s~~~~~l~s~~~d~~i~iw  412 (458)
                      .+|...  |++++| +|++++|++|+.|++|++||+++++++.++++|.+.|.    .++|+|++..+++++.. .++.|
T Consensus       286 ~gH~~~--V~~l~f-spd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~  361 (393)
T d1sq9a_         286 FAHSSW--VMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFL  361 (393)
T ss_dssp             BSBSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE-EEEEE
T ss_pred             ecccCc--eeeecc-CCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccc-eEEEC
Confidence            688885  999999 99999999999999999999999999999999998875    58899999998766522 22222


Q ss_pred             cCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          413 TPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       413 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      .  .+.......           .....+++++.|+.|++|+-
T Consensus       362 ~--~~~~~~~~~-----------~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         362 K--KGWRSGMGA-----------DLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             C--TTTSBSTTC-----------TTSCEEEEEETTTEEEEEEE
T ss_pred             c--cCceecccc-----------CCCCEEEEEEcCCeEEEEeC
Confidence            2  222111111           12356789999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-36  Score=265.47  Aligned_cols=302  Identities=11%  Similarity=0.079  Sum_probs=216.0

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee--ccCCCcceeEEEEccCCC-CeEEEEEcCCC
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF--HSGHNDNVFQAKIMPFTD-DRSIVTCAADG  128 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg  128 (458)
                      ++++.+++|++.|++|+|+|++++||+|+.|++|+|||++.+.....+  ..+|..+|.+++|+|  + +.+|++|+.||
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~--~~~~~l~sg~~d~   79 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID--NTDLQIYVGTVQG   79 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE--SSSEEEEEEETTS
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC--CCCCEEEEccccc
Confidence            456678899999999999999999999999999999999766543222  136999999999998  5 56899999999


Q ss_pred             cEEEeecccccceeeeeccccc-cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712          129 QVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN  207 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~  207 (458)
                      .|++|++........  ...+. .......+.++. ..+++++.++.+++||++.+............    +.......
T Consensus        80 ~v~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~----~~~~~~~~  152 (342)
T d1yfqa_          80 EILKVDLIGSPSFQA--LTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNTKVKNK  152 (342)
T ss_dssp             CEEEECSSSSSSEEE--CBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SSSSSCCC
T ss_pred             ceeeeeccccccccc--cccccccccccccccccc-ccccccccccccceeeccccccceeeeccccc----ccccceee
Confidence            999999988776554  33333 333444455555 67899999999999999876554433321111    11122234


Q ss_pred             EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEE
Q 012712          208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF  287 (458)
Q Consensus       208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~  287 (458)
                      .+.+.+. +..+++++.|+.|++||++..+....                      .   .                   
T Consensus       153 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~----------------------~---~-------------------  187 (342)
T d1yfqa_         153 IFTMDTN-SSRLIVGMNNSQVQWFRLPLCEDDNG----------------------T---I-------------------  187 (342)
T ss_dssp             EEEEEEC-SSEEEEEESTTEEEEEESSCCTTCCC----------------------E---E-------------------
T ss_pred             eeeeecc-CCceeeecCCCcEEEEecccCcccce----------------------e---e-------------------
Confidence            4555565 56888899999999999876542100                      0   0                   


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                                                                     .......  ...+..+++.++..+++++.||.+
T Consensus       188 -----------------------------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~  218 (342)
T d1yfqa_         188 -----------------------------------------------EESGLKY--QIRDVALLPKEQEGYACSSIDGRV  218 (342)
T ss_dssp             -----------------------------------------------EECSCSS--CEEEEEECSGGGCEEEEEETTSEE
T ss_pred             -----------------------------------------------eeccccc--ceeeeEeecCCCCEEEeecCCCeE
Confidence                                                           0000001  123333336677888899999999


Q ss_pred             EEEEecCCeEE---------E------EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEE
Q 012712          368 FIWKKKGGELI---------R------VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFS  432 (458)
Q Consensus       368 ~iwd~~~~~~~---------~------~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~  432 (458)
                      .+|+.......         .      ....|...+++++|+|++++||+|+.||.|++||+.+++++....+...+..+
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~  298 (342)
T d1yfqa_         219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV  298 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred             EEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEE
Confidence            99987543211         1      11345667999999999999999999999999999998877544444566678


Q ss_pred             EEecCCcEEEeeecCCceEEEEEe
Q 012712          433 IYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       433 ~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      +|+|+|++|++++.|+.+++|...
T Consensus       299 ~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         299 KIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEECSSEEEEEEECTHHHHCSSS
T ss_pred             EEEeCCCEEEEEEcCCcEEEeeee
Confidence            899999999999999888777654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-36  Score=255.05  Aligned_cols=270  Identities=16%  Similarity=0.191  Sum_probs=207.7

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      +++++|+||.++|++++|+|    |+||+.||+|++||+.++.      .+|...|.++.+++  + ..+++++.|++++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~--~-~~~~s~s~D~~v~   70 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSK--A-QEYSSISWDDTLK   70 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCS--T-TCCEEEETTTEEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecC--C-CeEEEEeeccccc
Confidence            56788999999999999987    9999999999999987643      47999999999986  5 5689999999999


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI  211 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  211 (458)
                      +|++...+         +...+..+++++++ ..+++ +.++.+.+|+..+++....+..           ...+  .++
T Consensus        71 ~w~~~~~~---------~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--~~~  126 (287)
T d1pgua2          71 VNGITKHE---------FGSQPKVASANNDG-FTAVL-TNDDDLLILQSFTGDIIKSVRL-----------NSPG--SAV  126 (287)
T ss_dssp             ETTEEEEE---------CSSCEEEEEECSSS-EEEEE-ETTSEEEEEETTTCCEEEEEEC-----------SSCE--EEE
T ss_pred             cccccccc---------cccceeeeeeccCC-ceEEE-eecccceeeeccceeeeeeccc-----------ccee--eee
Confidence            99975432         23456778889887 55554 4566788999998887766542           1223  345


Q ss_pred             CCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEc
Q 012712          212 DPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ  289 (458)
Q Consensus       212 ~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~  289 (458)
                      +|+ +..+++++.+ +.+++|++...+..              ......+...+++++|+|++.+|++++ ++.|++||+
T Consensus       127 ~~~-~~~~~v~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  191 (287)
T d1pgua2         127 SLS-QNYVAVGLEEGNTIQVFKLSDLEVS--------------FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL  191 (287)
T ss_dssp             EEC-SSEEEEEETTTSCEEEEETTEEEEE--------------EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ecc-Ccceeeeccccceeeeeecccccee--------------eeeeeccCCceeEEEeccCccccccccccccccceee
Confidence            555 4566666655 57999998765421              122334567899999999999999988 558999998


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC----------CCcEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP----------KCEYVV  359 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~----------~~~~l~  359 (458)
                      .++.                                     .....+.+|...  |.+++| +|          ++.+|+
T Consensus       192 ~~~~-------------------------------------~~~~~~~~h~~~--v~~~~~-~p~~~~~~~~~~~~~~l~  231 (287)
T d1pgua2         192 QSRE-------------------------------------VKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVA  231 (287)
T ss_dssp             TTTE-------------------------------------EEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEE
T ss_pred             cccc-------------------------------------cccccccccccc--cceeee-cccccccccccCCCCeeE
Confidence            7642                                     112234456553  778877 65          456899


Q ss_pred             EecCCCeEEEEEecC-CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          360 SGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       360 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      +|+.|++|++||+++ .+.+..+.+|.+.|++++|+|++ .|++++.|+.|++|++
T Consensus       232 sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999999999999976 56777888999999999999986 5889999999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-34  Score=242.11  Aligned_cols=279  Identities=21%  Similarity=0.288  Sum_probs=211.5

Q ss_pred             eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      ++.++....|...|+|++  +||++||||+.||+|+|||+.+++++..+ .+|...|++++|    ++++|++++.|+.|
T Consensus         5 ~~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~v~~----~~~~l~s~s~D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY----DERVIITGSSDSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC----CSSEEEEEETTSCE
T ss_pred             EEEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEeeeec----ccceeecccccccc
Confidence            344555678889999875  57999999999999999999999998887 799999999887    56799999999999


Q ss_pred             EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      ++|++..+.....  ...+....  ..+.+.. ..++++..++.+.+||...............       +...+..+.
T Consensus        78 ~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~  145 (293)
T d1p22a2          78 RVWDVNTGEMLNT--LIHHCEAV--LHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVG-------HRAAVNVVD  145 (293)
T ss_dssp             EEEESSSCCEEEE--ECCCCSCE--EEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECC-------CSSCEEEEE
T ss_pred             ccccccccccccc--cccccccc--ccccccc-cceeecccccceeEeeccccccccccccccc-------cccccccce
Confidence            9999988776554  22222222  2333444 4678899999999999987765444332211       344577777


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEc
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQ  289 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~  289 (458)
                      +.+   ..+++++.|+.|++||+++.+..               .....+...+..+.++  +.++++++ ++.|++||+
T Consensus       146 ~~~---~~~~~~s~d~~i~~~d~~~~~~~---------------~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~  205 (293)
T d1p22a2         146 FDD---KYIVSASGDRTIKVWNTSTCEFV---------------RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI  205 (293)
T ss_dssp             EET---TEEEEEETTSEEEEEETTTCCEE---------------EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             ecc---cccccccCCCceeeecCCCCcEE---------------EEEcccccccccccCC--CCeEEEecCCCEEEEEec
Confidence            765   47888999999999999887532               2233445567777665  45677766 668999999


Q ss_pred             cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712          290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI  369 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i  369 (458)
                      .+                                      ......+.++...  +..  + ++++.+|++|+.||.|++
T Consensus       206 ~~--------------------------------------~~~~~~~~~~~~~--v~~--~-~~~~~~l~sg~~dg~i~i  242 (293)
T d1p22a2         206 EC--------------------------------------GACLRVLEGHEEL--VRC--I-RFDNKRIVSGAYDGKIKV  242 (293)
T ss_dssp             TT--------------------------------------CCEEEEECCCSSC--EEE--E-ECCSSEEEEEETTSCEEE
T ss_pred             cc--------------------------------------ceeeeeeccccee--eee--c-cccceEEEEEcCCCEEEE
Confidence            87                                      3344555666553  333  3 678899999999999999


Q ss_pred             EEecC---------CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712          370 WKKKG---------GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT  413 (458)
Q Consensus       370 wd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~  413 (458)
                      ||+..         ..++..+.+|.+.|++++|  ++++|++++.||+|+|||
T Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            99753         3467889999999999999  467899999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2.6e-36  Score=265.64  Aligned_cols=321  Identities=8%  Similarity=-0.017  Sum_probs=227.6

Q ss_pred             CCC-CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC--
Q 012712            6 NNN-NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD--   82 (458)
Q Consensus         6 ~~~-~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--   82 (458)
                      ||| ||+++|+++ +|.|++||.++|+.++                       .+|...|.+++|+|||++|++++.+  
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-----------------------~~~~~~v~~~~~spDg~~l~~~~~~~g   65 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-----------------------VPEPLRIRYVRRGGDTKVAFIHGTREG   65 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTSSBEEE-----------------------CSCCSCEEEEEECSSSEEEEEEEETTE
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCCCcEEE-----------------------ccCCCCEEEEEECCCCCEEEEEEcCCC
Confidence            788 999999987 6799999999776541                       2699999999999999999877655  


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS  162 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (458)
                      ..|++||+++++.. .+ ..|...|.+++|+|  ++++|++++.++.+++|++.+++....  +..|...+.+++|+|++
T Consensus        66 ~~v~v~d~~~~~~~-~~-~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg  139 (360)
T d1k32a3          66 DFLGIYDYRTGKAE-KF-EENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVI--ERSREAMITDFTISDNS  139 (360)
T ss_dssp             EEEEEEETTTCCEE-EC-CCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEE--EECSSSCCCCEEECTTS
T ss_pred             CEEEEEECCCCcEE-Ee-eCCCceEEeeeecc--cccccceeccccccccccccccceeee--eecccccccchhhccce
Confidence            37999999887764 33 58999999999999  999999999999999999988776554  67788899999999999


Q ss_pred             CeEEEEe----------cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          163 PHVFYTC----------GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       163 ~~~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      . +|+.+          ..++.+++||+.+++......           +...+..++|+|+ ++.|++++.++.+.+||
T Consensus       140 ~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-----------~~~~~~~~~~spd-g~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         140 R-FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-----------ENSHDYAPAFDAD-SKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             C-EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-----------SSSBEEEEEECTT-SCEEEEEESCCCCCEEC
T ss_pred             e-eeeeeccccccceeeccccceeeeccccCceeeecc-----------cccccccccccCC-CCEEEEEeCCCceEccc
Confidence            4 55533          344579999999876544332           3345788999998 78999999999999999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEccCCCCCCCCCCCCcccccc
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      ...........        ........+...+..+.|++++..++++...    ..++|.+...                
T Consensus       207 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  262 (360)
T d1k32a3         207 RVVLNFSFEVV--------SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD----------------  262 (360)
T ss_dssp             SSSSCEECCSC--------BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC----------------
T ss_pred             ccccceeeccc--------cceEEEecccCccccceECCCcCcccccceeecccccceeecccC----------------
Confidence            86654211100        0000111122334445566666555433211    1112221110                


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE--ecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF--FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH  386 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (458)
                                           ......+..+...  +..+.+  .++++.++++++.++.|++||+.+++..    .|.+
T Consensus       263 ---------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~  315 (360)
T d1k32a3         263 ---------------------PGDYRMIIPLESS--ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKN  315 (360)
T ss_dssp             ---------------------CBCEEEEEECSSE--EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEE
T ss_pred             ---------------------cCceeEeeecCCC--ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecC
Confidence                                 0111222222222  222332  1444557788889999999999887643    2445


Q ss_pred             eeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          387 VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      .|.+++|||||++|++++.||.|++|+++.++..
T Consensus       316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred             CcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence            6899999999999999999999999999987654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-35  Score=262.00  Aligned_cols=307  Identities=11%  Similarity=0.096  Sum_probs=211.6

Q ss_pred             eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee----eeeccccccce------EEEEEcCCCCeEEEE
Q 012712           99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE----TKLLGKHQGRA------HKLAIEPGSPHVFYT  168 (458)
Q Consensus        99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~v------~~~~~~~~~~~~l~s  168 (458)
                      ..++|...|.++++++    +++++++.|++|++||..+.+...    ......|...+      ..+..++....++++
T Consensus         9 ~~~~H~~~I~~v~~~~----~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             ESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC----CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            4479999999999854    589999999999999976544211    11111232222      222333322256789


Q ss_pred             ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC----CcEEEEecCCCeEEEEecCCCccCCCccC
Q 012712          169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN----ANLFAVAGSDEYTRLYDIRKYKWDGSTDF  244 (458)
Q Consensus       169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  244 (458)
                      ++.||.|++|++.........................+..+++.++.    +.++++++.||.+++|++...........
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            99999999999876655444433222222222244456777777652    36889999999999999864421110000


Q ss_pred             ---CCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712          245 ---GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA  320 (458)
Q Consensus       245 ---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
                         ...............+...+.+++|+|++ +|++++ |+.|++||+.+++....                       
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~-----------------------  220 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN-----------------------  220 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE-----------------------
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccc-----------------------
Confidence               00000000111122344568899999998 777877 55899999987432211                       


Q ss_pred             CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC---eEEEEEecCCeEEEEee-------------cC
Q 012712          321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIE-------------AD  384 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~-------------~~  384 (458)
                               ......+.+|...  |.+++| +|+|++|++|+.|+   .|++||+++++++..+.             +|
T Consensus       221 ---------~~~~~~l~~h~~~--V~~l~~-spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH  288 (393)
T d1sq9a_         221 ---------FESQHSMINNSNS--IRSVKF-SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  288 (393)
T ss_dssp             ---------EECCC---CCCCC--EEEEEE-CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             ---------cccccccccccce--EEEccc-ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc
Confidence                     2233455677775  999999 99999999999886   59999999998887764             79


Q ss_pred             CceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEE----EEEEecCCcEEEeee
Q 012712          385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVC----FSIYSADYWWSKSQN  445 (458)
Q Consensus       385 ~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~----~~~~s~d~~~l~s~~  445 (458)
                      .+.|++++|+||+++|++++.|++|++||+++++++ .+.+|.+.|.    .++|+|++..+++++
T Consensus       289 ~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             cCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            999999999999999999999999999999999776 6678888765    588999998887655

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=245.58  Aligned_cols=268  Identities=13%  Similarity=0.121  Sum_probs=205.1

Q ss_pred             ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC
Q 012712           94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG  173 (458)
Q Consensus        94 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  173 (458)
                      ++++.+ .+|..+|++++|+|      |++|+.||+|++||+.++       ...|...|.++.++++.  .+++++.|+
T Consensus         4 ~~i~~l-~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~~--~~~s~s~D~   67 (287)
T d1pgua2           4 EVLKTI-SGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKAQ--EYSSISWDD   67 (287)
T ss_dssp             EEEEEE-CCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCSTT--CCEEEETTT
T ss_pred             ceeEEE-CCCCCceEEEEECc------EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCCC--eEEEEeecc
Confidence            455555 89999999999986      899999999999998653       35689999999999875  479999999


Q ss_pred             eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712          174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP  253 (458)
Q Consensus       174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  253 (458)
                      ++++|++...+                 ....+.+++++++ +..++++ .++.+.+|+..+.+.....           
T Consensus        68 ~v~~w~~~~~~-----------------~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------  117 (287)
T d1pgua2          68 TLKVNGITKHE-----------------FGSQPKVASANND-GFTAVLT-NDDDLLILQSFTGDIIKSV-----------  117 (287)
T ss_dssp             EEEETTEEEEE-----------------CSSCEEEEEECSS-SEEEEEE-TTSEEEEEETTTCCEEEEE-----------
T ss_pred             ccccccccccc-----------------cccceeeeeeccC-CceEEEe-ecccceeeeccceeeeeec-----------
Confidence            99999976432                 1124677888886 5555554 5667889988876532221           


Q ss_pred             CccccccccceeEEEeCCCCcEEEEec-CC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712          254 PNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI  331 (458)
Q Consensus       254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (458)
                             .......++++++..+++++ ++ .+++|++...                                      .
T Consensus       118 -------~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~--------------------------------------~  152 (287)
T d1pgua2         118 -------RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL--------------------------------------E  152 (287)
T ss_dssp             -------ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE--------------------------------------E
T ss_pred             -------cccceeeeeeccCcceeeeccccceeeeeecccc--------------------------------------c
Confidence                   11122345667777777666 44 6999998652                                      1


Q ss_pred             Cceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE-EeecCCceeeEEEecCC----------CCe
Q 012712          332 APQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR-VIEADRHVVNCIEPHPH----------STV  399 (458)
Q Consensus       332 ~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~----------~~~  399 (458)
                      ....+ ..+..  .+.+++| +|++++|++|+.||.|++||+.+++... .+.+|...|.+++|+|+          +.+
T Consensus       153 ~~~~~~~~~~~--~v~~~~~-s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         153 VSFDLKTPLRA--KPSYISI-SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             EEEECSSCCSS--CEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred             eeeeeeeccCC--ceeEEEe-ccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCe
Confidence            11222 22333  3889998 9999999999999999999999988765 46789999999999875          468


Q ss_pred             EEEeecCCcEEEecCCcc-ccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712          400 LASSGIESDIKILTPNAA-DRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL  456 (458)
Q Consensus       400 l~s~~~d~~i~iw~~~~~-~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~  456 (458)
                      |++|+.|++|++|++..+ +.. .+.+|...|++++|+|++. |++++.|+.|++|+.+
T Consensus       230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i~  287 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  287 (287)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEEC
Confidence            999999999999999764 333 4567999999999999975 7799999999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=3.2e-34  Score=256.23  Aligned_cols=346  Identities=10%  Similarity=-0.003  Sum_probs=250.8

Q ss_pred             eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC
Q 012712           12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK   91 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~   91 (458)
                      ++++.+.||.|.|||.++++++.                     ++..| ..+..++|||||++|++++.|+.|++||+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~---------------------~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~   91 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKT---------------------VLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLW   91 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEE---------------------EEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             EEEEEcCCCEEEEEECCCCcEEE---------------------EEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEee
Confidence            36899999999999999998874                     46666 469999999999999999999999999998


Q ss_pred             Cccee--eeec--cCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeec---------cccccceEEEE
Q 012712           92 TERVK--LSFH--SGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLL---------GKHQGRAHKLA  157 (458)
Q Consensus        92 ~~~~~--~~~~--~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~---------~~~~~~v~~~~  157 (458)
                      +++..  ..+.  ..|.+.+.++.|+|  ||++| ++++.++.|++||..+++.+.....         ..+......+.
T Consensus        92 t~~~~~~~~i~~~~~~~~~~~s~~~Sp--DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (432)
T d1qksa2          92 MKEPTTVAEIKIGSEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  169 (432)
T ss_dssp             SSSCCEEEEEECCSEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             CCCceEEEEEecCCCCCCeEEecccCC--CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEE
Confidence            87642  2221  34556677778888  99976 6777899999999998876654211         12345567889


Q ss_pred             EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                      ++|+++.++++...++.|.+||..+.+........         ....+..++|+|++..+++++..++.+.++|..+.+
T Consensus       170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~---------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         170 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             ECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc---------ccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            99999777788888999999999887755443322         223578999999954445555566789999998876


Q ss_pred             cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712          238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD  315 (458)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (458)
                      .......+.          ...+........+...+...++..  ++.+.+|+.....                      
T Consensus       241 ~~~~~~~g~----------~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----------------------  288 (432)
T d1qksa2         241 LVAIEDTGG----------QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----------------------  288 (432)
T ss_dssp             EEEEEECSS----------SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----------------------
T ss_pred             EEEEeccCc----------cccccCcccceecCCCCceecccccCCceEEeccccccc----------------------
Confidence            543322111          111233344455555666666655  4468888765421                      


Q ss_pred             CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC
Q 012712          316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP  395 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  395 (458)
                                          ...|..  .+....+ +|++..+++++.++..++|+..+..      .|.....++++ |
T Consensus       289 --------------------~~~~~~--~v~~~~~-~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p  338 (432)
T d1qksa2         289 --------------------HPDNAW--KILDSFP-ALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F  338 (432)
T ss_dssp             --------------------CTTTBT--SEEEEEE-CSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E
T ss_pred             --------------------cccccc--EEEEEEE-cCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E
Confidence                                122322  2666777 9999999999999999999875432      34444556665 9


Q ss_pred             CCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeee-----cCCceEEEE
Q 012712          396 HSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQN-----FSCSILLFE  454 (458)
Q Consensus       396 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-----~d~~i~~w~  454 (458)
                      |++.|++++.|+.+++|++.++.  .+..|..++.+++|||||++++.+.     .++.|.|||
T Consensus       339 Dg~~la~~s~d~~~k~w~~~~~~--~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         339 DIKAMTGDGSDPEFKTLPIAEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             EGGGCCCSSSCCCEEEECHHHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             echhhcccccCCceEeccccccc--ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            99999999999999999986553  4456778899999999998875543     467788887

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-33  Score=244.51  Aligned_cols=314  Identities=10%  Similarity=0.051  Sum_probs=222.8

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-CEEEEecC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSD   81 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~   81 (458)
                      ++.|+|++++||+|+.||+|+|||++++.....                  .....+|.++|.+++|+|++ .+|++|+.
T Consensus        16 ~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~------------------~~~~~~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_          16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD------------------LLQSLRYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE------------------EEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred             EEEEeCCCCEEEEEECCCeEEEEEccCCCcceE------------------EEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence            567899999999999999999999986654321                  12234699999999999864 68999999


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee--eccc--cccceEEEE
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK--LLGK--HQGRAHKLA  157 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~--~~~~--~~~~v~~~~  157 (458)
                      |+.|++|++..+.........+........+.+  +...+++++.++.+++||++........  ....  .........
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKY--GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE--TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred             ccceeeeeccccccccccccccccccccccccc--ccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence            999999999988776666444555555666677  8889999999999999999765543221  1111  223344566


Q ss_pred             EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712          158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK  237 (458)
Q Consensus       158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  237 (458)
                      +.+.+ ..+++++.|+.|++||++..+..........       ......+..+.+.++..+++++.||.+.+|+.....
T Consensus       156 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~  227 (342)
T d1yfqa_         156 MDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESG-------LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             EEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECS-------CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             eeccC-CceeeecCCCcEEEEecccCcccceeeeecc-------cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCc
Confidence            66766 6789999999999999988776554433221       222456666666657899999999999999987653


Q ss_pred             cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712          238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT  317 (458)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (458)
                      ....                .   ......                    ..                            
T Consensus       228 ~~~~----------------~---~~~~~~--------------------~~----------------------------  240 (342)
T d1yfqa_         228 DDYN----------------S---SKRFAF--------------------RC----------------------------  240 (342)
T ss_dssp             CSTT----------------C---TTCEEE--------------------EC----------------------------
T ss_pred             ceee----------------c---ccccee--------------------ee----------------------------
Confidence            2110                0   000000                    00                            


Q ss_pred             cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712          318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS  397 (458)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (458)
                                  ........+|..  .+.+++| +|++++|++|+.||.|++||+.+++.+.++..+ ..+..++|+|++
T Consensus       241 ------------~~~~~~~~~~~~--~v~~l~~-sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~  304 (342)
T d1yfqa_         241 ------------HRLNLKDTNLAY--PVNSIEF-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSD  304 (342)
T ss_dssp             ------------CCCCTTCCSSCC--CEEEEEE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECS
T ss_pred             ------------eeeccCCCcccc--cceeEEe-cCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCC
Confidence                        000111223333  3789998 999999999999999999999999999888643 234567788899


Q ss_pred             CeEEEeecCCcEEEecCCcccccccccccccEE
Q 012712          398 TVLASSGIESDIKILTPNAADRATLPTNIEQVC  430 (458)
Q Consensus       398 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~  430 (458)
                      ++|++++.|+.+++|.....   .+..|...|.
T Consensus       305 ~~l~~a~sdd~~~~~~~~~~---~~~~~~~~i~  334 (342)
T d1yfqa_         305 NILCLATSDDTFKTNAAIDQ---TIELNASSIY  334 (342)
T ss_dssp             SEEEEEEECTHHHHCSSSCT---TSCCCCCEEE
T ss_pred             CEEEEEEcCCcEEEeeeeCC---CccCCCCeEE
Confidence            99999999999998875433   2333444444

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-33  Score=237.07  Aligned_cols=271  Identities=20%  Similarity=0.267  Sum_probs=208.9

Q ss_pred             cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712          101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL  180 (458)
Q Consensus       101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  180 (458)
                      ..|...|+|+.  +  ++++||+|+.||.|++||+.+++.+..  +.+|...|.+++|+  + ++|++++.|+.|++|++
T Consensus        12 ~~~~~~V~c~~--~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          12 SETSKGVYCLQ--Y--DDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CSSCCCEEEEE--C--CSSEEEEEESSSCEEEEESSSCCEEEE--ECCCSSCEEEEECC--S-SEEEEEETTSCEEEEES
T ss_pred             CCCCCCEEEEE--E--cCCEEEEEeCCCeEEEEECCCCcEEEE--EecCCCCEeeeecc--c-ceeeccccccccccccc
Confidence            56788898865  4  889999999999999999998887765  88999999999884  4 68999999999999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      ..+.........            ......+.+. ...++++..++.+.+|+.........            ......+
T Consensus        83 ~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  137 (293)
T d1p22a2          83 NTGEMLNTLIHH------------CEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITL------------RRVLVGH  137 (293)
T ss_dssp             SSCCEEEEECCC------------CSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEE------------EEEECCC
T ss_pred             cccccccccccc------------cccccccccc-ccceeecccccceeEeeccccccccc------------ccccccc
Confidence            988765554321            1122233343 46888999999999999987652211            2233445


Q ss_pred             ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712          261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH  339 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                      ...+..+.+.++  .+++++ ++.+++||..+                                      .+....+.++
T Consensus       138 ~~~v~~~~~~~~--~~~~~s~d~~i~~~d~~~--------------------------------------~~~~~~~~~~  177 (293)
T d1p22a2         138 RAAVNVVDFDDK--YIVSASGDRTIKVWNTST--------------------------------------CEFVRTLNGH  177 (293)
T ss_dssp             SSCEEEEEEETT--EEEEEETTSEEEEEETTT--------------------------------------CCEEEEEECC
T ss_pred             ccccccceeccc--ccccccCCCceeeecCCC--------------------------------------CcEEEEEccc
Confidence            667777776654  445554 66899999987                                      3445566666


Q ss_pred             cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc-
Q 012712          340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD-  418 (458)
Q Consensus       340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~-  418 (458)
                      ...  +..+.+   ++.++++++.||.|++||+.+.+.+..+.+|...+..  +++++.+|++++.||.|++||+.... 
T Consensus       178 ~~~--v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~  250 (293)
T d1p22a2         178 KRG--IACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALD  250 (293)
T ss_dssp             SSC--EEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTS
T ss_pred             ccc--cccccC---CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCcc
Confidence            654  555554   5679999999999999999999999999998887765  45678999999999999999976432 


Q ss_pred             ---------ccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          419 ---------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       419 ---------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                               ...+.+|.+.|++++|  |+.+|+|++.||+|+|||
T Consensus       251 ~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         251 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             ccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence                     2245678889999988  567899999999999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3e-34  Score=257.45  Aligned_cols=344  Identities=11%  Similarity=0.025  Sum_probs=228.6

Q ss_pred             eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC
Q 012712           12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK   91 (458)
Q Consensus        12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~   91 (458)
                      ++++.++||.|+|||..+++++.                     ++..|. .+..++|||||++|++++.|++|++||+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~---------------------~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~   91 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVK---------------------VIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLW   91 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEE---------------------EEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             EEEEEcCCCEEEEEECCCCcEEE---------------------EEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEcc
Confidence            46788899999999999998774                     477664 58999999999999999999999999999


Q ss_pred             Ccceeee--e--ccCCCcceeEEEEccCCCCeEEEEE-cCCCcEEEeecccccceeeeeccccccc-----------eEE
Q 012712           92 TERVKLS--F--HSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGR-----------AHK  155 (458)
Q Consensus        92 ~~~~~~~--~--~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----------v~~  155 (458)
                      +++....  +  ..+|...+.+++|+|  ||++++++ ..++.+++||..++.....  +..|...           ...
T Consensus        92 t~~~~~~~~i~~~~~~~~~~~s~~~sp--DG~~l~v~~~~~~~v~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          92 AKEPTKVAEIKIGIEARSVESSKFKGY--EDRYTIAGAYWPPQFAIMDGETLEPKQI--VSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             SSSCEEEEEEECCSEEEEEEECCSTTC--TTTEEEEEEEESSEEEEEETTTCCEEEE--EECCEECSSSCCEESCCCEEE
T ss_pred             CCceeEEEEEeCCCCCcceEEeeeecC--CCCEEEEeecCCCeEEEEcCCccceeEE--eeccCCCccceeecCCCceeE
Confidence            8875332  2  135666777888899  99987554 5789999999988876554  3333333           344


Q ss_pred             EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712          156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      +.+++++..++++....+.+.+++.............         ....+..+.|+|++..++++...+..+.+++..+
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---------AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE---------CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEec---------cCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence            5555665444444444555555555544432221111         3345789999998655555566777899999998


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEe-c-CCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSY-N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASE  311 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
                      .+.......+..             ........+.+.  +...+.. . ++.+.+|+.........              
T Consensus       239 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~--------------  291 (426)
T d1hzua2         239 RRLSALVDVGKT-------------PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY--------------  291 (426)
T ss_dssp             TEEEEEEECSSC-------------CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT--------------
T ss_pred             ccEEEEeccCCc-------------ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccc--------------
Confidence            875443222111             111112222222  2222222 2 34567776654321110              


Q ss_pred             cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-------ecCCCeEEEEEecCCeEEEEee--
Q 012712          312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-------GSDCGRIFIWKKKGGELIRVIE--  382 (458)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~--  382 (458)
                                       ..+....+.+|...  +..++| +||+++|++       ++.+++|++||+.++++..++.  
T Consensus       292 -----------------~~~~~~~l~g~~~~--v~~v~~-sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~  351 (426)
T d1hzua2         292 -----------------AWKKVAELQGQGGG--SLFIKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI  351 (426)
T ss_dssp             -----------------BTSEEEEEECSSSC--CCCEEC-CTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred             -----------------cceEeEEEecCCCc--eeEEEc-CCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc
Confidence                             13455677788764  788898 999999994       5667899999999987765542  


Q ss_pred             -------cCCceeeEEEecCCCCeEE-Ee----ecCCcEEEecCCcccccccccccccEEEEEEecCCcEEE
Q 012712          383 -------ADRHVVNCIEPHPHSTVLA-SS----GIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSK  442 (458)
Q Consensus       383 -------~~~~~v~~~~~s~~~~~l~-s~----~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  442 (458)
                             .|...|..++|||||++++ ++    +.++.|+|||..+.+.........     .++|+|++.+
T Consensus       352 ~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~-----~~tp~Gk~~~  418 (426)
T d1hzua2         352 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR-----LITPTGKFNV  418 (426)
T ss_dssp             HHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEEEEEH
T ss_pred             chhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC-----ccCCCceEeE
Confidence                   3455689999999999764 32    468899999999987664332221     4568887754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.7e-33  Score=247.40  Aligned_cols=315  Identities=12%  Similarity=0.008  Sum_probs=227.7

Q ss_pred             EEEEec-CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--cEEEeeccccccee
Q 012712           66 TVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--QVRHAQILERGGVE  142 (458)
Q Consensus        66 ~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~~~~~  142 (458)
                      .-.||| ||+++|+++. +.|++||++++.... +  +|...|.+++|+|  ||+.|++++.+.  .|++||+.+++...
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~--~~~~~v~~~~~sp--Dg~~l~~~~~~~g~~v~v~d~~~~~~~~   80 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V--PEPLRIRYVRRGG--DTKVAFIHGTREGDFLGIYDYRTGKAEK   80 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C--SCCSCEEEEEECS--SSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c--cCCCCEEEEEECC--CCCEEEEEEcCCCCEEEEEECCCCcEEE
Confidence            467999 9999998875 799999998877643 3  6899999999999  999998877653  79999998765433


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA  222 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  222 (458)
                         +..|...+.+++|+|++ ++|++++.++.+++|++.+++....+..          +...+.+++|+|+ +++|+.+
T Consensus        81 ---~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~spd-g~~la~~  145 (360)
T d1k32a3          81 ---FEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERS----------REAMITDFTISDN-SRFIAYG  145 (360)
T ss_dssp             ---CCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEEC----------SSSCCCCEEECTT-SCEEEEE
T ss_pred             ---eeCCCceEEeeeecccc-cccceeccccccccccccccceeeeeec----------ccccccchhhccc-eeeeeee
Confidence               67799999999999999 6899999999999999999887666543          3346788999998 6777754


Q ss_pred             ----------cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccC
Q 012712          223 ----------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDM  291 (458)
Q Consensus       223 ----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~  291 (458)
                                ..++.+++||+.+++.                .....+...+..++|+|+|+.|++++. +.+.+|+...
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~~~----------------~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGRKI----------------FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTTEE----------------EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ccccccceeeccccceeeeccccCce----------------eeecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence                      3445699999987652                122234567888999999999998884 5788998654


Q ss_pred             CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC-----e
Q 012712          292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-----R  366 (458)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-----~  366 (458)
                      .......                               ......+..+...  ...+.+ +++++.++++..+.     .
T Consensus       210 ~~~~~~~-------------------------------~~~~~~~~~~~~~--~~~~~~-s~~~~~~~~~~~~~~~~~~~  255 (360)
T d1k32a3         210 LNFSFEV-------------------------------VSKPFVIPLIPGS--PNPTKL-VPRSMTSEAGEYDLNDMYKR  255 (360)
T ss_dssp             SCEECCS-------------------------------CBEEEEEESSTTC--CCGGGC-CCGGGSCCCCCCCCTTGGGG
T ss_pred             cceeecc-------------------------------ccceEEEecccCc--cccceE-CCCcCcccccceeecccccc
Confidence            3211100                               0011111222221  222334 77777666554332     2


Q ss_pred             EEEEEecCCeEEEEeecCCceeeEEEecCCC---CeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEe
Q 012712          367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHS---TVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKS  443 (458)
Q Consensus       367 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  443 (458)
                      +..++...+. ...+..+.+.+..+.+.+.+   .++++++.++.|++||+.+++..   .+.+.|.+++|||||++|++
T Consensus       256 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~v~~~~~SpDG~~l~~  331 (360)
T d1k32a3         256 SSPINVDPGD-YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---EVKNNLTDLRLSADRKTVMV  331 (360)
T ss_dssp             CEECSCCCBC-EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---EEEEEEEEEEECTTSCEEEE
T ss_pred             eeecccCcCc-eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE---EecCCcCEEEECCCCCEEEE
Confidence            4444444433 33444555556666665544   47888999999999999887654   44567999999999999999


Q ss_pred             eecCCceEEEEE
Q 012712          444 QNFSCSILLFEW  455 (458)
Q Consensus       444 ~~~d~~i~~w~~  455 (458)
                      ++.||.|++||.
T Consensus       332 ~~~Dg~i~v~d~  343 (360)
T d1k32a3         332 RKDDGKIYTFPL  343 (360)
T ss_dssp             EETTSCEEEEES
T ss_pred             EECCCeEEEEEC
Confidence            999999999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.1e-30  Score=234.05  Aligned_cols=326  Identities=11%  Similarity=0.045  Sum_probs=222.4

Q ss_pred             CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee---ccccc
Q 012712           74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL---LGKHQ  150 (458)
Q Consensus        74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~---~~~~~  150 (458)
                      .++++.+.|++|+|||+.+++.+..+ ..| ..+..++|+|  ||++|++++.|+.|++||+.+++......   ..+|.
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l-~~g-~~~~~vafSP--DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~  108 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVI-DTG-YAVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR  108 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEE-ECC-SSEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECC--CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc
Confidence            35688899999999999999998888 444 4689999999  99999999999999999999887543322   34577


Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC-CcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR  229 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  229 (458)
                      ..+.+++|+|||..+++++..++.+.+||..++.............. ...........+.+++++..++.+....+.+.
T Consensus       109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~  188 (426)
T d1hzua2         109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  188 (426)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            77788899999966667777899999999999987766553321110 11112234456677777544444555556676


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--CcEEEEEccCCCCCCCCCCCCccccc
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRS  307 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~  307 (458)
                      +++.......              ......+...+..++|+|+++++.++..  +.+.+++..+....            
T Consensus       189 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~------------  242 (426)
T d1hzua2         189 LVNYKDIDNL--------------TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS------------  242 (426)
T ss_dssp             EEECSSSSSC--------------EEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE------------
T ss_pred             EEEeccccce--------------eeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE------------
Confidence            6666554311              1112234567889999999998887763  36889998774321            


Q ss_pred             cccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEE--EEecCCCeEEEEEec-------CCeEE
Q 012712          308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV--VSGSDCGRIFIWKKK-------GGELI  378 (458)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l--~~~~~dg~i~iwd~~-------~~~~~  378 (458)
                                                ................+..+....+  +..+.|+.+.+|+..       .++..
T Consensus       243 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~  296 (426)
T d1hzua2         243 --------------------------ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  296 (426)
T ss_dssp             --------------------------EEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred             --------------------------EEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence                                      1111100000011111112222212  233456666666653       34788


Q ss_pred             EEeecCCceeeEEEecCCCCeEEE-------eecCCcEEEecCCcccccc----------cccccccEEEEEEecCCcEE
Q 012712          379 RVIEADRHVVNCIEPHPHSTVLAS-------SGIESDIKILTPNAADRAT----------LPTNIEQVCFSIYSADYWWS  441 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s~~~~~l~s-------~~~d~~i~iw~~~~~~~~~----------~~~~~~~v~~~~~s~d~~~l  441 (458)
                      .++.+|...+..++|+||+++|++       ++.|++|+|||+.+++...          +..+..++.+++|||||+++
T Consensus       297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred             EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence            899999999999999999999994       5668999999999876431          23556679999999999866


Q ss_pred             E-e----eecCCceEEEEE
Q 012712          442 K-S----QNFSCSILLFEW  455 (458)
Q Consensus       442 ~-s----~~~d~~i~~w~~  455 (458)
                      + +    ++.++.|+|||.
T Consensus       377 ~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         377 WFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             EEEECCCTTSCCEEEEEET
T ss_pred             EEEEecCCCCCCeEEEEEC
Confidence            3 3    246788999983

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=7.9e-30  Score=227.66  Aligned_cols=339  Identities=9%  Similarity=-0.059  Sum_probs=238.3

Q ss_pred             CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecC
Q 012712            3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSD   81 (458)
Q Consensus         3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~   81 (458)
                      .+.|||||++|++++.|+.|++||+.+++....                ..+....+|.+.+.+..|+|||++| ++++.
T Consensus        66 ~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~----------------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~  129 (432)
T d1qksa2          66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV----------------AEIKIGSEARSIETSKMEGWEDKYAIAGAYW  129 (432)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCCEE----------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE----------------EEEecCCCCCCeEEecccCCCCCEEEEEcCC
Confidence            467999999999999999999999998764311                1223345677788888899999986 67888


Q ss_pred             CCeEEEEECCCcceeeeecc----------CCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeeccccc
Q 012712           82 DRRVILWDWKTERVKLSFHS----------GHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQ  150 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  150 (458)
                      ++.|++||..+++.+..+..          .+......+.++|  ++..+ ++...++.|.+|+..+.+......+ .+.
T Consensus       130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i-~~g  206 (432)
T d1qksa2         130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH--YRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAE  206 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS--SSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECC
T ss_pred             CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC--CCCEEEEEEccCCeEEEEEccCCCcceEEEE-ccc
Confidence            99999999999988766521          2345567889999  88765 5666789999999987765443323 245


Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe-cCCCeEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDEYTR  229 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~  229 (458)
                      ..+..++|+|++..+++++..++.+.++|.++++....+.......     +........+.+. +...++. ..++.+.
T Consensus       207 ~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~-g~~~~~~~lg~~~v~  280 (432)
T d1qksa2         207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP-----HPGRGANFVHPTF-GPVWATSHMGDDSVA  280 (432)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB-----CCTTCEEEEETTT-EEEEEEEBSSSSEEE
T ss_pred             CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcccc-----ccCcccceecCCC-CceecccccCCceEE
Confidence            6788999999996666666677889999999887766654332211     2222334444443 3344433 3478899


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      +|+.....                   ...+...+....++|++..+++++ ++..++|...+.                
T Consensus       281 ~~~~~~~~-------------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~----------------  325 (432)
T d1qksa2         281 LIGTDPEG-------------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL----------------  325 (432)
T ss_dssp             EEECCTTT-------------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT----------------
T ss_pred             eccccccc-------------------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccC----------------
Confidence            99876542                   112455788899999988777776 668999986542                


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCcee
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV  388 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  388 (458)
                                                  ..|...  ..+++  .||++.+++++.|+.+++|++.++..+   ..|...+
T Consensus       326 ----------------------------~~~~~~--~~sv~--vpDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v  370 (432)
T d1qksa2         326 ----------------------------NPEAEI--SGSVA--VFDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRV  370 (432)
T ss_dssp             ----------------------------CSSHHH--HTCEE--EEEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEE
T ss_pred             ----------------------------CCCCCe--eeEEE--EEechhhcccccCCceEeccccccccc---CCCCCcE
Confidence                                        112211  22333  379999999999999999998665332   3566789


Q ss_pred             eEEEecCCCCeEEEee-----cCCcEEEecCCcccccccccccccEEEEEEecCCcEE
Q 012712          389 NCIEPHPHSTVLASSG-----IESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWS  441 (458)
Q Consensus       389 ~~~~~s~~~~~l~s~~-----~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  441 (458)
                      .+++|||||++++.+.     .+|.|+|||..+.++........     .++|+|++-
T Consensus       371 ~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~-----~~tp~G~~~  423 (432)
T d1qksa2         371 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER-----LVTPTGKFN  423 (432)
T ss_dssp             EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEEEEE
T ss_pred             EEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCC-----ccCCCeeEE
Confidence            9999999999885543     46899999999998764433321     236777653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=1.5e-26  Score=197.38  Aligned_cols=268  Identities=12%  Similarity=0.137  Sum_probs=204.9

Q ss_pred             EEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeeccccccceE
Q 012712           76 LISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQGRAH  154 (458)
Q Consensus        76 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~  154 (458)
                      .++++.|++|.+||+++++.+.++.  ....+..++|+|  ||++| ++++.++.|++||+.+++.+..  +..+. .+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~--~g~~p~~va~sp--dG~~l~v~~~~~~~i~v~d~~t~~~~~~--~~~~~-~~~   77 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIAT--VPAGS-SPQ   77 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEE--EECSS-SEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEE--CCCCceEEEEeC--CCCEEEEEECCCCEEEEEECCCCceeee--eeccc-ccc
Confidence            3567789999999999999888873  335678999999  99987 4667789999999998877655  44443 468


Q ss_pred             EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712          155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR  234 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  234 (458)
                      .++|++++..+++++..++.+.+|+..+++....+.           ....+.++.|+|++..+++++..++.+.+|+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~  146 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccccccccccccccccccceeeecccccceeeeecc-----------ccccceEEEeecCCCeeeeeeccccceeeeecc
Confidence            899999997777888889999999999988776665           233578899999966666777888999999998


Q ss_pred             CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--cEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712          235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM  312 (458)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (458)
                      +.+....                ......+..++++|++..++++..+  .+.+|+....                    
T Consensus       147 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  190 (301)
T d1l0qa2         147 TKAVINT----------------VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN--------------------  190 (301)
T ss_dssp             TTEEEEE----------------EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------------
T ss_pred             ccceeee----------------cccCCCceEEEeeccccceeeecccccccccccccce--------------------
Confidence            8763221                1123457889999999887777633  4667776542                    


Q ss_pred             CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec---CCCeEEEEEecCCeEEEEeecCCceee
Q 012712          313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRIFIWKKKGGELIRVIEADRHVVN  389 (458)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~  389 (458)
                                        ........+..   ...+++ +++++.++.+.   .++.|++||+.+++.+..+..+ ..+.
T Consensus       191 ------------------~~~~~~~~~~~---~~~~~~-~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~  247 (301)
T d1l0qa2         191 ------------------SVIDTVKVEAA---PSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPA  247 (301)
T ss_dssp             ------------------EEEEEEECSSE---EEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEE
T ss_pred             ------------------eeeecccccCC---cceeec-cccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEE
Confidence                              22233333322   567777 99999887553   3478999999999999888754 4578


Q ss_pred             EEEecCCCCeE-EEeecCCcEEEecCCccccc
Q 012712          390 CIEPHPHSTVL-ASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       390 ~~~~s~~~~~l-~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +++|+|||++| ++++.|+.|++||+++++..
T Consensus       248 ~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            99999999976 57778999999999988765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=3.9e-26  Score=194.81  Aligned_cols=273  Identities=12%  Similarity=0.128  Sum_probs=203.2

Q ss_pred             EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEECC
Q 012712           13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWK   91 (458)
Q Consensus        13 l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~   91 (458)
                      .++++.|++|.|||+++++.+++                     +.. .+.+..++|+|||++| ++++.++.|++||+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~---------------------i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTAT---------------------IPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE---------------------EEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEECCCCEEEEEECCCCeEEEE---------------------EEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            35677899999999999987743                     442 3457899999999987 567788999999999


Q ss_pred             CcceeeeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712           92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG  170 (458)
Q Consensus        92 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  170 (458)
                      +++.+..+ ..+. .+..++|++  ++..++ ++..++.+.+|+..+++....  +. +.....++.++|++..+++++.
T Consensus        63 t~~~~~~~-~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          63 TNNVIATV-PAGS-SPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGT--VK-TGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             TTEEEEEE-ECSS-SEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEE--EE-CSSSEEEEEECTTSSEEEEEET
T ss_pred             CCceeeee-eccc-ccccccccc--ccccccccccccceeeecccccceeeee--cc-ccccceEEEeecCCCeeeeeec
Confidence            99988877 3443 568999999  887655 556678999999988766554  33 3456788999999977778888


Q ss_pred             CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC
Q 012712          171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY  250 (458)
Q Consensus       171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  250 (458)
                      .++.+.+|+..+......+.           ....+..++++|++..++++...++.+.+|+....+....         
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  195 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVS-----------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT---------  195 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEE-----------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE---------
T ss_pred             cccceeeeeccccceeeecc-----------cCCCceEEEeeccccceeeecccccccccccccceeeeec---------
Confidence            89999999999988776665           2235788999998544444444557777888776543211         


Q ss_pred             cCCCccccccccceeEEEeCCCCcEEEEec-C---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 012712          251 FCPPNLIGDEQVGITGLAFSDQSELLVSYN-D---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN  326 (458)
Q Consensus       251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (458)
                             ......+..+++++++..++.+. +   +.|++||..++                                  
T Consensus       196 -------~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~----------------------------------  234 (301)
T d1l0qa2         196 -------VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN----------------------------------  234 (301)
T ss_dssp             -------EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT----------------------------------
T ss_pred             -------ccccCCcceeeccccccccccccccceeeeeeeeecCCC----------------------------------
Confidence                   11234567899999998776543 2   36999998773                                  


Q ss_pred             cccccCceeecCccceeeeeEEEEecCCCcEE-EEecCCCeEEEEEecCCeEEEEeec
Q 012712          327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV-VSGSDCGRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  383 (458)
                          +....+..+..   +.+++| +|||++| ++++.+++|++||+++++++.++..
T Consensus       235 ----~~~~~~~~~~~---~~~va~-spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         235 ----KITARIPVGPD---PAGIAV-TPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             ----EEEEEEECCSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ----eEEEEEcCCCC---EEEEEE-eCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence                33344443333   678998 9999987 5777899999999999999988864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.96  E-value=1.5e-27  Score=207.91  Aligned_cols=305  Identities=10%  Similarity=0.040  Sum_probs=212.9

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEE-EEecC
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDIL-ISGSD   81 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l-~s~~~   81 (458)
                      .++++++++|++++.|+.|.+||+++++++..                     ++ .|...+.+++|+|||+++ +++..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t---------------------~~~~~~~~p~~l~~spDG~~l~v~~~~   60 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKS---------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH   60 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEE---------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEE---------------------EEcCCCCCcceEEECCCCCEEEEEECC
Confidence            47899999999999999999999999887743                     44 456678899999999987 56668


Q ss_pred             CCeEEEEECCCcceeeeeccC-----CCcceeEEEEccCCCCeEEEEEc------------CCCcEEEeecccccceeee
Q 012712           82 DRRVILWDWKTERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTCA------------ADGQVRHAQILERGGVETK  144 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~s~~------------~dg~i~vw~~~~~~~~~~~  144 (458)
                      ++.|.+||+.+++.+..+...     +...+..++|+|  ||+++++++            .++.+.+|+..+++.....
T Consensus        61 ~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~--DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  138 (346)
T d1jmxb_          61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  138 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             CCcEEEEeCccCeeeeeecccccccccCCceEEEEEec--CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence            899999999999887665322     123466899999  999988765            3677889998877655432


Q ss_pred             eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      ........+..+.+++++ .+++++   +.+.+|++.+++....+...           .....+.++|++....+....
T Consensus       139 ~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  203 (346)
T d1jmxb_         139 RTFPMPRQVYLMRAADDG-SLYVAG---PDIYKMDVKTGKYTVALPLR-----------NWNRKGYSAPDVLYFWPHQSP  203 (346)
T ss_dssp             EEEECCSSCCCEEECTTS-CEEEES---SSEEEECTTTCCEEEEECST-----------TCCCTTBCCCBCCCCCCCCCT
T ss_pred             EeeeccCceEEEEecCCC-EEEEeC---CcceEEEccCCCEEEEEecC-----------CCccceEEeccccEEEEEecC
Confidence            222223455667777777 554442   45899999988876665422           134556677874444444555


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCc
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPV  303 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~  303 (458)
                      ++.+.+++....                                +.+....+++.. ...+.+|+..++.          
T Consensus       204 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------  241 (346)
T d1jmxb_         204 RHEFSMLYTIAR--------------------------------FKDDKQDPATADLLYGYLSVDLKTGK----------  241 (346)
T ss_dssp             TCEEEEEEEEEE--------------------------------C-------CCCEEEEEEEEEETTTCC----------
T ss_pred             CCceEeeeeeee--------------------------------eccCceeEeeccCCceEEEEECCCCc----------
Confidence            556665554321                                112222333333 3368888877631          


Q ss_pred             cccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712          304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA  383 (458)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  383 (458)
                                                 .....+..+..  .+..+.+ ++++.+++... ++.|++||..+++.+..+. 
T Consensus       242 ---------------------------~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-  289 (346)
T d1jmxb_         242 ---------------------------THTQEFADLTE--LYFTGLR-SPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-  289 (346)
T ss_dssp             ---------------------------EEEEEEEECSS--CEEEEEE-CSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-
T ss_pred             ---------------------------eEEEEeecccc--eeEEEEE-eCCCCEEEEec-CCeEEEEECCCCcEEEEEc-
Confidence                                       11222333333  2667777 88888887765 4689999999999998876 


Q ss_pred             CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +...+.+++|+|||++|++++.|+.|++||+.+++..
T Consensus       290 ~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            4456999999999999999999999999999988765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=7.7e-27  Score=202.59  Aligned_cols=292  Identities=9%  Similarity=0.025  Sum_probs=197.9

Q ss_pred             CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee--cCCCceEEEEEecCCCEE-EEecCCCeEEE
Q 012712           11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD--KHRGCVNTVSFNTDGDIL-ISGSDDRRVIL   87 (458)
Q Consensus        11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l-~s~~~d~~i~i   87 (458)
                      .++++++.|+.|+|||+++++++..                     +.  .+...+.+++|+|||++| ++++.++.|.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~---------------------i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v   60 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKV---------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK   60 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEE---------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEE---------------------EECCCCCCCccEEEECCCCCEEEEEECCCCeEEE
Confidence            5799999999999999998887643                     43  345668899999999987 56778999999


Q ss_pred             EECCCcceeeeeccCC-----CcceeEEEEccCCCCeEEEEEcC------------CCcEEEeecccccceeeeeccccc
Q 012712           88 WDWKTERVKLSFHSGH-----NDNVFQAKIMPFTDDRSIVTCAA------------DGQVRHAQILERGGVETKLLGKHQ  150 (458)
Q Consensus        88 wd~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~s~~~------------dg~i~vw~~~~~~~~~~~~~~~~~  150 (458)
                      ||+.+++.+..+. .+     ...+..++|+|  +++.++++..            +..+.+||..+++....  +. +.
T Consensus        61 ~D~~t~~~~~~~~-~~~~~~~~~~~~~v~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~-~~  134 (337)
T d1pbyb_          61 IDLVTGETLGRID-LSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--FE-AP  134 (337)
T ss_dssp             EETTTCCEEEEEE-CCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--EE-CC
T ss_pred             EECCCCcEEEEEe-cCCCcccccceeeEEEcC--CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe--cc-cc
Confidence            9999999877662 22     23456899999  9999987763            56788899887766544  33 34


Q ss_pred             cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712          151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL  230 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  230 (458)
                      ..+..++|+|++ .++++++.  .+.+||..+++....+.....           .....+.|++......+...+....
T Consensus       135 ~~~~~~~~s~dg-~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  200 (337)
T d1pbyb_         135 RQITMLAWARDG-SKLYGLGR--DLHVMDPEAGTLVEDKPIQSW-----------EAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             SSCCCEEECTTS-SCEEEESS--SEEEEETTTTEEEEEECSTTT-----------TTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             CCceEEEEcCCC-CEEEEEcC--CcceeeeecCcEEEEeecCCc-----------cccceecCCcceeeccccccceeee
Confidence            567889999999 45666654  477899998876655543211           1122333432111122222222222


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      ++...                                  ..+........ ...+.+|+..++.                
T Consensus       201 ~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------  230 (337)
T d1pbyb_         201 PFYTA----------------------------------RKDIDPADPTAYRTGLLTMDLETGE----------------  230 (337)
T ss_dssp             EEEEE----------------------------------BTTSCTTSGGGEEEEEEEEETTTCC----------------
T ss_pred             eeeee----------------------------------eeccceeeecccCccEEEEEcCCCc----------------
Confidence            22211                                  11111111111 3346777766531                


Q ss_pred             cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN  389 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  389 (458)
                                           .....+..+..  ....+.+ +|++.+++.+  ++.|++||+.+++.+..+. +...+.
T Consensus       231 ---------------------~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~  283 (337)
T d1pbyb_         231 ---------------------MAMREVRIMDV--FYFSTAV-NPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYY  283 (337)
T ss_dssp             ---------------------EEEEEEEECSS--CEEEEEE-CTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred             ---------------------EEEEEecCCCc--ceEEEEe-cccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEE
Confidence                                 11112222332  2556666 9999998766  5899999999999998886 556789


Q ss_pred             EEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          390 CIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       390 ~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +++|+|||++|++++.|+.|++||.++.+..
T Consensus       284 ~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            9999999999999999999999999988765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=4.3e-26  Score=198.62  Aligned_cols=299  Identities=9%  Similarity=-0.029  Sum_probs=210.4

Q ss_pred             EEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeee
Q 012712           67 VSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKL  145 (458)
Q Consensus        67 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~  145 (458)
                      ++|++++++|++++.+++|.+||+++++.+..+...|...+.+++|+|  ||+++ +++..++.|.+||+.+++......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp--DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC--CCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            468999999999999999999999999988877546677789999999  99887 556678999999999887765432


Q ss_pred             cc----ccccceEEEEEcCCCCeEEEEec------------CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712          146 LG----KHQGRAHKLAIEPGSPHVFYTCG------------EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI  209 (458)
Q Consensus       146 ~~----~~~~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  209 (458)
                      ..    .+...+..++|+|+|. .+++++            .++.+.+||..+++....+....        ....+..+
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~  150 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--------MPRQVYLM  150 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--------CCSSCCCE
T ss_pred             ccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee--------ccCceEEE
Confidence            22    1233567899999995 455443            46788999988877655443321        12234556


Q ss_pred             EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--CcEEEE
Q 012712          210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--EFIYLF  287 (458)
Q Consensus       210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~i~i~  287 (458)
                      .++++ +.+++. +  +.+.+|++.+.+......                .......+.++|++..+.....  +.+.++
T Consensus       151 ~~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (346)
T d1jmxb_         151 RAADD-GSLYVA-G--PDIYKMDVKTGKYTVALP----------------LRNWNRKGYSAPDVLYFWPHQSPRHEFSML  210 (346)
T ss_dssp             EECTT-SCEEEE-S--SSEEEECTTTCCEEEEEC----------------STTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             EecCC-CEEEEe-C--CcceEEEccCCCEEEEEe----------------cCCCccceEEeccccEEEEEecCCCceEee
Confidence            67775 455543 2  458899988765322111                1223455567777765543332  223333


Q ss_pred             EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712          288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI  367 (458)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i  367 (458)
                      +..                                                         .. +.+....++++..++.+
T Consensus       211 ~~~---------------------------------------------------------~~-~~~~~~~~~~~~~~~~~  232 (346)
T d1jmxb_         211 YTI---------------------------------------------------------AR-FKDDKQDPATADLLYGY  232 (346)
T ss_dssp             EEE---------------------------------------------------------EE-C-------CCCEEEEEE
T ss_pred             eee---------------------------------------------------------ee-eccCceeEeeccCCceE
Confidence            211                                                         11 14445566677778889


Q ss_pred             EEEEecCCeEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeec
Q 012712          368 FIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNF  446 (458)
Q Consensus       368 ~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  446 (458)
                      .+|++.++..... +..|...+..+.+++++.+++... ++.|++||..+++......+...+.+++|||||++|++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred             EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeC
Confidence            9999998876544 456788899999999999888776 46899999999987766666667999999999999999999


Q ss_pred             CCceEEEEE
Q 012712          447 SCSILLFEW  455 (458)
Q Consensus       447 d~~i~~w~~  455 (458)
                      |+.|++||.
T Consensus       312 d~~v~v~D~  320 (346)
T d1jmxb_         312 FNDLAVFNP  320 (346)
T ss_dssp             SSEEEEEET
T ss_pred             CCcEEEEEC
Confidence            999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.9e-25  Score=193.75  Aligned_cols=294  Identities=11%  Similarity=0.025  Sum_probs=203.7

Q ss_pred             eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC
Q 012712          119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR  198 (458)
Q Consensus       119 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  198 (458)
                      +++++++.|++|++||+.+++.+.......+...+.+++|+|||+.++++++.++.|.+||+++++....+.......  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence            589999999999999999988777655555666788999999996566788889999999999998877665432111  


Q ss_pred             cceeecceEEEEECCCCCcEEEEec------------CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712          199 NYMTVVNLNAIAIDPRNANLFAVAG------------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG  266 (458)
Q Consensus       199 ~~~~~~~v~~~~~~p~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (458)
                         ....+..++|+|+ +++++++.            .+..+.+||..+.+....               . .....+..
T Consensus        80 ---~~~~~~~v~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---------------~-~~~~~~~~  139 (337)
T d1pbyb_          80 ---RVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA---------------F-EAPRQITM  139 (337)
T ss_dssp             ---EEECTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE---------------E-ECCSSCCC
T ss_pred             ---cccceeeEEEcCC-CcEEEEeecCCcceeeeccccccceeeccccCCeEEEe---------------c-cccCCceE
Confidence               2334568999998 56776665            356788888887653221               1 12345778


Q ss_pred             EEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeee
Q 012712          267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK  346 (458)
Q Consensus       267 ~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  346 (458)
                      ++|+|+|+++++++. .+.+||..++.....++.....   ....+.+++..              ......+.......
T Consensus       140 ~~~s~dg~~l~~~~~-~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------------~~~~~~~~~~~~~~  201 (337)
T d1pbyb_         140 LAWARDGSKLYGLGR-DLHVMDPEAGTLVEDKPIQSWE---AETYAQPDVLA--------------VWNQHESSGVMATP  201 (337)
T ss_dssp             EEECTTSSCEEEESS-SEEEEETTTTEEEEEECSTTTT---TTTBCCCBCCC--------------CCCCCTTTTEEEEE
T ss_pred             EEEcCCCCEEEEEcC-CcceeeeecCcEEEEeecCCcc---ccceecCCcce--------------eeccccccceeeee
Confidence            999999999988764 4778888765432222111000   00001111100              00000111111122


Q ss_pred             EEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc
Q 012712          347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN  425 (458)
Q Consensus       347 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~  425 (458)
                      .... ..+......+..++.+.+|+..+++.... +..+...+..++++|++.+++.+  ++.|++||+.+++......+
T Consensus       202 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~  278 (337)
T d1pbyb_         202 FYTA-RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL  278 (337)
T ss_dssp             EEEE-BTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred             eeee-eeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC
Confidence            2222 34444555666778899999998876543 45677788899999999988765  58999999999988876677


Q ss_pred             cccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712          426 IEQVCFSIYSADYWWSKSQNFSCSILLFEW  455 (458)
Q Consensus       426 ~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~  455 (458)
                      ...+.+++|+|||++|++++.|+.|++||.
T Consensus       279 ~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            778999999999999999999999999985

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.94  E-value=4.2e-23  Score=181.51  Aligned_cols=322  Identities=12%  Similarity=-0.014  Sum_probs=213.4

Q ss_pred             CCCCCCCCCCeEEEe-----eCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE
Q 012712            2 DDASNNNNNKRARTS-----VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL   76 (458)
Q Consensus         2 ~~~~~~~~~~~l~~~-----~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   76 (458)
                      .+++++|++++++..     +..+.|.+||.++|+.+.+                     +..+..+  .++|+|||++|
T Consensus        24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~---------------------~~~~~~~--~~a~SpDG~~l   80 (373)
T d2madh_          24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH---------------------VNGGFLP--NPVAAHSGSEF   80 (373)
T ss_pred             cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE---------------------EeCCCCc--cEEEcCCCCEE
Confidence            467789999998764     2346799999999987743                     5555443  79999999999


Q ss_pred             EEec----------CCCeEEEEECCCcceeeeeccCCCcce-------eEEEEccCCCCeEEEEEc--CCCcEEEeeccc
Q 012712           77 ISGS----------DDRRVILWDWKTERVKLSFHSGHNDNV-------FQAKIMPFTDDRSIVTCA--ADGQVRHAQILE  137 (458)
Q Consensus        77 ~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~  137 (458)
                      ++++          .++.|.+||..+++.+..+ ..+....       ..+.|+|  +++.++...  .++.+.+|+...
T Consensus        81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~~~~~~~~~~  157 (373)
T d2madh_          81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVVQGG  157 (373)
T ss_pred             EEEeecCCcccccccceEEEEEECCCCcEEEEE-ecCCcceeEeccCCCcEEEEe--CCCcEEEEEEcCCCceEEeeccC
Confidence            8874          3578999999999987776 3333322       4578888  887766544  456788888766


Q ss_pred             ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712          138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN  217 (458)
Q Consensus       138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  217 (458)
                      .+...      +.....++.++|++...+++.+.|+.+.+|+...++.............    .......+.++++  .
T Consensus       158 ~~~~~------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~  225 (373)
T d2madh_         158 SSDDQ------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA----QNLLTQPAQANKS--G  225 (373)
T ss_pred             CeEEE------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC----ccceeeeEEECCC--c
Confidence            54332      3344678899999987888999999999999988876655432211100    1112344556664  3


Q ss_pred             EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCC
Q 012712          218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP  297 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~  297 (458)
                      .++..+.++.+.+|+.........             ..............+.|.+...+..+.+               
T Consensus       226 ~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------------  277 (373)
T d2madh_         226 RIVWPVYSGKILQADISAAGATNK-------------APIDALSGGRKADTWRPGGWQQVAYLKS---------------  277 (373)
T ss_pred             eEEEecCCceEEEEEcCCCeEEEE-------------EeeccccCcEEeeeeccCcceeeEEecC---------------
Confidence            556667888999999877542110             0001111122223333322221111100               


Q ss_pred             CCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE
Q 012712          298 PPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL  377 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  377 (458)
                                                                  .  -....+ .+++..++....++.+.+||..+++.
T Consensus       278 --------------------------------------------~--~~~~~~-~~~~~~~~~~~~~~~v~~~d~~t~~~  310 (373)
T d2madh_         278 --------------------------------------------S--DGIYLL-TSEQSAWKLHAAAKEVTSVTGLVGQT  310 (373)
T ss_pred             --------------------------------------------C--CeEEEe-cCCCceEEeecCCCeEEEEECCCCcE
Confidence                                                        0  001112 45566677778889999999999999


Q ss_pred             EEEeecCCceeeEEEecCCCCe--EEEeecCCcEEEecCCcccccc-cccccccEEEEEEecC
Q 012712          378 IRVIEADRHVVNCIEPHPHSTV--LASSGIESDIKILTPNAADRAT-LPTNIEQVCFSIYSAD  437 (458)
Q Consensus       378 ~~~~~~~~~~v~~~~~s~~~~~--l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~v~~~~~s~d  437 (458)
                      +..+. +...+..++|+|||+.  +++++.|+.|++||+.+++... +..+....+.++..++
T Consensus       311 ~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         311 SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            98876 5567899999999984  5688999999999999998764 4446566666666543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.2e-23  Score=176.98  Aligned_cols=296  Identities=10%  Similarity=0.107  Sum_probs=191.1

Q ss_pred             EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE-ecCCCeEEEEECC
Q 012712           13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-GSDDRRVILWDWK   91 (458)
Q Consensus        13 l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~i~iwd~~   91 (458)
                      ++++++|++|++|++++...+                  ++++.+ .|.+.|..|+|+|||++|++ +..|+.|++|++.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l------------------~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~   67 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGAL------------------TLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA   67 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCE------------------EEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEcCCCCe------------------EEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence            577789999999999754332                  222333 47899999999999998854 5568999999997


Q ss_pred             Ccceeeee--ccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEE
Q 012712           92 TERVKLSF--HSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT  168 (458)
Q Consensus        92 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  168 (458)
                      ........  ...+...+..++|+|  ||++|++++. ++.+.+|+..............+...+.++.++|++..++..
T Consensus        68 ~~~~~~~~~~~~~~~~~p~~l~~sp--Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~  145 (333)
T d1ri6a_          68 PDDGALTFAAESALPGSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP  145 (333)
T ss_dssp             TTTCCEEEEEEEECSSCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE
T ss_pred             CCCCcEEEeeecccCCCceEEEEcC--CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecc
Confidence            66433322  123455678899999  9999998875 678999988776655444455677788899999999655555


Q ss_pred             ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712          169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA  248 (458)
Q Consensus       169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  248 (458)
                      ...+..|.+|+..................    ....+..++|++++...+.+....+...+++............  . 
T Consensus       146 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~-  218 (333)
T d1ri6a_         146 ALKQDRICLFTVSDDGHLVAQDPAEVTTV----EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ--T-  218 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEEEECS----TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE--E-
T ss_pred             ccccceeeEEEeccCCcceeeeceeeeee----cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeee--e-
Confidence            56677899999877654433222111111    1224578999998554555566777788888654332110000  0 


Q ss_pred             CCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 012712          249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN  326 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (458)
                        ................++++++++++....  .+.+.+|++.....                                
T Consensus       219 --~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  264 (333)
T d1ri6a_         219 --LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS--------------------------------  264 (333)
T ss_dssp             --EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--------------------------------
T ss_pred             --eeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC--------------------------------
Confidence              000000111234567789999998776655  45799998865321                                


Q ss_pred             cccccCceeecCcc-ceeeeeEEEEecCCCcEEEEec-CCCeEEEEEe--cCCeE
Q 012712          327 TDVRIAPQVYKGHR-NCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKK--KGGEL  377 (458)
Q Consensus       327 ~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~  377 (458)
                            ......+. ....+..++| +|||++|++++ .++.|++|++  ++|++
T Consensus       265 ------~~~~~~~~~~~~~p~~~a~-spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         265 ------VLSKEGFQPTETQPRGFNV-DHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ------CEEEEEEEECSSSCCCEEE-CTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ------EEEEEEEeCCCCCeeEEEE-eCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence                  11111111 1112567888 99999887665 5689999955  56654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.92  E-value=4.3e-22  Score=174.98  Aligned_cols=307  Identities=8%  Similarity=-0.065  Sum_probs=205.6

Q ss_pred             ecCCCceEEEEEecCCCEEEEe-----cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc-------
Q 012712           58 DKHRGCVNTVSFNTDGDILISG-----SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-------  125 (458)
Q Consensus        58 ~~h~~~v~~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-------  125 (458)
                      ..+.+++.+++++|||+.++..     +.++.|.+||..+++.+.++ ..+..  ..++|+|  ||++|++++       
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~--~~~a~Sp--DG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFL--PNPVAAH--SGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCC--ccEEEcC--CCCEEEEEeecCCccc
Confidence            4688999999999999988764     23467999999999988876 34433  3799999  999999875       


Q ss_pred             ---CCCcEEEeecccccceeeeeccccccc-------eEEEEEcCCCCeEEEEe-cCCCeEEEEeCCCCCccceeeeccc
Q 012712          126 ---ADGQVRHAQILERGGVETKLLGKHQGR-------AHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPI  194 (458)
Q Consensus       126 ---~dg~i~vw~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~  194 (458)
                         .++.|.+||..+++....  +..+...       ...+.|++++..+++.. ..++.+.+|+....+......    
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----  165 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIAD--IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----  165 (373)
T ss_pred             ccccceEEEEEECCCCcEEEE--EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----
Confidence               357899999998887654  3323222       24577888885433322 345678888877765443322    


Q ss_pred             CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712          195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE  274 (458)
Q Consensus       195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  274 (458)
                                ...++.++|++...+++.+.|+.+.+|+....+.......         .............+.+.+++.
T Consensus       166 ----------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  226 (373)
T d2madh_         166 ----------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG---------AMLTAAQNLLTQPAQANKSGR  226 (373)
T ss_pred             ----------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee---------eccccCccceeeeEEECCCce
Confidence                      3568889998767778899999999999987764322110         001112223345667778887


Q ss_pred             EEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712          275 LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK  354 (458)
Q Consensus       275 ~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~  354 (458)
                      +++...++.+.+|+.......                                    .......+..  ......+ .|.
T Consensus       227 ~~~~~~~~~v~~~~~~~~~~~------------------------------------~~~~~~~~~~--~~~~~~~-~~~  267 (373)
T d2madh_         227 IVWPVYSGKILQADISAAGAT------------------------------------NKAPIDALSG--GRKADTW-RPG  267 (373)
T ss_pred             EEEecCCceEEEEEcCCCeEE------------------------------------EEEeeccccC--cEEeeee-ccC
Confidence            777777778999987763210                                    0111111111  1222222 344


Q ss_pred             CcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEE
Q 012712          355 CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIY  434 (458)
Q Consensus       355 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~  434 (458)
                      +...+..+.|+...                      ..+.+++..+++...++.+.+||..+++......+...+..++|
T Consensus       268 ~~~~~~~~~d~~~~----------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~  325 (373)
T d2madh_         268 GWQQVAYLKSSDGI----------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISV  325 (373)
T ss_pred             cceeeEEecCCCeE----------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEE
Confidence            33333333333211                      12344566777788889999999999988877777788999999


Q ss_pred             ecCCc--EEEeeecCCceEEEEE
Q 012712          435 SADYW--WSKSQNFSCSILLFEW  455 (458)
Q Consensus       435 s~d~~--~l~s~~~d~~i~~w~~  455 (458)
                      ||||+  ++++++.|+.|++||.
T Consensus       326 spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         326 AQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEC
Confidence            99997  4478999999999995

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=6.2e-22  Score=172.70  Aligned_cols=308  Identities=10%  Similarity=0.048  Sum_probs=196.2

Q ss_pred             CCCCCCCCeEEEee-----CCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE
Q 012712            4 ASNNNNNKRARTSV-----DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS   78 (458)
Q Consensus         4 ~~~~~~~~~l~~~~-----~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   78 (458)
                      .+-+|++++++...     .+..|.+||..+|+++.+                     +..+..+  .++|||||++|++
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~---------------------~~~g~~~--~~a~SpDg~~l~v   63 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM---------------------IDGGFLP--NPVVADDGSFIAH   63 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE---------------------EEECSSC--EEEECTTSSCEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE---------------------EECCCCC--ceEEcCCCCEEEE
Confidence            45689999987753     456799999999987743                     4444433  7999999998876


Q ss_pred             ec----------CCCeEEEEECCCcceeeeecc--C----CCcceeEEEEccCCCCeEEEEEc--CCCcEEEeecccccc
Q 012712           79 GS----------DDRRVILWDWKTERVKLSFHS--G----HNDNVFQAKIMPFTDDRSIVTCA--ADGQVRHAQILERGG  140 (458)
Q Consensus        79 ~~----------~d~~i~iwd~~~~~~~~~~~~--~----~~~~i~~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~~  140 (458)
                      ++          .|+.|++||..+++.+..+..  .    .......++|+|  +++.++.++  .+..+.+|+..+++.
T Consensus        64 ~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          64 ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec--CCCeeEEecCCCCceeeeeecCCCcE
Confidence            43          478999999999987766521  1    122345689999  999887764  467899999988776


Q ss_pred             eeeeecccc-----ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712          141 VETKLLGKH-----QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN  215 (458)
Q Consensus       141 ~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  215 (458)
                      .........     ......+.+++++..+++....++.+.+++.........               ..+....+.++ 
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~-  205 (355)
T d2bbkh_         142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE---------------FLINHPAYSQK-  205 (355)
T ss_dssp             EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS---------------CBCSCCEEETT-
T ss_pred             eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceec---------------ceeeeccccCC-
Confidence            554222111     122334556666644444444555555555444332211               12344556665 


Q ss_pred             CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C----------CcE
Q 012712          216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D----------EFI  284 (458)
Q Consensus       216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~----------~~i  284 (458)
                      +..++.++.++.+++|++..++............   ..............+++++++..++... +          +.+
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v  282 (355)
T d2bbkh_         206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE---AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  282 (355)
T ss_dssp             TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH---HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeccCCccc---ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeE
Confidence            5678888999999999998765321100000000   0000001112345688999998776543 1          258


Q ss_pred             EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc--EEEEec
Q 012712          285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVVSGS  362 (458)
Q Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~l~~~~  362 (458)
                      .+||..++                                      +....+....   .+.+++| +|||+  ++++++
T Consensus       283 ~v~d~~t~--------------------------------------~~~~~~~~~~---~~~~~a~-spDG~~~l~v~~~  320 (355)
T d2bbkh_         283 VVLDAKTG--------------------------------------ERLAKFEMGH---EIDSINV-SQDEKPLLYALST  320 (355)
T ss_dssp             EEEETTTC--------------------------------------CEEEEEEEEE---EECEEEE-CCSSSCEEEEEET
T ss_pred             EEEeCCCC--------------------------------------cEEEEecCCC---CEEEEEE-cCCCCeEEEEEEC
Confidence            89998773                                      2333333222   3788998 99998  456778


Q ss_pred             CCCeEEEEEecCCeEEEEeecCCceeeEEEecCCC
Q 012712          363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS  397 (458)
Q Consensus       363 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (458)
                      .|+.|++||+++++.++++..+......+.+.++|
T Consensus       321 ~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         321 GDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             TTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            89999999999999999998776666666665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.4e-21  Score=168.70  Aligned_cols=290  Identities=12%  Similarity=0.129  Sum_probs=181.8

Q ss_pred             EEEEecCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeecccccceeee-ecccccc
Q 012712           75 ILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETK-LLGKHQG  151 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~-~~~~~~~  151 (458)
                      .+++++.|++|++|+++....+..+ ...|.+.+..++|+|  ||++|++++ .|+.|++|++......... ....+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp--DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC--CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            4577889999999998754332211 136788999999999  999986554 5899999999876543321 1222345


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      .+..++|+|+|+.++++...++.+.+|+..............        +...+.++.++|++...+.....+..+.+|
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--------GLDGCHSANISPDNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------CCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC--------CCccceEEEeeecceeeeccccccceeeEE
Confidence            677899999995544444467899999987765544433221        233567889999854444444566779999


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccc
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      +..........         ...............++|++++..+....  .+...+++..........           
T Consensus       156 ~~~~~~~~~~~---------~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------  215 (333)
T d1ri6a_         156 TVSDDGHLVAQ---------DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-----------  215 (333)
T ss_dssp             EECTTSCEEEE---------EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-----------
T ss_pred             EeccCCcceee---------eceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee-----------
Confidence            98765321100         00011112234567899999998877655  346778776542211100           


Q ss_pred             cccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEE-ecCCCeEEEEEecCCeEEEEe---ecC
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVI---EAD  384 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~---~~~  384 (458)
                                          ....... ...........+++ ++++++++. +..++.+.+|++........+   ...
T Consensus       216 --------------------~~~~~~~~~~~~~~~~~~~~~~-s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (333)
T d1ri6a_         216 --------------------VQTLDMMPENFSDTRWAADIHI-TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT  274 (333)
T ss_dssp             --------------------EEEEECSCTTCCSCCCEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred             --------------------eeeeeeeecCCCccccceeEEE-ecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC
Confidence                                0000000 01111112456677 999987765 456789999998765433333   223


Q ss_pred             CceeeEEEecCCCCeEEEee-cCCcEEEecCC
Q 012712          385 RHVVNCIEPHPHSTVLASSG-IESDIKILTPN  415 (458)
Q Consensus       385 ~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~  415 (458)
                      ...+..++|+|||++|++++ .++.|++|+++
T Consensus       275 ~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         275 ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             SSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            45678999999999877665 56899999653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.3e-21  Score=170.74  Aligned_cols=315  Identities=11%  Similarity=0.009  Sum_probs=195.3

Q ss_pred             eEEEEEecCCCEEEEe-----cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc----------CCC
Q 012712           64 VNTVSFNTDGDILISG-----SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA----------ADG  128 (458)
Q Consensus        64 v~~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~dg  128 (458)
                      +.-.+.+|||+.++..     ..+..|.+||..+++.+.++ ..+  ....++|+|  |+++|++++          .++
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g--~~~~~a~Sp--Dg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGG--FLPNPVVAD--DGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EEC--SSCEEEECT--TSSCEEEEEEEEEETTEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECC--CCCceEEcC--CCCEEEEEeCCCccccccCCCC
Confidence            3344568999988764     34568999999999988877 333  344799999  999887653          478


Q ss_pred             cEEEeecccccceeeeecc-----ccccceEEEEEcCCCCeEEEEe-cCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712          129 QVRHAQILERGGVETKLLG-----KHQGRAHKLAIEPGSPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT  202 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  202 (458)
                      .|++||..+++........     ........++|+|++..+++.. +.+..+.+|+..+++....+.......   ...
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  155 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---IFP  155 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEE
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce---Eee
Confidence            9999999988766542221     1122345689999995443332 456789999999988776654321100   001


Q ss_pred             ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-C
Q 012712          203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-D  281 (458)
Q Consensus       203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  281 (458)
                      ......+.+++++..+++....++.+.+++.......                    +...+....+.+++..++..+ +
T Consensus       156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~  215 (355)
T d2bbkh_         156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE--------------------DEFLINHPAYSQKAGRLVWPTYT  215 (355)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT--------------------TSCBCSCCEEETTTTEEEEEBTT
T ss_pred             cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce--------------------ecceeeeccccCCCCeEEEecCC
Confidence            1233456667764444444445555666655443211                    122344556677776666666 5


Q ss_pred             CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712          282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG  361 (458)
Q Consensus       282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~  361 (458)
                      +.+++|++..+.......                            ..............+.....+++ ++++..++..
T Consensus       216 ~~~~v~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~p~~~~~~~~-~~d~~~~~~~  266 (355)
T d2bbkh_         216 GKIHQIDLSSGDAKFLPA----------------------------VEALTEAERADGWRPGGWQQVAY-HRALDRIYLL  266 (355)
T ss_dssp             SEEEEEECTTSSCEECCC----------------------------EESSCHHHHHTTEEECSSSCEEE-ETTTTEEEEE
T ss_pred             CeEEEEecCCCcEEEEec----------------------------cCCcccceEeeeeeccceEEEEE-eCCCCeEEEE
Confidence            689999988753211100                            00000000000000001234566 8999888765


Q ss_pred             cCC----------CeEEEEEecCCeEEEEeecCCceeeEEEecCCCC--eEEEeecCCcEEEecCCcccccc-ccccccc
Q 012712          362 SDC----------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST--VLASSGIESDIKILTPNAADRAT-LPTNIEQ  428 (458)
Q Consensus       362 ~~d----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~  428 (458)
                      ..+          ..|.+||..+++.+.++.. ...+.+++|+|||+  ++++++.|+.|++||+++++.+. +..+...
T Consensus       267 ~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG  345 (355)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred             eccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence            433          4799999999999988864 45689999999998  45677789999999999998764 4334333


Q ss_pred             EEEEEEec
Q 012712          429 VCFSIYSA  436 (458)
Q Consensus       429 v~~~~~s~  436 (458)
                      ...+.+.+
T Consensus       346 p~~i~~~d  353 (355)
T d2bbkh_         346 PQVITTAD  353 (355)
T ss_dssp             CCEEECCC
T ss_pred             ccEEEeCC
Confidence            44444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.9e-18  Score=150.86  Aligned_cols=304  Identities=8%  Similarity=-0.097  Sum_probs=185.4

Q ss_pred             CCCceEEEEEecCCCEE--E-EecCCC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc---------
Q 012712           60 HRGCVNTVSFNTDGDIL--I-SGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA---------  125 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l--~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---------  125 (458)
                      +.++...++..++++..  + +...++  .|.+||..+++.+..+ ..+..  ..++|+|  |++.|++++         
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~-~~~~~--~~~a~sp--Dg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHS-LGAFL--SLAVAGH--SGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-EECTT--CEEEECT--TSSCEEEEEEEETTTTSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEE-eCCCC--CcceECC--CCCEEEEEcccCcccccc
Confidence            45555566677888753  2 233444  5777799999887776 34433  3689999  999998754         


Q ss_pred             -CCCcEEEeecccccceeeeecccc-----ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712          126 -ADGQVRHAQILERGGVETKLLGKH-----QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN  199 (458)
Q Consensus       126 -~dg~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  199 (458)
                       .|+.|++||..+++.........+     ......++|+|||+.++++...++.+.+||+.+++....+..+..     
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~-----  167 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC-----  167 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC-----
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc-----
Confidence             367899999998877655332211     122346899999966655556789999999999987766643211     


Q ss_pred             ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712          200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                               ..+.|.+...++..+.||.+.+++............         ......+...+....+.+++..+...
T Consensus       168 ---------~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         168 ---------FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG---------AQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             ---------CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC---------CCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             ---------ceEccCCCceEEEEcCCCCEEEEEecCCceeeeeee---------cccccccccceeecccccCcEEEEec
Confidence                     011222345666677778887777765542211100         11112233445567778887655543


Q ss_pred             cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712          280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV  359 (458)
Q Consensus       280 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~  359 (458)
                       .+.+++++.............                            ............+.....+++ ++++..++
T Consensus       230 -~~~v~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~a~-~~~~~~~~  279 (368)
T d1mdah_         230 -ASSILQGDIPAAGATMKAAID----------------------------GNESGRKADNFRSAGFQMVAK-LKNTDGIM  279 (368)
T ss_dssp             -SSCCEEEECCSSCCEEECCCC----------------------------SSCTHHHHTTEEECSSSCEEE-ETTTTEEE
T ss_pred             -CCCEEEEeecCCceEEEeecc----------------------------cccceeeeeeecCCCceeEEE-cCCCCEEE
Confidence             445666665543211100000                            000000000000001233555 88888776


Q ss_pred             EecCC---------CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCe--EEEeecCCcEEEecCCccccccc
Q 012712          360 SGSDC---------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV--LASSGIESDIKILTPNAADRATL  422 (458)
Q Consensus       360 ~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s~~~d~~i~iw~~~~~~~~~~  422 (458)
                      ....+         ..|.+||..+++.+.++.. ...+.+++|+|||+.  ++++..|+.|++||..+++.+..
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            54322         3699999999998888763 457899999999973  46677889999999999877643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.79  E-value=2e-17  Score=149.47  Aligned_cols=143  Identities=10%  Similarity=0.039  Sum_probs=103.9

Q ss_pred             CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC--
Q 012712            4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD--   81 (458)
Q Consensus         4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--   81 (458)
                      +.+.+++.++..  .|+.+.+||+.+|+...-                -.-..+..|...|.++.|||||++|+.++.  
T Consensus        22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~----------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          22 LRWISDHEYLYK--QENNILVFNAEYGNSSVF----------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CEECSSSEEEEE--SSSCEEEEETTTCCEEEE----------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CEeCCCCEEEEE--cCCcEEEEECCCCCEEEE----------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            345677777653  478899999999875411                111245677889999999999999998743  


Q ss_pred             -------CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc------
Q 012712           82 -------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------  148 (458)
Q Consensus        82 -------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~------  148 (458)
                             ++.+.+||+++++. ..+ ..+...+..+.|||  ||+.||... ++.+.+|+..++...... ..+      
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~-~~l-~~~~~~~~~~~~SP--DG~~ia~~~-~~~l~~~~~~~g~~~~~t-~~~~~~~~~  157 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQL-ITE-ERIPNNTQWVTWSP--VGHKLAYVW-NNDIYVKIEPNLPSYRIT-WTGKEDIIY  157 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEE-CCS-SCCCTTEEEEEECS--STTCEEEEE-TTEEEEESSTTSCCEECC-SCCBTTTEE
T ss_pred             ceeeeccCceEEEEECCCCcc-ccc-ccCCcccccccccc--CcceeeEee-cccceEEECCCCceeeee-eccCCCccc
Confidence                   56889999998875 334 67888999999999  999999965 578999999877654421 111      


Q ss_pred             -----------cccceEEEEEcCCCCeEEEEecC
Q 012712          149 -----------HQGRAHKLAIEPGSPHVFYTCGE  171 (458)
Q Consensus       149 -----------~~~~v~~~~~~~~~~~~l~s~~~  171 (458)
                                 ..+....+.|+|||. .|+....
T Consensus       158 ~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~~  190 (470)
T d2bgra1         158 NGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQF  190 (470)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEE
T ss_pred             ccccceeeeeeecCCccccEECCCCC-ccceeEe
Confidence                       122345688999995 5555543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.78  E-value=3.1e-19  Score=153.96  Aligned_cols=300  Identities=11%  Similarity=-0.001  Sum_probs=191.3

Q ss_pred             EEEecCCCeEEEEECCCcceeeeecc-----------------------------CCCcceeEEEEccCCCCeEEEEEc-
Q 012712           76 LISGSDDRRVILWDWKTERVKLSFHS-----------------------------GHNDNVFQAKIMPFTDDRSIVTCA-  125 (458)
Q Consensus        76 l~s~~~d~~i~iwd~~~~~~~~~~~~-----------------------------~~~~~i~~~~~~~~~~~~~l~s~~-  125 (458)
                      ++|++.+|.|++|++.+++.+.++.-                             .|........++|  ||++|+... 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp--DGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY--DGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE--EEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC--CCCEEEEEcC
Confidence            67888899999999988887666521                             1222344455678  999986654 


Q ss_pred             CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCe------------------EEEEeCCCCCccc
Q 012712          126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL------------------VQHFDLRTGAATE  187 (458)
Q Consensus       126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~------------------i~iwd~~~~~~~~  187 (458)
                      .+..|.++|+.+.+......+ .+...+..++|+|+++...+++..+..                  +..+|..+.+...
T Consensus        92 ~~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCEEEEEECCCCcEeeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            678999999998877654323 345678999999998544444433333                  3457777766655


Q ss_pred             eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeE
Q 012712          188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITG  266 (458)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  266 (458)
                      .+..           ...+..+.++|+ ++++++.+.+ ..+..++..+.+....              +.  .......
T Consensus       171 qI~v-----------~~~p~~v~~spd-Gk~a~vt~~nse~~~~id~~t~~~~d~--------------i~--v~n~p~~  222 (441)
T d1qnia2         171 QVIV-----------DGNLDNTDADYT-GKYATSTCYNSERAVDLAGTMRNDRDW--------------VV--VFNVERI  222 (441)
T ss_dssp             EEEE-----------SSCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCSSBCE--------------EE--EEEHHHH
T ss_pred             EEec-----------CCCccceEECCC-CCEEEEEecCCCceEEEeccCcceEEE--------------EE--eCCccce
Confidence            5542           224678999998 5666665544 3344444433321111              00  0111233


Q ss_pred             EEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeee
Q 012712          267 LAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVK  346 (458)
Q Consensus       267 ~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  346 (458)
                      +++.|+|+++..+.++.+.+++...                                      ......+.....   ..
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~--------------------------------------~~v~~~IPvgks---Ph  261 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGE--------------------------------------SEFTRYIPVPKN---PH  261 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSS--------------------------------------CSSEEEECCBSS---CC
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccC--------------------------------------CceEEEEeCCCC---cc
Confidence            4567899888776666666665543                                      223344444444   35


Q ss_pred             EEEEecCCCcEEE-EecCCCeEEEEEecCCeEE--------EEeecCC---ceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712          347 GVNFFGPKCEYVV-SGSDCGRIFIWKKKGGELI--------RVIEADR---HVVNCIEPHPHSTVLASSGIESDIKILTP  414 (458)
Q Consensus       347 ~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~--------~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~i~iw~~  414 (458)
                      .+.+ +|||++++ ++..+++|.+||+++.+..        ..+.++.   -.....+|.++|..+.+...|..|..|++
T Consensus       262 Gv~v-SPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         262 GLNT-SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             CEEE-CTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             CceE-CCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            6777 99999875 5778899999998653210        1111111   12455689999999999999999999997


Q ss_pred             Ccc------c----cc------ccccccccEEEEEEecCCcEEEee---ecCC
Q 012712          415 NAA------D----RA------TLPTNIEQVCFSIYSADYWWSKSQ---NFSC  448 (458)
Q Consensus       415 ~~~------~----~~------~~~~~~~~v~~~~~s~d~~~l~s~---~~d~  448 (458)
                      ...      +    ..      ...+|...+.+.+++|||+||+++   +.|.
T Consensus       341 ~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         341 ADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             HHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             chhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence            521      1    10      125666667778899999999998   5554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.77  E-value=4.8e-19  Score=152.73  Aligned_cols=327  Identities=9%  Similarity=-0.009  Sum_probs=197.2

Q ss_pred             EEEeeCCCcEEEEEcccccccccc--ccc---cccccccceEEe----eeeeEeecCCCceEEEEEecCCCEEEEe-cCC
Q 012712           13 ARTSVDKALVDVWLRELGQLSTRN--FAL---RRRASEDLVLRL----GIYAKLDKHRGCVNTVSFNTDGDILISG-SDD   82 (458)
Q Consensus        13 l~~~~~d~~i~iw~~~~g~~~~~~--~~~---~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~d   82 (458)
                      +++|+.+|.|++|++.+++.++++  |++   ...+..+...++    .....-..|........++|||++|... ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            678889999999999999988773  222   111222211111    0111123455666777778999988555 567


Q ss_pred             CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeE--EEEEcCCC-----------------cEEEeecccccceee
Q 012712           83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS--IVTCAADG-----------------QVRHAQILERGGVET  143 (458)
Q Consensus        83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--l~s~~~dg-----------------~i~vw~~~~~~~~~~  143 (458)
                      .+|.++|+++++....+...+...+..++|+|  +++.  ++..+.+.                 .+..+|..+.+....
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp--dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQK--VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECC--SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEec--cCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            89999999999887766446678899999999  8885  33333321                 123466655554443


Q ss_pred             eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712          144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG  223 (458)
Q Consensus       144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  223 (458)
                      ...   ......+.++|+|+..++++.....+..++..+.+....+...           .....+.+.|+ ++++.. +
T Consensus       172 I~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-----------n~p~~~~~~~d-Gk~~~v-~  235 (441)
T d1qnia2         172 VIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-----------NVERIAAAVKA-GNFKTI-G  235 (441)
T ss_dssp             EEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-----------EHHHHHHHHHT-TCCBCC-T
T ss_pred             Eec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-----------CccceEEEecC-CCEEEe-C
Confidence            222   2356789999999544444433344444454444443333211           11233456676 555554 3


Q ss_pred             CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCC
Q 012712          224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSS  301 (458)
Q Consensus       224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~  301 (458)
                      .++.+.+++....+...               .... ......+.++|||+++++++  ++++.+||+........-.  
T Consensus       236 ~~~v~vvd~~~~~~v~~---------------~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~--  297 (441)
T d1qnia2         236 DSKVPVVDGRGESEFTR---------------YIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK--  297 (441)
T ss_dssp             TCCCCEEECSSSCSSEE---------------EECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS--
T ss_pred             CCCcEEEEcccCCceEE---------------EEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc--
Confidence            46667777655543221               1111 23457899999999887665  5589999987521100000  


Q ss_pred             CccccccccccCCCCccccCCCCCCcccccCceeecCccc-eeeeeEEEEecCCCcEEEEecCCCeEEEEEecC------
Q 012712          302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------  374 (458)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------  374 (458)
                                                  ......+.++.. .......+| +++|+.+.+...|.+|..|++..      
T Consensus       298 ----------------------------~~~~~~~~~~~~~glgplh~~f-d~~g~~yts~~~ds~v~kw~~~~~~~~~~  348 (441)
T d1qnia2         298 ----------------------------IELRDTIVAEPELGLGPLHTTF-DGRGNAYTTLFIDSQVCKWNIADAIKHYN  348 (441)
T ss_dssp             ----------------------------SCGGGGEEECCBCCSCEEEEEE-CSSSEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred             ----------------------------CCcceEEEeecccccCccccee-cCCceEEEcccccceEEEeccchhhhhhc
Confidence                                        000001111110 001244566 99999888999999999999842      


Q ss_pred             ----CeEEEEe-----ecCCceeeEEEecCCCCeEEEee
Q 012712          375 ----GELIRVI-----EADRHVVNCIEPHPHSTVLASSG  404 (458)
Q Consensus       375 ----~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~  404 (458)
                          ...+..+     .+|...+.+.+++|||++|++++
T Consensus       349 ~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         349 GDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             TCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence                1233344     47878888899999999999994

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=5.1e-17  Score=141.71  Aligned_cols=305  Identities=9%  Similarity=-0.052  Sum_probs=183.1

Q ss_pred             CCCCCCCCeEE---EeeCCCc--EEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE
Q 012712            4 ASNNNNNKRAR---TSVDKAL--VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS   78 (458)
Q Consensus         4 ~~~~~~~~~l~---~~~~d~~--i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   78 (458)
                      +...+++++..   +...++.  |.+||..+++.+.                     ++.++..+  .++|+|||++|++
T Consensus        25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~---------------------~~~~~~~~--~~a~spDg~~i~~   81 (368)
T d1mdah_          25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG---------------------HSLGAFLS--LAVAGHSGSDFAL   81 (368)
T ss_dssp             CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEE---------------------EEEECTTC--EEEECTTSSCEEE
T ss_pred             cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEE---------------------EEeCCCCC--cceECCCCCEEEE
Confidence            45567777632   2344555  5566888887663                     34555444  5889999998887


Q ss_pred             ec----------CCCeEEEEECCCcceeeeeccC------CCcceeEEEEccCCCCeEEEEEc-CCCcEEEeecccccce
Q 012712           79 GS----------DDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGV  141 (458)
Q Consensus        79 ~~----------~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~  141 (458)
                      .+          .|+.|.+||..+++.+..+...      .......++|+|  ||++|+++. .++.+.+||+.+++..
T Consensus        82 ~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp--DGk~l~va~~~~~~v~~~d~~~~~~~  159 (368)
T d1mdah_          82 ASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASDD  159 (368)
T ss_dssp             EEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEEE
T ss_pred             EcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC--CCCEEEEEeCCCCeEEEEECCCCcEe
Confidence            53          4678999999999887766211      112234689999  999998876 4799999999988766


Q ss_pred             eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712          142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV  221 (458)
Q Consensus       142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  221 (458)
                      .....  +...    .+.|.++..++..+.||.+.++++................  .  ....+....+.++ +..+.+
T Consensus       160 ~~~~~--~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~-g~~~~~  228 (368)
T d1mdah_         160 QLTKS--ASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG--A--QNCSSQAAQANYP-GMLVWA  228 (368)
T ss_dssp             EEEEC--SSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT--T--SCBCSCCEEETTT-TEEEEC
T ss_pred             EEeec--cCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccc--c--cccceeecccccC-cEEEEe
Confidence            55322  2221    1223333567777888888888876654433222111100  0  2223455677776 455544


Q ss_pred             ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc-ccccccceeEEEeCCCCcEEEEec--C--------CcEEEEEcc
Q 012712          222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYN--D--------EFIYLFTQD  290 (458)
Q Consensus       222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~--~--------~~i~i~~~~  290 (458)
                      .  ++.+++++...............    ..... ..........++++|++..+....  .        ..+.+||..
T Consensus       229 ~--~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         229 V--ASSILQGDIPAAGATMKAAIDGN----ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             B--SSCCEEEECCSSCCEEECCCCSS----CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             c--CCCEEEEeecCCceEEEeecccc----cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence            3  45566676665442211100000    00000 001112334678889887665432  1        138889988


Q ss_pred             CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE--EEEecCCCeEE
Q 012712          291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY--VVSGSDCGRIF  368 (458)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~--l~~~~~dg~i~  368 (458)
                      +++                                      ....+...   ..+.+++| +|||+.  ++++..++.|+
T Consensus       303 t~~--------------------------------------~~~~~~~~---~~~~~~a~-spDG~~~ly~s~~~~~~v~  340 (368)
T d1mdah_         303 VGQ--------------------------------------TSGPISNG---HDSDAIIA-AQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             SCC--------------------------------------EEECCEEE---EEECEEEE-CCSSSCEEEEEETTTTEEE
T ss_pred             CCc--------------------------------------EeEEecCC---CceeEEEE-CCCCCEEEEEEeCCCCeEE
Confidence            742                                      22222221   23788898 999973  45677889999


Q ss_pred             EEEecCCeEEEEeecCCceeeEEEe
Q 012712          369 IWKKKGGELIRVIEADRHVVNCIEP  393 (458)
Q Consensus       369 iwd~~~~~~~~~~~~~~~~v~~~~~  393 (458)
                      +||..+++.++++..... ...|++
T Consensus       341 v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         341 IYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             EEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             EEECCCCCEEEEEECCCC-CCEEEE
Confidence            999999999999875433 455554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.74  E-value=6e-16  Score=139.57  Aligned_cols=150  Identities=9%  Similarity=0.042  Sum_probs=104.8

Q ss_pred             EEEEecCCCEEEEecCCCeEEEEECCCcceeeee----ccCCCcceeEEEEccCCCCeEEEEEcC---------CCcEEE
Q 012712           66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSF----HSGHNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRH  132 (458)
Q Consensus        66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~s~~~---------dg~i~v  132 (458)
                      .+.|.++++++..  .|+.+.+||+.+++....+    +..|...|.++.|+|  |+++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT--TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC--CCCEEEEEECCcceeeeccCceEEE
Confidence            5789999987765  3678999999999875433    134567899999999  9999998753         567889


Q ss_pred             eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC-Ccc-------eeec
Q 012712          133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-RNY-------MTVV  204 (458)
Q Consensus       133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~-------~~~~  204 (458)
                      ||+.+++...   +..+...+..+.|+|||. .++.. .++.+++|+..+++..+.......... .+.       ....
T Consensus        97 ~d~~~~~~~~---l~~~~~~~~~~~~SPDG~-~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1          97 YDLNKRQLIT---EERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             EETTTTEECC---SSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EECCCCcccc---cccCCccccccccccCcc-eeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            9998876432   677888999999999995 45553 567899999998876543321110000 000       0112


Q ss_pred             ceEEEEECCCCCcEEEEecCC
Q 012712          205 NLNAIAIDPRNANLFAVAGSD  225 (458)
Q Consensus       205 ~v~~~~~~p~~~~~l~~~~~d  225 (458)
                      ....+.|+|| ++.|+....|
T Consensus       172 ~~~~~~wSPD-Gk~ia~~~~d  191 (470)
T d2bgra1         172 AYSALWWSPN-GTFLAYAQFN  191 (470)
T ss_dssp             SSBCEEECTT-SSEEEEEEEE
T ss_pred             CccccEECCC-CCccceeEec
Confidence            3456889998 5777776544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.52  E-value=1.2e-11  Score=106.47  Aligned_cols=158  Identities=11%  Similarity=0.041  Sum_probs=98.2

Q ss_pred             ceeEEEeCCCCcEEEEecC--CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712          263 GITGLAFSDQSELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR  340 (458)
Q Consensus       263 ~i~~~~~~~~~~~l~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (458)
                      .+.+++|+|+|+++++...  +.|.+|+......                                   ...........
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~-----------------------------------~~~~~~~~~~~  190 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-----------------------------------VELVGSVDAPD  190 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-----------------------------------EEEEEEEECSS
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc-----------------------------------eeeccceeecC
Confidence            4778999999998887774  4688887654211                                   00111111111


Q ss_pred             ceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEE--EE---ee--------------cCCceeeEEEecCCCCeE
Q 012712          341 NCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELI--RV---IE--------------ADRHVVNCIEPHPHSTVL  400 (458)
Q Consensus       341 ~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~--~~---~~--------------~~~~~v~~~~~s~~~~~l  400 (458)
                      .....+.++| +|+++++++.. .+++|.+|++...+..  ..   +.              .+......+.++|||++|
T Consensus       191 ~g~gPr~i~f-~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         191 PGDHPRWVAM-HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             TTCCEEEEEE-CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCceEEEEE-CCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence            1112577888 99999886554 5789999999765422  11   11              112235678999999998


Q ss_pred             EEeec-C-----CcEEEecCCccccc-------ccccccccEEEEEEec-CCcEEEee-ecCCceEEEEEe
Q 012712          401 ASSGI-E-----SDIKILTPNAADRA-------TLPTNIEQVCFSIYSA-DYWWSKSQ-NFSCSILLFEWL  456 (458)
Q Consensus       401 ~s~~~-d-----~~i~iw~~~~~~~~-------~~~~~~~~v~~~~~s~-d~~~l~s~-~~d~~i~~w~~~  456 (458)
                      +++.. +     ..|..|++......       ...........++++| +|++|+.+ ..++.|.+|+.-
T Consensus       270 yvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            87643 2     23777776542111       1122233467799998 88987655 577889999863

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.45  E-value=1.8e-10  Score=98.99  Aligned_cols=273  Identities=11%  Similarity=0.044  Sum_probs=147.1

Q ss_pred             CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEE--EEEcC-CCcEEEeec
Q 012712           60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSI--VTCAA-DGQVRHAQI  135 (458)
Q Consensus        60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l--~s~~~-dg~i~vw~~  135 (458)
                      ....+.-|+|+|++++|.++.. +.+..|.+.....+... ..........+.+++  +++.+  +++.. .+.+..+.+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~--~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT--NTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC--CCCEEEEEEecCCCCEEEEeEc
Confidence            4556677999999999987765 56778876643222221 112233456778888  88743  33322 455555443


Q ss_pred             ccccc------------eee---eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc
Q 012712          136 LERGG------------VET---KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY  200 (458)
Q Consensus       136 ~~~~~------------~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  200 (458)
                      .....            ...   .........+.++.|+|+++.++++......|.+|+.................    
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~----  190 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD----  190 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS----
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC----
Confidence            22111            000   00011223468999999996555555555688888765433222211111100    


Q ss_pred             eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc-----CCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712          201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD-----FGQPADYFCPPNLIGDEQVGITGLAFSDQSEL  275 (458)
Q Consensus       201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  275 (458)
                       .......++|+|++....++...+++|.+|++...+......     +..+. .................+.++|+|++
T Consensus       191 -~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         191 -PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG-IPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             -TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT-CCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             -CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc-ccccccccccccCCccceEECCCCCE
Confidence             123578899999855455666678999999987654321100     00000 00000011122344668899999999


Q ss_pred             EEEec--CCc-----EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEE
Q 012712          276 LVSYN--DEF-----IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGV  348 (458)
Q Consensus       276 l~~~~--~~~-----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  348 (458)
                      |+++.  ++.     |..|++......                                  .................++
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~----------------------------------~~~~~~~~~~~~G~~p~~i  314 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSI----------------------------------EKQLFLSPTPTSGGHSNAV  314 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCE----------------------------------EEEEEEEECSSCCTTCCCE
T ss_pred             EEEEcccCCCccceEEEEEEecCCCce----------------------------------eeEeEeeEEEcCCCCccEE
Confidence            87764  222     666766542110                                  0000000000000124567


Q ss_pred             EEecC-CCcEEEEe-cCCCeEEEEEecCCe
Q 012712          349 NFFGP-KCEYVVSG-SDCGRIFIWKKKGGE  376 (458)
Q Consensus       349 ~~~s~-~~~~l~~~-~~dg~i~iwd~~~~~  376 (458)
                      ++ +| +|++|+++ ..++.|.+|++....
T Consensus       315 ~~-~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         315 SP-CPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EE-CTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             Ee-cCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            77 87 89988766 466999999986554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2.1e-10  Score=94.41  Aligned_cols=239  Identities=16%  Similarity=0.129  Sum_probs=139.7

Q ss_pred             cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      .|.+-|........   +..+...+...+|+|||+.+.++....+  .+.+.+...+.......           .....
T Consensus        20 ~l~i~d~dG~~~~~---l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~   85 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------FPRHN   85 (269)
T ss_dssp             EEEEEETTSCSCEE---EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-----------CSSCE
T ss_pred             EEEEEcCCCCCcEE---EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee-----------eeccc
Confidence            46666654333322   4445677888999999966555554444  46666666665443332           33356


Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CC--
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DE--  282 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~--  282 (458)
                      ....|+|++..++.....++...++........              ...............+++++..+...+  .+  
T Consensus        86 ~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  151 (269)
T d2hqsa1          86 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP  151 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             ccceecCCCCeeeEeeecCCccceeeccccccc--------------ceeeeeccccccccccccccccceecccccCCc
Confidence            788999985444444444544444433322210              111111233444556777776554433  33  


Q ss_pred             cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712          283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS  362 (458)
Q Consensus       283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~  362 (458)
                      .+.+.++....                                       ...+.....  ......+ +|+++.++..+
T Consensus       152 ~i~~~~~~~~~---------------------------------------~~~~~~~~~--~~~~~~~-spdg~~~~~~~  189 (269)
T d2hqsa1         152 QVYKVNINGGA---------------------------------------PQRITWEGS--QNQDADV-SSDGKFMVMVS  189 (269)
T ss_dssp             EEEEEETTSSC---------------------------------------CEECCCSSS--EEEEEEE-CTTSSEEEEEE
T ss_pred             eEeeeeccccc---------------------------------------ceeeecccc--ccccccc-ccccceeEEEe
Confidence            36666665421                                       112222222  2455666 99999988765


Q ss_pred             CC-CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec---CCcEEEecCCcccccccccccccEEEEEEecC
Q 012712          363 DC-GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---ESDIKILTPNAADRATLPTNIEQVCFSIYSAD  437 (458)
Q Consensus       363 ~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d  437 (458)
                      .+ +...+|..........+..+........|||||+.|+..+.   ...|.++++.++....+....+.+...+|||-
T Consensus       190 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         190 SNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             ecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            54 44444443332222333344556678899999999875544   35789999999888888888888999999983

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=2.7e-10  Score=93.97  Aligned_cols=243  Identities=12%  Similarity=0.127  Sum_probs=154.6

Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE-ecCCCeEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDEYTRL  230 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~i  230 (458)
                      ....+++++++ +++++-..++.|++||.+ ++.+..+.......  +  .......+++.++.+..+++ .+.++.|..
T Consensus        24 ~P~gvavd~dg-~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~--~--~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRD--S--QLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSST--T--CBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccEEEEcCCC-CEEEEECCCCEEEEEeCC-CCEEEEecccCCCc--c--cccccccccccccccccceeccCCcccccc
Confidence            35789999998 677777778899999965 55544442211100  0  11234556665554445544 345567777


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCccccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      ++......               .............+++.++|.++++... ..+.+++.+.                  
T Consensus        98 ~~~~g~~~---------------~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g------------------  144 (279)
T d1q7fa_          98 YNQYGQFV---------------RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------------------  144 (279)
T ss_dssp             ECTTSCEE---------------EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------------------
T ss_pred             ccccccce---------------eecCCCcccccceeccccCCcEEEEeeccceeeEeccCC------------------
Confidence            77543211               1111122345678999999987777664 3577776543                  


Q ss_pred             cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee--cCCce
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--ADRHV  387 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~  387 (458)
                                           .....+...........+++ +++++.+++....+.|++||. +++.+.++.  +....
T Consensus       145 ---------------------~~~~~~g~~~~~~~~~~i~~-d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~  201 (279)
T d1q7fa_         145 ---------------------NVLHKFGCSKHLEFPNGVVV-NDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNY  201 (279)
T ss_dssp             ---------------------CEEEEEECTTTCSSEEEEEE-CSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCS
T ss_pred             ---------------------ceeecccccccccccceeee-ccceeEEeeeccccceeeeec-CCceeeeecccccccC
Confidence                                 12222221111123567777 999999888888999999996 677777763  34445


Q ss_pred             eeEEEecCCCCeEEEeec-CCcEEEecCCccccccc--ccccccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712          388 VNCIEPHPHSTVLASSGI-ESDIKILTPNAADRATL--PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLV  457 (458)
Q Consensus       388 v~~~~~s~~~~~l~s~~~-d~~i~iw~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~  457 (458)
                      ...|++.++|+++++-.. ++.|.+++.+......+  .........+++.|||.++++ +.+.+|++|+|..
T Consensus       202 P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~  273 (279)
T d1q7fa_         202 PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeee
Confidence            789999999997776543 45799999654322222  222335789999999987655 5788999999863

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=5.5e-10  Score=91.79  Aligned_cols=236  Identities=11%  Similarity=0.050  Sum_probs=138.8

Q ss_pred             eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---cEEEeecccccceeeeeccccccceEEEEEcC
Q 012712           84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKLLGKHQGRAHKLAIEP  160 (458)
Q Consensus        84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (458)
                      .|.|-|.+.... ..+ ..+...+...+|||  ||+.||......   .+.+.+...+....   +..+........|+|
T Consensus        20 ~l~i~d~dG~~~-~~l-~~~~~~~~sP~wSP--DGk~IAf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~sp   92 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFSP   92 (269)
T ss_dssp             EEEEEETTSCSC-EEE-EEESSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEECT
T ss_pred             EEEEEcCCCCCc-EEE-ecCCCceeeeEECC--CCCEEEEEEeeccCcceeeeecccCceeE---EeeeecccccceecC
Confidence            577878764444 333 34567788999999  999999765432   35555554444322   445667788899999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe--EEEEecCCCcc
Q 012712          161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKW  238 (458)
Q Consensus       161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~  238 (458)
                      ++..+++....++...++..............         .........+++++...+++...++.  |...++.....
T Consensus        93 dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~  163 (269)
T d2hqsa1          93 DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD---------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  163 (269)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCEEECCC---------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             CCCeeeEeeecCCccceeecccccccceeeee---------ccccccccccccccccceecccccCCceEeeeecccccc
Confidence            99666555555544444433222211111100         11123445667765556666666665  44445544321


Q ss_pred             CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--Cc--EEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712          239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--EF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGS  314 (458)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
                                      ..............|+|+++.++..+.  +.  +.+.+...+                      
T Consensus       164 ----------------~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~----------------------  205 (269)
T d2hqsa1         164 ----------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG----------------------  205 (269)
T ss_dssp             ----------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC----------------------
T ss_pred             ----------------eeeecccccccccccccccceeEEEeecCCceeeeEeecccc----------------------
Confidence                            122223456777899999998887663  23  444444331                      


Q ss_pred             CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC---CCeEEEEEecCCeEEEEeecCCceeeEE
Q 012712          315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGELIRVIEADRHVVNCI  391 (458)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~  391 (458)
                                       ....+. ...  ......| +|||++|+..+.   ...|+++++..+. ...+....+.+...
T Consensus       206 -----------------~~~~~~-~~~--~~~~p~~-SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p  263 (269)
T d2hqsa1         206 -----------------GVQVLS-STF--LDETPSL-APNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFP  263 (269)
T ss_dssp             -----------------CEEECC-CSS--SCEEEEE-CTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEE
T ss_pred             -----------------cceEee-cCc--cccceEE-CCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeE
Confidence                             111111 111  1345567 999999885443   3578899996554 45566667788899


Q ss_pred             EecC
Q 012712          392 EPHP  395 (458)
Q Consensus       392 ~~s~  395 (458)
                      +|||
T Consensus       264 ~WSP  267 (269)
T d2hqsa1         264 AWSP  267 (269)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.41  E-value=9.8e-10  Score=91.75  Aligned_cols=175  Identities=7%  Similarity=0.018  Sum_probs=109.5

Q ss_pred             eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712           52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR  131 (458)
Q Consensus        52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~  131 (458)
                      +.+..+... ..+..++++|||+++++...+++|..|+... +. ..+ ......+.+++|.|  +++++++...++.+.
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~-~~~~~~~~gla~~~--dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIH-ATVEGKVSGLAFTS--NGDLVATGWNADSIP   92 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEE-EECSSEEEEEEECT--TSCEEEEEECTTSCE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEE-EcCCCCcceEEEcC--CCCeEEEecCCceEE
Confidence            444555432 2588999999999999999999998888553 32 222 34567899999999  999999888888888


Q ss_pred             Eeecccccceeee-eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          132 HAQILERGGVETK-LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       132 vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      .++.......... .........+.+++.+++ +++++.+.++.+..+|...+.........................+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~  171 (302)
T d2p4oa1          93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK  171 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred             EEEecccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence            8877554332211 112234567889999999 78888888888888888766432211111111111111112334444


Q ss_pred             ECCCCCcEEEEecCCCeEEEEecCC
Q 012712          211 IDPRNANLFAVAGSDEYTRLYDIRK  235 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~d~~~  235 (458)
                      ++.  ..++++.+..+.|+.++...
T Consensus       172 ~~~--~~l~~~~~~~~~i~~~~~~~  194 (302)
T d2p4oa1         172 RFG--NFLYVSNTEKMLLLRIPVDS  194 (302)
T ss_dssp             EET--TEEEEEETTTTEEEEEEBCT
T ss_pred             ccC--CceeeecCCCCeEEeccccc
Confidence            443  24555555556665555543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=3.6e-10  Score=92.12  Aligned_cols=235  Identities=14%  Similarity=0.102  Sum_probs=146.8

Q ss_pred             cceEEEEEcCCCCeEEEE-ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712          151 GRAHKLAIEPGSPHVFYT-CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR  229 (458)
Q Consensus       151 ~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  229 (458)
                      .....++++++| +++++ .+..+.+..++........... .         .......++++++ ++++++...++.++
T Consensus        14 ~~P~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~~~~~~-~---------~~~~p~gvav~~~-g~i~v~d~~~~~i~   81 (260)
T d1rwia_          14 LSPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPF-N---------GLYQPQGLAVDGA-GTVYVTDFNNRVVT   81 (260)
T ss_dssp             CCEEEEEECTTC-CEEEEECSSSCEEEEEC----CEEECCC-C---------SCCSCCCEEECTT-CCEEEEETTTEEEE
T ss_pred             CCCCEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceEEEecc-C---------CccCceEEEEcCC-CCEEEeeeeeceee
Confidence            345789999999 55554 4555777777655443221110 0         1123567899997 67777776666676


Q ss_pred             EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      +++..+....                ...........+++.++++++++-. .+.+..++......              
T Consensus        82 ~~~~~~~~~~----------------~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--------------  131 (260)
T d1rwia_          82 LAAGSNNQTV----------------LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--------------  131 (260)
T ss_dssp             ECTTCSCCEE----------------CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--------------
T ss_pred             eeeeccceee----------------eeeeeeeecccccccccceeEeecccccccccccccccee--------------
Confidence            6654443211                1111124568899999998877655 33566666543210              


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCcee
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV  388 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  388 (458)
                                             ......+..   ...++++ +++|+++++...++.|..++.............-...
T Consensus       132 -----------------------~~~~~~~~~---~p~~i~~-~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p  184 (260)
T d1rwia_         132 -----------------------TVLPFTGLN---DPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAP  184 (260)
T ss_dssp             -----------------------EECCCCSCC---SCCEEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSE
T ss_pred             -----------------------eeeeecccC---Ccceeee-cCCCCEeeeccccccccccccccceeeeeeccccCCC
Confidence                                   000111111   2456777 8999988888888999999976544333222344567


Q ss_pred             eEEEecCCCCeEEEeecCCcEEEecCCcccccccc-cccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          389 NCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-TNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       389 ~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ..|++.++|+++++....+.|..++.......... ........++++++|.++++-..+++|+.++
T Consensus       185 ~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         185 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            89999999998888888888988887665443332 2334578999999998877766777776554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=9e-10  Score=89.72  Aligned_cols=236  Identities=11%  Similarity=0.046  Sum_probs=145.4

Q ss_pred             cceeEEEEccCCCCeEEEEE-cCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712          105 DNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG  183 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  183 (458)
                      .....+++.+  +|+..++. +..+.+..++......... ... -......+++++++ +++++....+.+++++-...
T Consensus        14 ~~P~~vavd~--dG~i~v~~~~~~~~i~~~~~~~~~~~~~-~~~-~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDS--AGNVYVTSEGMYGRVVKLATGSTGTTVL-PFN-GLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECT--TCCEEEEECSSSCEEEEEC----CEEEC-CCC-SCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcC--CCCEEEEEcCCCCEEEEEcCCCceEEEe-ccC-CccCceEEEEcCCC-CEEEeeeeeceeeeeeeccc
Confidence            3457999999  99876665 4456777776554332221 122 12345778999998 67777777677776654444


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG  263 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      .......           ....+.++++.++ ++++++-..+..+..++........               ........
T Consensus        89 ~~~~~~~-----------~~~~p~~iavd~~-g~i~v~d~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  141 (260)
T d1rwia_          89 QTVLPFD-----------GLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTV---------------LPFTGLND  141 (260)
T ss_dssp             CEECCCC-----------SCCSEEEEEECTT-CCEEEEEGGGTEEEEECTTCSSCEE---------------CCCCSCCS
T ss_pred             eeeeeee-----------eeeeccccccccc-ceeEeeccccccccccccccceeee---------------eeecccCC
Confidence            3322211           1224688999997 5777776667777777765533110               01111234


Q ss_pred             eeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec-Cccc
Q 012712          264 ITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRN  341 (458)
Q Consensus       264 i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  341 (458)
                      ...++++++|+++++.. .+.|..++.+...                                       ...+. ....
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~---------------------------------------~~~~~~~~~~  182 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNN---------------------------------------QVVLPFTDIT  182 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTCC---------------------------------------EEECCCSSCC
T ss_pred             cceeeecCCCCEeeeccccccccccccccce---------------------------------------eeeeeccccC
Confidence            56899999998777765 4578888876521                                       11111 1111


Q ss_pred             eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712          342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPN  415 (458)
Q Consensus       342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~  415 (458)
                        ....+++ +++|+++++-...+.|..++..... ...+. ..-.....|+++++|.++++-..+++|+..+..
T Consensus       183 --~p~gi~~-d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         183 --APWGIAV-DEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             --SEEEEEE-CTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             --CCcccee-eeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence              2467887 9999988888888999888764432 23332 223457899999999988876767777766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.34  E-value=2.7e-10  Score=95.25  Aligned_cols=237  Identities=11%  Similarity=0.026  Sum_probs=147.3

Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY  231 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  231 (458)
                      .+..+++.|+| +++++...+++|..|+... +......           ....+.+++|+|+ ++++++...++.+..+
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g-~~~~~~~-----------~~~~~~gla~~~d-G~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPDG-NQQIHAT-----------VEGKVSGLAFTSN-GDLVATGWNADSIPVV   94 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTC-CEEEEEE-----------CSSEEEEEEECTT-SCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCCC-CEEEEEc-----------CCCCcceEEEcCC-CCeEEEecCCceEEEE
Confidence            47789999999 6888988899999988553 3222222           2346889999998 6788888888888888


Q ss_pred             ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712          232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS  310 (458)
Q Consensus       232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
                      +.........            .............+++.++|+++++.+ .+.+..++...+.......           
T Consensus        95 ~~~~~~~~~~------------~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~-----------  151 (302)
T d2p4oa1          95 SLVKSDGTVE------------TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE-----------  151 (302)
T ss_dssp             EEECTTSCEE------------EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------
T ss_pred             Eeccccccee------------eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEec-----------
Confidence            8755321100            000111234578899999999888766 4467777766531100000           


Q ss_pred             ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEE--eecCCcee
Q 012712          311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRV--IEADRHVV  388 (458)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v  388 (458)
                                         .........+........+.+ +. +.++++.+..+.|+.++.........  ........
T Consensus       152 -------------------~~~~~~~~~~~~~~~~ngi~~-~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  210 (302)
T d2p4oa1         152 -------------------HPMLARSNSESVFPAANGLKR-FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI  210 (302)
T ss_dssp             -------------------CGGGSCSSTTCCSCSEEEEEE-ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC
T ss_pred             -------------------CCccceeeccCcccccccccc-cC-CceeeecCCCCeEEeccccccccccccccccCCCCC
Confidence                               000000001111112455555 43 34555667788999998765432211  11123346


Q ss_pred             eEEEecCCCCeEEEeecCCcEEEecCCcccc--cccccccccEEEEEE---ecCCcEEEeeec
Q 012712          389 NCIEPHPHSTVLASSGIESDIKILTPNAADR--ATLPTNIEQVCFSIY---SADYWWSKSQNF  446 (458)
Q Consensus       389 ~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~v~~~~~---s~d~~~l~s~~~  446 (458)
                      ..+++.++|+++++...++.|..++......  ..........++++|   ++|++.|...+.
T Consensus       211 dgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         211 DDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             SSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             cceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            7899999999888888899999998876532  233334456899999   678877755443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.30  E-value=2.4e-08  Score=83.71  Aligned_cols=109  Identities=16%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC----CcEE
Q 012712           56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----GQVR  131 (458)
Q Consensus        56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~i~  131 (458)
                      .+......+..++|.++|++.++-...+.|..|+.+.++....+ .........+++.+  +|+++++...+    +.+.
T Consensus        34 ~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~~~~~~p~gla~~~--dG~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          34 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEE
T ss_pred             EeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-eCCCCCeeEEEECC--CCCEEEEecCCCccceeEE
Confidence            33444455678999999998888778899999998776654444 34556788999999  99888775432    2344


Q ss_pred             EeecccccceeeeeccccccceEEEEEcCCCCeEEEE
Q 012712          132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT  168 (458)
Q Consensus       132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  168 (458)
                      ..+...........-..-....+.+++.++| ++.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vt  146 (319)
T d2dg1a1         111 AATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFT  146 (319)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEE
T ss_pred             EEcCCCceeeeeccCCCcccCCcceeEEecc-ceeec
Confidence            4444333322211111122346778889988 55444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.6e-09  Score=95.78  Aligned_cols=347  Identities=10%  Similarity=0.038  Sum_probs=180.1

Q ss_pred             CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe------
Q 012712            6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG------   79 (458)
Q Consensus         6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~------   79 (458)
                      +.+++.++. -..+|.|.+||+.+++...-                  +..-.-..-.+....||||+++++..      
T Consensus        24 W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l------------------~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          24 WISDTEFIY-REQKGTVRLWNVETNTSTVL------------------IEGKKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             BSSSSCBCC-CCSSSCEEEBCGGGCCCEEE------------------ECTTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EeCCCcEEE-EeCCCcEEEEECCCCCEEEE------------------EcCccccccccceeEECCCCCeEEEEEcccce
Confidence            445665554 34578899999998764210                  00001122356678899999988765      


Q ss_pred             ---cCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc----
Q 012712           80 ---SDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG----  151 (458)
Q Consensus        80 ---~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~----  151 (458)
                         +..+.+.++|+.++...... .......+....|||  ||+.||... ++.|.+.+...+...+.. ..+...    
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP--DG~~iafv~-~~nl~~~~~~~~~~~~lt-~~g~~~~i~n  160 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP--KGQQLIFIF-ENNIYYCAHVGKQAIRVV-STGKEGVIYN  160 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS--STTCEEEEE-TTEEEEESSSSSCCEEEE-CCCBTTTEEE
T ss_pred             eEeeccccEEEEEccCCceeeccCccCCccccceeeecc--CCceEEEEe-cceEEEEecCCCceEEEe-cccCcceeec
Confidence               33578999999988753322 122345567789999  999999876 467888887665544321 111111    


Q ss_pred             -------------ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          152 -------------RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       152 -------------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                                   .-.++-|+|||..+++.--.+..+..+.+......               ....+..+.+..- +.-
T Consensus       161 G~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~---------------~~p~~~~~~Yp~~-G~~  224 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS---------------IYPTVKPYHYPKA-GSE  224 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS---------------SSCCCEEEECCBT-TSC
T ss_pred             cccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccc---------------ccceeeeeecccc-CCC
Confidence                         12467899999654444434455555543221000               0001122222111 100


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---C--cEEEEEccCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---E--FIYLFTQDMGL  293 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~--~i~i~~~~~~~  293 (458)
                          .....+.++|+..+......         .+..........+..+.|+|++++++...+   +  .+.++|..++.
T Consensus       225 ----np~~~l~v~d~~~~~~~~~~---------~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         225 ----NPSISLHVIGLNGPTHDLEM---------MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             ----CCEEEEEEEESSSSCCCEEC---------CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             ----CCceeEEEEecCCCcEEEEE---------eccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence                01124777887665321100         001111122345788999999987776542   2  37778877642


Q ss_pred             CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc-cee--eeeEEEEecCCCcEEE---EecCC--C
Q 012712          294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-NCV--TVKGVNFFGPKCEYVV---SGSDC--G  365 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~~~~~~s~~~~~l~---~~~~d--g  365 (458)
                      .                                      ...+.... ...  .-....| +|||+.++   ..-.+  +
T Consensus       292 ~--------------------------------------~~~~~e~~~~wv~~~~~~p~~-~~dg~~~~fi~~se~~g~~  332 (465)
T d1xfda1         292 C--------------------------------------TKKHEDESEAWLHRQNEEPVF-SKDGRKFFFIRAIPQGGRG  332 (465)
T ss_dssp             E--------------------------------------EEEEEEECSSCCCCCCCCCEE-CTTSCSEEEEEEECCSSSS
T ss_pred             E--------------------------------------EEEEEEcCCceEeccCCceeE-ccCCCeeEEEEeeeecccC
Confidence            1                                      11111000 000  0112234 89998443   22222  2


Q ss_pred             eEEEEEec------CCeEEEEeecCCceeeEE-EecCCCCeEE-EeecC--CcEEEec--CCcccccc-c---ccccccE
Q 012712          366 RIFIWKKK------GGELIRVIEADRHVVNCI-EPHPHSTVLA-SSGIE--SDIKILT--PNAADRAT-L---PTNIEQV  429 (458)
Q Consensus       366 ~i~iwd~~------~~~~~~~~~~~~~~v~~~-~~s~~~~~l~-s~~~d--~~i~iw~--~~~~~~~~-~---~~~~~~v  429 (458)
                      .++...+.      .++.+..+....-.|..+ +|+++++.|. ++..+  +.-.+|.  +.++.... +   .......
T Consensus       333 ~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~  412 (465)
T d1xfda1         333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY  412 (465)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred             ceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCE
Confidence            34444432      233334444334445554 6888877654 44333  2333444  44332221 1   2233457


Q ss_pred             EEEEEecCCcEEEe
Q 012712          430 CFSIYSADYWWSKS  443 (458)
Q Consensus       430 ~~~~~s~d~~~l~s  443 (458)
                      .++.|||+|++++.
T Consensus       413 ~~~~~S~~~~y~v~  426 (465)
T d1xfda1         413 FSASFSHSMDFFLL  426 (465)
T ss_dssp             CEEEECTTSSEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            78999999988873

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.28  E-value=1e-08  Score=85.63  Aligned_cols=259  Identities=14%  Similarity=0.123  Sum_probs=145.8

Q ss_pred             ceEEEEEcCCCCeEEEEecC-------CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712          152 RAHKLAIEPGSPHVFYTCGE-------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS  224 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  224 (458)
                      ....++|.|+| +++++...       ++.|..||..++........ ....     .......++|.++ ++.++++..
T Consensus        19 g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~-~~~~-----~~g~P~Gl~~~~d-g~~l~vad~   90 (314)
T d1pjxa_          19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVNG-----YGGIPAGCQCDRD-ANQLFVADM   90 (314)
T ss_dssp             TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EETT-----EECCEEEEEECSS-SSEEEEEET
T ss_pred             CCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCcEEEEECC-cccc-----CCCcceeEEEeCC-CCEEEEEEC
Confidence            35668899999 55554322       46799999887764332211 1000     1223578999998 566666766


Q ss_pred             CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcc
Q 012712          225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVS  304 (458)
Q Consensus       225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~  304 (458)
                      .+.|..++..........           .......-...+.+++.++|.+.++...+....++......         .
T Consensus        91 ~~~i~~~~~~g~~~~~~~-----------~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~---------~  150 (314)
T d1pjxa_          91 RLGLLVVQTDGTFEEIAK-----------KDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ---------E  150 (314)
T ss_dssp             TTEEEEEETTSCEEECCS-----------BCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS---------S
T ss_pred             CCeEEEEeCCCcEEEEEe-----------ccccccccCCCcEEEECCCCCEEEecCccCcccccccceec---------c
Confidence            677888887654321100           00000011235778999999887764322111111000000         0


Q ss_pred             ccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-----EEEEecCCCeEEEEEecCCeEEE
Q 012712          305 TRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-----YVVSGSDCGRIFIWKKKGGELIR  379 (458)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-----~l~~~~~dg~i~iwd~~~~~~~~  379 (458)
                      .......+.++              ........+-.   .-+.++| +|++.     ++++-+..+.|+.|++.....+.
T Consensus       151 ~~G~v~~~~~d--------------g~~~~~~~~~~---~pNGi~~-~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~  212 (314)
T d1pjxa_         151 KFGSIYCFTTD--------------GQMIQVDTAFQ---FPNGIAV-RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE  212 (314)
T ss_dssp             SCEEEEEECTT--------------SCEEEEEEEES---SEEEEEE-EECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred             CCceEEEEeec--------------CceeEeeCCcc---eeeeeEE-CCCCCcceeEEEEEeecccceEEeeccCccccc
Confidence            00000000000              11111111111   1356777 77764     44555678899999876432222


Q ss_pred             ------Eeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc-cccccccEEEEEEecCCc-EEEeeecCCce
Q 012712          380 ------VIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT-LPTNIEQVCFSIYSADYW-WSKSQNFSCSI  450 (458)
Q Consensus       380 ------~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~v~~~~~s~d~~-~l~s~~~d~~i  450 (458)
                            .+.+ +......+++.++|++.++....+.|.+|+.++++... +.......++++|.||++ +.++.+.+++|
T Consensus       213 ~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i  292 (314)
T d1pjxa_         213 NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcE
Confidence                  1221 22346789999999988887778999999999887553 444456789999999996 44666777888


Q ss_pred             EEEEEe
Q 012712          451 LLFEWL  456 (458)
Q Consensus       451 ~~w~~~  456 (458)
                      .-.++-
T Consensus       293 ~~~~~~  298 (314)
T d1pjxa_         293 WKFEWQ  298 (314)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            777653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.26  E-value=3.8e-09  Score=88.30  Aligned_cols=249  Identities=8%  Similarity=0.040  Sum_probs=145.8

Q ss_pred             ceeEEEEccCCCCeEEEEEcC-------CCcEEEeecccccceeeee--ccccccceEEEEEcCCCCeEEEEecCCCeEE
Q 012712          106 NVFQAKIMPFTDDRSIVTCAA-------DGQVRHAQILERGGVETKL--LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ  176 (458)
Q Consensus       106 ~i~~~~~~~~~~~~~l~s~~~-------dg~i~vw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  176 (458)
                      ....++|.|  +|+++++...       +|.|..||..++.......  ..........++|.+++ ++++++...+.|.
T Consensus        19 g~EGpa~d~--dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i~   95 (314)
T d1pjxa_          19 GAEGPVFDK--NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRLGLL   95 (314)
T ss_dssp             TCEEEEECT--TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEEEETTTEEE
T ss_pred             CCeEeEEeC--CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-CEEEEEECCCeEE
Confidence            356788999  9988776543       4678888887765432211  11122346789999998 5566666666788


Q ss_pred             EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---------------CCeEEEEecCCCccCCC
Q 012712          177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---------------DEYTRLYDIRKYKWDGS  241 (458)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~  241 (458)
                      .++..............     +. .-..++.+++.|+ +++.++-..               .|.|..++... +.   
T Consensus        96 ~~~~~g~~~~~~~~~~~-----g~-~~~~pndl~~d~~-G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~---  164 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSE-----GR-RMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM---  164 (314)
T ss_dssp             EEETTSCEEECCSBCTT-----SC-BCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE---
T ss_pred             EEeCCCcEEEEEecccc-----cc-ccCCCcEEEECCC-CCEEEecCccCcccccccceeccCCceEEEEeecC-ce---
Confidence            88876553221111100     00 1113578899998 556555321               12333333221 10   


Q ss_pred             ccCCCCCCCcCCCccccccccceeEEEeCCCCc-----EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712          242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-----LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD  315 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (458)
                                   ..........+.++|+|++.     ++++-+ .+.|+.|++........                  
T Consensus       165 -------------~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~------------------  213 (314)
T d1pjxa_         165 -------------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------  213 (314)
T ss_dssp             -------------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE------------------
T ss_pred             -------------eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce------------------
Confidence                         01111123346788988764     334433 45788888754211000                  


Q ss_pred             CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC
Q 012712          316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP  395 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  395 (458)
                                    .+....+.+.... ..-.+++ +++|++.++....+.|++||.+.++.+..+......+++++|.|
T Consensus       214 --------------~~~~~~~~~~~~~-~pdGiav-D~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~  277 (314)
T d1pjxa_         214 --------------KKVWGHIPGTHEG-GADGMDF-DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP  277 (314)
T ss_dssp             --------------EEEEEECCCCSSC-EEEEEEE-BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT
T ss_pred             --------------eeEEEEccccccc-cceeeEE-ecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC
Confidence                          0111112211111 2456787 99999888777789999999887877777776666789999999


Q ss_pred             CCC-eEEEeecCCcEEEecCC
Q 012712          396 HST-VLASSGIESDIKILTPN  415 (458)
Q Consensus       396 ~~~-~l~s~~~d~~i~iw~~~  415 (458)
                      |++ ++++.+.+|.|...++.
T Consensus       278 d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         278 QTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEECCCCcEEEEECC
Confidence            997 45666777888877764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=2.5e-08  Score=81.92  Aligned_cols=244  Identities=15%  Similarity=0.183  Sum_probs=151.8

Q ss_pred             ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC-----CCcceeEEEEccCCCCeEEEEE-cCCCcEEEeecc
Q 012712           63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG-----HNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQIL  136 (458)
Q Consensus        63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~s~-~~dg~i~vw~~~  136 (458)
                      .-..|+++++|+++++-..+..|++||.+ ++.+..+...     .......+++.+. .+..+++. +.++.|..++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccc-ccccceeccCCcccccccccc
Confidence            35799999999988887778899999965 6665555211     1123345565551 34444443 345677777653


Q ss_pred             cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712          137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA  216 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  216 (458)
                       +..... .-.........+++.+++ .++++....+.+.+++.. ++.+..+....        .......+++.++ +
T Consensus       102 -g~~~~~-~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~--------~~~~~~~i~~d~~-g  168 (279)
T d1q7fa_         102 -GQFVRK-FGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSK--------HLEFPNGVVVNDK-Q  168 (279)
T ss_dssp             -SCEEEE-ECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTT--------TCSSEEEEEECSS-S
T ss_pred             -ccceee-cCCCcccccceeccccCC-cEEEEeeccceeeEeccC-Cceeecccccc--------cccccceeeeccc-e
Confidence             333222 122344567789999998 677777777888888754 44444332211        2235678889987 6


Q ss_pred             cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-cEEEEEccCCCC
Q 012712          217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLG  294 (458)
Q Consensus       217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~~~~~~~~  294 (458)
                      +++++....+.|++||...... ...  +           ..+.......+++.++|+++++-. ++ .|.+|+...   
T Consensus       169 ~i~v~d~~~~~V~~~d~~G~~~-~~~--g-----------~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G---  231 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYEGQYL-RQI--G-----------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---  231 (279)
T ss_dssp             EEEEEEGGGTEEEEEETTCCEE-EEE--S-----------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---
T ss_pred             eEEeeeccccceeeeecCCcee-eee--c-----------ccccccCCcccccccCCeEEEEECCCCcEEEEECCCC---
Confidence            8888888889999999754321 110  0           011234567899999999887754 33 588887432   


Q ss_pred             CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712          295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  374 (458)
                                                          ..+..+...........+++ .|+|+++++ +.+++|++|....
T Consensus       232 ------------------------------------~~~~~~~~~~~~~~p~~vav-~~dG~l~V~-~~n~~v~~fr~~~  273 (279)
T d1q7fa_         232 ------------------------------------QLISALESKVKHAQCFDVAL-MDDGSVVLA-SKDYRLYIYRYVQ  273 (279)
T ss_dssp             ------------------------------------CEEEEEEESSCCSCEEEEEE-ETTTEEEEE-ETTTEEEEEECSC
T ss_pred             ------------------------------------CEEEEEeCCCCCCCEeEEEE-eCCCcEEEE-eCCCeEEEEEeee
Confidence                                                22222222211113567887 999976554 5689999999865


Q ss_pred             Ce
Q 012712          375 GE  376 (458)
Q Consensus       375 ~~  376 (458)
                      ..
T Consensus       274 ~~  275 (279)
T d1q7fa_         274 LA  275 (279)
T ss_dssp             CC
T ss_pred             ec
Confidence            54

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.6e-09  Score=92.29  Aligned_cols=321  Identities=10%  Similarity=-0.010  Sum_probs=159.3

Q ss_pred             EEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc-cccceEEEEEcCCCCeEEEEe--------cCCCeEEEEeC
Q 012712          110 AKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK-HQGRAHKLAIEPGSPHVFYTC--------GEDGLVQHFDL  180 (458)
Q Consensus       110 ~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~--------~~dg~i~iwd~  180 (458)
                      ..|.+  ++.++. -..+|.|.+||+.+++......... ....+....|+||+..+++..        +..+.+.++|+
T Consensus        22 ~~W~~--~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~   98 (465)
T d1xfda1          22 AKWIS--DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI   98 (465)
T ss_dssp             CCBSS--SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             CEEeC--CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEc
Confidence            46887  776554 4557899999998877543211111 223567788999996555543        34578999999


Q ss_pred             CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcC--CCccc-
Q 012712          181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC--PPNLI-  257 (458)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~-  257 (458)
                      .+++.........        ....+....|+|| ++.+|-.. ++.|.+.+...+.......-+.....+.  +-... 
T Consensus        99 ~~~~~~~l~~~~~--------~~~~l~~~~wSPD-G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vye  168 (465)
T d1xfda1          99 PHGDPQSLDPPEV--------SNAKLQYAGWGPK-GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (465)
T ss_dssp             SSCCCEECCCTTC--------CSCCCSBCCBCSS-TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             cCCceeeccCccC--------CccccceeeeccC-CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhh
Confidence            9887544322110        2223556789998 55665543 5678888877654321111110000000  00000 


Q ss_pred             cccccceeEEEeCCCCcEEEEec-C-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccc--cCc
Q 012712          258 GDEQVGITGLAFSDQSELLVSYN-D-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR--IAP  333 (458)
Q Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~-~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  333 (458)
                      ......-..+-|||||+.||... + ..+..+.+....... .+.......+..+...+................  ...
T Consensus       169 ee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~-~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~  247 (465)
T d1xfda1         169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI-YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP  247 (465)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS-SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred             hhhccccceEEECCCCCeEEEEEecccccceeecccccccc-cceeeeeeccccCCCCCceeEEEEecCCCcEEEEEecc
Confidence            00011124678999999999876 3 346666553311000 000000000000110110000000000000000  000


Q ss_pred             eeecCccceeeeeEEEEecCCCcEEEEecC----CCeEEEEEecCCeEEEEeecC-Ccee----eEEEecCCCCeEEE--
Q 012712          334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSD----CGRIFIWKKKGGELIRVIEAD-RHVV----NCIEPHPHSTVLAS--  402 (458)
Q Consensus       334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~-~~~v----~~~~~s~~~~~l~s--  402 (458)
                      .....  ....+..+.| +|++++++....    ...+.++|..+++....+... .+.|    ....|+|||+.++.  
T Consensus       248 ~~~~~--~~~y~~~~~W-~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~  324 (465)
T d1xfda1         248 DDPRM--REYYITMVKW-ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR  324 (465)
T ss_dssp             CCGGG--SSEEEEEEEE-SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred             CcCcc--ccceeeeeEE-cCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEE
Confidence            01111  1123667787 999987765322    236888999998776555432 2222    34689999985432  


Q ss_pred             -eecCC--cEEEec-------CCcccccccccccccEEEE-EEecCCcEEE-eeecC
Q 012712          403 -SGIES--DIKILT-------PNAADRATLPTNIEQVCFS-IYSADYWWSK-SQNFS  447 (458)
Q Consensus       403 -~~~d~--~i~iw~-------~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~-s~~~d  447 (458)
                       ...+|  .+....       ........+....-.|..+ .|+++++.+. ++..+
T Consensus       325 ~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~  381 (465)
T d1xfda1         325 AIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED  381 (465)
T ss_dssp             EECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred             eeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCC
Confidence             22233  333322       2233334555555556665 5888886664 34433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.07  E-value=1e-07  Score=79.69  Aligned_cols=235  Identities=10%  Similarity=0.022  Sum_probs=137.4

Q ss_pred             CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC---
Q 012712            5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD---   81 (458)
Q Consensus         5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---   81 (458)
                      .+.++|.+.++-...+.|..|+.++++..                     ..+.........+++++||+++++...   
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~---------------------~~~~~~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------RPFVSHKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEE---------------------EEEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCeEE---------------------EEEeCCCCCeeEEEECCCCCEEEEecCCCc
Confidence            45677777666667777877777754433                     123344556789999999998877543   


Q ss_pred             -CCeEEEEECCCcceeeeecc-CCCcceeEEEEccCCCCeEEEEEcCC------CcEEEeecccccceeeeeccccccce
Q 012712           82 -DRRVILWDWKTERVKLSFHS-GHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRA  153 (458)
Q Consensus        82 -d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v  153 (458)
                       .+.+...+............ .-......+++.|  +|++.++....      +.+..++.... .+..  +...-...
T Consensus       105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~--~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~--~~~~~~~p  179 (319)
T d2dg1a1         105 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTP--IIQNISVA  179 (319)
T ss_dssp             SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSC-CEEE--EEEEESSE
T ss_pred             cceeEEEEcCCCceeeeeccCCCcccCCcceeEEe--ccceeecccccccccCcceeEEEecccc-eeEE--Eeecccee
Confidence             23455555554443322211 1234577899999  99877764321      22444443222 2221  22223445


Q ss_pred             EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712          154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD  232 (458)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  232 (458)
                      +.++|+|+++.++++-+..+.|..|++..... .............   .......+++.++ +++.++....+.|.+||
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~---~~~~PdGl~vD~~-G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT---GHEGPDSCCIDSD-DNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC---SSSEEEEEEEBTT-CCEEEEEETTTEEEEEC
T ss_pred             eeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccC---CccceeeeeEcCC-CCEEEEEcCCCEEEEEC
Confidence            78999999966667778889999999865422 1111110000000   1123567999997 67777778889999999


Q ss_pred             cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712          233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                      . .++.+....+         ......+...+++++|.+++..++..
T Consensus       256 p-~G~~l~~i~~---------P~~~~~~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         256 K-RGYPIGQILI---------PGRDEGHMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             T-TSCEEEEEEC---------TTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             C-CCcEEEEEeC---------CCcCCCcCceeeeEEEeCCCCEEEEE
Confidence            6 4554333222         11111234467899999987655443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.91  E-value=5.6e-08  Score=79.98  Aligned_cols=100  Identities=16%  Similarity=0.084  Sum_probs=69.9

Q ss_pred             CCCCCCCC--CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe
Q 012712            2 DDASNNNN--NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG   79 (458)
Q Consensus         2 ~~~~~~~~--~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   79 (458)
                      ...+.+|+  |+++|-.+ +|.|.+.|+.+|+..                      .|..+.+.+...+|||||+.||-.
T Consensus         2 ~~~~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~----------------------~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2           2 PNLLLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR----------------------KIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             CCCCEEEEEETTEEEEEE-TTEEEEEETTTCCEE----------------------EEECSSSEEEEEEECTTSSEEEEE
T ss_pred             CCcccCCCCCCCEEEEEe-CCcEEEEECCCCCEE----------------------EEecCCCcccCEEECCCCCEEEEE
Confidence            34566899  99988766 567888899976643                      366678889999999999999854


Q ss_pred             c----CC--CeEEEEECCCcceeeeecc-----CCCcceeEEEEccCCCCeEEEEEcC
Q 012712           80 S----DD--RRVILWDWKTERVKLSFHS-----GHNDNVFQAKIMPFTDDRSIVTCAA  126 (458)
Q Consensus        80 ~----~d--~~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~l~s~~~  126 (458)
                      .    .+  ..|.+++..+++.......     ..........|+|  +++.|+....
T Consensus        59 ~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~  114 (281)
T d1k32a2          59 VMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDA  114 (281)
T ss_dssp             EEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT--TCCEEEEECT
T ss_pred             EeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC--CCCEEEEEEc
Confidence            3    22  2477778877765432211     1223456788999  9999887543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.89  E-value=8.5e-06  Score=66.83  Aligned_cols=228  Identities=11%  Similarity=0.044  Sum_probs=132.8

Q ss_pred             EEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712           66 TVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK  144 (458)
Q Consensus        66 ~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  144 (458)
                      +..|.+.. .+..+--..+.|..||.++++.. .+  .....+.++++.+  ++.+++++ .+ .+.++|..+++.....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~--~~~~~~~~i~~~~--dg~l~va~-~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKIS--DSKQLIAS-DD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEE--TTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE--ECCCCcEEEEEec--CCCEEEEE-eC-ccEEeecccceeeEEe
Confidence            45688754 44445446688999999887653 22  2345688999988  88877764 44 5888998877643321


Q ss_pred             ecc--ccccceEEEEEcCCCCeEEEEecC----CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712          145 LLG--KHQGRAHKLAIEPGSPHVFYTCGE----DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL  218 (458)
Q Consensus       145 ~~~--~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  218 (458)
                      ...  .....++.+.+.|+| ++.++...    .+.-.+|.+..++......           .....+.++|++++..+
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-----------~~~~~Ng~~~s~d~~~l  162 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-----------DISIPNSICFSPDGTTG  162 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEEEEE-----------EESSEEEEEECTTSCEE
T ss_pred             eeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcEEEEee-----------ccCCcceeeecCCCceE
Confidence            111  122357888999999 44444321    1223444444443322221           11234566677764444


Q ss_pred             EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712          219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP  298 (458)
Q Consensus       219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~  298 (458)
                      +++-+..+.|..|++......                 ..   ...          .                       
T Consensus       163 ~~~dt~~~~I~~~~~d~~~~~-----------------~~---~~~----------~-----------------------  189 (295)
T d2ghsa1         163 YFVDTKVNRLMRVPLDARTGL-----------------PT---GKA----------E-----------------------  189 (295)
T ss_dssp             EEEETTTCEEEEEEBCTTTCC-----------------BS---SCC----------E-----------------------
T ss_pred             EEeecccceeeEeeecccccc-----------------cc---cce----------E-----------------------
Confidence            455555666666665322100                 00   000          0                       


Q ss_pred             CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712          299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI  378 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  378 (458)
                                                       ....+.+...  ....+++ +.+|++.++.-..+.|..||. +++.+
T Consensus       190 ---------------------------------~~~~~~~~~g--~pdG~~v-D~~GnlWva~~~~g~V~~~dp-~G~~~  232 (295)
T d2ghsa1         190 ---------------------------------VFIDSTGIKG--GMDGSVC-DAEGHIWNARWGEGAVDRYDT-DGNHI  232 (295)
T ss_dssp             ---------------------------------EEEECTTSSS--EEEEEEE-CTTSCEEEEEETTTEEEEECT-TCCEE
T ss_pred             ---------------------------------EEeccCcccc--cccceEE-cCCCCEEeeeeCCCceEEecC-CCcEe
Confidence                                             0000001111  2456777 999998877767789999995 78999


Q ss_pred             EEeecCCceeeEEEec-CCCCeEEE
Q 012712          379 RVIEADRHVVNCIEPH-PHSTVLAS  402 (458)
Q Consensus       379 ~~~~~~~~~v~~~~~s-~~~~~l~s  402 (458)
                      ..+.-....+++++|- ||.+.|..
T Consensus       233 ~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         233 ARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             eEecCCCCceEEEEEeCCCCCEEEE
Confidence            8887666679999995 67665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.86  E-value=3.3e-06  Score=69.35  Aligned_cols=223  Identities=9%  Similarity=0.002  Sum_probs=138.6

Q ss_pred             EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712          155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR  234 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  234 (458)
                      ...|++....++.+--..+.|..||..+++.. .+.           ....+.++++.++ +.++++ +.+ .+.++|..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-----------~~~~~~~i~~~~d-g~l~va-~~~-gl~~~d~~   86 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-----------LPFMGSALAKISD-SKQLIA-SDD-GLFLRDTA   86 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-----------CSSCEEEEEEEET-TEEEEE-ETT-EEEEEETT
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-----------CCCCcEEEEEecC-CCEEEE-EeC-ccEEeecc
Confidence            45687765466666667789999999887542 332           2225778888887 555554 444 58899998


Q ss_pred             CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-----CcEEEEEccCCCCCCCCCCCCccccccc
Q 012712          235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-----EFIYLFTQDMGLGPNPPPSSPVSTRSEA  309 (458)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
                      +++.......           ........++.+.+.|+|++.++...     +.-.+|.+..+                 
T Consensus        87 tg~~~~l~~~-----------~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-----------------  138 (295)
T d2ghsa1          87 TGVLTLHAEL-----------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-----------------  138 (295)
T ss_dssp             TCCEEEEECS-----------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-----------------
T ss_pred             cceeeEEeee-----------ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC-----------------
Confidence            8763211000           01112346788999999997776542     13455554432                 


Q ss_pred             cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCC------eE--EEE
Q 012712          310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGG------EL--IRV  380 (458)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~------~~--~~~  380 (458)
                                           .......+..   ..+.+++ +++++.++ +-+..+.|+.|++...      +.  ...
T Consensus       139 ---------------------~~~~~~~~~~---~~Ng~~~-s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~  193 (295)
T d2ghsa1         139 ---------------------KVTKLFADIS---IPNSICF-SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID  193 (295)
T ss_dssp             ---------------------EEEEEEEEES---SEEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             ---------------------cEEEEeeccC---Ccceeee-cCCCceEEEeecccceeeEeeecccccccccceEEEec
Confidence                                 1112222212   1467777 99998665 5556789999987421      11  122


Q ss_pred             eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEe-cCCcEE-Eeee
Q 012712          381 IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYS-ADYWWS-KSQN  445 (458)
Q Consensus       381 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l-~s~~  445 (458)
                      +.+..+....+++..+|++.++.-..+.|..|+.+......+.-....+++++|- ||.+.| +|..
T Consensus       194 ~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         194 STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             cCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            2334556889999999998877767789999998655444444344579999996 676554 4433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.77  E-value=8.2e-07  Score=72.75  Aligned_cols=96  Identities=15%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             EEecC--CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-C-----CcEEEeeccccc
Q 012712           68 SFNTD--GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-D-----GQVRHAQILERG  139 (458)
Q Consensus        68 ~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d-----g~i~vw~~~~~~  139 (458)
                      ..|||  |+.+|-.+ ++.|.+.|+.+++.. .+ ..+.+.+...+|||  ||+.||.... +     ..|.+.+...++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~L-t~~~~~~~~p~~SP--DG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KI-VSNLGVINNARFFP--DGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EE-ECSSSEEEEEEECT--TSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EE-ecCCCcccCEEECC--CCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            35788  99888654 467888899988764 33 46777889999999  9999986542 2     136666665555


Q ss_pred             ceeeeec----cccccceEEEEEcCCCCeEEEE
Q 012712          140 GVETKLL----GKHQGRAHKLAIEPGSPHVFYT  168 (458)
Q Consensus       140 ~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s  168 (458)
                      .......    ...........|+|++..++++
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            4332111    1122345678999999544443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.60  E-value=3.9e-05  Score=65.78  Aligned_cols=158  Identities=15%  Similarity=0.130  Sum_probs=91.4

Q ss_pred             CCCCCeEEEeeCCC-----------cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCE
Q 012712            7 NNNNKRARTSVDKA-----------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDI   75 (458)
Q Consensus         7 ~~~~~~l~~~~~d~-----------~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~   75 (458)
                      +.++++++.|+.+.           .+.+||..+++....                  ......|.......++.++|++
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------------------~~~~~~~~~~~~~~~~~~~g~i   89 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------------------TVTVTKHDMFCPGISMDGNGQI   89 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------------------EEEECSCCCSSCEEEECTTSCE
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec------------------CCCCCCcccceeEEEEecCCcE
Confidence            45677777777421           267899988876522                  0011233333446678899999


Q ss_pred             EEEecCC-CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------CcEEEeecccccceeeeecc-
Q 012712           76 LISGSDD-RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVETKLLG-  147 (458)
Q Consensus        76 l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~-  147 (458)
                      ++.|+.+ ..+.+||..+..-...-.......-...+..+  |++.++.++.+      ..+.+||..+.......... 
T Consensus        90 ~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~--dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~  167 (387)
T d1k3ia3          90 VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV  167 (387)
T ss_dssp             EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred             EEeecCCCcceeEecCccCcccccccccccccccceeeec--CCceeeeccccccccccceeeeecCCCCceeecCCCcc
Confidence            9998765 58999998876543221111122234566677  89999988753      35889998776532210000 


Q ss_pred             ------cccc-----ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc
Q 012712          148 ------KHQG-----RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA  185 (458)
Q Consensus       148 ------~~~~-----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  185 (458)
                            .+..     .-..+...+++ .+++.++..+.+..++..+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         168 NPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             GGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTCEE
T ss_pred             cccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccCcE
Confidence                  0000     01112223445 5666677777777777776643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.55  E-value=4.4e-05  Score=68.67  Aligned_cols=79  Identities=10%  Similarity=-0.091  Sum_probs=50.9

Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccccccc--EEEEEEecCC-cE
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQ--VCFSIYSADY-WW  440 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--v~~~~~s~d~-~~  440 (458)
                      .|.|.-+|+.+++.+-+...-. +..+-..+-.+.++++++.||.++.+|.++++.+-...-...  -.-+.|..|| +|
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            3688999999999886654221 111111222466778899999999999999988732222222  2236677899 56


Q ss_pred             EEe
Q 012712          441 SKS  443 (458)
Q Consensus       441 l~s  443 (458)
                      ++.
T Consensus       522 i~v  524 (571)
T d2ad6a1         522 IGS  524 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.39  E-value=0.00044  Score=62.27  Aligned_cols=78  Identities=10%  Similarity=-0.039  Sum_probs=50.6

Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccc--cEEEEEEecCC-cEE
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIE--QVCFSIYSADY-WWS  441 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~v~~~~~s~d~-~~l  441 (458)
                      |.|.-||+.+++.+-.... ..+..+-..+-.+.+++.|+.||.++.+|.++++.+-...-..  .-.-+.|..|| +|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            6899999999988765542 2222222233457788889999999999999998872221111  12235577799 566


Q ss_pred             Ee
Q 012712          442 KS  443 (458)
Q Consensus       442 ~s  443 (458)
                      +.
T Consensus       532 av  533 (596)
T d1w6sa_         532 AI  533 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.35  E-value=0.00028  Score=63.19  Aligned_cols=80  Identities=4%  Similarity=-0.008  Sum_probs=51.4

Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccE--EEEEEecCC-cE
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQV--CFSIYSADY-WW  440 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v--~~~~~s~d~-~~  440 (458)
                      .|.+.-+|+.+++.+-...... +...-..+-.+.++++|+.||.++.+|.++++.+-...-...+  .-+.|..|| +|
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678899999999887665321 2222122335678888999999999999999876221111111  225677889 56


Q ss_pred             EEee
Q 012712          441 SKSQ  444 (458)
Q Consensus       441 l~s~  444 (458)
                      ++..
T Consensus       516 v~v~  519 (560)
T d1kv9a2         516 VAIM  519 (560)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.32  E-value=0.00012  Score=62.52  Aligned_cols=111  Identities=13%  Similarity=0.140  Sum_probs=68.3

Q ss_pred             CCeEEEEEcCC-----C------cEEEeecccccceeeee-ccccccceEEEEEcCCCCeEEEEecCC-CeEEEEeCCCC
Q 012712          117 DDRSIVTCAAD-----G------QVRHAQILERGGVETKL-LGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHFDLRTG  183 (458)
Q Consensus       117 ~~~~l~s~~~d-----g------~i~vw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~  183 (458)
                      +++.++.|+.+     +      .+.+||..++....... ...+.......++.+++ .+++.|+.+ ..+.+||..+.
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGT
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecCCCcceeEecCccC
Confidence            77888877742     1      26789998876533211 12233334566788998 677777655 57999998876


Q ss_pred             CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC------CeEEEEecCCCcc
Q 012712          184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------EYTRLYDIRKYKW  238 (458)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~  238 (458)
                      .-...-...   .      ...-.+++..++ +.+++.|+.+      ..+.+||..+.+.
T Consensus       109 ~w~~~~~~~---~------~r~~~~~~~~~d-G~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         109 SWIPGPDMQ---V------ARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEECCCCS---S------CCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ccccccccc---c------cccccceeeecC-CceeeeccccccccccceeeeecCCCCce
Confidence            543221111   0      011234566676 6788877643      3589999988764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.18  E-value=0.00069  Score=60.83  Aligned_cols=78  Identities=13%  Similarity=0.110  Sum_probs=50.7

Q ss_pred             CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccE--EEEEEecCCc-EE
Q 012712          365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQV--CFSIYSADYW-WS  441 (458)
Q Consensus       365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v--~~~~~s~d~~-~l  441 (458)
                      |.+.-||+.+++.+-+.+... +...=..+-.+.++++|+.||.++.+|.++++.+-...-...+  .-+.|..||+ |+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578899999999887765432 1111122336778888999999999999999876222111221  1255677884 55


Q ss_pred             Ee
Q 012712          442 KS  443 (458)
Q Consensus       442 ~s  443 (458)
                      +.
T Consensus       536 ~v  537 (573)
T d1kb0a2         536 SV  537 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=0.00092  Score=53.11  Aligned_cols=236  Identities=10%  Similarity=0.042  Sum_probs=134.6

Q ss_pred             eEEEEEcCCCcEEEeecccccce---eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712          119 RSIVTCAADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID  195 (458)
Q Consensus       119 ~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  195 (458)
                      .+|+.+.. +.|+-.++......   ....+..+...+..++|++....++.+-..++.|+..++...........    
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----   76 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----   76 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe----
Confidence            34444443 45666666433211   11123334556788999988766766667788899999876654433321    


Q ss_pred             CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712          196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL  275 (458)
Q Consensus       196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  275 (458)
                            ....+.+++++.-++++.++-...+.|.+.++.....               ..+.......+..+++.|...+
T Consensus        77 ------~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~---------------~~l~~~~l~~p~~l~vdp~~g~  135 (263)
T d1npea_          77 ------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---------------RVLFDTGLVNPRGIVTDPVRGN  135 (263)
T ss_dssp             ------TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------EEEECSSCSSEEEEEEETTTTE
T ss_pred             ------ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE---------------EEEecccccCCcEEEEecccCc
Confidence                  1124678888876555666667778999999875431               1122222346789999987766


Q ss_pred             EEEecC--CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712          276 LVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP  353 (458)
Q Consensus       276 l~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~  353 (458)
                      +.-...  +..+++.....                                     +.....+.... -....++++ ++
T Consensus       136 ly~t~~~~~~~~I~r~~~d-------------------------------------G~~~~~i~~~~-~~~P~glai-D~  176 (263)
T d1npea_         136 LYWTDWNRDNPKIETSHMD-------------------------------------GTNRRILAQDN-LGLPNGLTF-DA  176 (263)
T ss_dssp             EEEEECCSSSCEEEEEETT-------------------------------------SCCCEEEECTT-CSCEEEEEE-ET
T ss_pred             EEEeecCCCCcEEEEecCC-------------------------------------CCCceeeeeec-ccccceEEE-ee
Confidence            554432  23344433221                                     11111111111 112467887 87


Q ss_pred             CCcEEEEe-cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc
Q 012712          354 KCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT  421 (458)
Q Consensus       354 ~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~  421 (458)
                      .++.|+.+ ...+.|...++........+.+-. ...+|++. ++.+..+-...+.|...+..+++...
T Consensus       177 ~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccce
Confidence            77777654 456889999986544433444433 34577775 33444444456788888888776543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=0.0017  Score=54.02  Aligned_cols=271  Identities=11%  Similarity=0.061  Sum_probs=141.0

Q ss_pred             EEEeeCCCcEEEEEcccccccccc--cccccc---cccc------------ceEEe-eee--eEe-ecCCCceEEEEEec
Q 012712           13 ARTSVDKALVDVWLRELGQLSTRN--FALRRR---ASED------------LVLRL-GIY--AKL-DKHRGCVNTVSFNT   71 (458)
Q Consensus        13 l~~~~~d~~i~iw~~~~g~~~~~~--~~~~~~---~~~~------------~~~~~-~~~--~~~-~~h~~~v~~~~~s~   71 (458)
                      +.+|+..|.|+|+-+-+++.+.++  |.+...   +-.+            ....+ ...  ..+ .|-..- -.+++..
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH-P~~S~Td   94 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH-VHMSFTE   94 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC-EEEEEET
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC-CcccccC
Confidence            678999999999999999988772  333110   0000            00000 000  001 111111 1566654


Q ss_pred             ---CCCEEEEec-CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------------------Cc
Q 012712           72 ---DGDILISGS-DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------------------GQ  129 (458)
Q Consensus        72 ---~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------------------g~  129 (458)
                         ||++|.... .+.+|-+-|+++.+....+.......+..++..+.....+++..+..                  +.
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence               788887665 57899999999988755443344556677776542255566665552                  23


Q ss_pred             EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--C------------eEEEEeCCC-------CC----
Q 012712          130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--G------------LVQHFDLRT-------GA----  184 (458)
Q Consensus       130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g------------~i~iwd~~~-------~~----  184 (458)
                      +.+.|..+.+........   .....+.++|+|+..++++...  +            .+.+++...       ++    
T Consensus       175 ~t~ID~~tm~V~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEEEecCCceEEEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            566777766655443333   3456789999995444443211  1            233333210       00    


Q ss_pred             -ccceeeecccCCCCc---ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712          185 -ATELFTCRPIDDRRN---YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE  260 (458)
Q Consensus       185 -~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (458)
                       -+..+.........-   -........+.++||+...++++..+.++.++|++.......-    ..............
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~----~~~~~~~~~~e~el  327 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE----NADPRSAVVAEPEL  327 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS----CC-GGGGEEECCBC
T ss_pred             CCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc----cCCccccEEeeccc
Confidence             000010000000000   0012235678999996666667778999999999754321000    00000000000111


Q ss_pred             ccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712          261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDM  291 (458)
Q Consensus       261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~  291 (458)
                      .-....-+|+..|....+.- +..|.-|++..
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecch
Confidence            23345668888885444444 66899999854

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=0.0017  Score=51.52  Aligned_cols=241  Identities=12%  Similarity=0.058  Sum_probs=137.5

Q ss_pred             CeEEEEECCCccee----eeeccCCCcceeEEEEccCCCCeEEEE-EcCCCcEEEeecccccceeeeeccccccceEEEE
Q 012712           83 RRVILWDWKTERVK----LSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADGQVRHAQILERGGVETKLLGKHQGRAHKLA  157 (458)
Q Consensus        83 ~~i~iwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~  157 (458)
                      +.|+-.+++.....    ...+..+...+.+++|.+  ..+.|.- -..++.|+..++........  +......+..++
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~--~~~~iywsd~~~~~I~~~~l~g~~~~~v--~~~~~~~p~~iA   85 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTTI--IRQDLGSPEGIA   85 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEEE--ECTTCCCEEEEE
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEe--CCCEEEEEECCCCeEEEEEcccCCcEEE--EEeccccccEEE
Confidence            46666666543211    111223445677899987  5555544 45567788888765443322  332335678899


Q ss_pred             EcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eEEEEecCC
Q 012712          158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRK  235 (458)
Q Consensus       158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~  235 (458)
                      +...+.++.++-...+.|.+.++...........          ....+..++++|..+.++.+-...+  .|.--++..
T Consensus        86 vD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~----------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG  155 (263)
T d1npea_          86 LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT----------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             EeccCCeEEEeccCCCEEEEEecCCceEEEEecc----------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC
Confidence            9876656666777788999999886654332211          1124788999998665555543323  344444443


Q ss_pred             CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccC
Q 012712          236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG  313 (458)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (458)
                      ...               ..+....-.....+++.+.++.|.-..  .+.|...+++..                     
T Consensus       156 ~~~---------------~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---------------------  199 (263)
T d1npea_         156 TNR---------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---------------------  199 (263)
T ss_dssp             CCC---------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---------------------
T ss_pred             CCc---------------eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---------------------
Confidence            221               112222234567899988776665443  446888887642                     


Q ss_pred             CCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeEEE
Q 012712          314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIE  392 (458)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~  392 (458)
                                       .....+.+...   ..++++ . ++.+..+-...+.|...|..+++.+..+..+ ......++
T Consensus       200 -----------------~~~~v~~~~~~---P~~lav-~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~  257 (263)
T d1npea_         200 -----------------GRRKVLEGLQY---PFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGIT  257 (263)
T ss_dssp             -----------------EEEEEEECCCS---EEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEE
T ss_pred             -----------------CeEEEECCCCC---cEEEEE-E-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEE
Confidence                             11122222222   246766 3 3333344446688999999889887766433 23455665


Q ss_pred             ecC
Q 012712          393 PHP  395 (458)
Q Consensus       393 ~s~  395 (458)
                      ..+
T Consensus       258 v~~  260 (263)
T d1npea_         258 IAL  260 (263)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.97  E-value=0.0019  Score=53.79  Aligned_cols=68  Identities=10%  Similarity=0.076  Sum_probs=46.3

Q ss_pred             eeEEEecCCCCeEEEee-cCCcEEEecCCccccc------------ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          388 VNCIEPHPHSTVLASSG-IESDIKILTPNAADRA------------TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       388 v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~------------~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                      ...+.++|||+++++++ .+.++.++|++.-...            ......-.-...+|..+|.--.|---|.+|.-|+
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence            46789999999887654 5899999998632110            1111222356788999885444556888999998


Q ss_pred             E
Q 012712          455 W  455 (458)
Q Consensus       455 ~  455 (458)
                      +
T Consensus       357 ~  357 (459)
T d1fwxa2         357 I  357 (459)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=0.0027  Score=49.86  Aligned_cols=262  Identities=11%  Similarity=0.123  Sum_probs=152.4

Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG  161 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (458)
                      ...|.|-|+.++..+.+....    .-+.-.+|  ..+.||.-+ ...+.++|+++.+.+....+.   .+|.--.|-.+
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP--~~~IiALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis~  113 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNP--ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISL  113 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC----CSEEEECS--SSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEESSS
T ss_pred             CceEEEEECCCCCcceecccc----hhhhhcCC--CCcEEEEec-CCeEEEEehhHhhhhceEEcC---CCcEEEEecCC
Confidence            457888998876644333222    22344678  778887766 468999999998877664443   35655667665


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-------CCCeEEEEec
Q 012712          162 SPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-------SDEYTRLYDI  233 (458)
Q Consensus       162 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~i~d~  233 (458)
                      .  .|+..+ +..|+-|+++... +.+.+..+...      ....|..-..+++ .++++..+       -.|.+.+|..
T Consensus       114 ~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L------~~~QIInY~~d~~-~kW~~l~GI~~~~~~i~G~mQLYS~  183 (327)
T d1utca2         114 N--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSV  183 (327)
T ss_dssp             S--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------TTCEEEEEEECTT-SCEEEEEEEEEETTEEEEEEEEEET
T ss_pred             C--EEEEEc-CCceEEEcccCCCCchhhhhhcccc------cCceEEEEEECCC-CCEEEEEeEecCCCceeEEEEEEEe
Confidence            5  344433 3579999996433 33444322211      2345777788887 55655432       2367888988


Q ss_pred             CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC---cEEEEecC----CcEEEEEccCCCC-CCCCCCCCccc
Q 012712          234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS---ELLVSYND----EFIYLFTQDMGLG-PNPPPSSPVST  305 (458)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~----~~i~i~~~~~~~~-~~~~~~~~~~~  305 (458)
                      +...                .....+|.+....+.+..+.   .+++.+..    +++.+.++..... ..++.      
T Consensus       184 er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~------  241 (327)
T d1utca2         184 DRKV----------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP------  241 (327)
T ss_dssp             TTTE----------------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC------
T ss_pred             ccCc----------------CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc------
Confidence            7653                23444555444444443222   24444332    3688888876321 11111      


Q ss_pred             cccccccCCCCccccCCCCCCcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC
Q 012712          306 RSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD  384 (458)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  384 (458)
                                              .+....+ ........-.++.. ++.-..++.-+.-|.|++||++++.++..-+-.
T Consensus       242 ------------------------kk~vdi~fppea~~DFPvamqv-s~kygiiyviTK~G~i~lyDleTgt~i~~nRIs  296 (327)
T d1utca2         242 ------------------------KKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS  296 (327)
T ss_dssp             ------------------------CEEEECCCCTTCTTCCEEEEEE-ETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             ------------------------ceeEEEECCccccCCcEEEEEe-eccCCEEEEEecCcEEEEEEcccccEEEEeecC
Confidence                                    0011111 11111112456666 777788888899999999999999999877766


Q ss_pred             CceeeEEEecCCCCeEEEeecCCcEE
Q 012712          385 RHVVNCIEPHPHSTVLASSGIESDIK  410 (458)
Q Consensus       385 ~~~v~~~~~s~~~~~l~s~~~d~~i~  410 (458)
                      ...|..-+-+.+..=++....+|.|.
T Consensus       297 ~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         297 GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CCceEEeccCCCCceEEEECCCCeEE
Confidence            66666555444444444455566553

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.0032  Score=50.04  Aligned_cols=242  Identities=12%  Similarity=0.061  Sum_probs=135.1

Q ss_pred             EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEE-cCCCcEEEeecccccc--eeeeecccccc
Q 012712           75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGG--VETKLLGKHQG  151 (458)
Q Consensus        75 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~~~--~~~~~~~~~~~  151 (458)
                      +|+.+.. ..|+-.++++.......  .....+.++.|.+  ..+.|.-. ...+.|.-.++.....  .....+.....
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~--~~~~~~~~id~d~--~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~   77 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ   77 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEE--CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred             EEEEECC-CeEEEEECCCCcceeee--CCCCceEEEEEEe--CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence            3444433 34888888765543332  3445677899988  66665544 3456676666543221  11111222334


Q ss_pred             ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe-cCCCeEEE
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA-GSDEYTRL  230 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i  230 (458)
                      .+..+++.+.+.++..+-...+.|.+.++...........          ....+..++++|..+.++++- +..+.|..
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~----------~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC----------TTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC----------CCCCcceEEEEcccCeEEEeccCCCcceeE
Confidence            5678999887767777777788999999886654333321          122468899998755555553 23456666


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE  308 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~  308 (458)
                      .++.....               ..+....-.....+++.+.+..|.-+.  .+.|...++....               
T Consensus       148 ~~~dGs~~---------------~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~---------------  197 (266)
T d1ijqa1         148 GGLNGVDI---------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---------------  197 (266)
T ss_dssp             EETTSCCE---------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------------
T ss_pred             eccCCCce---------------ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC---------------
Confidence            66654321               112222234568899998776655544  4468888876421               


Q ss_pred             ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc
Q 012712          309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH  386 (458)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  386 (458)
                                             ...............++++ . ++....+-..++.|+..+..+++....+.....
T Consensus       198 -----------------------~~~~~~~~~~~~~p~~lav-~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~  250 (266)
T d1ijqa1         198 -----------------------RKTILEDEKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLL  250 (266)
T ss_dssp             -----------------------CEEEEECTTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCS
T ss_pred             -----------------------EEEEEeCCCcccccEEEEE-E-CCEEEEEECCCCeEEEEECCCCcceEEEEcCCC
Confidence                                   1111111111112456666 3 333444444668888888877776666654433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.79  E-value=0.011  Score=52.90  Aligned_cols=79  Identities=5%  Similarity=-0.096  Sum_probs=53.4

Q ss_pred             CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccccc--ccEEEEEEecCC-cE
Q 012712          364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNI--EQVCFSIYSADY-WW  440 (458)
Q Consensus       364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~v~~~~~s~d~-~~  440 (458)
                      .|.|.-+|+.+|+.+-....+. ++..-..+..+.++++|+.||.++.+|.++|+.+-...-.  ..-.-+.|..|| +|
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4788999999999887776432 2332223446778888999999999999999887221111  112236778899 56


Q ss_pred             EEe
Q 012712          441 SKS  443 (458)
Q Consensus       441 l~s  443 (458)
                      ++.
T Consensus       544 v~i  546 (582)
T d1flga_         544 LGV  546 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.76  E-value=0.0054  Score=54.76  Aligned_cols=150  Identities=9%  Similarity=0.016  Sum_probs=81.2

Q ss_pred             cccccccccccccceEEeeeeeEeec-CCCceEEEEEec---CCCEEEEecCCCeEEEEEC-CCcceeeeeccCCCcc--
Q 012712           34 TRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNT---DGDILISGSDDRRVILWDW-KTERVKLSFHSGHNDN--  106 (458)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~--  106 (458)
                      ..+|+++..-+.+.+.+|++.-.+.- -...+   .-+|   +|...++.+.++.|.-.|. ++|+.+.++.......  
T Consensus        23 ~~r~s~l~~I~~~Nv~~L~~aW~~~~g~~~~~---~~tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~   99 (571)
T d2ad6a1          23 SQHNSPLAQINKSNVKNVKAAWSFSTGVLNGH---EGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTK   99 (571)
T ss_dssp             CCCEECCCSSCTTTGGGCEEEEEEECSCCSCC---CSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGG
T ss_pred             cCCCCChhhcCHhHhhhceEEEEEeCCCCCCc---ccCCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccc
Confidence            34556655556666666666666542 11111   1122   4554444444677888887 4688877652111111  


Q ss_pred             --------eeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc--cceEEEEEcCCCCeEEEEec-----C
Q 012712          107 --------VFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ--GRAHKLAIEPGSPHVFYTCG-----E  171 (458)
Q Consensus       107 --------i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~-----~  171 (458)
                              -..+++.    +..|+.++.||.+.-.|.++++......+....  ..++.--.-.++ .+++..+     .
T Consensus       100 ~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~  174 (571)
T d2ad6a1         100 AVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGV  174 (571)
T ss_dssp             GGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTC
T ss_pred             cccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccc
Confidence                    0223443    245677788899888899998876543332111  111111111123 3333322     3


Q ss_pred             CCeEEEEeCCCCCccceeee
Q 012712          172 DGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       172 dg~i~iwd~~~~~~~~~~~~  191 (458)
                      +|.|+-+|+++++.+..+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEES
T ss_pred             cCcEEEEECCCCcEEEEEec
Confidence            67899999999998776553

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.013  Score=46.44  Aligned_cols=224  Identities=12%  Similarity=0.037  Sum_probs=120.1

Q ss_pred             eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712          164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD  243 (458)
Q Consensus       164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  243 (458)
                      .+|++..  ..|+..++.+.+......           ....+.+++|++..+.++.+=...+.|...++........  
T Consensus         3 fLl~s~~--~~I~~~~l~~~~~~~~~~-----------~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~--   67 (266)
T d1ijqa1           3 YLFFTNR--HEVRKMTLDRSEYTSLIP-----------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--   67 (266)
T ss_dssp             EEEEECB--SSEEEEETTSCCCEEEEC-----------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------
T ss_pred             EEEEECC--CeEEEEECCCCcceeeeC-----------CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc--
Confidence            4455544  358888988765443332           2224678999987544555545666777666643221100  


Q ss_pred             CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712          244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS  321 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (458)
                               ...........+..+++.+.+..|....  .+.|.+.+++...                            
T Consensus        68 ---------~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~----------------------------  110 (266)
T d1ijqa1          68 ---------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------------------------  110 (266)
T ss_dssp             ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS----------------------------
T ss_pred             ---------eEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCce----------------------------
Confidence                     1112222234567889887666555443  4478888876521                            


Q ss_pred             CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe--cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCe
Q 012712          322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG--SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTV  399 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  399 (458)
                                ....+.....  ....++. +|...+|+..  +..+.|...++............-..+..+++.+.++.
T Consensus       111 ----------~~~~~~~~~~--~P~~l~v-d~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~  177 (266)
T d1ijqa1         111 ----------RKTLFRENGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR  177 (266)
T ss_dssp             ----------EEEEEECTTC--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred             ----------EEEEEcCCCC--CcceEEE-EcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccE
Confidence                      1111222111  2567777 7765555543  33457777777433333333333356789999988776


Q ss_pred             EEEe-ecCCcEEEecCCccccccc---ccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712          400 LASS-GIESDIKILTPNAADRATL---PTNIEQVCFSIYSADYWWSKSQNFSCSILLF  453 (458)
Q Consensus       400 l~s~-~~d~~i~iw~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w  453 (458)
                      |.-+ ...+.|...++.+.....+   ........+++... +....+-..++.|.-.
T Consensus       178 lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~  234 (266)
T d1ijqa1         178 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA  234 (266)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             EEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeEEEE
Confidence            6655 4567888888876544332   22222355666652 3333333344555443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.50  E-value=0.031  Score=50.00  Aligned_cols=152  Identities=13%  Similarity=0.008  Sum_probs=83.5

Q ss_pred             cccccccccccccceEEeeeeeEeecCC-CceEEEEEec---CCCEEEEecCCCeEEEEEC-CCcceeeeeccCCC----
Q 012712           34 TRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNT---DGDILISGSDDRRVILWDW-KTERVKLSFHSGHN----  104 (458)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~----  104 (458)
                      .++|+++..-..+.+.+|++.-.+.... +.+   .-.|   +|.+.++++.++.+...|. ++|+.+.++.....    
T Consensus        23 ~~r~s~l~qI~~~Nv~~L~~aW~~~~~~~~~~---~~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~   99 (596)
T d1w6sa_          23 SNNFSDLKQINKGNVKQLRPAWTFSTGLLNGH---EGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAAR   99 (596)
T ss_dssp             CCCEECCCSSCTTTGGGEEEEEEEECSCCSCC---CSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGG
T ss_pred             CCccCchhhcCHhHhhhceEEEEEECCCCCCc---eeCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccc
Confidence            3455665555666666676666654311 111   1112   4555555555566777776 57887766521110    


Q ss_pred             ------cceeEEEEccC--CCCeEEEEEcCCCcEEEeecccccceeeeecccccc--ceEE-EEEcCCCCeEEEEecC--
Q 012712          105 ------DNVFQAKIMPF--TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG--RAHK-LAIEPGSPHVFYTCGE--  171 (458)
Q Consensus       105 ------~~i~~~~~~~~--~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~~l~s~~~--  171 (458)
                            ..-+.+++.+.  ....+++.++.|+.|.-.|.++++.+..........  .++. -.+. ++  .++.+..  
T Consensus       100 ~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~--~vivg~~~~  176 (596)
T d1w6sa_         100 AVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD--KVIIGSSGA  176 (596)
T ss_dssp             GGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT--EEEECCBCG
T ss_pred             cccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-CC--eEEEeeccc
Confidence                  01134555441  123468888889999999999988776532221111  1111 0111 22  3455432  


Q ss_pred             ----CCeEEEEeCCCCCccceeee
Q 012712          172 ----DGLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       172 ----dg~i~iwd~~~~~~~~~~~~  191 (458)
                          .|.|+-+|+++++.+..+..
T Consensus       177 e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         177 ELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             GGTCCCEEEEEETTTCCEEEEEES
T ss_pred             cccccCceEEEECCCCcEEEEeec
Confidence                48999999999998876653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.014  Score=45.87  Aligned_cols=252  Identities=12%  Similarity=0.070  Sum_probs=150.8

Q ss_pred             CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712          127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL  206 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v  206 (458)
                      ...+.+.|+.++..+.++...     ..+.-.+|.. +.++.-+ ...+.++|+++.+.++.+...           .+|
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~-----AdsAIMhP~~-~IiALra-g~~LQiFnletK~klks~~~~-----------e~V  105 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMT-----------DDV  105 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC-----CSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEECS-----------SCC
T ss_pred             CceEEEEECCCCCcceecccc-----hhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhhceEEcC-----------CCc
Confidence            357888898877655544332     3456678987 5555544 568999999999888777643           246


Q ss_pred             EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec----C-
Q 012712          207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN----D-  281 (458)
Q Consensus       207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~-  281 (458)
                      .--.|-.+  +.|+..+. ..|+-|++....        .|...+......  ....|..-..+++.++++..+    + 
T Consensus       106 vfWkWis~--~~L~lVT~-taVYHW~~~g~s--------~P~k~fdR~~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~  172 (327)
T d1utca2         106 TFWKWISL--NTVALVTD-NAVYHWSMEGES--------QPVKMFDRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQN  172 (327)
T ss_dssp             CEEEESSS--SEEEEECS-SEEEEEESSSSC--------CCEEEEECCGGG--TTCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             EEEEecCC--CEEEEEcC-CceEEEcccCCC--------Cchhhhhhcccc--cCceEEEEEECCCCCEEEEEeEecCCC
Confidence            56667654  45555543 469999985432        122222222222  246788888999999876543    2 


Q ss_pred             ---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC---C
Q 012712          282 ---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK---C  355 (458)
Q Consensus       282 ---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~---~  355 (458)
                         |.+.+|..+.                                       ...+.+.||...  ...+.. .-+   .
T Consensus       173 ~i~G~mQLYS~er---------------------------------------~~sQ~ieGhaa~--F~~~~~-~g~~~~~  210 (327)
T d1utca2         173 RVVGAMQLYSVDR---------------------------------------KVSQPIEGHAAS--FAQFKM-EGNAEES  210 (327)
T ss_dssp             EEEEEEEEEETTT---------------------------------------TEEEEECCSEEE--EEEECC-TTCSSCE
T ss_pred             ceeEEEEEEEecc---------------------------------------CcCccccceeee--eEEEEc-CCCCCCc
Confidence               2478888764                                       344566666542  122211 100   0


Q ss_pred             cEEEE---ecCCCeEEEEEecCCe--------EEEEee----cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712          356 EYVVS---GSDCGRIFIWKKKGGE--------LIRVIE----ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA  420 (458)
Q Consensus       356 ~~l~~---~~~dg~i~iwd~~~~~--------~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~  420 (458)
                      +.++.   +...++++|.++....        ....+.    .-.+-..++..|+....+..-+.-|.|++||++++.++
T Consensus       211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence            12222   2233788999885421        111121    12344678888988888888899999999999999876


Q ss_pred             ccccc-cccEEEEEEecCCcEEEeeecCCceE
Q 012712          421 TLPTN-IEQVCFSIYSADYWWSKSQNFSCSIL  451 (458)
Q Consensus       421 ~~~~~-~~~v~~~~~s~d~~~l~s~~~d~~i~  451 (458)
                      ....- .+.|...+-..+..=++....+|.|.
T Consensus       291 ~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         291 YMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            44332 33455444444544444556777654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.47  E-value=0.024  Score=50.55  Aligned_cols=149  Identities=15%  Similarity=0.097  Sum_probs=80.5

Q ss_pred             ccccccccccccceEEeeeeeEeecCC-CceEE-EEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCC--------
Q 012712           35 RNFALRRRASEDLVLRLGIYAKLDKHR-GCVNT-VSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN--------  104 (458)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~-~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------  104 (458)
                      .+|+++..-..+.+.+|++.-++.-.. +.+.+ -.+. +| .|..++.++.|.-+|.++|+.+.++.....        
T Consensus        39 ~r~s~l~~I~~~nv~~L~~aW~~~~~~~~~~~stPiv~-~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~  116 (573)
T d1kb0a2          39 TRYSRLDQINAANVKDLGLAWSYNLESTRGVEATPVVV-DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGC  116 (573)
T ss_dssp             CCEECCCSSCTTTGGGEEEEEEEECCCCSCCCCCCEEE-TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSS
T ss_pred             CccCchhhcChhHhhcceEEEEEECCCCCCcEECCEEE-CC-EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccc
Confidence            345555555555666666666554322 22211 0111 44 566677788899999999998877521110        


Q ss_pred             -cce-eEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC---CCCeEEEEecC------CC
Q 012712          105 -DNV-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP---GSPHVFYTCGE------DG  173 (458)
Q Consensus       105 -~~i-~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~------dg  173 (458)
                       ..+ ..+.+.   + ..++.+..|+.+.-.|..+++.+.......+...-..+.-.|   ++  .++.++.      .|
T Consensus       117 ~~~~~~g~~~~---~-~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~--~vivg~~~~~~~~~G  190 (573)
T d1kb0a2         117 CDVVNRGVALW---K-GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRG  190 (573)
T ss_dssp             SCSCCCCCEEE---T-TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBC
T ss_pred             cccccccceEE---C-CcEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEec--cEEEeeccccccccc
Confidence             011 122332   2 346666777888888888887765433321211100011111   22  3444432      46


Q ss_pred             eEEEEeCCCCCccceeee
Q 012712          174 LVQHFDLRTGAATELFTC  191 (458)
Q Consensus       174 ~i~iwd~~~~~~~~~~~~  191 (458)
                      .|+.+|.++++.+..+..
T Consensus       191 ~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         191 YITAYDAETGERKWRWFS  208 (573)
T ss_dssp             EEEEEETTTCCEEEEEES
T ss_pred             eEEEEecCCccceeeeee
Confidence            899999999998877654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.24  E-value=0.051  Score=48.19  Aligned_cols=148  Identities=16%  Similarity=0.151  Sum_probs=78.1

Q ss_pred             cccccccccccceEEeeeeeEeecCC-CceEE-EEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCC---------
Q 012712           36 NFALRRRASEDLVLRLGIYAKLDKHR-GCVNT-VSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN---------  104 (458)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~-~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------  104 (458)
                      +|+++..-..+.+.+|++.-.+..-. ..+.+ -.+ -+| .|..++.++.|.-.|.++|+.+.++.....         
T Consensus        29 r~s~~~~I~~~nv~~L~~aW~~~~~~~~~~~stPiv-~~g-~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~  106 (560)
T d1kv9a2          29 RFSPLKQIDASNVRSLGLAWYMDLDNTRGLEATPLF-HDG-VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCC  106 (560)
T ss_dssp             CEECCCSSCTTTGGGEEEEEEEECSCCSCCCCCCEE-ETT-EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTT
T ss_pred             ccCchhhcChhHhhcceEEEEEECCCCCCcEeCCEE-ECC-EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccc
Confidence            34444433444445555555554221 11111 001 144 455566778888889999998877521100         


Q ss_pred             cce-eEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC---CCCeEEEEec------CCCe
Q 012712          105 DNV-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP---GSPHVFYTCG------EDGL  174 (458)
Q Consensus       105 ~~i-~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~------~dg~  174 (458)
                      ..+ ..++.    .+..++.+..++.+.-.|..+++.+.......+.... .+.-.|   ++  .++.+.      ..|.
T Consensus       107 ~~~~~~~~~----~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~-~~~~~p~v~~~--~vivg~~~~~~~~~G~  179 (560)
T d1kv9a2         107 DAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPY-SITGAPRVVKG--KVIIGNGGAEYGVRGF  179 (560)
T ss_dssp             CSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSC-BCCSCCEEETT--EEEECCBCTTTCCBCE
T ss_pred             cccccCcce----eCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccce-eeeeeeeeecC--cccccccceeccccce
Confidence            000 11222    2346777788888888888888776553332221110 011111   22  234432      2367


Q ss_pred             EEEEeCCCCCccceeeec
Q 012712          175 VQHFDLRTGAATELFTCR  192 (458)
Q Consensus       175 i~iwd~~~~~~~~~~~~~  192 (458)
                      |.-+|.++++.+..+...
T Consensus       180 v~a~D~~TG~~~W~~~t~  197 (560)
T d1kv9a2         180 VSAYDADTGKLAWRFYTV  197 (560)
T ss_dssp             EEEEETTTCCEEEEEESS
T ss_pred             EEEEECCCceEEeeeeec
Confidence            999999999988777543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.07  E-value=0.071  Score=45.48  Aligned_cols=107  Identities=7%  Similarity=-0.016  Sum_probs=65.8

Q ss_pred             cCCCceEEEEEecCCCEEEEe----c-CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------
Q 012712           59 KHRGCVNTVSFNTDGDILISG----S-DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------  127 (458)
Q Consensus        59 ~h~~~v~~~~~s~~~~~l~s~----~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------  127 (458)
                      ++.-.+...++|||++++|.+    | ....|+++|+.+++.+.....  ......++|++  |++.|+....+      
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~--D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTH--DGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECT--TSSEEEEEECCCCSSCC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcC--CCCEEEEEEeccccCcc
Confidence            444445667889999998843    2 235899999999987643321  12235689999  88877654322      


Q ss_pred             ----------CcEEEeecccccceeeeeccccc--cceEEEEEcCCCCeEEEEe
Q 012712          128 ----------GQVRHAQILERGGVETKLLGKHQ--GRAHKLAIEPGSPHVFYTC  169 (458)
Q Consensus       128 ----------g~i~vw~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~  169 (458)
                                ..|..+.+.+........+....  ..+..+..++++..+++..
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence                      25777777665443222233322  3455677788885555443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.80  E-value=0.16  Score=45.20  Aligned_cols=153  Identities=14%  Similarity=0.068  Sum_probs=81.3

Q ss_pred             ccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEEecCCCeEEEEECCCcceeeeeccCCC-------c
Q 012712           35 RNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDRRVILWDWKTERVKLSFHSGHN-------D  105 (458)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~  105 (458)
                      ++|+++-.-+.+.+.+|++.-.+......-....-.|  .+..|..++.++.|.-.|.++|+.+.++.....       .
T Consensus        28 ~r~s~l~qI~~~Nv~~L~~aW~~~~g~~~~~~~~stPiv~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~  107 (582)
T d1flga_          28 QRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCD  107 (582)
T ss_dssp             CCEECCCSSCTTTGGGCEEEEEEECCTTCCSCCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSC
T ss_pred             CccCchhhcCHhHhhhceEEEEEeCCCCCCCCcccCCEEECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccc
Confidence            3555555556666666666665542111000000111  134566677788898899999998877521110       0


Q ss_pred             ce-eEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc-----eEEEEEcC-CCCeEEEEe------cCC
Q 012712          106 NV-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR-----AHKLAIEP-GSPHVFYTC------GED  172 (458)
Q Consensus       106 ~i-~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~-~~~~~l~s~------~~d  172 (458)
                      .+ ..+++.    +..++.++.++.+.-.|..+++.+....+..+...     ...+.-.. ....+++.+      +..
T Consensus       108 ~~~rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~  183 (582)
T d1flga_         108 VVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVV  183 (582)
T ss_dssp             SCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCB
T ss_pred             cccCCceEe----CCceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccc
Confidence            11 123332    34566677888888889888887654434322211     00111111 122233332      234


Q ss_pred             CeEEEEeCCCCCccceeee
Q 012712          173 GLVQHFDLRTGAATELFTC  191 (458)
Q Consensus       173 g~i~iwd~~~~~~~~~~~~  191 (458)
                      +.|.-+|.++++.+..+..
T Consensus       184 g~v~a~d~~tG~~~W~~~~  202 (582)
T d1flga_         184 GRLFARDPDTGEEIWMRPF  202 (582)
T ss_dssp             CEEEEECTTTCCEEEEEES
T ss_pred             cceEEecCCCCcEEEEEec
Confidence            6789999999988766543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.66  E-value=0.069  Score=39.19  Aligned_cols=97  Identities=13%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             eeEEEEecCCCcEEEEecC-CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe----ecCCcEEEecCCccc-
Q 012712          345 VKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS----GIESDIKILTPNAAD-  418 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~d~~i~iw~~~~~~-  418 (458)
                      |..+.++.++.+-++++.- .|.+++++.           ..+.++....++..+. +++    ++..-| -+|+.++. 
T Consensus       156 I~G~g~~~g~~~sfF~adl~SG~lri~tp-----------keGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~y  222 (313)
T d2hu7a1         156 IAGLGFFGGGRVSLFTSNLSSGGLRVFDS-----------GEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSV  222 (313)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEECC-----------SSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCE
T ss_pred             EEEEeeecCCcceEEEEecccCCEEEecC-----------CCCcccceeEccCcee-eeccCCCCceEEE-EEecccCce
Confidence            4444444444444444443 455555543           4556666666666655 332    222233 45777553 


Q ss_pred             -ccccccc------cccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712          419 -RATLPTN------IEQVCFSIYSADYWWSKSQNFSCSILLFE  454 (458)
Q Consensus       419 -~~~~~~~------~~~v~~~~~s~d~~~l~s~~~d~~i~~w~  454 (458)
                       .+.++..      .-.|+.+-+.||+++++.+-.||.-++|.
T Consensus       223 erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         223 EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             EECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             eeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence             3333322      12377778999999988889999877764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.59  E-value=0.18  Score=43.10  Aligned_cols=62  Identities=18%  Similarity=0.297  Sum_probs=40.7

Q ss_pred             ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712          150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR  214 (458)
Q Consensus       150 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  214 (458)
                      -...++|+|.|++ .+|++--..|.|++++..+++..............  ........++|+|+
T Consensus        26 L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~--~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDA--DGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCT--TSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCcccccc--CCCCceeeEEeCCC
Confidence            3466799999999 67776655799999998877654443332211111  02335788999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.53  E-value=0.15  Score=41.53  Aligned_cols=197  Identities=13%  Similarity=0.222  Sum_probs=106.7

Q ss_pred             CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec----CC--CEEEEecC
Q 012712            8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT----DG--DILISGSD   81 (458)
Q Consensus         8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----~~--~~l~s~~~   81 (458)
                      |...+++....++-|.+||++ |+.++.                     +  ..+.++.+..-.    ++  .-|+.++.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~---------------------~--~~Gr~NNVDvr~~~~l~~~~~di~vasn   93 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHS---------------------Y--HTGKLNNVDIRYDFPLNGKKVDIAAASN   93 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEE---------------------C--CSSCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEe---------------------c--ccCCcCccccccccccCCcceEEEEEeC
Confidence            345566666777779999997 877643                     1  124555544331    12  23444442


Q ss_pred             --C--CeEEEEECCCc-ceeeeecc------CCCcceeEEEE--ccCCCCe-EEEEEcCCCcEEEeecccccc--e---e
Q 012712           82 --D--RRVILWDWKTE-RVKLSFHS------GHNDNVFQAKI--MPFTDDR-SIVTCAADGQVRHAQILERGG--V---E  142 (458)
Q Consensus        82 --d--~~i~iwd~~~~-~~~~~~~~------~~~~~i~~~~~--~~~~~~~-~l~s~~~dg~i~vw~~~~~~~--~---~  142 (458)
                        +  .+|.+|.+... ..+..+..      .-...++.+|+  +|. ++. +++....+|.+..|.+.....  +   .
T Consensus        94 R~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~-~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~l  172 (353)
T d1h6la_          94 RSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQK-TGKYYAMVTGKEGEFEQYELNADKNGYISGKK  172 (353)
T ss_dssp             CCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSSEEEEE
T ss_pred             CcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCC-CCeEEEEEEcCCceEEEEEEEcCCCCceeeEe
Confidence              2  36888877532 22222211      11234777887  552 343 456677789999888743221  1   1


Q ss_pred             eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC--CccceeeecccCCCCcceeecceEEEEEC--CC-CCc
Q 012712          143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG--AATELFTCRPIDDRRNYMTVVNLNAIAID--PR-NAN  217 (458)
Q Consensus       143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~-~~~  217 (458)
                      .+.+ .-...+..|.+.+.. ..|+.+-++.-|..++.+..  .....+.......     ....+..++.-  ++ .+.
T Consensus       173 vr~f-~~~~q~EGCVvDde~-~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~-----l~~D~EGlaiy~~~~~~Gy  245 (353)
T d1h6la_         173 VRAF-KMNSQTEGMAADDEY-GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-----LTPDIEGLTIYYAADGKGY  245 (353)
T ss_dssp             EEEE-ECSSCEEEEEEETTT-TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSS-----CCSCEEEEEEEECGGGCEE
T ss_pred             eecc-CCCCccceEEEeCCC-CcEEEecCccceEEEEeccCCCccceeeecccCcc-----ccCCccccEEEEcCCCCeE
Confidence            1112 234578889999887 45677777766666665422  2222221111100     12245555543  22 245


Q ss_pred             EEEEecCCCeEEEEecCCC
Q 012712          218 LFAVAGSDEYTRLYDIRKY  236 (458)
Q Consensus       218 ~l~~~~~dg~i~i~d~~~~  236 (458)
                      +|++.-.+.+..+||....
T Consensus       246 livSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         246 LLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEEGGGTEEEEEESSTT
T ss_pred             EEEEcCCCCeEEEEecCCC
Confidence            6666667789999998763

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.30  E-value=0.26  Score=41.81  Aligned_cols=103  Identities=11%  Similarity=0.045  Sum_probs=60.5

Q ss_pred             ceEEEEEcCCCCeEEEEecCCC----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec----
Q 012712          152 RAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----  223 (458)
Q Consensus       152 ~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----  223 (458)
                      .+...+++|++..++++-+.+|    .++++|+.+++.+...-           .......++|.+++..++.+.-    
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-----------~~~~~~~~~W~~D~~~~~Y~~~~~~~  194 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-----------ERVKFSCMAWTHDGKGMFYNAYPQQD  194 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-----------EEECSCCEEECTTSSEEEEEECCCCS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-----------ccccccceEEcCCCCEEEEEEecccc
Confidence            3445678999976666655554    69999999998654221           1112356889998544444431    


Q ss_pred             -----------CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc--cccceeEEEeCCCCcEEEE
Q 012712          224 -----------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD--EQVGITGLAFSDQSELLVS  278 (458)
Q Consensus       224 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~  278 (458)
                                 ....|..+.+.+......             .+...  ....+..+..++++++++.
T Consensus       195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~-------------~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         195 GKSDGTETSTNLHQKLYYHVLGTDQSEDI-------------LCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCE-------------EEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CcccccccccCCcceEEEEECCCCccccc-------------cccccccCCceEEeeeccCCcceeeE
Confidence                       122577777766542211             11111  1234567778999988764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.79  E-value=0.37  Score=39.15  Aligned_cols=111  Identities=10%  Similarity=0.029  Sum_probs=68.1

Q ss_pred             ecCCC-EEEEe---cCCCeEEEEECCCcceee----eeccCCCcceeEEEEccCCCCeEEEEEc--C-------------
Q 012712           70 NTDGD-ILISG---SDDRRVILWDWKTERVKL----SFHSGHNDNVFQAKIMPFTDDRSIVTCA--A-------------  126 (458)
Q Consensus        70 s~~~~-~l~s~---~~d~~i~iwd~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~-------------  126 (458)
                      .++|. +|++.   ....+|.+|++.......    .+........+++....  ++..++|-.  .             
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~--~g~fy~Tnd~~~~~~~~~~~e~~~~  184 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLG  184 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCCSHHHHHHHHHTT
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec--CCCEEEecCccCcChhhhhhhHhhc
Confidence            45665 34443   345689999886443221    22222334578899988  898888831  1             


Q ss_pred             CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc
Q 012712          127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA  185 (458)
Q Consensus       127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  185 (458)
                      -+.-.+|....++...   ....-...+.|+++|++..++++-+..+.|+.|++.....
T Consensus       185 ~~~g~v~~~~~~~~~~---~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~  240 (340)
T d1v04a_         185 LAWSFVTYYSPNDVRV---VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT  240 (340)
T ss_dssp             CCCEEEEEECSSCEEE---EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCceeEEEEcCCceEE---EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc
Confidence            1233444443333211   2223456789999999977778888889999999876543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.60  E-value=0.89  Score=36.81  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=35.9

Q ss_pred             eeEEEEecCCCcEEEEe-cCCCeEEEEEecCCeEEEEe--ecCCceeeEEEecCC-CCeEEE
Q 012712          345 VKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVI--EADRHVVNCIEPHPH-STVLAS  402 (458)
Q Consensus       345 i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~-~~~l~s  402 (458)
                      .+.+++ +||+++|+.+ +..++|++|++.....+...  ..-...+-.+.+.++ |.+.+.
T Consensus       208 pNGI~~-s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         208 ANGINI-SPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEEEEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             cceeEE-CCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            578888 9999877654 55689999998754322221  112345667788764 444443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.55  E-value=1.1  Score=37.85  Aligned_cols=55  Identities=15%  Similarity=0.082  Sum_probs=38.9

Q ss_pred             cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc------ccccceEEEEEcCC
Q 012712          105 DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG------KHQGRAHKLAIEPG  161 (458)
Q Consensus       105 ~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~~~~  161 (458)
                      ...++|+|.|  ++++|++--..|.|++++..++.......+.      .-......|+++|+
T Consensus        27 ~~P~~la~~p--dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGP--DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeC--CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4667999999  9998888766799999987766543322221      12346788999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.48  E-value=1.5  Score=35.41  Aligned_cols=157  Identities=9%  Similarity=0.107  Sum_probs=80.9

Q ss_pred             CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC----CCC-eEEEEec-C-C--CeEEEEeCCCCC-cc
Q 012712          117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP----GSP-HVFYTCG-E-D--GLVQHFDLRTGA-AT  186 (458)
Q Consensus       117 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~-~~l~s~~-~-d--g~i~iwd~~~~~-~~  186 (458)
                      +.++++....++-|.+||+. ++.+..  +.  .+.++.+..-.    .+. .-++.++ . +  ..|.+|.+.... ..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~--~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHS--YH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEE--CC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEe--cc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            55677777777779999984 565544  22  23444444321    121 2234444 2 2  357788765322 12


Q ss_pred             ceeeecccCCCCcceeecceEEEEE--CCCCCc-EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712          187 ELFTCRPIDDRRNYMTVVNLNAIAI--DPRNAN-LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG  263 (458)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      ..+.....   ........++.+|+  +|.++. ++++...+|.+..|.+........       .. .....+ .....
T Consensus       114 ~~~~~~~~---p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v-------~~-~lvr~f-~~~~q  181 (353)
T d1h6la_         114 QSITDPNR---PIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYI-------SG-KKVRAF-KMNSQ  181 (353)
T ss_dssp             EECSCSSS---CEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSE-------EE-EEEEEE-ECSSC
T ss_pred             cccccccc---ccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCce-------ee-Eeeecc-CCCCc
Confidence            21111100   00001123556665  776443 567777889999887743221000       00 000011 11346


Q ss_pred             eeEEEeCCCCcEEEEecCC-cEEEEEcc
Q 012712          264 ITGLAFSDQSELLVSYNDE-FIYLFTQD  290 (458)
Q Consensus       264 i~~~~~~~~~~~l~~~~~~-~i~i~~~~  290 (458)
                      +..|++.+....|..+-++ .+..++..
T Consensus       182 ~EGCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         182 TEGMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             cceEEEeCCCCcEEEecCccceEEEEec
Confidence            8889999988888777755 56666654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.06  E-value=1.9  Score=35.28  Aligned_cols=185  Identities=8%  Similarity=-0.031  Sum_probs=97.0

Q ss_pred             eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEE
Q 012712          206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIY  285 (458)
Q Consensus       206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~  285 (458)
                      ..-++.++. ..++++|+.++ +.+......+.....  ......+.+.    ..-..|..++|+.+  .|+...++.+.
T Consensus        39 ~~LLAVsn~-~GLl~aa~~~~-l~V~~t~~l~~~~~~--~~~~~~~~~~----~~ip~v~~vafs~d--~l~v~~~~~l~  108 (381)
T d1xipa_          39 LQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITS--DSTPLTFKWE----KEIPDVIFVCFHGD--QVLVSTRNALY  108 (381)
T ss_dssp             CBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHS--SSCCCCCSEE----EECTTEEEEEEETT--EEEEEESSEEE
T ss_pred             cceEEEeCC-CCEEEEECCCE-EEEEEHHHHHHHhhc--cCCCCcceec----cCCCCeEEEEeeCC--EEEEEeCCCEE
Confidence            556777776 44777777664 667665432110000  0000001111    11235888999755  46666777788


Q ss_pred             EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC
Q 012712          286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG  365 (458)
Q Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg  365 (458)
                      .++...-..                                      .........  .+..+.+ .|.  .++....+|
T Consensus       109 ~~~~~~l~~--------------------------------------~~~~~~~~~--~~~~~~~-~p~--~~~l~~~~~  145 (381)
T d1xipa_         109 SLDLEELSE--------------------------------------FRTVTSFEK--PVFQLKN-VNN--TLVILNSVN  145 (381)
T ss_dssp             EEESSSTTC--------------------------------------EEEEEECSS--CEEEEEE-CSS--EEEEEETTS
T ss_pred             EEEeecccc--------------------------------------ccccccccc--cccceec-CCc--eeEEEecCC
Confidence            887665211                                      111111111  2566665 554  455566688


Q ss_pred             eEEEEEecCCeEEEEeec-----CCceeeEEEecCCCCeEEEeecCCcEEEe-cCCccccc-ccccccccEEEEEEecCC
Q 012712          366 RIFIWKKKGGELIRVIEA-----DRHVVNCIEPHPHSTVLASSGIESDIKIL-TPNAADRA-TLPTNIEQVCFSIYSADY  438 (458)
Q Consensus       366 ~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw-~~~~~~~~-~~~~~~~~v~~~~~s~d~  438 (458)
                      .+.++++..++......+     -.+.+.+++|++.|+.++++..+ ...+- ++...... ........+.++.|-.+.
T Consensus       146 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~  224 (381)
T d1xipa_         146 DLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  224 (381)
T ss_dssp             EEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             CEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEecCc
Confidence            999999988754332211     12457888898888888876432 22221 11111111 111233457888888777


Q ss_pred             cEEEee
Q 012712          439 WWSKSQ  444 (458)
Q Consensus       439 ~~l~s~  444 (458)
                      .+++.-
T Consensus       225 ~F~vvy  230 (381)
T d1xipa_         225 DFLAVF  230 (381)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            777643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.37  E-value=2.4  Score=34.68  Aligned_cols=180  Identities=9%  Similarity=0.094  Sum_probs=100.5

Q ss_pred             CceEEEEEecCCCEEEEecCCCeEEEEECCCc-----------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712           62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTE-----------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV  130 (458)
Q Consensus        62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i  130 (458)
                      ....-++.++...+++.|+.++ ++|-.++.-           ......   .-..|..++|+-  +  .|+.. .++.+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~--d--~l~v~-~~~~l  107 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHG--D--QVLVS-TRNAL  107 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEET--T--EEEEE-ESSEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeC--C--EEEEE-eCCCE
Confidence            4566788888777888888775 667664211           111111   113588899974  3  34443 34567


Q ss_pred             EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712          131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA  210 (458)
Q Consensus       131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  210 (458)
                      ..++...-.....  ......++..+.++|..   ++....++.+.++++..++.........     ...-...+.+++
T Consensus       108 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~p~~---~~l~~~~~~~~~~~l~~~~~~~~~~~v~-----~~~~~~~~~~v~  177 (381)
T d1xipa_         108 YSLDLEELSEFRT--VTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQLAQNVT-----SFDVTNSQLAVL  177 (381)
T ss_dssp             EEEESSSTTCEEE--EEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEEEEESEE-----EEEECSSEEEEE
T ss_pred             EEEEeeccccccc--cccccccccceecCCce---eEEEecCCCEEEEEeccCccccccCCcc-----eEEecCCceEEE
Confidence            7777665433322  22234567888888853   5556667899999998876433221000     000223467777


Q ss_pred             ECCCCCcEEEEecCCCeEEEE-ecCCCccCCCccCCCCCCCcCCCccc--cccccceeEEEeCCCCcEEEEe
Q 012712          211 IDPRNANLFAVAGSDEYTRLY-DIRKYKWDGSTDFGQPADYFCPPNLI--GDEQVGITGLAFSDQSELLVSY  279 (458)
Q Consensus       211 ~~p~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~  279 (458)
                      |++. +..++++..+ ...+- ++...                 ..+.  ......+.++.|..+..++++.
T Consensus       178 ws~k-gkq~v~~~g~-~~q~k~~i~~~-----------------~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         178 LKDR-SFQSFAWRNG-EMEKQFEFSLP-----------------SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ETTS-CEEEEEEETT-EEEEEEEECCC-----------------HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EeCC-cEEEEEeCCC-ceeeccCCCCc-----------------cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            7775 5666665322 12111 11110                 1111  1124568899999988888765

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.69  E-value=1.7  Score=31.74  Aligned_cols=222  Identities=15%  Similarity=0.126  Sum_probs=116.7

Q ss_pred             CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-CEEEE------ecC
Q 012712            9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILIS------GSD   81 (458)
Q Consensus         9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s------~~~   81 (458)
                      +.++|+++...|.+.++-+..++.++-                        .+.+|.....-..+ .++.-      |-.
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkL------------------------tkePI~~~~~Pk~~ldfi~f~RDV~kGkE   80 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKL------------------------NREPINSVLDPHYGVGRVILVRDVSKGAE   80 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEEC------------------------CSSCCSEECEECTTBSEEEEEEECSTTSC
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEE------------------------ecccccCcCCCccCcceEEEEeehhcCcc
Confidence            345788888899999999887765521                        22333222110000 11111      111


Q ss_pred             CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc-------ccceE
Q 012712           82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-------QGRAH  154 (458)
Q Consensus        82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~-------~~~v~  154 (458)
                      -..|.+-++.......++.....-.|.++++.   +.+..++|+......+|-++.++......+...       ..-|.
T Consensus        81 ~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd---dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~  157 (313)
T d2hu7a1          81 QHALFKVNTSRPGEEQRLEAVKPMRILSGVDT---GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIA  157 (313)
T ss_dssp             CEEEEEEETTSTTCEEECTTSCSBEEEEEEEC---SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEE
T ss_pred             eeeEEEEccCCCCeeeEecCCceEEEEEeeec---CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEE
Confidence            23445555543233344422333567888885   566777888878889998887765433323322       13344


Q ss_pred             EEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC---CeEEE
Q 012712          155 KLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---EYTRL  230 (458)
Q Consensus       155 ~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i  230 (458)
                      .+.+-..++.-|+++.. .|.+++++...+.                     ++.....+.  +.++++.+.   ....-
T Consensus       158 G~g~~~g~~~sfF~adl~SG~lri~tpkeGS---------------------~~~ay~~~g--nKV~sdyEt~gEsywit  214 (313)
T d2hu7a1         158 GLGFFGGGRVSLFTSNLSSGGLRVFDSGEGS---------------------FSSASISPG--MKVTAGLETAREARLVT  214 (313)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEECCSSEE---------------------EEEEEECTT--SCEEEEEEESSCEEEEE
T ss_pred             EEeeecCCcceEEEEecccCCEEEecCCCCc---------------------ccceeEccC--ceeeeccCCCCceEEEE
Confidence            44444334344555555 7788888766553                     445555553  334443221   12224


Q ss_pred             EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712          231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT  288 (458)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~  288 (458)
                      +|++.++.... ++       ....+..-....|.-+-+.|++++++.+- ++.-.+|.
T Consensus       215 ~D~~s~~yerv-e~-------P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         215 VDPRDGSVEDL-EL-------PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             ECTTTCCEEEC-CC-------SSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             EecccCceeee-ec-------CcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            57775542211 00       11112222234567777999999855554 77767765

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=86.98  E-value=5  Score=33.33  Aligned_cols=124  Identities=14%  Similarity=0.086  Sum_probs=64.8

Q ss_pred             CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec------cccccceEEEEEcCCCCeEEEEecCC---
Q 012712          102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL------GKHQGRAHKLAIEPGSPHVFYTCGED---  172 (458)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~d---  172 (458)
                      +-.+.|.+|+++|. +.++++++...|-|  |.-..+........      ......+.+|+++|.++..++.+..+   
T Consensus         9 ~~gg~~~~i~~~P~-~~~~~ya~~~~gGv--~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~   85 (427)
T d2ebsa1           9 GGGGYITGIVAHPK-TKDLLYARTDIGGA--YRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG   85 (427)
T ss_dssp             CBCSCEEEEEECSS-STTCEEEEESSSCE--EEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred             CCCCcEEEEEECCC-CCCEEEEEecCCCE--EEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccC
Confidence            45678999999994 55666666665554  43333332221111      12334688999999887777665422   


Q ss_pred             -CeEEEEeC-CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712          173 -GLVQHFDL-RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR  229 (458)
Q Consensus       173 -g~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  229 (458)
                       ....+|-- ..++.=..+...... ............+.++|.+.+.++++..++.|.
T Consensus        86 ~~~~gi~~S~DgG~TW~~~~~~~~~-~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~  143 (427)
T d2ebsa1          86 DEWAAFYVSEDRGQSFTIYESPFPM-GANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW  143 (427)
T ss_dssp             SSCCEEEEESSTTSEEEEEECSSCC-CTTSTTTTSCCCEEECTTCTTCEEEECSSSCEE
T ss_pred             CcCccEEEeCCCCccceeecCCccc-CccccCccceeEEEECCCccCccccccccccee
Confidence             11234432 233321111111000 000001123456889998777888777665553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=8.9  Score=29.35  Aligned_cols=65  Identities=8%  Similarity=0.059  Sum_probs=35.0

Q ss_pred             CCcEEEEecCC-----CeEEEEEecCCeEEEEeecCCcee-eEEEecCCCCeEEEeecCC-----cEEEecCCcccc
Q 012712          354 KCEYVVSGSDC-----GRIFIWKKKGGELIRVIEADRHVV-NCIEPHPHSTVLASSGIES-----DIKILTPNAADR  419 (458)
Q Consensus       354 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~~d~-----~i~iw~~~~~~~  419 (458)
                      +++.++.|+.+     .....+|..+.+....-....... .+++. .++++++.|+.++     .+.+||+++++-
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            45666666544     356777876655433211111111 12222 3678888887654     377888887643

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.02  E-value=9.1  Score=29.30  Aligned_cols=21  Identities=14%  Similarity=0.091  Sum_probs=14.3

Q ss_pred             CCcEEEEecC-C-----cEEEEEccCC
Q 012712          272 QSELLVSYND-E-----FIYLFTQDMG  292 (458)
Q Consensus       272 ~~~~l~~~~~-~-----~i~i~~~~~~  292 (458)
                      ++++++.|+. +     .+.+||+.+.
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCC
Confidence            6777777652 2     3888998764