Citrus Sinensis ID: 012785
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 456 | 2.2.26 [Sep-21-2011] | |||||||
| Q94A02 | 440 | Tryptophan aminotransfera | yes | no | 0.947 | 0.981 | 0.589 | 1e-149 | |
| Q9S7N2 | 391 | Tryptophan aminotransfera | no | no | 0.782 | 0.913 | 0.555 | 1e-119 | |
| Q9LR29 | 388 | Tryptophan aminotransfera | no | no | 0.778 | 0.914 | 0.547 | 1e-118 | |
| Q9FE98 | 457 | Tryptophan aminotransfera | no | no | 0.771 | 0.770 | 0.378 | 5e-71 | |
| Q93Z38 | 463 | Tryptophan aminotransfera | no | no | 0.767 | 0.755 | 0.347 | 9e-68 | |
| P31756 | 447 | Alliin lyase (Fragment) O | N/A | no | 0.765 | 0.780 | 0.370 | 1e-65 | |
| P31757 | 479 | Alliin lyase OS=Allium ce | N/A | no | 0.817 | 0.778 | 0.357 | 6e-65 | |
| Q01594 | 486 | Alliin lyase 1 OS=Allium | N/A | no | 0.774 | 0.726 | 0.361 | 3e-63 | |
| Q41233 | 473 | Alliin lyase 2 OS=Allium | N/A | no | 0.774 | 0.746 | 0.358 | 8e-63 | |
| B0K735 | 351 | Histidinol-phosphate amin | yes | no | 0.346 | 0.450 | 0.287 | 3e-07 |
| >sp|Q94A02|TAR2_ARATH Tryptophan aminotransferase-related protein 2 OS=Arabidopsis thaliana GN=TAR2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/453 (58%), Positives = 325/453 (71%), Gaps = 21/453 (4%)
Query: 1 MAKITPLFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEKE 60
M +I S +N+LV+SLA+N SLI + + K + + S + + V
Sbjct: 1 MGQIPRFLSWRNMLVLSLAINFSLILKIL----KGDRERGDSWDRTAYVSIWPVVSTTAS 56
Query: 61 HVSERTHLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTI 120
S + S + S + ++ +RIIN+ GDPT+YE+YWQ+ G+ TT+
Sbjct: 57 ESSSLSSASCNYS--------------KIEEDDDRIINLKFGDPTVYERYWQENGEVTTM 102
Query: 121 VIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAAL 180
VIPGWQSLSYFSD NLCWFLEPE AKE+VR+HKVVGNA+T++ IVVGTGSTQL+QAAL
Sbjct: 103 VIPGWQSLSYFSDENNLCWFLEPELAKEIVRVHKVVGNAVTQDRFIVVGTGSTQLYQAAL 162
Query: 181 YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNN 240
YALS D S PI+VVSA PYYS+YP ITDC+KS LY+W GDAK + +DGPYIELVTSPNN
Sbjct: 163 YALSPHDDSGPINVVSATPYYSTYPLITDCLKSGLYRWGGDAKTYKEDGPYIELVTSPNN 222
Query: 241 PDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300
PDG +R+SVVN + GIL+HDLAYYWPQYT IT PADHD+MLFT SKSTGHAG RIGWALV
Sbjct: 223 PDGFLRESVVNSTEGILIHDLAYYWPQYTPITSPADHDVMLFTASKSTGHAGIRIGWALV 282
Query: 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360
KD E A+KM +YIELNTIGVSKDSQLR AKVLKVVSDSC + FF+ + M R
Sbjct: 283 KDRETARKMIEYIELNTIGVSKDSQLRVAKVLKVVSDSC--GNVTGKSFFDHSYDAMYER 340
Query: 361 WKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLK-GNKIL 419
WK L+ A + + FSVP+ SQ C F GR FEPQPAFAW KCE+ I DCE FL+ KIL
Sbjct: 341 WKLLKQAAKDTKRFSVPDFVSQRCNFFGRVFEPQPAFAWFKCEEGIVDCEKFLREEKKIL 400
Query: 420 TRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452
T+SGK+FG VRISMLDRD N+N+F+ R++
Sbjct: 401 TKSGKYFGDELSNVRISMLDRDTNFNIFLHRIT 433
|
Involved in auxin production. Both TAA1 and TAR2 are required for maintaining proper auxin levels in roots, while TAA1, TAR1 and TAR2 are required for proper embryo patterning. Involved in the maintenance of the root stem cell niches. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 7 |
| >sp|Q9S7N2|TAA1_ARATH Tryptophan aminotransferase 1 OS=Arabidopsis thaliana GN=TAA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 201/362 (55%), Positives = 272/362 (75%), Gaps = 5/362 (1%)
Query: 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV 155
++N+DHGDPT YE+YW+K+GD+ T+ I G +SYFSD+ NLCWFLEPE + LH V
Sbjct: 24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGV 83
Query: 156 VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRL 215
VGNA TE+ +IVVGTGSTQL QAA++ALSS S+P+SVV+AAP+YS+Y T V+S +
Sbjct: 84 VGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGM 143
Query: 216 YKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVVNR---SGGILVHDLAYYWPQYTSIT 272
YKW GDA F+K GPYIELVTSPNNPDG++R++VVNR ++HD AYYWP YT IT
Sbjct: 144 YKWEGDAWGFDKKGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHYTPIT 203
Query: 273 YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVL 332
DHD+MLFT SK TGHAG+RIGWALVKD EVAKKM +YI +N+IGVSK+SQ+R AK+L
Sbjct: 204 RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKIL 263
Query: 333 KVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392
V+ ++CK S SE E FF++ M RW++LR V++S F++P+ P FC + G++ E
Sbjct: 264 NVLKETCK-SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLE 322
Query: 393 PQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452
PAFAWL ++E D S L+ +K+++R+G+ G K+VR+SML R++ +N+F++RL+
Sbjct: 323 SYPAFAWLGTKEET-DLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLA 381
Query: 453 KI 454
+
Sbjct: 382 NM 383
|
L-tryptophan aminotransferase involved in auxin (IAA) biosynthesis. Can convert L-tryptophan and pyruvate to indole-3-pyruvic acid (IPA) and alanine. Catalyzes the first step in IPA branch of the auxin biosynthetic pathway. Required for auxin production to initiate multiple change in growth in response to environmental and developmental cues. It is also active with phenylalanine, tyrosine, leucine, alanine, methionine and glutamine. Both TAA1 and TAR2 are required for maintaining proper auxin levels in roots, while TAA1, TAR1 and TAR2 are required for proper embryo patterning. Involved in the maintenance of the root stem cell niches and required for shade avoidance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|Q9LR29|TAR1_ARATH Tryptophan aminotransferase-related protein 1 OS=Arabidopsis thaliana GN=TAR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/360 (54%), Positives = 259/360 (71%), Gaps = 5/360 (1%)
Query: 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV 155
IIN+D GDPT +++YW K D+ T+VIP W +SYFSD +N+CWFLEPE K + LH
Sbjct: 25 IINLDQGDPTAFQEYWMKKKDRCTVVIPAWDLMSYFSDTKNVCWFLEPELEKAIKALHGA 84
Query: 156 VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRL 215
+GNA TE +IVVGTGS+QL QAAL+ALSS +P+S+V+A PYYS+Y ++S L
Sbjct: 85 IGNAATEERYIVVGTGSSQLCQAALFALSSLSEVKPVSIVAAVPYYSTYVEEASYLQSTL 144
Query: 216 YKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVVN-RSGGILVHDLAYYWPQYTSITYP 274
YKW GDA+ F+K GPYIELVTSPNNPDG +R+ VVN R GG ++HDLAYYWP YT IT
Sbjct: 145 YKWEGDARTFDKKGPYIELVTSPNNPDGIMREPVVNRREGGKVIHDLAYYWPHYTPITRR 204
Query: 275 ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKV 334
DHDLMLFT SK TGHAG+RIGWALVKD+EVAKKM Y+ +N+IGVSK+SQ RA +L
Sbjct: 205 QDHDLMLFTFSKITGHAGSRIGWALVKDIEVAKKMVHYLTINSIGVSKESQTRATTILNE 264
Query: 335 VSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394
++ +C+ ++ E FFE+ +M +RW++LR V+ F++P P FC F G+
Sbjct: 265 LTKTCR---TQSESFFEYGYEKMKSRWERLREVVESGDAFTLPNYPQDFCNFFGKTLSTS 321
Query: 395 PAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454
PAFAWL ++E D S LK K+LTR G G + +YVR+SML RD+++++ +QRL+ I
Sbjct: 322 PAFAWLGYKEE-RDLGSLLKEKKVLTRGGDRCGCNKRYVRVSMLSRDDDFDVSLQRLATI 380
|
Probably involved in auxin production. TAA1, TAR1 and TAR2 are required for proper embryo patterning. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|Q9FE98|TAR3_ARATH Tryptophan aminotransferase-related protein 3 OS=Arabidopsis thaliana GN=TAR3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 218/367 (59%), Gaps = 15/367 (4%)
Query: 97 INVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV 156
++ + GDP E +W + +++ +V GW +SY + L F+ E K + +LH VV
Sbjct: 90 VDANSGDPLFLEPFWIRKAEESAVVESGWHRMSYTFNGYGL--FMSAELEKIIRKLHNVV 147
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLY 216
GNA+T+N I+ G G+TQL A+++ALS ++ P +V++ PYY+ Y D S
Sbjct: 148 GNAVTDNRFIIFGAGATQLLAASVHALSQTNSLSPSRLVTSVPYYNLYKQQADFFNSTNL 207
Query: 217 KWAGDA------KRFNKDGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTS 270
K+ GDA +R + IE+VTSPNNPDG ++++V++ +HD AYYWP ++
Sbjct: 208 KFEGDASAWKRSERNDDIKQVIEIVTSPNNPDGKLKRAVLDGPNVKYIHDYAYYWPYFSP 267
Query: 271 ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAK 330
IT AD DL LF++SK+TGHAG+R GWALVK+ V +KM YI L+++GVS+D+QLRA +
Sbjct: 268 ITRQADEDLSLFSLSKTTGHAGSRFGWALVKEKTVYEKMKIYISLSSMGVSRDTQLRALQ 327
Query: 331 VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390
+LKVV G+E F F + RW+ L S FS+ + ++C + +
Sbjct: 328 LLKVV---IGDGGNE---IFRFGYGTLKKRWEILNKIFSMSTRFSLETIKPEYCNYFKKV 381
Query: 391 FEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQ 449
E P++AW+KCE+ E DC K KI R+G+ FG ++VR+S++ ++++ +
Sbjct: 382 REFTPSYAWVKCERPEDTDCYEIFKAAKITGRNGEMFGSDERFVRLSLIRSQDDFDQLIA 441
Query: 450 RLSKILS 456
L K +S
Sbjct: 442 MLKKFVS 448
|
Probable aminotransferase. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q93Z38|TAR4_ARATH Tryptophan aminotransferase-related protein 4 OS=Arabidopsis thaliana GN=TAR4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 258 bits (658), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 128/368 (34%), Positives = 216/368 (58%), Gaps = 18/368 (4%)
Query: 97 INVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV 156
++ + GDP E +W + +++ I++ GW +SY + ++ E K + +LH VV
Sbjct: 91 VDANSGDPLFLEPFWMRQAERSAILVSGWHRMSYIYEDGT---YVSRELEKVIRKLHSVV 147
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSR 214
GNA+T+N ++ G+G+TQL AA++ALS + S P ++++ PYY+ Y + S
Sbjct: 148 GNAVTDNRFVIFGSGTTQLLAAAVHALSLTNSSVSSPARLLTSIPYYAMYKDQAEFFDSA 207
Query: 215 LYKWAGDAKRFNKDG------PYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQY 268
K+ G+A + + G IE+VTSPNNPDG ++++V++ +HD AYYWP +
Sbjct: 208 HLKFEGNASAWKQSGRNDNITQVIEVVTSPNNPDGKLKRAVLDGPNVKTLHDYAYYWPHF 267
Query: 269 TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRA 328
+ IT+P D DL LF++SK+TGHAG+R GW LVKD + +KM ++I L ++GVSK++QL
Sbjct: 268 SPITHPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDRFIRLTSMGVSKETQLHV 327
Query: 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388
++LKVV G+E F F + RW+ L S FS+ + ++C +
Sbjct: 328 LQLLKVV---VGDGGNE---IFSFGYGTVKKRWETLNKIFSMSTRFSLQTIKPEYCNYFK 381
Query: 389 RAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447
+ E P++AW+KCE+ E +C + KI R+G FG ++VR+S++ ++++
Sbjct: 382 KVREFTPSYAWVKCERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLSLIRSQDDFDQL 441
Query: 448 VQRLSKIL 455
+ L K++
Sbjct: 442 IAMLKKLV 449
|
Probable aminotransferase. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|P31756|ALLN_ALLCG Alliin lyase (Fragment) OS=Allium cepa var. aggregatum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 208/364 (57%), Gaps = 15/364 (4%)
Query: 98 NVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-VRNLCWFLEPEFAKEVVRLHKVV 156
+V GD E+YWQ+ + + +++ GW SYF + V N F+ E K + LH++V
Sbjct: 62 DVASGDGLFLEEYWQQHKENSAVLVSGWHRTSYFFNPVSN---FISFELEKTIKELHEIV 118
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIS----VVSAAPYYSSYPSITDCVK 212
GNA ++ +IV G G TQL + +LS + P + VV+ APYY + T
Sbjct: 119 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPCAPQSKVVAHAPYYPVFREQTKYFD 178
Query: 213 SRLYKWAGDAKRF-NKDGP--YIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYT 269
+ Y+W G+A + N P +IE+VTSPNNP+G +R V+ G ++D+ YYWP YT
Sbjct: 179 KKGYEWKGNAADYVNTSTPEQFIEMVTSPNNPEGLLRHEVIK--GCKSIYDMVYYWPHYT 236
Query: 270 SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAA 329
I Y AD D+MLFT+SK TGH+G+R GWAL+KD V K+ Y+ NT G S+++QLR+
Sbjct: 237 PIKYKADEDIMLFTMSKYTGHSGSRFGWALIKDETVYNKLLNYMTKNTEGTSRETQLRSL 296
Query: 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLG 388
K+LK V+ K F ++ RW + + KS FS +LP S++C +
Sbjct: 297 KILKEVTAMIKTQKGTMRDLNTFGFQKLRERWVNITALLDKSDRFSYQKLPQSEYCNYFR 356
Query: 389 RAFEPQPAFAWLKCE-QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447
R P P++AW+KCE +E +DC + +I T+SG+ F +YVR+S++ ++++
Sbjct: 357 RMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQSGEGFEAGSRYVRLSLIKTKDDFDQL 416
Query: 448 VQRL 451
+ L
Sbjct: 417 MYYL 420
|
Allium cepa var. aggregatum (taxid: 28911) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|P31757|ALLN_ALLCE Alliin lyase OS=Allium cepa PE=1 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 215/389 (55%), Gaps = 16/389 (4%)
Query: 73 SPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFS 132
SP ++ T D + G +V GD E+YWQ+ + + +++ GW +SYF
Sbjct: 70 SPKCECNTCYTGADCSEKITGCSA-DVASGDGLFLEEYWQQHKENSAVLVSGWHRMSYFF 128
Query: 133 D-VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEP 191
+ V N F+ E K + LH++VGNA ++ +IV G G TQL + +LS + P
Sbjct: 129 NPVSN---FISFELEKTIKELHEIVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATP 185
Query: 192 IS----VVSAAPYYSSYPSITDCVKSRLYKWAGDAKRF-NKDGP--YIELVTSPNNPDGS 244
+ VV+ APYY + T + Y+W G+A + N P +IE+VTSPNNP+G
Sbjct: 186 CAPQSKVVAHAPYYPVFREQTKYFDKKGYEWKGNAADYVNTSTPEQFIEMVTSPNNPEGL 245
Query: 245 VRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304
+R V+ G ++ + YYWP YT I Y AD D+MLFT+SK TGH+G+R GWAL+KD
Sbjct: 246 LRHEVI--KGCKSIYYMVYYWPHYTPIKYKADEDIMLFTMSKYTGHSGSRFGWALIKDET 303
Query: 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364
V K+ Y+ NT G S+++QLR+ K+LK V K F ++ RW +
Sbjct: 304 VYNKLLNYMTKNTEGTSRETQLRSLKILKEVIAMVKTQNGTMRDLNTFGFQKLRERWVNI 363
Query: 365 RMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCE-QEIEDCESFLKGNKILTRS 422
+ KS FS +LP S++C + R P P++AW+KCE +E +DC + +I T+S
Sbjct: 364 TALLDKSDRFSYQKLPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQS 423
Query: 423 GKHFGFSPKYVRISMLDRDENYNLFVQRL 451
G+ F +YVR+S++ ++++ + L
Sbjct: 424 GEGFEAGSRYVRLSLIKTKDDFDQLMYYL 452
|
Allium cepa (taxid: 4679) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q01594|ALLN1_ALLSA Alliin lyase 1 OS=Allium sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 208/368 (56%), Gaps = 15/368 (4%)
Query: 98 NVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-VRNLCWFLEPEFAKEVVRLHKVV 156
+V GD E+YW++ + + +++ W +SYF + V N F+ E K + LH+VV
Sbjct: 98 DVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSN---FISFELEKTIKELHEVV 154
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIS----VVSAAPYYSSYPSITDCVK 212
GNA ++ +IV G G TQL + +LS + P + VV+ AP+Y + T
Sbjct: 155 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFN 214
Query: 213 SRLYKWAGDAKRF-NKDGP--YIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYT 269
+ Y WAG+A + N P YIE+VTSPNNP+G +R +V+ G ++D+ YYWP YT
Sbjct: 215 KKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVI--KGCKSIYDMVYYWPHYT 272
Query: 270 SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAA 329
I Y AD D++LFT+SK TGH+G+R GWAL+KD V + Y+ NT G +++QLR+
Sbjct: 273 PIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSL 332
Query: 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLG 388
KVLK V K F ++ RW + + +S FS ELP S++C +
Sbjct: 333 KVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFR 392
Query: 389 RAFEPQPAFAWLKCE-QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447
R P P++AW+KCE +E +DC + +I T++G F S +YVR+S++ ++++
Sbjct: 393 RMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQL 452
Query: 448 VQRLSKIL 455
+ L ++
Sbjct: 453 MYYLKDMV 460
|
Able to cleave the C-S bond of sulfoxide derivatives of Cys to produce allicin, thus giving rise to all sulfur compounds which are responsible for most of the properties of garlic, such as the specific smell and flavor as well as the health benefits like blood lipid or blood pressure lowering. Allium sativum (taxid: 4682) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q41233|ALLN2_ALLSA Alliin lyase 2 OS=Allium sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 207/368 (56%), Gaps = 15/368 (4%)
Query: 98 NVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-VRNLCWFLEPEFAKEVVRLHKVV 156
+V GD E+YW++ + + +++ W +SYF + V N F+ E K + LH+VV
Sbjct: 85 DVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSN---FISFELEKTIKELHEVV 141
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIS----VVSAAPYYSSYPSITDCVK 212
GNA ++ +IV G G TQL + +LS + P + VV+ AP+Y + T
Sbjct: 142 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 201
Query: 213 SRLYKWAGDAKRF-NKDGP--YIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYT 269
+ Y WAG+A + N P YIE+VTSPNNP+G +R +V+ G ++D+ YYWP YT
Sbjct: 202 KKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVI--KGCKSIYDMVYYWPHYT 259
Query: 270 SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAA 329
I Y AD D++LFT+SK TGH+G+R GWAL+KD V + Y+ NT G +++QLR+
Sbjct: 260 PIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSL 319
Query: 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLG 388
KVLK + K F ++ RW + + +S FS ELP S++C +
Sbjct: 320 KVLKEIVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFR 379
Query: 389 RAFEPQPAFAWLKCE-QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447
R P P++AW+ CE +E +DC + +I T+SG F S +YVR+S++ ++++
Sbjct: 380 RMRPPSPSYAWVNCEWEEDKDCYQTFQNGRINTQSGVGFEASSRYVRLSLIKTQDDFDQL 439
Query: 448 VQRLSKIL 455
+ L ++
Sbjct: 440 MYYLKDMV 447
|
Able to cleave the C-S bond of sulfoxide derivatives of Cys to produce allicin, thus giving rise to all sulfur compounds which are responsible for most of the properties of garlic, such as the specific smell and flavor as well as the health benefits like blood lipid or blood pressure lowering. Allium sativum (taxid: 4682) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|B0K735|HIS8_THEP3 Histidinol-phosphate aminotransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 33/191 (17%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPY-----YSSYPSITDCVK--SRL-- 215
+I VG GS ++ + A ++ V A P+ YS Y I V+ RL
Sbjct: 78 NIFVGNGSDEIIHLIMLAFINKGD------VVAYPHPSFAMYSVYSKIAGAVEIPVRLRE 131
Query: 216 -YKWAGDA--KRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAY---Y 264
Y + D+ K K P + + +PNNP GSV + ++ +S GI+V D AY Y
Sbjct: 132 DYNYDVDSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIQKSNGIVVVDEAYFEFY 191
Query: 265 WPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSK 322
+ ++ ++L T+SK+ G AG R+G+A+ + + KY+ L + ++
Sbjct: 192 GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANE-----NILKYLNLVKSPYNINS 246
Query: 323 DSQLRAAKVLK 333
SQ+ A KVL+
Sbjct: 247 LSQVIALKVLR 257
|
Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 456 | ||||||
| 147862850 | 457 | hypothetical protein VITISV_013176 [Viti | 0.969 | 0.967 | 0.675 | 1e-177 | |
| 225456934 | 473 | PREDICTED: tryptophan aminotransferase-r | 0.969 | 0.934 | 0.675 | 1e-177 | |
| 255540565 | 444 | Alliin lyase precursor, putative [Ricinu | 0.942 | 0.968 | 0.654 | 1e-176 | |
| 357461859 | 441 | Alliin lyase [Medicago truncatula] gi|35 | 0.960 | 0.993 | 0.641 | 1e-166 | |
| 356513633 | 452 | PREDICTED: tryptophan aminotransferase-r | 0.973 | 0.982 | 0.637 | 1e-166 | |
| 356507280 | 445 | PREDICTED: tryptophan aminotransferase-r | 0.971 | 0.995 | 0.639 | 1e-164 | |
| 449440999 | 438 | PREDICTED: tryptophan aminotransferase-r | 0.949 | 0.988 | 0.655 | 1e-163 | |
| 356518952 | 439 | PREDICTED: tryptophan aminotransferase-r | 0.960 | 0.997 | 0.647 | 1e-163 | |
| 449520577 | 454 | PREDICTED: tryptophan aminotransferase-r | 0.940 | 0.944 | 0.639 | 1e-162 | |
| 449440997 | 454 | PREDICTED: tryptophan aminotransferase-r | 0.940 | 0.944 | 0.639 | 1e-162 |
| >gi|147862850|emb|CAN80923.1| hypothetical protein VITISV_013176 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/456 (67%), Positives = 372/456 (81%), Gaps = 14/456 (3%)
Query: 1 MAKITPLFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEKE 60
M K++ +FSL++ LV+SLALNV+LI R ++E E ++Q R++MA K
Sbjct: 1 MGKLSGVFSLRHFLVLSLALNVALISRVVYEGENWR-------EEQIRALMADASEKSA- 52
Query: 61 HVSERTHLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTI 120
HVS SPS S ++TST+I+ D GER+IN+DHGDPTMYE++WQ++GD TTI
Sbjct: 53 HVS--MSSPPPPSPSTPSSMAVTSTEIK--DDGERVINLDHGDPTMYERFWQQMGDITTI 108
Query: 121 VIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAAL 180
VI GWQS+SYFSDV+NLCWFLEPEFAK+++RLHK+VGNA+T+N++IVVGTGSTQLFQAAL
Sbjct: 109 VISGWQSMSYFSDVKNLCWFLEPEFAKQIIRLHKIVGNAVTDNYYIVVGTGSTQLFQAAL 168
Query: 181 YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNN 240
YALS +ASEP+SVVSAAP+YSSYPS+TD +KS LYKWAGDA FNKDGPYIELVTSPNN
Sbjct: 169 YALSPPNASEPMSVVSAAPFYSSYPSVTDFLKSGLYKWAGDANNFNKDGPYIELVTSPNN 228
Query: 241 PDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300
PDGS+RQ VVNRSG LVHD AYYWPQYT I+ PADHDLMLFTVSK+TGHAG R+GWALV
Sbjct: 229 PDGSIRQPVVNRSGENLVHDFAYYWPQYTPISSPADHDLMLFTVSKATGHAGMRLGWALV 288
Query: 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC--FFEFTNHQMS 358
KD EVAKKMT +IELNTIGVSKDSQ RAAK+L+V+SDS +P G+ + FF F++ M
Sbjct: 289 KDEEVAKKMTSFIELNTIGVSKDSQQRAAKILQVISDSYEPVGNPKQSGPFFHFSHSMME 348
Query: 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418
RWK LR AV++SGLFS+PE PS FC FLG+AF QPAFAWLKCE IEDC +FLK +KI
Sbjct: 349 ERWKALRSAVKQSGLFSLPEFPSSFCNFLGQAFGSQPAFAWLKCEGGIEDCGNFLKXHKI 408
Query: 419 LTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454
LTR+GKHFG SP+YVR+SMLDRDE++NLF +RLS +
Sbjct: 409 LTRNGKHFGASPEYVRVSMLDRDESFNLFTKRLSSL 444
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456934|ref|XP_002281408.1| PREDICTED: tryptophan aminotransferase-related protein 2 [Vitis vinifera] gi|297733729|emb|CBI14976.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/456 (67%), Positives = 372/456 (81%), Gaps = 14/456 (3%)
Query: 1 MAKITPLFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEKE 60
M K++ +FSL++ LV+SLALNV+LI R ++E E ++Q R++MA K
Sbjct: 17 MGKLSGVFSLRHFLVLSLALNVALISRVVYEGENWR-------EEQIRALMADASEKSA- 68
Query: 61 HVSERTHLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTI 120
HVS SPS S ++TST+I+ D GER+IN+DHGDPTMYE++WQ++GD TTI
Sbjct: 69 HVS--MSSPPPPSPSTPSSMAVTSTEIK--DDGERVINLDHGDPTMYERFWQQMGDITTI 124
Query: 121 VIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAAL 180
VI GWQS+SYFSDV+NLCWFLEPEFAK+++RLHK+VGNA+T+N++IVVGTGSTQLFQAAL
Sbjct: 125 VISGWQSMSYFSDVKNLCWFLEPEFAKQIIRLHKIVGNAVTDNYYIVVGTGSTQLFQAAL 184
Query: 181 YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNN 240
YALS +ASEP+SVVSAAP+YSSYPS+TD +KS LYKWAGDA FNKDGPYIELVTSPNN
Sbjct: 185 YALSPPNASEPMSVVSAAPFYSSYPSVTDFLKSGLYKWAGDANNFNKDGPYIELVTSPNN 244
Query: 241 PDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300
PDGS+RQ VVNRSG LVHD AYYWPQYT I+ PADHDLMLFTVSK+TGHAG R+GWALV
Sbjct: 245 PDGSIRQPVVNRSGENLVHDFAYYWPQYTPISSPADHDLMLFTVSKATGHAGMRLGWALV 304
Query: 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC--FFEFTNHQMS 358
KD EVAKKMT +IELNTIGVSKDSQ RAAK+L+V+SDS +P G+ + FF F++ M
Sbjct: 305 KDKEVAKKMTSFIELNTIGVSKDSQQRAAKILQVISDSYEPVGNPKQSGPFFHFSHSMME 364
Query: 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418
RWK LR AV++SGLFS+PE PS FC FLG+AF QPAFAWLKCE IEDC +FLK +KI
Sbjct: 365 ERWKALRSAVKQSGLFSLPEFPSSFCNFLGQAFGSQPAFAWLKCEGGIEDCGNFLKRHKI 424
Query: 419 LTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454
LTR+GKHFG SP+YVR+SMLDRDE++NLF +RLS +
Sbjct: 425 LTRNGKHFGASPEYVRVSMLDRDESFNLFTKRLSSL 460
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540565|ref|XP_002511347.1| Alliin lyase precursor, putative [Ricinus communis] gi|223550462|gb|EEF51949.1| Alliin lyase precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/454 (65%), Positives = 359/454 (79%), Gaps = 24/454 (5%)
Query: 1 MAKITPLFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEKE 60
MAK + FS++NLLV+SL++NVSL+ R E + N + F + Q+ + A
Sbjct: 1 MAKFSKAFSVRNLLVLSLSINVSLLVRVAFERHE-NGLTGFYMASQKEPLAA-------- 51
Query: 61 HVSERTHLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTI 120
TH SLSSS S++ + D G+R+IN+DHGDPTMYE++WQ++GDK TI
Sbjct: 52 ---HATHPSLSSS------STVAAGD------GDRVINLDHGDPTMYERFWQQMGDKATI 96
Query: 121 VIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAAL 180
VIPGWQ +SYFSD+ N+CWFLEPEFA+++VRLHKVVGNA+T +IVVGTGSTQL+QA L
Sbjct: 97 VIPGWQFMSYFSDIGNICWFLEPEFARQIVRLHKVVGNAVTAERYIVVGTGSTQLYQAVL 156
Query: 181 YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNN 240
YAL+ QDA EPISVV+AAPYYSSYP+ITDC+KS LYKWAGDA+ F K GP+IELVTSPNN
Sbjct: 157 YALAPQDADEPISVVTAAPYYSSYPTITDCLKSGLYKWAGDARSFEKKGPFIELVTSPNN 216
Query: 241 PDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300
PDG RQSV+NRS GILVHDLAYYWPQYT I+ PADHD+MLFTVSKSTGHAG RIGWALV
Sbjct: 217 PDGYARQSVLNRSEGILVHDLAYYWPQYTPISSPADHDIMLFTVSKSTGHAGMRIGWALV 276
Query: 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360
KD EVA+KM KYIELN+IGVSKDSQLRAAK+LKVVSDSC+ SG E FEF H ++ R
Sbjct: 277 KDREVAQKMIKYIELNSIGVSKDSQLRAAKILKVVSDSCESSGDSSESLFEFAYHLLAER 336
Query: 361 WKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILT 420
W+ LR AVQ +GLFS+P S FC +L R+FEPQPAFAWLKCE+ I+DC+ FL+ ++ILT
Sbjct: 337 WQLLREAVQHNGLFSLPSFSSGFCNYLERSFEPQPAFAWLKCEEPIKDCQEFLRSSRILT 396
Query: 421 RSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454
RSGKHFG P+YVRIS+LDRD+ NLF++RLS I
Sbjct: 397 RSGKHFGVGPQYVRISLLDRDDTMNLFIERLSNI 430
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461859|ref|XP_003601211.1| Alliin lyase [Medicago truncatula] gi|355490259|gb|AES71462.1| Alliin lyase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 294/458 (64%), Positives = 348/458 (75%), Gaps = 20/458 (4%)
Query: 1 MAKI-TPLFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEK 59
MAKI +FSL++ LV+SLALNVS I R ++ E + +SS + + +V
Sbjct: 1 MAKIPNTVFSLRHFLVLSLALNVSFILRMFYDGEVGHNNSSLNRAKANNNV--------- 51
Query: 60 EHVSERTHLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTT 119
H S R +S +SS S LT + RIIN+DHGDPT+YE++W++ GDK+T
Sbjct: 52 -HKS-RVVMSSTSSLKNSTCKDLTGSK-------NRIINLDHGDPTVYERFWRQTGDKST 102
Query: 120 IVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAA 179
I+IPGWQS+SYFSDV N+CWFLE EFAKEVVRLH+VVGNA+TE HIVVGTGS+QLF AA
Sbjct: 103 IIIPGWQSMSYFSDVSNICWFLEAEFAKEVVRLHRVVGNAVTEGRHIVVGTGSSQLFLAA 162
Query: 180 LYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPN 239
LYALS AS+PI+VV A+PYYSSYPS+TD +KS LYKWAGDA + KDGPYIELVTSPN
Sbjct: 163 LYALSPNHASQPINVVCASPYYSSYPSMTDYLKSGLYKWAGDADSYEKDGPYIELVTSPN 222
Query: 240 NPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWAL 299
NPDG VR+S VNRS G+LVHDLAYYWPQYT I+ P+DHDL LFTVSKSTGHAG RIGWAL
Sbjct: 223 NPDGHVRKSKVNRSQGLLVHDLAYYWPQYTPISSPSDHDLTLFTVSKSTGHAGMRIGWAL 282
Query: 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS-EDECFFEFTNHQMS 358
VKD EVAKKMTK+IELNTIGVSKDSQLRAAK+L VSDSC+ S E+E FF+F++ M+
Sbjct: 283 VKDKEVAKKMTKFIELNTIGVSKDSQLRAAKILSAVSDSCEQENSKENESFFKFSHKVMA 342
Query: 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418
RWKQLR V S LFS+ + FC F R EPQPAF WLKCE +EDCESFL+ + I
Sbjct: 343 NRWKQLREVVHHSELFSLSQFSPAFCNFFNRVLEPQPAFVWLKCEGNVEDCESFLRAHNI 402
Query: 419 LTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456
+TRSGKHFG SPKYVRIS+LD DEN+ F+ RLS I S
Sbjct: 403 ITRSGKHFGVSPKYVRISLLDTDENFTQFLDRLSTIQS 440
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513633|ref|XP_003525516.1| PREDICTED: tryptophan aminotransferase-related protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/458 (63%), Positives = 356/458 (77%), Gaps = 14/458 (3%)
Query: 1 MAKIT--PLFSLKNLLVVSLALNVSLIWRAMH-ESEKCNFDSSFSLQQQRRSVMAGCVLK 57
MAK+ PL SL++ LV+S+ALNVSLI R ++ ESEK + F L ++ +MA
Sbjct: 1 MAKLAVPPLLSLRHFLVLSIALNVSLILRTVYYESEKGS--KGFCLNKK---MMADADSD 55
Query: 58 EKEHVSERTHLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDK 117
+ H+ ++ L++SS+ SS + ST G E +IN+DHGDPT+YE++W++VGDK
Sbjct: 56 REGHLIHKSRLAMSST-----SSLVNSTRADHPGGRETVINLDHGDPTIYERFWRQVGDK 110
Query: 118 TTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQ 177
TTI+IPGWQSLSYFSD N+CWFLE EFA+EVVRLHKVVGNA+TE HIVVGTGS+QL
Sbjct: 111 TTIIIPGWQSLSYFSDGSNICWFLETEFAREVVRLHKVVGNAVTEGRHIVVGTGSSQLIL 170
Query: 178 AALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTS 237
AALYALSS DA+EPISVVSAAPYYSSYPS+ D KS LYKWAGDA+ F+K+GPYIELVTS
Sbjct: 171 AALYALSSPDAAEPISVVSAAPYYSSYPSMADYQKSGLYKWAGDAENFDKEGPYIELVTS 230
Query: 238 PNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGW 297
PNNPDG R+++VNRS G +HDLAYYWPQYT I+ P+DHDL LFTVSK+TGHAG RIGW
Sbjct: 231 PNNPDGHRRKAMVNRSQGQFIHDLAYYWPQYTPISSPSDHDLTLFTVSKTTGHAGMRIGW 290
Query: 298 ALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED-ECFFEFTNHQ 356
A+VKD EVAKKMTK+IE++TIGVSKDSQLRAAKVLK VSDSC+ S+D E FF + +
Sbjct: 291 AIVKDKEVAKKMTKFIEISTIGVSKDSQLRAAKVLKAVSDSCEQENSQDGESFFTHSYNI 350
Query: 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGN 416
M+ RWKQLR V+ LF++P+ FCTF G+ EPQPAF WLKCE +IEDCES L+ +
Sbjct: 351 MAQRWKQLRAVVEAGDLFTLPQFSPAFCTFFGQETEPQPAFIWLKCEGDIEDCESLLREH 410
Query: 417 KILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454
KI+ RSG+HFG SPKYVRISMLD DE + + RLS I
Sbjct: 411 KIVARSGRHFGASPKYVRISMLDTDETFIQLIDRLSAI 448
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507280|ref|XP_003522396.1| PREDICTED: tryptophan aminotransferase-related protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 293/458 (63%), Positives = 351/458 (76%), Gaps = 15/458 (3%)
Query: 1 MAKITPLFSLKNLLVVSLALNVSLIWR-AMHESEKCNFDSSFSLQQQRRSVMAGCVLKEK 59
MAK+ +FSL++ LV+SLALNVSL+ R MH+ + ++R + + E+
Sbjct: 1 MAKLPTMFSLRHFLVLSLALNVSLLLRLMMHQGAQ-------KAHKERTNSVT-----EE 48
Query: 60 EHVSERTHLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTT 119
H ++ + +SSS S S S+S + + G R+IN+DHGDPT YE++W++ GDK+T
Sbjct: 49 HHNIHKSRMVISSSSSSS-STSSFANSTSTTGGYNRVINLDHGDPTAYERFWRQTGDKST 107
Query: 120 IVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAA 179
I I GWQS+SYFSDV N+CWFLE EF +EVVRLH VVGNA+TE HIVVGTGS+QLF AA
Sbjct: 108 ITIQGWQSMSYFSDVTNICWFLEAEFGREVVRLHNVVGNAVTEGRHIVVGTGSSQLFLAA 167
Query: 180 LYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPN 239
LYALS D+ EPISVV A PYYSSYPS+TD +KS LYKW GDA+ + K+GPYIELVTSPN
Sbjct: 168 LYALSPTDSPEPISVVCATPYYSSYPSMTDHLKSGLYKWGGDAESYEKEGPYIELVTSPN 227
Query: 240 NPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWAL 299
NPDG VR+S VNRS G LVHDLAYYWPQYT I+ PADHDL LFTVSKSTGHAG RIGWAL
Sbjct: 228 NPDGHVRRSKVNRSQGFLVHDLAYYWPQYTPISAPADHDLTLFTVSKSTGHAGMRIGWAL 287
Query: 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS-EDECFFEFTNHQMS 358
VKD EVAKKMTK+IELNTIGVSKDSQLRAAKVL+ VSDS + S E E FF+F++ M+
Sbjct: 288 VKDQEVAKKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSWELGNSKESESFFKFSHKLMA 347
Query: 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418
RWKQLR+ V+ S LFS+P+ FCTF + EPQPAF WLKCE +EDCESFL+G+ I
Sbjct: 348 NRWKQLRLVVESSELFSLPKFSPAFCTFFNQVLEPQPAFVWLKCEGNVEDCESFLRGHNI 407
Query: 419 LTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456
LTRSG HFG SPKYVRISMLD DEN+N F+ RLS I+S
Sbjct: 408 LTRSGTHFGVSPKYVRISMLDTDENFNQFLDRLSAIMS 445
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440999|ref|XP_004138271.1| PREDICTED: tryptophan aminotransferase-related protein 2-like [Cucumis sativus] gi|449520579|ref|XP_004167311.1| PREDICTED: tryptophan aminotransferase-related protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 297/453 (65%), Positives = 361/453 (79%), Gaps = 20/453 (4%)
Query: 7 LFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEKEHVSERT 66
L SL+N V+SLALNVSLI RA++++EK + +S ++++ + V++
Sbjct: 3 LVSLRNFFVLSLALNVSLILRAINQNEKLHSGASMAVEKGAK-------------VAQMK 49
Query: 67 HLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQ 126
LS S SPS +S T T + G ER++N+DHGDPTMYE+YW+ +GDKTTIVIPGWQ
Sbjct: 50 FLSFPSLSSPSAASPETQTPL----GRERVVNLDHGDPTMYEQYWKPMGDKTTIVIPGWQ 105
Query: 127 SLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ 186
S+SYFSDV NLCWF+EPEFAK++VR+HKVVGNA+TE HIVVGTGS+QL AALYALS Q
Sbjct: 106 SMSYFSDVTNLCWFMEPEFAKQIVRIHKVVGNAVTEGRHIVVGTGSSQLLLAALYALSPQ 165
Query: 187 DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVR 246
D+S+PISVVS APYYSSYP +TDCVKS ++KWAGDAK F+KD PYIELVTSPNNPDG VR
Sbjct: 166 DSSKPISVVSTAPYYSSYPLMTDCVKSGIHKWAGDAKVFDKDEPYIELVTSPNNPDGFVR 225
Query: 247 QSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306
+VNR+GGILVHDLAYYWPQYT I+ PAD+DL LFTVSKSTGHAG RIGWALVKD+EVA
Sbjct: 226 HPMVNRTGGILVHDLAYYWPQYTPISTPADNDLSLFTVSKSTGHAGLRIGWALVKDVEVA 285
Query: 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED--ECFFEFTNHQMSTRWKQL 364
K+M K+IELNTIGVSKDSQLRAAKVL+VVSDSC+ +G + E FF F++ M+ RW+ L
Sbjct: 286 KRMIKFIELNTIGVSKDSQLRAAKVLEVVSDSCEQAGGSEYAESFFHFSHTVMTERWRLL 345
Query: 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE-IEDCESFLKGNKILTRSG 423
R AV++SG+FS+P+ C F QPAFAWLKC+Q+ +EDCESFL+G+KILTR G
Sbjct: 346 REAVKRSGIFSLPDFSPAHCNFFDNNLGTQPAFAWLKCDQDNVEDCESFLRGHKILTRGG 405
Query: 424 KHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456
KHFG KYVRISMLDR+E YNLFV+RLS+I S
Sbjct: 406 KHFGVGSKYVRISMLDREETYNLFVERLSQIRS 438
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518952|ref|XP_003528139.1| PREDICTED: tryptophan aminotransferase-related protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/451 (64%), Positives = 339/451 (75%), Gaps = 13/451 (2%)
Query: 7 LFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEKEHVSERT 66
+FSL++ V+SLALNVSLI R M Q Q++ V +EH +
Sbjct: 1 MFSLRHFFVLSLALNVSLILRLMMH------------QAQQKPHHNHSVTHHEEHNNNIH 48
Query: 67 HLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQ 126
+ S S S SS ST R+IN+DHGDPT YE++W++ GDK+TI IPGWQ
Sbjct: 49 KSRMLISSSSSTSSFANSTSTTGASSNNRVINLDHGDPTAYERFWRQTGDKSTITIPGWQ 108
Query: 127 SLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ 186
SLSYFSDV N+CWFLE EFA+EVVRLH VVGNA+TE HIVVGTGS+QLF AALYALS
Sbjct: 109 SLSYFSDVTNICWFLEAEFAREVVRLHNVVGNAVTEGRHIVVGTGSSQLFLAALYALSPI 168
Query: 187 DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVR 246
D+ EPISVV A+PYYSSYPS+T+ +KS LYKW GDA+ + K+GPYIELVTSPNNPDG VR
Sbjct: 169 DSPEPISVVCASPYYSSYPSMTNHLKSGLYKWGGDAESYEKEGPYIELVTSPNNPDGHVR 228
Query: 247 QSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306
+S VNRS G LVHDLAYYWPQYT I+ PADHDL LFTVSKSTGHAG RIGWALVKD EVA
Sbjct: 229 RSKVNRSQGFLVHDLAYYWPQYTPISAPADHDLTLFTVSKSTGHAGMRIGWALVKDQEVA 288
Query: 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS-EDECFFEFTNHQMSTRWKQLR 365
KKMTK+IELNTIGVSKDSQLRAAKVL+ VSDS + S E E FF+F++ M+ RWKQLR
Sbjct: 289 KKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSWEQGNSKESESFFKFSHKLMANRWKQLR 348
Query: 366 MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKH 425
+ V++S LFS+P+ FCTF + EPQPAF WLKCE +EDCESFL+G ILTRSG H
Sbjct: 349 LVVERSELFSLPKFSPAFCTFFNQVLEPQPAFVWLKCEGNVEDCESFLRGYNILTRSGIH 408
Query: 426 FGFSPKYVRISMLDRDENYNLFVQRLSKILS 456
FG SPKYVRISMLD DEN+N F+ RLS I S
Sbjct: 409 FGVSPKYVRISMLDTDENFNQFLDRLSAIQS 439
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520577|ref|XP_004167310.1| PREDICTED: tryptophan aminotransferase-related protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/449 (63%), Positives = 357/449 (79%), Gaps = 20/449 (4%)
Query: 7 LFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEKEHVSERT 66
+ SL+N V+SLALNVSLI RA++++EK ++ +S ++++ + V++ T
Sbjct: 3 VVSLRNFFVLSLALNVSLILRAVNQNEKLHYGASMAVEKGAK-------------VAKMT 49
Query: 67 HLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQ 126
LSL S PS ++ T T + + +R+IN+DHGDPTMYE+YW+ +GDKTTIVIPGWQ
Sbjct: 50 FLSLPSLSCPSAAAPETQTPLAT----DRVINLDHGDPTMYEQYWKPMGDKTTIVIPGWQ 105
Query: 127 SLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ 186
S+SYFSDV NLCWF+EPEFAK++VR+HKVVGNA+TE HIVVGTGS+QL AALYALS
Sbjct: 106 SMSYFSDVTNLCWFMEPEFAKQIVRIHKVVGNAVTEGRHIVVGTGSSQLLLAALYALSPL 165
Query: 187 DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVR 246
D+S PISVVSAAPYYSSYP +TDCVKS L+KW+GDAK F+KD PYIELVTSPNNPDG VR
Sbjct: 166 DSSNPISVVSAAPYYSSYPLMTDCVKSGLHKWSGDAKVFDKDEPYIELVTSPNNPDGFVR 225
Query: 247 QSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306
VVNR+GGILVHDLAYYWPQYT I+ PAD+DL LFTVSK TGHAG RIGWALVKD+EVA
Sbjct: 226 HGVVNRTGGILVHDLAYYWPQYTPISTPADNDLSLFTVSKCTGHAGLRIGWALVKDVEVA 285
Query: 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED--ECFFEFTNHQMSTRWKQL 364
K+M K+IELNTIGVSKDSQLRAAKVL+VVS+SC+ +G + E FF F++ M+ RW+ L
Sbjct: 286 KRMIKFIELNTIGVSKDSQLRAAKVLEVVSNSCEQAGGLEYAESFFHFSHALMTKRWRLL 345
Query: 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSG 423
R AV++SG+FS+P C F QPAFAWLKC++ +++DCE+FL+ +KILTRSG
Sbjct: 346 REAVKRSGIFSLPNFSPAHCNFFDNYLGTQPAFAWLKCDRNDVDDCENFLRRHKILTRSG 405
Query: 424 KHFGFSPKYVRISMLDRDENYNLFVQRLS 452
KHFG KYVRISMLDR+E YNLF++RL+
Sbjct: 406 KHFGVGSKYVRISMLDREETYNLFIERLT 434
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440997|ref|XP_004138270.1| PREDICTED: tryptophan aminotransferase-related protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/449 (63%), Positives = 357/449 (79%), Gaps = 20/449 (4%)
Query: 7 LFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRRSVMAGCVLKEKEHVSERT 66
+ SL+N V+SLALNVSLI RA++++EK + +S ++++ + V++ T
Sbjct: 3 VVSLRNFFVLSLALNVSLILRAINQNEKLHSGASMAVEKGAK-------------VAKMT 49
Query: 67 HLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQ 126
LSL S PS ++ T T + + +R+IN+DHGDPTMYE+YW+ +GDKTTIVIPGWQ
Sbjct: 50 FLSLPSLSCPSAAAPETQTPLAT----DRVINLDHGDPTMYEQYWKPMGDKTTIVIPGWQ 105
Query: 127 SLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ 186
S+SYFSDV NLCWF+EPEFAK++VR+HKVVGNA+TE HIVVGTGS+QL AALYALS
Sbjct: 106 SMSYFSDVTNLCWFMEPEFAKQIVRIHKVVGNAVTEGRHIVVGTGSSQLLLAALYALSPL 165
Query: 187 DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVR 246
D+S PISVVSAAPYYSSYP +TDCVKS L+KW+GDAK F+KD PYIELVTSPNNPDG VR
Sbjct: 166 DSSNPISVVSAAPYYSSYPLMTDCVKSGLHKWSGDAKVFDKDEPYIELVTSPNNPDGFVR 225
Query: 247 QSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306
VVNR+GGILVHDLAYYWPQYT I+ PAD+DL LFTVSK TGHAG RIGWALVKD+EVA
Sbjct: 226 HGVVNRTGGILVHDLAYYWPQYTPISTPADNDLSLFTVSKCTGHAGLRIGWALVKDVEVA 285
Query: 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED--ECFFEFTNHQMSTRWKQL 364
K+M K+IELNTIGVSKDSQLRAAKVL+VVS+SC+ +G + E FF F++ M+ RW+ L
Sbjct: 286 KRMIKFIELNTIGVSKDSQLRAAKVLEVVSNSCEQAGGLEYAESFFHFSHALMTKRWRLL 345
Query: 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSG 423
R AV++SG+FS+P+ C F QPAFAWLKC++ +++DCE+FL+ +KILTRSG
Sbjct: 346 REAVKRSGIFSLPDFSPAHCNFFDNNLGTQPAFAWLKCDRNDVDDCENFLRRHKILTRSG 405
Query: 424 KHFGFSPKYVRISMLDRDENYNLFVQRLS 452
KHFG KYVRISMLDR+E YNLF++RL+
Sbjct: 406 KHFGVGSKYVRISMLDREETYNLFIERLT 434
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 456 | ||||||
| TAIR|locus:2121999 | 440 | TAR2 "tryptophan aminotransfer | 0.791 | 0.820 | 0.653 | 3.6e-128 | |
| TAIR|locus:2026826 | 391 | TAA1 "tryptophan aminotransfer | 0.782 | 0.913 | 0.530 | 8.6e-104 | |
| TAIR|locus:2028010 | 388 | TAR1 "tryptophan aminotransfer | 0.778 | 0.914 | 0.525 | 1.6e-102 | |
| TAIR|locus:2009056 | 457 | AT1G34040 [Arabidopsis thalian | 0.771 | 0.770 | 0.367 | 3.8e-62 | |
| TAIR|locus:2009031 | 463 | AT1G34060 [Arabidopsis thalian | 0.767 | 0.755 | 0.336 | 6.4e-60 |
| TAIR|locus:2121999 TAR2 "tryptophan aminotransferase related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
Identities = 238/364 (65%), Positives = 280/364 (76%)
Query: 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEV 149
++ +RIIN+ GDPT+YE+YWQ+ G+ TT+VIPGWQSLSYFSD NLCWFLEPE AKE+
Sbjct: 72 EEDDDRIINLKFGDPTVYERYWQENGEVTTMVIPGWQSLSYFSDENNLCWFLEPELAKEI 131
Query: 150 VRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXITD 209
VR+HKVVGNA+T++ IVVGTGSTQL+QAALYALS D S PI ITD
Sbjct: 132 VRVHKVVGNAVTQDRFIVVGTGSTQLYQAALYALSPHDDSGPINVVSATPYYSTYPLITD 191
Query: 210 CVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYT 269
C+KS LY+W GDAK + +DGPYIELVTSPNNPDG +R+SVVN + GIL+HDLAYYWPQYT
Sbjct: 192 CLKSGLYRWGGDAKTYKEDGPYIELVTSPNNPDGFLRESVVNSTEGILIHDLAYYWPQYT 251
Query: 270 SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAA 329
IT PADHD+MLFT SKSTGHAG RIGWALVKD E A+KM +YIELNTIGVSKDSQLR A
Sbjct: 252 PITSPADHDVMLFTASKSTGHAGIRIGWALVKDRETARKMIEYIELNTIGVSKDSQLRVA 311
Query: 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389
KVLKVVSDSC + FF+ + M RWK L+ A + + FSVP+ SQ C F GR
Sbjct: 312 KVLKVVSDSC--GNVTGKSFFDHSYDAMYERWKLLKQAAKDTKRFSVPDFVSQRCNFFGR 369
Query: 390 AFEPQPAFAWLKCEQEIEDCESFLKGNK-ILTRSGKHFGFSPKYVRISMLDRDENYNLFV 448
FEPQPAFAW KCE+ I DCE FL+ K ILT+SGK+FG VRISMLDRD N+N+F+
Sbjct: 370 VFEPQPAFAWFKCEEGIVDCEKFLREEKKILTKSGKYFGDELSNVRISMLDRDTNFNIFL 429
Query: 449 QRLS 452
R++
Sbjct: 430 HRIT 433
|
|
| TAIR|locus:2026826 TAA1 "tryptophan aminotransferase of Arabidopsis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 192/362 (53%), Positives = 260/362 (71%)
Query: 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV 155
++N+DHGDPT YE+YW+K+GD+ T+ I G +SYFSD+ NLCWFLEPE + LH V
Sbjct: 24 VVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGV 83
Query: 156 VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXITDCVKSRL 215
VGNA TE+ +IVVGTGSTQL QAA++ALSS S+P+ T V+S +
Sbjct: 84 VGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGM 143
Query: 216 YKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVVNRSG---GILVHDLAYYWPQYTSIT 272
YKW GDA F+K GPYIELVTSPNNPDG++R++VVNR ++HD AYYWP YT IT
Sbjct: 144 YKWEGDAWGFDKKGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHYTPIT 203
Query: 273 YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVL 332
DHD+MLFT SK TGHAG+RIGWALVKD EVAKKM +YI +N+IGVSK+SQ+R AK+L
Sbjct: 204 RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKIL 263
Query: 333 KVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392
V+ ++CK S SE E FF++ M RW++LR V++S F++P+ P FC + G++ E
Sbjct: 264 NVLKETCK-SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLE 322
Query: 393 PQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452
PAFAWL ++E D S L+ +K+++R+G+ G K+VR+SML R++ +N+F++RL+
Sbjct: 323 SYPAFAWLGTKEET-DLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLA 381
Query: 453 KI 454
+
Sbjct: 382 NM 383
|
|
| TAIR|locus:2028010 TAR1 "tryptophan aminotransferase related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 189/360 (52%), Positives = 248/360 (68%)
Query: 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV 155
IIN+D GDPT +++YW K D+ T+VIP W +SYFSD +N+CWFLEPE K + LH
Sbjct: 25 IINLDQGDPTAFQEYWMKKKDRCTVVIPAWDLMSYFSDTKNVCWFLEPELEKAIKALHGA 84
Query: 156 VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXITDCVKSRL 215
+GNA TE +IVVGTGS+QL QAAL+ALSS +P+ ++S L
Sbjct: 85 IGNAATEERYIVVGTGSSQLCQAALFALSSLSEVKPVSIVAAVPYYSTYVEEASYLQSTL 144
Query: 216 YKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVVNR-SGGILVHDLAYYWPQYTSITYP 274
YKW GDA+ F+K GPYIELVTSPNNPDG +R+ VVNR GG ++HDLAYYWP YT IT
Sbjct: 145 YKWEGDARTFDKKGPYIELVTSPNNPDGIMREPVVNRREGGKVIHDLAYYWPHYTPITRR 204
Query: 275 ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKV 334
DHDLMLFT SK TGHAG+RIGWALVKD+EVAKKM Y+ +N+IGVSK+SQ RA +L
Sbjct: 205 QDHDLMLFTFSKITGHAGSRIGWALVKDIEVAKKMVHYLTINSIGVSKESQTRATTILNE 264
Query: 335 VSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394
++ +C+ ++ E FFE+ +M +RW++LR V+ F++P P FC F G+
Sbjct: 265 LTKTCR---TQSESFFEYGYEKMKSRWERLREVVESGDAFTLPNYPQDFCNFFGKTLSTS 321
Query: 395 PAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454
PAFAWL ++E D S LK K+LTR G G + +YVR+SML RD+++++ +QRL+ I
Sbjct: 322 PAFAWLGYKEE-RDLGSLLKEKKVLTRGGDRCGCNKRYVRVSMLSRDDDFDVSLQRLATI 380
|
|
| TAIR|locus:2009056 AT1G34040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 135/367 (36%), Positives = 210/367 (57%)
Query: 97 INVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV 156
++ + GDP E +W + +++ +V GW +SY + L F+ E K + +LH VV
Sbjct: 90 VDANSGDPLFLEPFWIRKAEESAVVESGWHRMSYTFNGYGL--FMSAELEKIIRKLHNVV 147
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIXXXXXXXXXXXXXXITDCVKSRLY 216
GNA+T+N I+ G G+TQL A+++ALS ++ P D S
Sbjct: 148 GNAVTDNRFIIFGAGATQLLAASVHALSQTNSLSPSRLVTSVPYYNLYKQQADFFNSTNL 207
Query: 217 KWAGDA---KRFNKDGPY---IELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTS 270
K+ GDA KR ++ IE+VTSPNNPDG ++++V++ +HD AYYWP ++
Sbjct: 208 KFEGDASAWKRSERNDDIKQVIEIVTSPNNPDGKLKRAVLDGPNVKYIHDYAYYWPYFSP 267
Query: 271 ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAK 330
IT AD DL LF++SK+TGHAG+R GWALVK+ V +KM YI L+++GVS+D+QLRA +
Sbjct: 268 ITRQADEDLSLFSLSKTTGHAGSRFGWALVKEKTVYEKMKIYISLSSMGVSRDTQLRALQ 327
Query: 331 VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390
+LKVV G+E F F + RW+ L S FS+ + ++C + +
Sbjct: 328 LLKVVIGD---GGNE---IFRFGYGTLKKRWEILNKIFSMSTRFSLETIKPEYCNYFKKV 381
Query: 391 FEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQ 449
E P++AW+KCE+ E DC K KI R+G+ FG ++VR+S++ ++++ +
Sbjct: 382 REFTPSYAWVKCERPEDTDCYEIFKAAKITGRNGEMFGSDERFVRLSLIRSQDDFDQLIA 441
Query: 450 RLSKILS 456
L K +S
Sbjct: 442 MLKKFVS 448
|
|
| TAIR|locus:2009031 AT1G34060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 124/368 (33%), Positives = 207/368 (56%)
Query: 97 INVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV 156
++ + GDP E +W + +++ I++ GW +SY + ++ E K + +LH VV
Sbjct: 91 VDANSGDPLFLEPFWMRQAERSAILVSGWHRMSYIYEDGT---YVSRELEKVIRKLHSVV 147
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPIXXXXXXXXXXXXXXITDCVKSR 214
GNA+T+N ++ G+G+TQL AA++ALS + S P + S
Sbjct: 148 GNAVTDNRFVIFGSGTTQLLAAAVHALSLTNSSVSSPARLLTSIPYYAMYKDQAEFFDSA 207
Query: 215 LYKWAGDAKRFNKDG------PYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQY 268
K+ G+A + + G IE+VTSPNNPDG ++++V++ +HD AYYWP +
Sbjct: 208 HLKFEGNASAWKQSGRNDNITQVIEVVTSPNNPDGKLKRAVLDGPNVKTLHDYAYYWPHF 267
Query: 269 TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRA 328
+ IT+P D DL LF++SK+TGHAG+R GW LVKD + +KM ++I L ++GVSK++QL
Sbjct: 268 SPITHPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDRFIRLTSMGVSKETQLHV 327
Query: 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388
++LKVV G+E F F + RW+ L S FS+ + ++C +
Sbjct: 328 LQLLKVVVGD---GGNE---IFSFGYGTVKKRWETLNKIFSMSTRFSLQTIKPEYCNYFK 381
Query: 389 RAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447
+ E P++AW+KCE+ E +C + KI R+G FG ++VR+S++ ++++
Sbjct: 382 KVREFTPSYAWVKCERPEDTNCYEIFRAAKITGRNGNVFGSEERFVRLSLIRSQDDFDQL 441
Query: 448 VQRLSKIL 455
+ L K++
Sbjct: 442 IAMLKKLV 449
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 456 408 0.00079 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 621 (66 KB)
Total size of DFA: 292 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.51u 0.09s 29.60t Elapsed: 00:00:02
Total cpu time: 29.51u 0.09s 29.60t Elapsed: 00:00:02
Start: Sat May 11 13:05:39 2013 End: Sat May 11 13:05:41 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q94A02 | TAR2_ARATH | 2, ., 6, ., 1, ., 2, 7 | 0.5894 | 0.9473 | 0.9818 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 456 | |||
| pfam04864 | 362 | pfam04864, Alliinase_C, Allinase | 0.0 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 4e-32 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 9e-16 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 3e-13 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 3e-10 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 4e-10 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 1e-06 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 2e-06 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 3e-04 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 7e-04 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 0.001 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 0.001 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 0.002 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 0.002 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 0.003 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 0.004 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 0.004 |
| >gnl|CDD|218297 pfam04864, Alliinase_C, Allinase | Back alignment and domain information |
|---|
Score = 531 bits (1370), Expect = 0.0
Identities = 192/364 (52%), Positives = 252/364 (69%), Gaps = 9/364 (2%)
Query: 97 INVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV 156
++D GDP E+YW + ++T ++I GW +SYFSD NL WFL PE + + RLH VV
Sbjct: 1 ADLDSGDPLFLEEYWMRHKERTAVLISGWHRMSYFSDEDNL-WFLSPELERAIKRLHGVV 59
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSR 214
GNA T++ +IV GTGSTQL QAA+YALS S P+ VV+AAPYYS Y T S+
Sbjct: 60 GNAATDDRYIVFGTGSTQLLQAAVYALSPNATPTSPPVKVVAAAPYYSVYKEQTSYFDSK 119
Query: 215 LYKWAGDAKRFNKD---GPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSI 271
YKW G+A + GP+IELVTSPNNPDG++R++V++ G +HDLAYYWP YT I
Sbjct: 120 GYKWEGNAAAYVNTDNPGPFIELVTSPNNPDGTLREAVID--GSKAIHDLAYYWPHYTPI 177
Query: 272 TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKV 331
TYPAD D+MLFT+SK TGHAG+R GWALVKD EVAKKM +YI NTIGVSK+SQLR K+
Sbjct: 178 TYPADEDIMLFTMSKYTGHAGSRFGWALVKDEEVAKKMVEYITKNTIGVSKESQLRTLKI 237
Query: 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAF 391
LKVV +CK FF+F +M RW++LR V +S FS+ +LPS++C + GR
Sbjct: 238 LKVVLATCKTESGTMGDFFDFGYEKMRERWEKLRELVSQSDRFSLQKLPSEYCNYFGRIR 297
Query: 392 EPQPAFAWLKCE-QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQR 450
EP PA+AWLKCE +E DC L+ KILTRSG+ FG +YVR+S++ ++++ ++R
Sbjct: 298 EPSPAYAWLKCEWEEDTDCYEVLRNGKILTRSGERFGADSRYVRLSLIKTQDDFDQLLER 357
Query: 451 LSKI 454
L +
Sbjct: 358 LKSM 361
|
Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulfoxide cysteine derivatives by alliinase (EC:4.4.1.4), whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system. Length = 362 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 74/340 (21%), Positives = 122/340 (35%), Gaps = 57/340 (16%)
Query: 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYS 202
PE + + G IVV G+ + L AL + V+ P Y
Sbjct: 39 PELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDE----VLVPDPTYP 94
Query: 203 SYPSIT-----DCVKSRLYKWAGD------AKRFNKDGPYIELVTSPNNPDGSV-----R 246
Y + + V L + G + + + +PNNP G+V
Sbjct: 95 GYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEEL 154
Query: 247 QSVV---NRSGGILVHDLAYYWPQYTSITYPA-------DHDLMLFTVSKSTGHAGTRIG 296
+ + + G +++ D AY Y PA + ++L + SK+ G G RIG
Sbjct: 155 EELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIG 214
Query: 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356
+ + E+ +++ K + T G S SQ AA L + E E +
Sbjct: 215 YLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALD-----------DGEEHLEELRER 263
Query: 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEI--EDCESFLK 414
R L A+++ G V + PS F F WL + E E L
Sbjct: 264 YRRRRDALLEALKELGPLVVVK-PSG-------GF-----FLWLDLPEGDDEEFLERLLL 310
Query: 415 GNKILTRSGKHFGFS-PKYVRISMLDRDENYNLFVQRLSK 453
++ R G FG +VR+S +E ++RL++
Sbjct: 311 EAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 9e-16
Identities = 67/333 (20%), Positives = 115/333 (34%), Gaps = 58/333 (17%)
Query: 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD--CVKSR 214
G + I+V G+ + A AL + E V+ P Y SY + K
Sbjct: 83 GLDVDPEEEIIVTAGAKEALFLAFLALLNPG-DE---VLIPDPGYPSYEAAVKLAGGKPV 138
Query: 215 LYKWAGDAKRFNKDGPYIE----------LVTSPNNPDGSV------RQ--SVVNRSGGI 256
+ F D +E ++ SPNNP G+V + + I
Sbjct: 139 PVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDII 198
Query: 257 LVHDLAYY------WPQYTSITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308
++ D Y + + D + + + SK+ G G RIGW + E+
Sbjct: 199 IISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAA 258
Query: 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV 368
+ K T +Q A L G + + E + R L A+
Sbjct: 259 LRKLKSYLTSCAPTPAQYAAIAALN---------GPQSDEVVEEMREEYRERRDLLVEAL 309
Query: 369 QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIED---CESFLKGNKILTRSGKH 425
+ G SV + P G AF + + K + ++ + L+ + G
Sbjct: 310 NEIGGLSVVKPPE------G-AF-----YLFPKIPELLDSEEFAKKLLEEAGVAVVPGSG 357
Query: 426 FG--FSPKYVRISMLDRDENYNLFVQRLSKILS 456
FG YVR+S+ +E ++RL++ L+
Sbjct: 358 FGEPPGEGYVRLSLATSEETLEEALRRLARFLA 390
|
Length = 393 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 72/337 (21%), Positives = 128/337 (37%), Gaps = 66/337 (19%)
Query: 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYS 202
E + + VV + +++VG GS +L + + A +V+ P +S
Sbjct: 60 RELRAALAEYYGVV-----DPENVLVGNGSDELIELLVRAF----VEPGDTVLIPEPTFS 110
Query: 203 SYPSITD-----CVKSRLYKWAGDAK---RFNKDGPYIELVTSPNNPDGS------VRQS 248
Y VK L ++ D +D + + +PNNP G+ +R
Sbjct: 111 MYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRAL 170
Query: 249 V-VNRSGGILVHDLAYY-WPQYTSITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDME 304
+ GG++V D AY + +S+ ++L T SK+ G AG R+G+A+ + E
Sbjct: 171 LEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIA-NPE 229
Query: 305 VAKKMTKYIE---LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361
+ + K +++ + A L D + E + ++
Sbjct: 230 LIAALNKVRPPFNVSSP-----ALAAAIAAL------------RDADYLEESVERIREER 272
Query: 362 KQLRMAVQKSGLFSVPELPSQ--FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKIL 419
++L A++ GLF V PSQ F A A + L IL
Sbjct: 273 ERLYAALKALGLFGVF--PSQANFVLV---RVPDAEAAALAE----------ALLKKGIL 317
Query: 420 TRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456
R G P Y+RI++ +EN + + L ++L
Sbjct: 318 VRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLK 353
|
Length = 356 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 67/307 (21%), Positives = 112/307 (36%), Gaps = 71/307 (23%)
Query: 166 IVVGTGSTQLFQAALYALSSQDASEP-ISVVSAAPYYSSYPSITDC--VKSRLYKWAGD- 221
I++G GS ++ + + A EP +V+ P YS Y + D
Sbjct: 74 ILLGNGSDEIIELLIRAFL-----EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDG 128
Query: 222 ------AKRFNKDGPYIELVTSPNNPDGS---------VRQSVVNRSGGILVHDLAY--Y 264
D P + + SPNNP G+ V + ++V D AY +
Sbjct: 129 QLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERT--PEDALVVVDEAYGEF 186
Query: 265 WPQYTSITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSK 322
+ +++ A++ ++L T+SK+ G AG RIG+A+ E+ + K +S+
Sbjct: 187 SGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA-EIIDALNKVRA--PFNLSR 243
Query: 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFT----NHQMSTRWKQLRMAVQKSGLFSVPE 378
+Q A L D+ F E T N + + L+ K V
Sbjct: 244 LAQAAAIAAL------------RDDDFIEKTVEEINAERERLYDGLK----KLPGLEV-- 285
Query: 379 LPSQ--FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRIS 436
PS F P+ A A + L I+ R + P +RI+
Sbjct: 286 YPSDANFVLI----RFPRDADALFEA----------LLEKGIIVRDLNSYPGLPNCLRIT 331
Query: 437 MLDRDEN 443
+ R+EN
Sbjct: 332 VGTREEN 338
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 65/346 (18%), Positives = 117/346 (33%), Gaps = 69/346 (19%)
Query: 143 PEFAKEVVRLHKVVGNAITENH--HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPY 200
PE + + + + + +V G+G+ +A + L + + I + AP
Sbjct: 44 PELREALAKFLGR-SPVLKLDREAAVVFGSGAGANIEALI-FLLRLNPGDAI--LVPAPT 99
Query: 201 YSSYP-SITDC-VKSRLYKWAGDAKRFNKD-------------GPYIELVTSPNNPDGSV 245
Y SY + Y + F+ D G + L TSP+NP G+V
Sbjct: 100 YPSYIRIFRLAGGEVVRYPLY-SSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTV 158
Query: 246 ------RQ--SVVNRSGGILVHDLAY---------YWPQYTSITYPADHDLMLFTVSKST 288
+ + +L+ D AY + + L++ + SK+
Sbjct: 159 ATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLA-EGPNLLVVGSFSKAF 217
Query: 289 GHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348
G AG R+G+ L V ++ K + L+AA +SD
Sbjct: 218 GLAGWRVGYILGNA-AVISQLRKLARPFYS----STHLQAA-AAAALSDP-----LLVAS 266
Query: 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIED 408
E ++ R LR ++ +GL LPSQ F F + E
Sbjct: 267 ELEEMRQRIKERRDYLRDGLEAAGL---SVLPSQ------AGF-----FLLTGLDPEAAL 312
Query: 409 --CESFLKGNKILTRSGKHFGFSPKYVRISMLDRD-ENYNLFVQRL 451
+ L+ + G FG ++RI++ E ++ +
Sbjct: 313 ALAQVLLEEVGVYVTPGSSFGGPG-WLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 23/186 (12%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRL-------YK 217
+I VG GS ++ + A ++ S A YS Y I V+ + Y
Sbjct: 78 NIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFA-MYSVYSKIAGAVEIPVKLKEDYTYD 136
Query: 218 WAGDAKRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYY-WPQYTSI 271
K K P + + +PNNP GSV + ++ +S GI+V D AY+ + T +
Sbjct: 137 VGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIV 196
Query: 272 TYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLR 327
+ + ++L T+SK+ G AG R+G+A+ + + KY+ L + ++ SQ+
Sbjct: 197 DVINEFENLIVLRTLSKAFGLAGLRVGYAVANE-----NILKYLNLVKSPYNINSLSQVI 251
Query: 328 AAKVLK 333
A KVL+
Sbjct: 252 ALKVLR 257
|
Length = 351 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 52/270 (19%), Positives = 88/270 (32%), Gaps = 54/270 (20%)
Query: 194 VVSAAPYYSS---YPSITDCVKSRLYKWAGDAKR-FNKDGPYI-ELVTS---------PN 239
VV P Y S T C W A R F D + L+T P+
Sbjct: 96 VVVVDPAYHSLSHLAVATGCEVRP---WPLLAVRGFRPDLDALRALLTPRTRAVVVNFPH 152
Query: 240 NPDGSVRQS--------VVNRSGGILVHD-----LAYYWPQYTSITYPADHDLMLFTVSK 286
NP G+ RSG +L+ D L + P + D + T+SK
Sbjct: 153 NPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAPPLPDPSALYDRVISFGTLSK 212
Query: 287 STGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346
+ G G R+GW + ++ ++ + + T+ +S +L A ++ P +E
Sbjct: 213 AFGLPGLRVGWCVGPA-DLLAELVRLRDYTTLSLSPLVELLAEVAVEHADALIGPRLAEA 271
Query: 347 ECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEI 406
+ +R + G+ + P P ++
Sbjct: 272 RANRRRLLDWAAAHPDVVRCTPPEGGVAAFPRFPGH---------------------ADV 310
Query: 407 ED-CESFLKGNKILTRSGKHFGFSPKYVRI 435
D C L + +L G FG +R+
Sbjct: 311 TDLCRRLLARHGVLLVPGSCFGA-ADRMRL 339
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 44/239 (18%)
Query: 216 YKWAGDAKRFNKDG-PYIELVTSPNNPDGS------VRQ--SVVNRSGGILVHDLAY--Y 264
YK + + N D + + P NP GS +++ + + L+HD Y +
Sbjct: 143 YKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDF 202
Query: 265 WP-QYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKD 323
+ Y +H + ++ SK G AG RIG A+V ++ + + + +N +G +
Sbjct: 203 AREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIG-AVVATPDLIEVVKSIV-INDLGTNVI 260
Query: 324 SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ- 382
+Q A LKV K + F N ++ ++ AV + +P PS
Sbjct: 261 AQEAAIAGLKV-----KDEWIDRIRRTTFKNQKL------IKEAVDEIEGVFLPVYPSHG 309
Query: 383 ---FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG--FSPKYVRIS 436
+P ED +L KI R G + F +Y+R+S
Sbjct: 310 NMMVIDISEAGIDP-------------EDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS 355
|
Length = 380 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 31/180 (17%)
Query: 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYY 201
+ E ++ L + H++ GS++ A+ A +S A +V+A P Y
Sbjct: 76 DLELEDDLRTLFAAQEGLPAD--HVMAYAGSSEPLNYAVLAFTSPTAG----LVTADPTY 129
Query: 202 SSYPSITDCVKSRLYK------WAGDAKRFNKDGP-----YIELVTSPNNPDGSV----- 245
+ D + + K A D K P YI +PNNP G+V
Sbjct: 130 EAGWRAADAQGAPVAKVPLRADGAHDVKAMLAADPNAGLIYI---CNPNNPTGTVTPRAD 186
Query: 246 -RQSVVNR-SGGILVHDLAY-YWPQYTS-ITYPADHD--LMLFTVSKSTGHAGTRIGWAL 299
+ N+ +G +L+ D AY ++ S + A ++L T SK G AG R+G A
Sbjct: 187 IEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAA 246
|
Length = 370 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 98/320 (30%)
Query: 165 HIVVGTGST----QLFQAA-------LYALSSQDASEPISVVSAA-----PYYSSY---- 204
H+ VG GS QL QA ++A S +A + V+ A P +
Sbjct: 76 HVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDL 135
Query: 205 ----PSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGS-VRQSVVNR-----SG 254
+ITD ++RL V +PNNP G+ V + + R
Sbjct: 136 DAMAAAITD--RTRLI-----------------FVCNPNNPTGTVVTPAELARFLDAVPA 176
Query: 255 GILVH-DLAYYWPQYT-------SITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDME 304
+LV D AY +Y + DH ++L T SK+ G AG R+G+A V E
Sbjct: 177 DVLVVLDEAYV--EYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYA-VGHPE 233
Query: 305 VAKKMTK-YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363
V + K + V+ +Q AA + + +EDE E + ++ R +
Sbjct: 234 VIAALRKVAVPF---SVNSLAQ--AAAIASL--------AAEDE-LLERVDAVVAER-DR 278
Query: 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSG 423
+R A++ +G ++VP Q F WL + D + ++ R
Sbjct: 279 VRAALRAAG-WTVP--------------PSQANFVWLPLGERTADFAAAAAEAGVVVRP- 322
Query: 424 KHFGFSPKYVRISMLDRDEN 443
F+ + VR+++ +EN
Sbjct: 323 ----FAGEGVRVTIGAPEEN 338
|
Length = 352 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 48/249 (19%), Positives = 80/249 (32%), Gaps = 76/249 (30%)
Query: 238 PNNPDGS-------------VRQSVVNRSGGILVHDLAYY----WPQY-TSITYPADHD- 278
PNNP G+ V V+ +V D AY Y + A
Sbjct: 163 PNNPTGTYLPAEEVERFLAGVPPDVL------VVLDEAYAEYVRRKDYEDGLELVAKFPN 216
Query: 279 -LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI----GVSKDSQLRAAKVLK 333
++ T SK+ G AG R+G+ + E+ LN + V+ + A L
Sbjct: 217 VVVTRTFSKAYGLAGLRVGYG-IAPPEIID------ALNRVRQPFNVNSLALAAAVAALD 269
Query: 334 VVSDSCKPSGSEDECF----FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ--FCTFL 387
D+ F M L + + GL +PS F
Sbjct: 270 ------------DDAFVEKSRALNAEGM----AWLTEFLAELGL---EYIPSVGNFILVD 310
Query: 388 GRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447
F+ ++ + L ++ R +G P +RI++ +EN F
Sbjct: 311 ---FDD---------GKDAAEAYQALLKRGVIVRPVAGYGL-PNALRITIGTEEEN-RRF 356
Query: 448 VQRLSKILS 456
+ L + L+
Sbjct: 357 LAALKEFLA 365
|
Length = 367 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 67/234 (28%)
Query: 235 VTSPNNPDG-------------SVRQSVVNRSGGILVHDLAYY-------WPQYTSITYP 274
+ +PNNP G SV V ++V D AYY +P +
Sbjct: 157 ICNPNNPTGTYVNHEELLSFLESVPSHV------LVVLDEAYYEYVTAEDYPDTLPLLEK 210
Query: 275 ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE-LNTI----GVSKDSQLRAA 329
++ ++L T SK+ G A R+G+ +A + IE LN ++ +Q A
Sbjct: 211 YENLIVLRTFSKAYGLAALRVGYG------IASEE--LIEKLNIARPPFNTTRIAQYAAI 262
Query: 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389
L ED+ F + + + +Q ++ GLF P
Sbjct: 263 AAL------------EDQAFLKECVEKNAEGLEQYYAFCKEYGLFYYPS----------- 299
Query: 390 AFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDEN 443
Q F ++ ++ + L + RSG GF P VRI++ +++N
Sbjct: 300 ----QTNFIFVDTGRDANELFEALLKKGYIVRSGAALGF-PTGVRITIGLKEQN 348
|
Length = 359 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 49/210 (23%), Positives = 76/210 (36%), Gaps = 68/210 (32%)
Query: 165 HIVVGTGSTQ----LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVK-------- 212
++V TG+ Q F A L E V+ APY+ SYP + VK
Sbjct: 93 QVIVTTGAKQALYNAFMALL-----DPGDE---VIIPAPYWVSYP---EMVKLAGGVPVF 141
Query: 213 -----SRLYKWAGDAKRFNKDGPYIE----------LVTSPNNPDGSV--RQSV-----V 250
+K + +E ++ SP+NP G+V + + V
Sbjct: 142 VPTGEENGFKLTVEQ---------LEAAITPKTKALILNSPSNPTGAVYSPEELEAIADV 192
Query: 251 NRSGGILV------HDLAYYWPQYTSITYPADHDLMLFT-----VSKSTGHAGTRIGWAL 299
I V L Y ++TSI + +L T SK+ G R+G+A
Sbjct: 193 AVEHDIWVLSDEIYEKLVYDGAEFTSIASLSP-ELRDRTITVNGFSKAYAMTGWRLGYAA 251
Query: 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRAA 329
E+ K M+K +T + +Q AA
Sbjct: 252 GPK-ELIKAMSKLQSHSTSNPTSIAQ-YAA 279
|
Length = 393 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 52/235 (22%)
Query: 236 TSPNNPDGSVR-----QSVVNRSGGILVHDLAYYWPQYTSITYPA---DHD--LMLFTVS 285
+PNNP G++ + ++ + ++ D AY ++ Y ++D ++ T S
Sbjct: 165 CTPNNPTGNLIPEEDIRKILESTDALVFVDEAYV--EFAEYDYTPLALEYDNLIIGRTFS 222
Query: 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKV--LKVVSDSCKPSG 343
K G AG RIG+ V + + +RA L +S + +
Sbjct: 223 KVFGLAGLRIGYGFVPE-WLIDYY----------------MRAKTPFSLTRLSQAAAIAA 265
Query: 344 SEDECFFE-FTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402
D+ + E H + +R + L + F V PS+ F+ P A
Sbjct: 266 LSDKEYIEKSIEHGIKSR-EYLYNELP----FKV--YPSE-ANFVLVDVTPMTA------ 311
Query: 403 EQEIEDCESFLKGNKILTRSGKHF-GFSPKYVRISMLDRDENYNLFVQRLSKILS 456
E CE LK ++ R F G Y+R+S+ +EN F++ L +I+
Sbjct: 312 ---KEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIGTFEEN-ERFLEILKEIVE 361
|
Length = 361 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 22/126 (17%)
Query: 234 LVT-SPNNPDGSV------RQSVVN---RSGGIL-VHDLAYYWPQYTSITY--PA----- 275
+VT SPNNP G V R VN GI + D AY + Y + + P
Sbjct: 164 IVTISPNNPTGVVYPEALLRA--VNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGS 221
Query: 276 -DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKV 334
+H + L+++SK+ G A RIG+ +V + + + + K + I SQ A L+V
Sbjct: 222 GNHTISLYSLSKAYGFASWRIGY-MVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQV 280
Query: 335 VSDSCK 340
C+
Sbjct: 281 GKSYCQ 286
|
Length = 389 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 234 LVTSPNNPDGSV-----RQSVVN--RSGGIL-----VHDLAYY-----WPQYTSITYPAD 276
+ SPNNP G ++++ R G+ V++ YY P + I P D
Sbjct: 163 FINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDD 222
Query: 277 HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKV 331
+ + + SK+ G R+GW LV + + + K IE NT V++ Q RAA
Sbjct: 223 RIIFVNSFSKNWAMTGWRLGW-LVAPPALGQVLEKLIEYNTSCVAQFVQ-RAAVA 275
|
Length = 382 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 456 | |||
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.97 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.97 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.96 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.96 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.95 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.95 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.95 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.95 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.95 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.95 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.95 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.95 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.94 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.94 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.94 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.94 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.94 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.94 | |
| PLN02721 | 353 | threonine aldolase | 99.94 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.94 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.94 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.93 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.93 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.93 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.92 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.92 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.92 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.92 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.92 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.92 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.91 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.91 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.91 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.91 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.91 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.91 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.91 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.91 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.91 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.91 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.91 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.91 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.91 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.91 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.91 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.9 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.9 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.9 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.9 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.9 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.9 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.9 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.9 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.9 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.9 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.89 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.89 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.89 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.89 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.89 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.89 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.89 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.89 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.89 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.89 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.89 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.88 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.88 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.88 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.88 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.88 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.88 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.88 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.88 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.87 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.87 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.87 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.87 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.86 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.86 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.86 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.86 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.86 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.85 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.85 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.85 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.85 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.85 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.84 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.84 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.84 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.84 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.84 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.84 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.84 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.83 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.83 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.83 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.83 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.83 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.83 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.83 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.82 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.82 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.82 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.81 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.81 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.8 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.8 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.79 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.79 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.79 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.78 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.78 | |
| PLN02651 | 364 | cysteine desulfurase | 99.77 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.76 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.76 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.75 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.75 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.74 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.74 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.74 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.74 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.74 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.73 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.72 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.72 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.72 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.72 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.72 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.72 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.71 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.71 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.71 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.7 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.69 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.69 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.69 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.69 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.68 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.68 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.68 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.68 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.68 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.67 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.67 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.67 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.67 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.66 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.66 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.66 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.65 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.65 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.65 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.65 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.65 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.64 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.64 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.64 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.63 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.62 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.62 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.62 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.62 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.62 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.62 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.62 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.61 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.61 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.61 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.61 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.61 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.61 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.61 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.6 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.6 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.6 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.58 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.57 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.57 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.57 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.57 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.56 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.55 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.55 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.55 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.54 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.51 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.5 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.5 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.49 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.49 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.48 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.48 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.47 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.43 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.42 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.41 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.39 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.37 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.37 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.37 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.37 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.36 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.36 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.35 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.34 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.31 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.29 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.29 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.27 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.24 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.24 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.22 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.21 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.21 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.17 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.16 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.12 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.11 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.09 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.09 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.08 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.04 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.03 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.01 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.98 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.96 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 98.96 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 98.93 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 98.9 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.86 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.84 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.84 | |
| PF04863 | 56 | EGF_alliinase: Alliinase EGF-like domain; InterPro | 98.83 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.82 | |
| PLN02880 | 490 | tyrosine decarboxylase | 98.78 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.78 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 98.78 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.77 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.76 | |
| PLN02263 | 470 | serine decarboxylase | 98.72 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.66 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.58 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.56 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.45 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.34 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 98.31 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.27 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.25 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 97.93 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 97.92 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.72 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 97.57 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 97.38 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.36 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 97.32 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 97.26 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.25 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 97.23 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.11 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 96.84 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 96.38 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 95.26 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 94.36 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 92.06 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 89.48 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 88.09 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 86.82 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 86.08 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 84.39 |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=425.30 Aligned_cols=357 Identities=60% Similarity=1.052 Sum_probs=287.4
Q ss_pred EEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHH
Q 012785 97 INVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLF 176 (456)
Q Consensus 97 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al 176 (456)
+|+++|||.+.+++|.+..+....++++|++|+|+.+..+. |+++++|.+.|.++|+.+||++++...|++++|++|++
T Consensus 1 ~d~d~GDP~~~E~yW~~~~~~~avvi~gw~rMSY~~~~~~~-~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~ 79 (363)
T PF04864_consen 1 ADADSGDPTFFEPYWRRHGDSSAVVIPGWHRMSYFSDSSNG-WFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLF 79 (363)
T ss_dssp EEESS---GGGHHHHCCTHHHH-EEE-TTTT-SSSS-TTSS-TTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHH
T ss_pred CCcCCCCchhhHHHHHhcCcceeEEEeccccceeEEecCCc-eeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHH
Confidence 68999999999999999988888889999999988866554 89999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC--CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccC---CCeEEEEcCCCCCCcccchHHhh
Q 012785 177 QAALYALSSQ--DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKD---GPYIELVTSPNNPDGSVRQSVVN 251 (456)
Q Consensus 177 ~~~~~~l~~~--gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~---~~~~i~v~~P~NPtG~~~~~l~~ 251 (456)
++++.+|... ..++|.+|+...|+|+.|..+.+.+..+.+.|..|...+... .+-+.+|++||||.|.+...+++
T Consensus 80 ~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~Gda~~~~~~~~~~~~IElVTSPNNPDG~lr~~V~~ 159 (363)
T PF04864_consen 80 NAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAGDASNFKNSDNPSPYIELVTSPNNPDGQLREAVLN 159 (363)
T ss_dssp HHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEEECCCGTT-S-CCGEEEEEESS-TTT------SST
T ss_pred HHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccccccHHhhccCCCCCCeEEEEeCCCCCcccccchhcC
Confidence 9999999877 567889999999999999999999999999999998888432 46788999999999999988999
Q ss_pred hcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHH
Q 012785 252 RSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKV 331 (456)
Q Consensus 252 ~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~ 331 (456)
..+..+|.|-+|+||+|+|++...|++|+++|+||..|++|.|+||++++|++++++|.++...++.|+|..+|..++++
T Consensus 160 g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~ki 239 (363)
T PF04864_consen 160 GSSGKVIHDLAYYWPHYTPITAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKI 239 (363)
T ss_dssp TTEEEEEEE-TT-STTTS---S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHH
T ss_pred CCCcceeeeeeeecccccccCCCCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-ccHHHHH
Q 012785 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-QEIEDCE 410 (456)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~ 410 (456)
|+.+.+++... ....++++.-++.+++||+.|.+.++....|+++....++|+||+++.++.++|.|++|+ ++.++|+
T Consensus 240 Lk~v~~~~~~~-~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~ 318 (363)
T PF04864_consen 240 LKVVLDGYGTE-KGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCY 318 (363)
T ss_dssp HHHHHHHCCHH-TTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHH
T ss_pred HHHHHhcccCC-CCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccccHH
Confidence 99988775310 000158999999999999999999999999999999999999999999999999999997 4568999
Q ss_pred HHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 411 SFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 411 ~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..|+++||..+.|..||.++.|+|||+..++++++.++++|.+++
T Consensus 319 ~~l~~~~I~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~lv 363 (363)
T PF04864_consen 319 AVLREAKIITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLSKLV 363 (363)
T ss_dssp HHHHCTTEEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHCCH
T ss_pred HHHHhCCcccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999889999999999998764
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=413.96 Aligned_cols=328 Identities=22% Similarity=0.291 Sum_probs=276.9
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
.++|+|++|+|++++|+.+.+... .++..+.. .|++..| .++||++|++++.+ +|....++++|++|+|+
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~-~a~~~~~~---~Y~~~~G-----~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga 98 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAI-EALEEGGT---HYTPSAG-----IPELREAIAEKYKRRYGLDVDPEEEIIVTAGA 98 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHH-HHHhcccC---CCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCH
Confidence 579999999999999987776433 22333221 4558899 49999999999965 56566665669999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc---------ccccc---CCCeEEEEcCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA---------KRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~---------~~l~~---~~~~~i~v~~P~N 240 (456)
+++|.+++.+++++|| +|++++|+|+.|...+..+|++++.++++. +.++. .++|++++++|||
T Consensus 99 ~~al~~~~~a~~~pGD----eVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~N 174 (393)
T COG0436 99 KEALFLAFLALLNPGD----EVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNN 174 (393)
T ss_pred HHHHHHHHHHhcCCCC----EEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCC
Confidence 9999999999999999 999999999999999999999988777543 33322 2789999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|||.++++ +|++++++||.||+|.+..| .++. ...+++|+++||||+++++|||+||+++++++
T Consensus 175 PTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~ 254 (393)
T COG0436 175 PTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEE 254 (393)
T ss_pred CcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHH
Confidence 99999994 78999999999999986332 3322 22478999999999999999999999996688
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCCcc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPSQF 383 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~ 383 (456)
+++.+.+.+.....+++.+.|.++..+|+ ... . .++++.+++.+++||+.+.+.|.+.+++++.. |.|++
T Consensus 255 l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~---~~~-----~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~ 325 (393)
T COG0436 255 LIAALRKLKSYLTSCAPTPAQYAAIAALN---GPQ-----S-DEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAF 325 (393)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHhc---Ccc-----c-hHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeE
Confidence 99999999998999999999999999998 221 1 35788888999999999999999998888888 77998
Q ss_pred cccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 384 CTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 384 ~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +.+++.++|+++||.|.||+.||. +.++||||++.+.+++++++++|.++++
T Consensus 326 -------------Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~ 390 (393)
T COG0436 326 -------------YLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLA 390 (393)
T ss_pred -------------EEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHH
Confidence 99999963 467888899999999999999995 5799999999888999999999998763
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=381.60 Aligned_cols=326 Identities=17% Similarity=0.222 Sum_probs=274.4
Q ss_pred CCeEEecCCCCCC---CchhHhhhcccccccccCccc-cccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEE
Q 012785 94 ERIINVDHGDPTM---YEKYWQKVGDKTTIVIPGWQS-LSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVV 168 (456)
Q Consensus 94 ~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~ 168 (456)
..+++|+.|.|+. +...|.... ...+...... ..+|.+..| .++||++|++++. ..|..+. +++|++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~--~~~~~~~~~~~~~~y~~~~G-----~~~LR~~ia~~l~~~~g~~~~-~~~Iii 160 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRAL--ARVLRNYGASLALQYGPTAG-----LPELREAIAAYLLARRGISCE-PEQIVI 160 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHH--HHHHhhcchhhhhcCCCCCC-----cHHHHHHHHHHHHHhcCCccC-cCeEEE
Confidence 6789999998764 333333321 1112111122 457888889 5999999999997 7788886 469999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccC---------CCeEEEE-cCC
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKD---------GPYIELV-TSP 238 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~---------~~~~i~v-~~P 238 (456)
|+|++++++++++.+++||| .|++++|+|+....+++.+|++++++++|.+++..+ ++|++++ ++.
T Consensus 161 T~G~q~al~l~~~~l~~pGd----~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~ 236 (459)
T COG1167 161 TSGAQQALDLLLRLLLDPGD----TVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTF 236 (459)
T ss_pred eCCHHHHHHHHHHHhCCCCC----EEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCC
Confidence 99999999999999999999 999999999999999999999999999998887542 4676655 566
Q ss_pred CCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC--CCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 239 NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 239 ~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
|||||.+|+. +|++++++|||||.|.+..+. ++. +..++|||++||||++. ||+|+||+++| +
T Consensus 237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~-PglRlG~vv~p-~ 314 (459)
T COG1167 237 QNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVVAP-P 314 (459)
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc-cccceeeeeCC-H
Confidence 9999999993 899999999999999864332 122 34589999999999997 99999999998 9
Q ss_pred HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC--CccccCCCC
Q 012785 304 EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG--LFSVPELPS 381 (456)
Q Consensus 304 ~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g 381 (456)
++++++...+...+.+++.+.|.+++..|. ++ ++++|++++++.|++|++.+.+.|++.. ...+..|.|
T Consensus 315 ~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~---~G------~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~g 385 (459)
T COG1167 315 ELIEKLLRLKQAADLGPSSLSQAALAAFLL---SG------HYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEG 385 (459)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHH---cC------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCc
Confidence 999999999999999999999999999998 44 3699999999999999999999999973 688899999
Q ss_pred cccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeec-CCCCCC---CCCeEEEEecC-ChhHHHHHHHHHHhh
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRS-GKHFGF---SPKYVRISMLD-RDENYNLFVQRLSKI 454 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~p-g~~fg~---~~~~iRis~~~-~~e~i~~~l~~L~~~ 454 (456)
|+ |+|+++++ +...+.+.+.++||.+.| |..|.. ..+++|++|+. +++++++++++|.++
T Consensus 386 G~-------------flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~ 452 (459)
T COG1167 386 GL-------------FLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAAL 452 (459)
T ss_pred eE-------------EEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 99 99999976 577889999999999999 888854 35699999998 889999999999887
Q ss_pred h
Q 012785 455 L 455 (456)
Q Consensus 455 l 455 (456)
+
T Consensus 453 ~ 453 (459)
T COG1167 453 L 453 (459)
T ss_pred H
Confidence 5
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=377.45 Aligned_cols=324 Identities=15% Similarity=0.204 Sum_probs=262.7
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCc-cCCCceEEE
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNA-ITENHHIVV 168 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~-~~~~~~I~~ 168 (456)
..++++|+|+.|+|++++++.+.+... ..+ . ....|++..| .++||++||+|++. +|.. ++++++|++
T Consensus 26 ~~~~~~i~l~~~~p~~~~~~~~~~~~~-~~~-~---~~~~Y~~~~G-----~~~lr~~ia~~~~~~~g~~~~~~~~~i~i 95 (396)
T PRK09147 26 PADLPPISLSIGEPKHPTPAFIKDALA-ANL-D---GLASYPTTAG-----LPALREAIAAWLERRYGLPALDPATQVLP 95 (396)
T ss_pred ccCCCeEecCCCCCCCCCCHHHHHHHH-HHh-h---hhcCCCCCCC-----CHHHHHHHHHHHHHHhCCCcCCccceEEE
Confidence 346789999999999887765554322 111 1 2457999999 59999999999965 4766 654459999
Q ss_pred ccCHHHHHHHHHHHhcCC---CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEE
Q 012785 169 GTGSTQLFQAALYALSSQ---DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIEL 234 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~---gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~ 234 (456)
|+|+++++.+++++++++ || .|++++|+|+.|...++..|++++.+++|.+ .++. .++++++
T Consensus 96 t~G~~~al~~~~~~l~~~~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~ 171 (396)
T PRK09147 96 VNGSREALFAFAQTVIDRDGPGP----LVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLF 171 (396)
T ss_pred CCChHHHHHHHHHHHcCCCCCCC----EEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEE
Confidence 999999999999999999 88 9999999999999999999999998876532 2322 2678999
Q ss_pred EcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC----CCC----------CCCCCcEEEecCccccCCCC
Q 012785 235 VTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT----SIT----------YPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 235 v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~----~~~----------~~~~~~i~i~S~SK~~g~~G 292 (456)
++|||||||.+++. +|++++++||+||+|.+..+. +.. ...+++|+++||||.|++||
T Consensus 172 l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G 251 (396)
T PRK09147 172 VCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG 251 (396)
T ss_pred EcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc
Confidence 99999999999983 688999999999999863221 110 12468999999999999999
Q ss_pred ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 293 TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 293 ~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
+|+||++++ +++++++.+.......+++.+.|.++.+.+. + ++++++.++.++++++.+.+.|++.
T Consensus 252 lRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~L~~~- 317 (396)
T PRK09147 252 LRSGFVAGD-AALLKKFLLYRTYHGCAMPPAVQAASIAAWN---D---------EAHVRENRALYREKFDAVTPILAPV- 317 (396)
T ss_pred ceeeeecCC-HHHHHHHHHHhhhcccCCCHHHHHHHHHHhc---c---------hhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999997 9999999887766677899999999887775 1 5688999999999999999999874
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-------CCCeEEEEecCChhHH
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF-------SPKYVRISMLDRDENY 444 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~-------~~~~iRis~~~~~e~i 444 (456)
+.+..|+|++ |+|++++. +.+.+..+++++||.+.||..|+. +.+++||+|+.+++++
T Consensus 318 -~~~~~p~~g~-------------f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l 383 (396)
T PRK09147 318 -LDVQLPDAGF-------------YLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAEC 383 (396)
T ss_pred -cCCCCCCeeE-------------EEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHH
Confidence 5566777877 99999974 334445556789999999999862 2579999998889999
Q ss_pred HHHHHHHHhhhC
Q 012785 445 NLFVQRLSKILS 456 (456)
Q Consensus 445 ~~~l~~L~~~l~ 456 (456)
++++++|++++.
T Consensus 384 ~~~l~rl~~~~~ 395 (396)
T PRK09147 384 VEAAERIVDFCR 395 (396)
T ss_pred HHHHHHHHHHhc
Confidence 999999998763
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=382.14 Aligned_cols=321 Identities=18% Similarity=0.189 Sum_probs=261.1
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
..+++|+.|.|+..+++.+.+.. .........|+++.| .++||+++++|++... .++++|++|+|++
T Consensus 85 ~~~i~L~~g~p~~~~~p~~~~~~-----~~~~~~~~~Y~~~~g-----~~~lr~~ia~~~~~~~---~~~~~Iiit~G~~ 151 (431)
T PRK15481 85 TPLHDLAGGNPDPQRLPDLSRYF-----ARLSRTPRLYGDAPV-----SPELHAWAARWLRDDC---PVAFEIDLTSGAI 151 (431)
T ss_pred chhhhhhcCCCChhHhHHHHHHH-----HHhhhhhhhcCCcCC-----CHHHHHHHHHHHhhcc---CCcCeEEEecCcH
Confidence 35789999999887655433221 111112346999998 5999999999987521 1346999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccc-----c---CCCeEEEEc-CCCCCCcc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFN-----K---DGPYIELVT-SPNNPDGS 244 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~-----~---~~~~~i~v~-~P~NPtG~ 244 (456)
++|.+++++++++|| .|++++|+|+.|...++..|++++.+++|.+++. . .++++++++ |||||||.
T Consensus 152 ~al~~~~~~l~~pgd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~ 227 (431)
T PRK15481 152 DAIERLLCAHLLPGD----SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQGARAVILTPRAHNPTGC 227 (431)
T ss_pred HHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCc
Confidence 999999999999999 9999999999999999999999999887654442 1 256777776 99999999
Q ss_pred cchH--------Hhhhc-CcEEEeeecCCCCCC---CC-CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH
Q 012785 245 VRQS--------VVNRS-GGILVHDLAYYWPQY---TS-ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK 311 (456)
Q Consensus 245 ~~~~--------l~~~~-~~~iI~De~y~~~~~---~~-~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~ 311 (456)
+++. +|+++ +++||+||+|.+..+ .+ +....+++|+++||||+|| ||+|+||++++ +++++.+..
T Consensus 228 ~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRiG~~i~~-~~~~~~~~~ 305 (431)
T PRK15481 228 SLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-PDLRLAFVASD-SATSARLRL 305 (431)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-CCceeEEEeCC-HHHHHHHHH
Confidence 9993 67888 999999999985322 12 2233468999999999999 99999999997 999999987
Q ss_pred HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccC
Q 012785 312 YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAF 391 (456)
Q Consensus 312 ~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~ 391 (456)
.......++|.+.|.++..+|+ ++ .++++++++++.++++++.+.+.|++.+ +.+..|.||+
T Consensus 306 ~~~~~~~~~s~~~q~a~~~~l~---~~------~~~~~l~~~~~~~~~~r~~~~~~L~~~~-~~~~~p~gg~-------- 367 (431)
T PRK15481 306 RLNSGTQWVSHLLQDLVYACLT---DP------EYQARLAQARLFYAQRRQKLARALQQYG-IAIPSPGDGL-------- 367 (431)
T ss_pred HHhccccCCCHHHHHHHHHHHh---Cc------cHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccccCCCeE--------
Confidence 7665567789999999999998 44 2467899999999999999999999874 5666677887
Q ss_pred CCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecC-ChhHHHHHHHHHHhhhC
Q 012785 392 EPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLD-RDENYNLFVQRLSKILS 456 (456)
Q Consensus 392 ~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~-~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.+.+.+.+.|.++||.++||+.|+. ..+++||+++. +++++++++++|++++.
T Consensus 368 -----f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 368 -----NLWLPLDTDSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred -----EEEEECCCCHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 99999976566777778899999999999964 24689999986 78999999999998863
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=375.99 Aligned_cols=327 Identities=17% Similarity=0.232 Sum_probs=258.3
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..+.++|+|+.|+|++++++.+.+... ..+... ....|++..| .++||++||+|+.. +|..+.++++|++|
T Consensus 27 ~~~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~G-----~~~lr~aia~~~~~~~g~~~~~~~~I~it 98 (388)
T PRK07366 27 AAGKELIDLSLGSSDLPAPAHALEAIA-QSLHDP--STHGYLLFHG-----TLDFREAAAQWYEQRFGLAVDPETEVLPL 98 (388)
T ss_pred hcCCCeEEeCCCCCCCCCCHHHHHHHH-HHHhCc--ccCCCCCCCC-----CHHHHHHHHHHHHHhhCCcCCCcCeEEEC
Confidence 356789999999999887665544322 111111 1235888888 59999999999954 57666543379999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v~~P 238 (456)
+|+++++.+++++++.+|| +|++++|+|+.|...++..|++++.+++|.+ .+.. .++++++++||
T Consensus 99 ~Gs~~al~~~~~~l~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p 174 (388)
T PRK07366 99 IGSQEGTAHLPLAVLNPGD----FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYP 174 (388)
T ss_pred CCcHHHHHHHHHHhCCCCC----EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCC
Confidence 9999999999999999999 9999999999999999999999998877643 2211 25789999999
Q ss_pred CCCCcccchH--------HhhhcCcEEEeeecCCCCCC------CCCCC---CCCCcEEEecCccccCCCCceEEEEEEe
Q 012785 239 NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY------TSITY---PADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 239 ~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~------~~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
|||||.+++. +|++++++||+||+|.+..+ .++.. ..+++|+++||||+||+||+|+||++++
T Consensus 175 ~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~ 254 (388)
T PRK07366 175 HNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGN 254 (388)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCC
Confidence 9999999993 78889999999999986322 12221 2246899999999999999999999996
Q ss_pred CHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 302 DMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
+++++++.+.+.....+.++..|.++.+.+. +. ++++++.++.++++++.+.+.|++++ +.+..|.|
T Consensus 255 -~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~---~~--------~~~l~~~~~~~~~~r~~l~~~L~~~~-~~~~~p~~ 321 (388)
T PRK07366 255 -AQLIQALRQVKAVVDFNQYRGILNGAIAALT---GP--------QATVQQTVQIFRQRRDAFINALHQIG-WPVPLPEA 321 (388)
T ss_pred -HHHHHHHHHHHhhcccCCCHHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCe
Confidence 9999999988776666654444555555554 22 67899999999999999999999875 56666777
Q ss_pred cccccccccCCCCCceEEeecCc----cHHHH-HHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ----EIEDC-ESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~----~~~~~-~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++ |+|+++++ +...+ ..+++++||.++||+.|+. ..+++||+++.+++++++++++|++++
T Consensus 322 g~-------------f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 322 TM-------------YVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred eE-------------EEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 77 99999964 23444 4556789999999999974 468999999888999999999999864
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=375.59 Aligned_cols=325 Identities=17% Similarity=0.264 Sum_probs=267.1
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
..++|+|+.|+|++++++.+.+... ..+..+ ...|++..| .++||++++++++. +|....++++|++|+|
T Consensus 53 ~~~~i~l~~G~P~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~G-----~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G 123 (413)
T PLN00175 53 KHGAINLGQGFPNFDGPDFVKEAAI-QAIRDG---KNQYARGFG-----VPELNSAIAERFKKDTGLVVDPEKEVTVTSG 123 (413)
T ss_pred cCCeEecCCCCCCCCCCHHHHHHHH-HHHhcC---CCCcCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 3578999999999887766554322 222222 247999999 59999999999964 5666654347999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NP 241 (456)
+++++.+++.+++++|| +|++++|+|+.+...++..|++++.++++. +.++. .++++++++|||||
T Consensus 124 ~~~al~~~~~~l~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NP 199 (413)
T PLN00175 124 CTEAIAATILGLINPGD----EVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNP 199 (413)
T ss_pred HHHHHHHHHHHhCCCCC----EEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCC
Confidence 99999999999999999 999999999999999999999998877653 33332 36789999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCCC----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
||.++++ +|++++++||+||+|.+..+ .++. ...+++|+++||||.|++||+|+||++++ ++++
T Consensus 200 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~-~~l~ 278 (413)
T PLN00175 200 TGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAP-PHLT 278 (413)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeC-HHHH
Confidence 9999982 68899999999999985322 1222 23578999999999999999999999997 9999
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+.+.+......++++.+.|.++.++|+ ++ +.++++.++.++++++.+.+.|++.+ +.+..|+|++
T Consensus 279 ~~l~~~~~~~~~~~s~~~Q~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~g~~--- 343 (413)
T PLN00175 279 WGVRQAHSFLTFATATPMQWAAVAALR---AP--------ESYYEELKRDYSAKKDILVEGLKEVG-FKVYPSSGTY--- 343 (413)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHh---CC--------HHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeE---
Confidence 999988877789999999999999997 33 57899999999999999999999875 6777888888
Q ss_pred ccccCCCCCceEEeecC--c--cHHHH-HHHHHhCCEEeecCCCCCC----CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 387 LGRAFEPQPAFAWLKCE--Q--EIEDC-ESFLKGNKILTRSGKHFGF----SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~--~--~~~~~-~~~l~~~gI~v~pg~~fg~----~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++ + +...+ ..+++++||.+.||+.|+. +.++|||+|+.+++++++++++|+++++
T Consensus 344 ----------f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 344 ----------FVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLK 412 (413)
T ss_pred ----------EEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 8999873 2 23344 4555688999999999953 3579999998899999999999998864
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=371.64 Aligned_cols=327 Identities=17% Similarity=0.234 Sum_probs=262.4
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+..+++|+.|+|+...|+....... ..+... ....|++..| .++||++||+|++. +|..+.++++|++|+
T Consensus 31 ~~~~~~~l~~g~p~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~G-----~~~lR~~ia~~l~~~~~~~~~~~~~I~it~ 102 (403)
T PRK08636 31 AGEDIIDFSMGNPDGPTPQHIIDKLC-ESAQKP--KTHGYSVSKG-----IYKLRLAICNWYKRKYNVDLDPETEVVATM 102 (403)
T ss_pred cCCCEEEcCCcCCCCCCCHHHHHHHH-HHhcCC--ccCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCeEEECC
Confidence 45678999999999776543333211 111111 2357999899 59999999999965 577765433899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc---ccc---------------cCCCeE
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK---RFN---------------KDGPYI 232 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~---~l~---------------~~~~~~ 232 (456)
|+++++.+++++++++|| +|++++|+|+.+...++..|++++.++++.+ +++ ..++++
T Consensus 103 G~~~al~~~~~~l~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~ 178 (403)
T PRK08636 103 GSKEGYVHLVQAITNPGD----VAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKY 178 (403)
T ss_pred ChHHHHHHHHHHhCCCCC----EEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceE
Confidence 999999999999999999 9999999999999999999999988765321 121 135789
Q ss_pred EEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCC---CCCCcEEEecCccccCCCCceEE
Q 012785 233 ELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITY---PADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~---~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
++++|||||||.+++. +|++++++||+||+|.+..+ .++.. ..+++|+++||||.||+||+|+|
T Consensus 179 i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG 258 (403)
T PRK08636 179 VVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVG 258 (403)
T ss_pred EEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceee
Confidence 9999999999999993 78999999999999985322 22222 23567889999999999999999
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
|++++ +++++.+.+.......+++.+.|.++..+++ +. +++++++++.++++++.+.+.|++.+ +.+
T Consensus 259 ~iv~~-~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~ 325 (403)
T PRK08636 259 FVVGN-KKLVGALKKIKSWLDYGMFTPIQVAATIALD---GD--------QSCVEEIRETYRKRRDVLIESFANAG-WEL 325 (403)
T ss_pred eeeCC-HHHHHHHHHHHHHhcccCChHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHHHCC-Ccc
Confidence 99996 9999999988776678888999998887665 22 67899999999999999999999875 667
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc-----cHHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHH
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ-----EIEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQ 449 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~ 449 (456)
..|.||+ |+|+++++ +...+. .+++++||.+.||..|+. .++++||+++.++++++++++
T Consensus 326 ~~p~~g~-------------~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~ 392 (403)
T PRK08636 326 QKPRASM-------------FVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAAR 392 (403)
T ss_pred cCCCcce-------------EEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHH
Confidence 7788888 99999974 134444 557789999999999975 468999999888999999999
Q ss_pred HHHhhhC
Q 012785 450 RLSKILS 456 (456)
Q Consensus 450 ~L~~~l~ 456 (456)
+|+++++
T Consensus 393 rl~~~l~ 399 (403)
T PRK08636 393 NIKKFLK 399 (403)
T ss_pred HHHHHHH
Confidence 9998863
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=370.55 Aligned_cols=323 Identities=17% Similarity=0.277 Sum_probs=261.2
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+..+|||+.|+|++++++++.+... ..+... ....|+ +.| .++||++||+|++. +|..+.++++|++|+
T Consensus 30 ~~~~~i~l~~g~p~~~~~~~~~~~~~-~~~~~~--~~~~y~-~~G-----~~~lr~aia~~~~~~~g~~~~~~~~I~it~ 100 (399)
T PRK07681 30 AGHKMIDLSIGNPDMPPADFVREEMV-HTANQK--ESYGYT-LSG-----IQEFHEAVTEYYNNTHNVILNADKEVLLLM 100 (399)
T ss_pred cCCCeEEeCCCCCCCCCCHHHHHHHH-HHHhcc--ccCCCC-CCC-----cHHHHHHHHHHHHHHhCCCCCCCCeEEECC
Confidence 45688999999999877766554322 111111 112254 367 59999999999964 576665337999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v~~P~ 239 (456)
|+++++.+++.+++++|| +|++++|+|+.|...++..|++++.+++|.+ .++. .++++++++|||
T Consensus 101 G~~~al~~~~~~~~~~Gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~ 176 (399)
T PRK07681 101 GSQDGLVHLPMVYANPGD----IILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPG 176 (399)
T ss_pred CcHHHHHHHHHHhCCCCC----EEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCC
Confidence 999999999999999999 9999999999999999999999998877543 2321 267899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
||||.++++ +|++++++||+||+|.+..+ .++. ...+++|+++||||.||+||+|+||++++ +
T Consensus 177 NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~-~ 255 (399)
T PRK07681 177 NPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGN-E 255 (399)
T ss_pred CCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecC-H
Confidence 999999993 68899999999999985322 1221 23468999999999999999999999996 9
Q ss_pred HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcc
Q 012785 304 EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQF 383 (456)
Q Consensus 304 ~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~ 383 (456)
++++++.+.+....++++.+.|.++..+|+ ++ ++++++.++.++++++.+.+.|++.+ +.+..|.|++
T Consensus 256 ~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~~g~ 323 (399)
T PRK07681 256 EIVRALTQFKSNTDYGVFLPIQKAACAALR---NG--------AAFCEKNRGIYQERRDTLVDGFRTFG-WNVDKPAGSM 323 (399)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeee
Confidence 999999988877788999999999999997 33 57889999999999999999999874 6666677777
Q ss_pred cccccccCCCCCceEEeecCc--cHHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHh
Q 012785 384 CTFLGRAFEPQPAFAWLKCEQ--EIEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 384 ~~~~~~~~~~~~~f~~~~~~~--~~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
|+|++++. +...+. .+++++||.++||..|+. +++++||+++.+++++++++++|++
T Consensus 324 -------------f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 324 -------------FVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred -------------EEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 99999964 344444 455559999999999975 4689999998788999999999987
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=371.27 Aligned_cols=326 Identities=14% Similarity=0.221 Sum_probs=262.0
Q ss_pred CCCCeEEecCCCCCC-Cc-hhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPTM-YE-KYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~-~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~ 168 (456)
.+++.|+|+.|+|+. .+ +.+.... ...+... ....|++..| .++||++|++++.. +|..+.++++|++
T Consensus 37 ~~~~~i~l~~g~~~~~~p~~~~~~~~--~~~~~~~--~~~~Y~~~~G-----~~~LR~aia~~l~~~~g~~~~~~~~I~i 107 (405)
T PRK06207 37 LPGRPVDFSHGDVDAHEPTPGAFELF--SAGVERG--GVQAYTEYRG-----DADIRELLAARLAAFTGAPVDAADELII 107 (405)
T ss_pred CCCCceecCCcCCCCCCCCHHHHHHH--HHHHhcC--CCccCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCCEEE
Confidence 456789999999883 23 3333321 1112221 1246998888 59999999999965 4766653379999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----------cccccc---CCCeEEE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----------AKRFNK---DGPYIEL 234 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----------~~~l~~---~~~~~i~ 234 (456)
|+|+++++.+++.+++++|| +|++++|+|+.+...++..|.+++.+++| .+.++. .++++++
T Consensus 108 t~Ga~~al~~~~~~l~~~Gd----~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~ 183 (405)
T PRK06207 108 TPGTQGALFLAVAATVARGD----KVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFL 183 (405)
T ss_pred eCCcHHHHHHHHHHhcCCCC----EEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEE
Confidence 99999999999999999999 99999999999999999999999877654 233332 3578999
Q ss_pred EcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEE
Q 012785 235 VTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 235 v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l 298 (456)
++|||||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||+|++||+|+||+
T Consensus 184 l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~i 263 (405)
T PRK06207 184 FSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVA 263 (405)
T ss_pred ECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEE
Confidence 99999999999982 67889999999999986322 2222 23578999999999999999999999
Q ss_pred EEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 012785 299 LVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378 (456)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 378 (456)
+++ +++++++.+.......+.+.+.|.++..+|+ ++ ..++++.++.++++++.+.+.|++++.+.+..
T Consensus 264 i~~-~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~---~~--------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ 331 (405)
T PRK06207 264 FGS-PAIIDRMEKLQAIVSLRAAGYSQAVLRTWFS---EP--------DGWMKDRIARHQAIRDDLLRVLRGVEGVFVRA 331 (405)
T ss_pred EcC-HHHHHHHHHHHhHhccCCCHHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHhcCCCceecC
Confidence 997 9999999998877788889999999999987 32 35677788888999999999998875677777
Q ss_pred CCCcccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHh
Q 012785 379 LPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
|+|++ |+|++++. +...+.+.+ +++||.+.||+.|+. .++++||+|+.+++++++++++|++
T Consensus 332 p~gg~-------------fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~ 398 (405)
T PRK06207 332 PQAGS-------------YLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQ 398 (405)
T ss_pred CCeeE-------------EEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 88887 99999964 345566655 478999999999974 4789999998888999999999998
Q ss_pred hh
Q 012785 454 IL 455 (456)
Q Consensus 454 ~l 455 (456)
++
T Consensus 399 ~l 400 (405)
T PRK06207 399 LI 400 (405)
T ss_pred HH
Confidence 76
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=369.30 Aligned_cols=322 Identities=17% Similarity=0.229 Sum_probs=263.1
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~ 172 (456)
+.+|||+.|+|++++++.+.+... ..... ....|+++.| .++||++|++|+. .+|.... +++|++|+|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~-~~~~~---~~~~Y~~~~G-----~~~lr~~ia~~~~~~~~~~~~-~~~i~it~G~ 98 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAF-EDAKK---GHTRYTDSGG-----DVELIEEIIKYYSKNYDLSFK-RNEIMATVGA 98 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHH-HHHhc---CCCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCC-hhhEEEcCCh
Confidence 468999999999876544432211 11111 2357999999 5999999999995 4566665 5799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc---CCCeEEEEcCCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~---~~~~~i~v~~P~NP 241 (456)
++++.+++.+++++|| +|++++|+|+.+...++..|.+++.++. |.+.++. .+++++++++||||
T Consensus 99 ~~al~~~~~~~~~~gd----~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NP 174 (384)
T PRK06348 99 CHGMYLALQSILDPGD----EVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNP 174 (384)
T ss_pred HHHHHHHHHHhcCCCC----EEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCC
Confidence 9999999999999999 9999999999999999999999887764 2333332 36789999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCCC----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||++|+||+|+||++++ ++++
T Consensus 175 tG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~-~~~~ 253 (384)
T PRK06348 175 TGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAP-DYII 253 (384)
T ss_pred CCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecC-HHHH
Confidence 9999983 68899999999999986322 2222 22578999999999999999999999997 9999
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+.+........++++.+.|.++..+|. +. ++++++.++.+++|++.+.+.|+.++.+++..|+|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~--- 319 (384)
T PRK06348 254 ETAKIINEGICFSAPTISQRAAIYALK---HR--------DTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSI--- 319 (384)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeE---
Confidence 999988877788999999999999887 22 6788999999999999999999987666777888888
Q ss_pred ccccCCCCCceEEeecCc---cHHHHHHH-HHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 387 LGRAFEPQPAFAWLKCEQ---EIEDCESF-LKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~---~~~~~~~~-l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++. +.+.+.+. ++++||.+.||+.|+. +++++||+++.+++++++++++|+++
T Consensus 320 ----------~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 320 ----------YAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred ----------EEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 89999862 34555554 5678999999999975 46899999987899999999999875
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=373.33 Aligned_cols=328 Identities=17% Similarity=0.229 Sum_probs=257.1
Q ss_pred cCCCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCce
Q 012785 91 DGGERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHH 165 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~ 165 (456)
..++++|+|++|+|+ +.+++.+.+... .++..+. ...|++..| .++||++||+|++. ++..+. +++
T Consensus 63 ~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~-~~~~~~~--~~~Y~~~~G-----~~~lR~aiA~~~~~~~~~~~~-~~~ 133 (462)
T PLN02187 63 DVNKTILPLGHGDPSVYPCFRTCIEAEDAVV-DVLRSGK--GNSYGPGAG-----ILPARRAVADYMNRDLPHKLT-PED 133 (462)
T ss_pred CCCCCeEECCCCCCCCCCCCCCCHHHHHHHH-HHHhCCC--CCCCCCCCC-----hHHHHHHHHHHHHHhcCCCCC-ccc
Confidence 446789999999998 333433333211 2222221 246888888 59999999999964 465554 679
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc---CCCeEEE
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK---DGPYIEL 234 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~---~~~~~i~ 234 (456)
|++|+|++++|.+++.+++++|| +|++++|+|+.|...++..|++++.+++ |.+.++. .++++++
T Consensus 134 I~it~G~~~al~~~~~~l~~pGd----~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~ 209 (462)
T PLN02187 134 IFLTAGCNQGIEIVFESLARPNA----NILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMV 209 (462)
T ss_pred EEEeCCHHHHHHHHHHHhcCCCC----EEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEE
Confidence 99999999999999999999999 9999999999999999999999886654 3344432 3578999
Q ss_pred EcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCC--CCCCcEEEecCccccCCCCceEEEEE
Q 012785 235 VTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITY--PADHDLMLFTVSKSTGHAGTRIGWAL 299 (456)
Q Consensus 235 v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~--~~~~~i~i~S~SK~~g~~G~RiG~l~ 299 (456)
++|||||||.++++ +|++++++||+||+|.+..+ .++.. ...++|+++||||.|++||+|+||++
T Consensus 210 i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v 289 (462)
T PLN02187 210 VINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIA 289 (462)
T ss_pred EeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEE
Confidence 99999999999983 67889999999999986332 22221 12469999999999999999999999
Q ss_pred EeCHH----HHHHHHHHHhhccC--cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 300 VKDME----VAKKMTKYIELNTI--GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 300 ~~~~~----~~~~l~~~~~~~~~--~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
+++++ +++.+...+..... +++.+.|.++.++|+ +. .++++++.++.++++++.+.+.|++++.
T Consensus 290 ~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~---~~-------~~~~l~~~~~~l~~~r~~l~~~L~~~~~ 359 (462)
T PLN02187 290 LNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILE---KA-------DKNFFAKKNKILKHNVDLVCDRLKDIPC 359 (462)
T ss_pred ecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHh---cC-------cHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 85443 34566666554444 558999999999997 32 2689999999999999999999998764
Q ss_pred cc-ccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHH
Q 012785 374 FS-VPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENY 444 (456)
Q Consensus 374 ~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i 444 (456)
.. +..|+|++ |+|++++. +.+.+.++++++||.++||+.|+. +++|||+|+.+++.+
T Consensus 360 ~~~~~~P~gg~-------------fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~-~~~iRis~~~~~e~l 425 (462)
T PLN02187 360 VVCPKKPESCT-------------YLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGL-KNWMRITIGVEAHML 425 (462)
T ss_pred CcCCCCCCEeE-------------EEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCC-CCeEEEEeCCCHHHH
Confidence 43 34566776 89997741 235567788999999999999984 799999998889999
Q ss_pred HHHHHHHHhhh
Q 012785 445 NLFVQRLSKIL 455 (456)
Q Consensus 445 ~~~l~~L~~~l 455 (456)
++++++|++++
T Consensus 426 ~~al~rL~~~l 436 (462)
T PLN02187 426 EDALERLKGFC 436 (462)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=368.53 Aligned_cols=322 Identities=16% Similarity=0.250 Sum_probs=259.5
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCc--cCCCceEEE
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNA--ITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~--~~~~~~I~~ 168 (456)
.+..+++|+.|+|++.+++.+.+..... ......|+++.| .++||+++|+|+.. +|.. +.++++|++
T Consensus 26 ~~~~~i~l~~~~p~~~~~~~~~~a~~~~-----~~~~~~Y~~~~G-----~~~lr~aia~~~~~~~~~~~~~~~~~~i~i 95 (393)
T TIGR03538 26 ASKPPIALSIGEPKHPTPAFVLEALREN-----LHGLSTYPTTKG-----LPELRQAIARWLERRFDLPTGVDPERHVLP 95 (393)
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHH-----hhccCCCCCCCC-----CHHHHHHHHHHHHHhhCCcccCCCCceEEE
Confidence 4678999999999998777666542211 112356999999 59999999999954 4655 333358999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcE--EEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPIS--VVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELV 235 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~--Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v 235 (456)
|+|+++++.+++++++++|| + |++++|+|+.|...++..|++++.++.+.+ .++. .+++++++
T Consensus 96 t~Ga~~al~~~~~~l~~~gd----~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l 171 (393)
T TIGR03538 96 VNGTREALFAFAQAVINPGQ----APLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFV 171 (393)
T ss_pred CCCcHHHHHHHHHHHcCCCC----cceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEE
Confidence 99999999999999999998 5 999999999999999999999988776432 2322 36789999
Q ss_pred cCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC------CC----C----CCCCCcEEEecCccccCCCCc
Q 012785 236 TSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------SI----T----YPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 236 ~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~----~----~~~~~~i~i~S~SK~~g~~G~ 293 (456)
+|||||||.+++. +|++++++||+||+|.+..+. +. . ...+++|+++||||.|++||+
T Consensus 172 ~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~Gl 251 (393)
T TIGR03538 172 CSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGL 251 (393)
T ss_pred eCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCccc
Confidence 9999999999993 678899999999999853221 11 0 124689999999999999999
Q ss_pred eEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 294 RIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 294 RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
|+||++++ +++++++.+.......+++.+.|.++.+.+. + ++++++.++.++++++.+.+.|++.
T Consensus 252 RvG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~~~~~~~~L~~~-- 316 (393)
T TIGR03538 252 RSGFVAGD-AEILKAFLRYRTYHGCAMPIPTQLASIAAWN---D---------EQHVRENRALYREKFAAVLEILGQV-- 316 (393)
T ss_pred ceEEEecC-HHHHHHHHHHHHhhccCcCHHHHHHHHHHhc---C---------hHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 99999997 8999999888776677889999999888775 1 5688999999999999999999875
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCccHHHHH-HHHHhCCEEeecCCCCCC-------CCCeEEEEecCChhHHH
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCE-SFLKGNKILTRSGKHFGF-------SPKYVRISMLDRDENYN 445 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~l~~~gI~v~pg~~fg~-------~~~~iRis~~~~~e~i~ 445 (456)
+.+..|.|++ |+|++++.+...+. .+++++||.+.||+.|+. +.+++||+|+.++++++
T Consensus 317 ~~~~~p~gg~-------------f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~ 383 (393)
T TIGR03538 317 LDLELPDAGF-------------YLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECV 383 (393)
T ss_pred CcccCCCeeE-------------EEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHH
Confidence 4456677777 99999973334444 445679999999999852 25799999988999999
Q ss_pred HHHHHHHhhh
Q 012785 446 LFVQRLSKIL 455 (456)
Q Consensus 446 ~~l~~L~~~l 455 (456)
+++++|++++
T Consensus 384 ~~l~~l~~~~ 393 (393)
T TIGR03538 384 EAAERIRSFI 393 (393)
T ss_pred HHHHHHHHhC
Confidence 9999999864
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=368.22 Aligned_cols=326 Identities=17% Similarity=0.255 Sum_probs=263.8
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++++|+|+.|+|++++++....... ..+... ....|+++.| .++||+++|++++. +|....++++|++|+
T Consensus 28 ~~~~~i~l~~~~p~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~G-----~~~lr~aia~~~~~~~g~~~~~~~~I~it~ 99 (405)
T PRK09148 28 AGADIIDLGMGNPDLPTPQHIVDKLC-ETAQDP--RTHRYSASKG-----IPGLRRAQAAYYARRFGVKLNPDTQVVATL 99 (405)
T ss_pred cCCCeEEcCCCCCCCCCCHHHHHHHH-HHHcCc--ccCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCcEEEcC
Confidence 56688999999998876654443321 112111 1346999888 59999999999964 477665434899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc-----ccc------CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR-----FNK------DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~-----l~~------~~~~~i~v~~P~ 239 (456)
|++++|.+++.+++.+|| +|++++|+|+.+...++..|++++.++.+.++ ++. .+++++++++||
T Consensus 100 G~~~al~~~~~~l~~~gd----~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~ 175 (405)
T PRK09148 100 GSKEGFANMAQAITAPGD----VILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPS 175 (405)
T ss_pred ChHHHHHHHHHHhcCCCC----EEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCC
Confidence 999999999999999999 99999999999999999999999888765332 111 257899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||.+|+||+|+||++++ +
T Consensus 176 NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~-~ 254 (405)
T PRK09148 176 NPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGN-E 254 (405)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCC-H
Confidence 999999993 68899999999999985322 1222 12456889999999999999999999996 9
Q ss_pred HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcc
Q 012785 304 EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQF 383 (456)
Q Consensus 304 ~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~ 383 (456)
++++.+.+.+.....+++.+.|.++..+|+ +. ++++++.++.++++++.+.+.|++.+ +.+..|+|++
T Consensus 255 ~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~---~~--------~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~p~~g~ 322 (405)
T PRK09148 255 RLIAALTRVKSYLDYGAFTPIQVAATAALN---GP--------QDCIAEMRELYKKRRDVLVESFGRAG-WDIPPPAASM 322 (405)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCCeeE
Confidence 999999998877788899999999999987 32 57899999999999999999999875 5666677777
Q ss_pred cccccccCCCCCceEEeecCcc-----HHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 384 CTFLGRAFEPQPAFAWLKCEQE-----IEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 384 ~~~~~~~~~~~~~f~~~~~~~~-----~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++.. ..++. .+++++||.|+||..|+. +++++||+++.+.+++.+++++|++++
T Consensus 323 -------------f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l 388 (405)
T PRK09148 323 -------------FAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFL 388 (405)
T ss_pred -------------EEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999998641 23444 456689999999999974 468999999878899999999999876
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=366.51 Aligned_cols=317 Identities=17% Similarity=0.233 Sum_probs=255.3
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
+..+++|+.|+|++++++.+.+... ........|+++.| .++||+++|++++. +|..+. +++|++|+|
T Consensus 23 ~~~~i~l~~~~p~~~~~~~~~~a~~-----~~~~~~~~Y~~~~G-----~~~lr~aia~~l~~~~g~~~~-~~~I~it~G 91 (374)
T PRK05839 23 EYKGLDLTIGEPQFETPKFIQDALK-----NNAHLLNKYPKSAG-----EESLREAQRGFFKRRFKIELK-ENELIPTFG 91 (374)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHH-----HHhhccCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-cceEEEecC
Confidence 5589999999999887765554321 11122467999989 59999999999965 476665 589999999
Q ss_pred HHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-ccc-------cCCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-RFN-------KDGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~l~-------~~~~~~i~v~~P~NP 241 (456)
+++++..++.+++ ++|| .|++++|+|+.|...++..|++++.++.|.+ ++. ..++++++++|||||
T Consensus 92 ~~~al~~~~~~~~~~~~gd----~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i~nP~NP 167 (374)
T PRK05839 92 TREVLFNFPQFVLFDKQNP----TIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNP 167 (374)
T ss_pred cHHHHHHHHHHHhcCCCCC----EEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhhhccccEEEEeCCCCC
Confidence 9999999988774 4688 9999999999999999999999998887643 221 135789999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCC----CCCCC--------CCCCCcEEEecCccccCCCCceEEEEEEe
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQ----YTSIT--------YPADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~----~~~~~--------~~~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
||.+++. +|+++|++||+||+|.+.. ..++. ...+++|+++||||.|++||+|+||++++
T Consensus 168 TG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~ 247 (374)
T PRK05839 168 TGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGD 247 (374)
T ss_pred cCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecC
Confidence 9999993 6788999999999998632 11211 12368999999999999999999999996
Q ss_pred CHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 302 DMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
+++++++.+.......+++.+.|.++..++. + ++++++.++.++++++.+.+.|. .. .|+|
T Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~~~~~~~~l~----~~--~p~g 308 (374)
T PRK05839 248 -ASILKKYKAYRTYLGCASPLPLQKAAAVAWL---D---------DEHAEFFRNIYAKNLKLAREILG----IT--IPPA 308 (374)
T ss_pred -HHHHHHHHHHHhhcCCCCChHHHHHHHHHhc---c---------chHHHHHHHHHHHHHHHHHHhcC----CC--CCCe
Confidence 9999999888766677889999999988775 2 46888899999999998887662 22 5667
Q ss_pred cccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++ |+|++++.+.+.+.++++++||.|+||+.|+. .++++||+++.+++++++++++|+++++
T Consensus 309 g~-------------fi~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 309 TF-------------YVWLPVDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred eE-------------EEEEeCCChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 76 99999975555555555679999999998874 3689999998789999999999999874
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=367.13 Aligned_cols=328 Identities=15% Similarity=0.192 Sum_probs=257.0
Q ss_pred hcCCCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc
Q 012785 90 QDGGERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH 164 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~ 164 (456)
...++++|+|+.|+|+ +++|+.+.+... .++... ....|++..| .++||++||+|+.. +|..+. ++
T Consensus 28 ~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~-~~~~~~--~~~~Y~~~~G-----~~~lr~aia~~~~~~~g~~~~-~~ 98 (409)
T PLN00143 28 EDDHRLAISFGFGDPSCFECFRTTNIAEDAIV-EAVRSA--KFNSYAPTGG-----ILPARRAIADYLSNDLPYQLS-PD 98 (409)
T ss_pred cCCCCceeeCCCCCCCCCCCCCCCHHHHHHHH-HHHhCc--CCCCCCCCCC-----CHHHHHHHHHHHHhhcCCCCC-Hh
Confidence 3456789999999998 787776654322 122222 1346988888 59999999999964 465554 57
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc---CCCeEE
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK---DGPYIE 233 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~---~~~~~i 233 (456)
+|++|+|+++++.+++++++++|| +|++++|+|+.|...++..|.+++.+++ |.+.++. .+++++
T Consensus 99 ~I~it~G~~~al~~~~~~l~~~gd----~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 174 (409)
T PLN00143 99 DVYLTLGCKHAAEIIIKVLARPEA----NILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAM 174 (409)
T ss_pred hEEEecChHHHHHHHHHHHcCCCC----EEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEE
Confidence 999999999999999999999999 9999999999999999999999887765 3334432 356889
Q ss_pred EEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC--CCCCCcEEEecCccccCCCCceEEEE
Q 012785 234 LVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT--YPADHDLMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 234 ~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l 298 (456)
+++|||||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||.|++||+|+||+
T Consensus 175 ~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~ 254 (409)
T PLN00143 175 VIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWL 254 (409)
T ss_pred EEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEE
Confidence 999999999999983 68899999999999986322 2222 23458999999999999999999999
Q ss_pred EEeCH-HH------HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 012785 299 LVKDM-EV------AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS 371 (456)
Q Consensus 299 ~~~~~-~~------~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 371 (456)
+++++ .+ ++.+.+.... ....+.+.|.++.++|+ ++ .++++++.++.++++++.+.+.|+++
T Consensus 255 v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~---~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~ 323 (409)
T PLN00143 255 VTCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILE---KT-------TEDFFSKTINILRAALAFCYDKLKEI 323 (409)
T ss_pred EeeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHh---cC-------hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99433 33 3334433322 23358899999999987 32 25788999999999999999999887
Q ss_pred CCcc-ccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChh
Q 012785 372 GLFS-VPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDE 442 (456)
Q Consensus 372 ~~~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e 442 (456)
+... ...|+|++ |+|++++. +.+.+.++++++||.++||..|+. ++++||+|+.+++
T Consensus 324 ~~~~~~~~p~gg~-------------f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~~~iRi~~~~~~~ 389 (409)
T PLN00143 324 PCIMCPQKAEGAF-------------FALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGL-KNWLRITFAVEQS 389 (409)
T ss_pred CCCCCCCCCCeeE-------------EEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC-CCeEEEEEcCCHH
Confidence 5433 34677887 99999862 334556777899999999999975 7899999988899
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
++++++++|++++
T Consensus 390 ~l~~al~rl~~~l 402 (409)
T PLN00143 390 SLEDGLGRLKSFC 402 (409)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=362.93 Aligned_cols=326 Identities=20% Similarity=0.251 Sum_probs=263.6
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+++|+.|+|++..++.+.+... ..+... ....|+++.| .++||+++++|++. +|....++++|++|
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~G-----~~~lr~~ia~~~~~~~~~~~~~~~~vi~t 97 (383)
T TIGR03540 26 AEGVDVISLGIGDPDLPTPKHIVEALC-KAAENP--ENHRYPSYEG-----MLAYRQAVADWYKRRFGVELDPETEVLSL 97 (383)
T ss_pred hcCCCeEEeCCCCCCCCCCHHHHHHHH-HHHhCC--CCCCCCCCCC-----CHHHHHHHHHHHHHhhCCCCCCCCeEEEC
Confidence 456789999999999877665544322 111111 1346999888 59999999999964 56665544479999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-cc-------c---cCCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-RF-------N---KDGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~l-------~---~~~~~~i~v~~P 238 (456)
+|+++++.+++++++++|| +|++++|+|+.+...++..|++++.++.+.+ ++ + ..++++++++||
T Consensus 98 ~G~~~~l~~~~~~~~~~gd----~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P 173 (383)
T TIGR03540 98 IGSKEGIAHIPLAFVNPGD----IVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYP 173 (383)
T ss_pred CCcHHHHHHHHHHhCCCCC----EEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCC
Confidence 9999999999999999999 9999999999999999999999988877533 22 2 136789999999
Q ss_pred CCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCC---CCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 239 NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITY---PADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 239 ~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||||.+++. +|++++++||+||+|.+..+ .++.. ..+++|+++||||.||+||+|+||++++
T Consensus 174 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~- 252 (383)
T TIGR03540 174 NNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGN- 252 (383)
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCC-
Confidence 9999999993 68899999999999975322 22221 2367899999999999999999999996
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++++.........+++.+.|.++.++|. +. ++++++.++.++++++.+.+.|++.+ +.+..+.|+
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~ 320 (383)
T TIGR03540 253 ADLIAGLGKVKTNVDSGVFQAIQYAAIAALN---GP--------QDVVKEIRKIYQRRRDLLLEALKKIG-IDVEKPKAT 320 (383)
T ss_pred HHHHHHHHHHHHhcccCCChHHHHHHHHHHh---CC--------HHHHHHHHHHHHHHHHHHHHHHHhCC-CEecCCCcc
Confidence 9999999888776677889999999999887 33 67899999999999999999999874 667777777
Q ss_pred ccccccccCCCCCceEEeecCc--cHHHHHH-HHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ--EIEDCES-FLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~-~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
+ |+|+++++ +...+.+ +++++||.++||+.|+. +++++||+++.+++++++++++|+++
T Consensus 321 ~-------------~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~ 383 (383)
T TIGR03540 321 F-------------YVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKKL 383 (383)
T ss_pred e-------------EEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhhC
Confidence 7 89999974 3445554 45789999999999975 46899999988889999999998763
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=367.88 Aligned_cols=326 Identities=20% Similarity=0.217 Sum_probs=252.5
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccC--ccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEc
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPG--WQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVG 169 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t 169 (456)
++.+++|+.|+|++++++.+.+... ..+... ......|++..| .++||++||+|+. .+|..+. +++|++|
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Y~~~~G-----~~~LR~aia~~~~~~~g~~~~-~~~I~it 105 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMH-KAVDEMGTAETFRGYGPEQG-----YDFLREKIAENDYQARGCDIS-ADEIFIS 105 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHH-HHHhcccccCCccCCCCCCC-----CHHHHHHHHHHHHHhcCCcCC-hhhEEEC
Confidence 5679999999999887765443322 111111 012346888888 5999999999974 5666665 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCe-----------EeeeccCcc-ccc----cCCCeEE
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSR-----------LYKWAGDAK-RFN----KDGPYIE 233 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~-----------~~~~~~d~~-~l~----~~~~~~i 233 (456)
+|+++++.+++ .++.+|| +|++++|+|+.|...++..|.+ ++.+++|.+ ++. ..+++++
T Consensus 106 ~Ga~~al~~l~-~~~~~gd----~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i 180 (409)
T PRK07590 106 DGAKCDTGNIL-DIFGPDN----TIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDII 180 (409)
T ss_pred CCHHHHHHHHH-HhcCCCC----EEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcccCceEE
Confidence 99999999875 4568999 9999999999999999999987 888887643 332 2467999
Q ss_pred EEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCC---CCCCcEEEecCccccCCCCceEEE
Q 012785 234 LVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITY---PADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 234 ~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~---~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
+++|||||||.+++. +|++++++||+||+|.+..+ .++.. ..+++|+++||||+||+||+|+||
T Consensus 181 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~ 260 (409)
T PRK07590 181 YLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAY 260 (409)
T ss_pred EEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEE
Confidence 999999999999993 68899999999999985322 12221 235799999999999999999999
Q ss_pred EEEeCHHHHHHH-----------HHHHhhcc-CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 298 ALVKDMEVAKKM-----------TKYIELNT-IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 298 l~~~~~~~~~~l-----------~~~~~~~~-~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
++++ +++++.+ ........ .++|.+.|.++..++. ++ .+++++++++.++++++.+.
T Consensus 261 ~i~~-~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~---~~-------~~~~~~~~~~~~~~~r~~l~ 329 (409)
T PRK07590 261 TVVP-KELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYS---PE-------GKAQIKELIDYYMENAKIIR 329 (409)
T ss_pred EEcC-HHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhc---CC-------cHHHHHHHHHHHHHHHHHHH
Confidence 9997 8887632 11122223 4689999999988886 22 25789999999999999999
Q ss_pred HHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCCh
Q 012785 366 MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRD 441 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~ 441 (456)
+.|++.+ +.+..+.|++ |+|++++. +...+. .+++++||.+.||+.|+. +.+++||++..++
T Consensus 330 ~~L~~~~-~~~~~~~g~~-------------f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~ 395 (409)
T PRK07590 330 EGLESAG-FEVYGGVNAP-------------YIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSR 395 (409)
T ss_pred HHHHhcC-CceecCCcce-------------EEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCH
Confidence 9999874 5666666776 99999974 334444 455678999999999975 4679999986789
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
+++++++++|++++
T Consensus 396 ~~l~~~l~rl~~~~ 409 (409)
T PRK07590 396 ENVLEAMERIKKAL 409 (409)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999864
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=366.90 Aligned_cols=325 Identities=15% Similarity=0.230 Sum_probs=256.8
Q ss_pred CCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEE
Q 012785 93 GERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIV 167 (456)
Q Consensus 93 ~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~ 167 (456)
+.++|+|++|+|+ +++++.+.+... .++..+. .+.|++..| .++||++++++++. +|.... +++|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~-~al~~~~--~~~Y~~~~G-----~~~lr~aia~~~~~~~~~~~~-~~~v~ 121 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVA-AALRSGK--YNSYSTCVG-----LLPARRAIAEYLSRDLPYELS-TDDIY 121 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHH-HHHHcCc--CCCCCCCcc-----CHHHHHHHHHHHhhccCCCCC-hhhEE
Confidence 6689999999996 555554443322 2222221 346898889 59999999999954 455554 57999
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc---CCCeEEEEc
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK---DGPYIELVT 236 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~---~~~~~i~v~ 236 (456)
+|+|++++|++++.++.++|| +|++++|+|+.|...+...|++++.+++ |.+.++. .++++++++
T Consensus 122 it~G~~~al~l~~~~l~~~Gd----~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 197 (430)
T PLN00145 122 LTAGCAQAIEIIMSVLAQPGA----NILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVII 197 (430)
T ss_pred EeCCHHHHHHHHHHHhcCCCC----EEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEe
Confidence 999999999999999999999 9999999999999999999998876543 4444432 367899999
Q ss_pred CCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC--CCCCCcEEEecCccccCCCCceEEEEEEe
Q 012785 237 SPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT--YPADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 237 ~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
|||||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||.|++||+|+||++++
T Consensus 198 ~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~ 277 (430)
T PLN00145 198 NPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATC 277 (430)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEe
Confidence 999999999982 68889999999999986322 2221 23468999999999999999999999984
Q ss_pred C-HHHH------HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 302 D-MEVA------KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 302 ~-~~~~------~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
+ +.++ +.+..... ...+++.+.|.++..+|+ +. .++++++.++.++++++.+.+.|++++++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~---~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~~g~ 346 (430)
T PLN00145 278 DPNGILKETKVVDSIRNYLN-ISTDPATFVQGAIPQIIA---NT-------KEEFFTKTLGLLKETADICYEKIKEIKCI 346 (430)
T ss_pred cchhhhhhhHHHHHHHHHhc-ccCCCCHHHHHHHHHHHh---cC-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 3333 23333332 344678899999999997 32 26789999999999999999999988666
Q ss_pred cc-cCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHH
Q 012785 375 SV-PELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYN 445 (456)
Q Consensus 375 ~~-~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~ 445 (456)
.+ ..|+|++ |+|++++. +.+.+.++++++||.+.||..||. ++|+||+|+.+.+.++
T Consensus 347 ~~~~~P~ga~-------------y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~-~~~lRis~~~~~~~l~ 412 (430)
T PLN00145 347 TCPHKPEGSM-------------FVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGM-KNWLRITFAIDPPSLE 412 (430)
T ss_pred CCCcCCCeee-------------EEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC-CCeEEEEeCCCHHHHH
Confidence 65 4688888 99998852 234566788899999999999985 7999999988889999
Q ss_pred HHHHHHHhhh
Q 012785 446 LFVQRLSKIL 455 (456)
Q Consensus 446 ~~l~~L~~~l 455 (456)
+++++|++++
T Consensus 413 ~al~rl~~~~ 422 (430)
T PLN00145 413 DGLERLKSFC 422 (430)
T ss_pred HHHHHHHHHH
Confidence 9999999876
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=362.65 Aligned_cols=325 Identities=20% Similarity=0.272 Sum_probs=262.0
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++|+|+.|+|+++.++.+.+... ..+... ....|++..| .++||+++|+|++. +|..+.++++|++|+
T Consensus 30 ~~~~~i~l~~~~p~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~g-----~~~lr~aia~~~~~~~g~~~~~~~~i~it~ 101 (389)
T PRK08068 30 EGHDVINLGQGNPDQPTPEHIVEALQ-EAAENP--ANHKYSPFRG-----YPFLKEAAADFYKREYGVTLDPETEVAILF 101 (389)
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHH-HHHhCC--CCCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCccEEEcC
Confidence 45678999999999876655543221 112221 1346988888 59999999999964 566665433899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-cc-------cc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-RF-------NK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~l-------~~---~~~~~i~v~~P~ 239 (456)
|+++++..++.+++.+|| +|++++|+|+.|...++..|++++.++.|.+ ++ +. .++++++++|||
T Consensus 102 G~~~~l~~~~~~~~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~ 177 (389)
T PRK08068 102 GGKAGLVELPQCLMNPGD----TILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPN 177 (389)
T ss_pred CcHHHHHHHHHHhCCCCC----EEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCC
Confidence 999999999999999999 9999999999999999999999988877542 22 21 367899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC---CCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
||||.+++. +|++++++||+||+|.+..+. +.. ...+++|+++||||.||+||+|+||++++ +
T Consensus 178 NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~ 256 (389)
T PRK08068 178 NPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGN-E 256 (389)
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecC-H
Confidence 999999993 788999999999999753221 211 23457899999999999999999999996 9
Q ss_pred HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcc
Q 012785 304 EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQF 383 (456)
Q Consensus 304 ~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~ 383 (456)
++++.+.+.......+.+++.|.++..+|. ++ .+++++.++.++++++.+.+.|++++ +.+.+|.|++
T Consensus 257 ~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~r~~~~~~L~~~g-~~~~~~~g~~ 324 (389)
T PRK08068 257 SVIEAINLLQDHLFVSLFGAIQDAAIEALL---SD--------QSCVAELVARYESRRNAFISACREIG-WEVDAPKGSF 324 (389)
T ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeeE
Confidence 999999988776667777788998888886 33 57899999999999999999999875 6677778887
Q ss_pred cccccccCCCCCceEEeecCc--cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 384 CTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 384 ~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|+++++ +.+.+.+.+. ++||.|+||..|+. +++++||+++.+++.+.+++++|+++
T Consensus 325 -------------~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 325 -------------FAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred -------------EEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 89999964 4566666665 57999999999974 46899999987888999999999875
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=368.72 Aligned_cols=328 Identities=17% Similarity=0.192 Sum_probs=254.6
Q ss_pred cCCCCeEEecCCCC---CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceE
Q 012785 91 DGGERIINVDHGDP---TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHI 166 (456)
Q Consensus 91 ~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I 166 (456)
..+.++++|+.|+| ++.+|+++.+.... .+... ....|++..| .++||+++++|++. +|..+. +++|
T Consensus 29 ~~g~~~~~~~~G~p~~~~~~~p~~~~~a~~~-~~~~~--~~~~Y~~~~G-----~~~LReaia~~~~~~~g~~~~-~~~I 99 (433)
T PRK06855 29 KLGVKITWENIGDPIAKGEKIPDWMKEIVAE-LVMDD--KSYGYCPTKG-----VLETREFLAELNNKRGGAQIT-PDDI 99 (433)
T ss_pred hccccccccccCCCcccCCCCCHHHHHHHHH-HhhcC--CCCCCCCCCC-----CHHHHHHHHHHHHhccCCCCC-HhHE
Confidence 34567899999999 57878777654221 12221 2346888899 59999999999965 466665 5799
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh-hhcCCeEeeeccC--------cccccc-----CCCeE
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-DCVKSRLYKWAGD--------AKRFNK-----DGPYI 232 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~-~~~g~~~~~~~~d--------~~~l~~-----~~~~~ 232 (456)
++|+|++++|.+++. ++.+|| .|++++|+|+.|.... ...|.+++.+++| .+.++. .++++
T Consensus 100 ~it~G~~~al~~~~~-l~~~Gd----~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 174 (433)
T PRK06855 100 IFFNGLGDAIAKIYG-LLRREA----RVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAG 174 (433)
T ss_pred EEcCcHHHHHHHHHH-hcCCCC----eEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceE
Confidence 999999999999985 788999 9999999999987543 3458877766544 333432 24688
Q ss_pred EEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCC-CC-CCcEEEecCccccCCCCceEEE
Q 012785 233 ELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITY-PA-DHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~-~~-~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
++++|||||||.+++. +|++++++||+||+|.+..+ .++.. .. +++|+++||||.+++||+|+||
T Consensus 175 i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ 254 (433)
T PRK06855 175 ILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGW 254 (433)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEE
Confidence 9999999999999993 68899999999999986433 22211 12 3689999999999999999999
Q ss_pred EEEeC----H---HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 012785 298 ALVKD----M---EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK 370 (456)
Q Consensus 298 l~~~~----~---~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 370 (456)
+++++ + ++.+.+..... ...+++.+.|.++..+|+ ++ ..+++++++++.+++|++.+.+.|++
T Consensus 255 ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~---~~------~~~~~~~~~~~~~~~r~~~~~~~L~~ 324 (433)
T PRK06855 255 IEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMS---HP------EYKNYLKERNKRYEKRSNIAYEKLKD 324 (433)
T ss_pred EEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhc---CC------cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99842 2 23333333332 345788999999999997 33 23789999999999999999999988
Q ss_pred cCCccccCCCCcccccccccCCCCCceEEeecCc------------------------------cHHHHHHHHHhCCEEe
Q 012785 371 SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ------------------------------EIEDCESFLKGNKILT 420 (456)
Q Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~------------------------------~~~~~~~~l~~~gI~v 420 (456)
.+++.+..|+|+| |+|+++++ +.+.+..+++++||.+
T Consensus 325 ~~~~~~~~p~gg~-------------~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 391 (433)
T PRK06855 325 VPGLKVNRTNGAF-------------YMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICV 391 (433)
T ss_pred CCCeeccCCCeeE-------------EEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEE
Confidence 7557788899998 99999963 2244556788999999
Q ss_pred ecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 421 RSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 421 ~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
.||+.|+...+++||+|+. +++++++++++|++++
T Consensus 392 ~PG~~F~~~~~~~Rls~~~~~~~~i~~~~~~l~~~~ 427 (433)
T PRK06855 392 VPLSSFCTELNGFRVTLLERDEEKFEWIYQTLAEKI 427 (433)
T ss_pred ecCCcCCCCCCceEEEECCCcHHHHHHHHHHHHHHH
Confidence 9999998655679999996 8999999999999876
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=361.79 Aligned_cols=325 Identities=21% Similarity=0.257 Sum_probs=261.0
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++++|+.|+|++++++.+.+... ..+... ....|++..| .++||+++++|++. +|....++++|++|+
T Consensus 29 ~~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~G-----~~~lr~aia~~~~~~~g~~~~~~~~ii~t~ 100 (385)
T PRK09276 29 RGVDVISLGIGDPDLPTPDHIIEAMC-KAVEDP--ENHQYPSYEG-----MLEFRKAVADWYKRRFGVELDPETEVISLI 100 (385)
T ss_pred cCCCEEEecCCCCCCCCCHHHHHHHH-HHHhCC--CCCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCCCCCcEEEcc
Confidence 45678999999999877665544322 111111 1346999888 59999999999965 466565444699999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-c-------ccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-R-------FNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~-------l~~---~~~~~i~v~~P~ 239 (456)
|+++++..++.+++++|| +|++++|+|+.|...++..|.+++.++.+.+ + ++. .++++++++|||
T Consensus 101 G~~~~i~~~~~~~~~~gd----~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~ 176 (385)
T PRK09276 101 GSKEGIAHIPLAFVNPGD----VVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPN 176 (385)
T ss_pred CcHHHHHHHHHHhCCCCC----EEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCC
Confidence 999999999999999999 9999999999999999999999987776432 2 221 267899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||.||+||+|+||++++ +
T Consensus 177 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~-~ 255 (385)
T PRK09276 177 NPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGN-A 255 (385)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCC-H
Confidence 999999983 67889999999999985322 2222 12457899999999999999999999996 9
Q ss_pred HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcc
Q 012785 304 EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQF 383 (456)
Q Consensus 304 ~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~ 383 (456)
++++.+.+.+.....+++.+.|.++..+|. +. ++++++.++.++++++.+.+.|++.+ +.+..|.|++
T Consensus 256 ~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~ 323 (385)
T PRK09276 256 DLIAGLGKVKSNVDSGVFQAIQEAGIAALN---GP--------QEVVEELRKIYQERRDILVEGLRKLG-LEVEPPKATF 323 (385)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHc---Cc--------HHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcce
Confidence 999999988776677788899999999886 22 67899999999999999999999874 6666777777
Q ss_pred cccccccCCCCCceEEeecCc--cHHHHHH-HHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 384 CTFLGRAFEPQPAFAWLKCEQ--EIEDCES-FLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 384 ~~~~~~~~~~~~~f~~~~~~~--~~~~~~~-~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|+++++ +...+.+ +++++||.++||..|+. +++++||+++.+++++.+++++|+++
T Consensus 324 -------------~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~ 385 (385)
T PRK09276 324 -------------YVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKKL 385 (385)
T ss_pred -------------EEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhhC
Confidence 89999974 3445544 45678999999999975 46799999988889999999998763
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=364.01 Aligned_cols=328 Identities=16% Similarity=0.238 Sum_probs=263.3
Q ss_pred hcCCCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc
Q 012785 90 QDGGERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH 164 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~ 164 (456)
...++++|+|+.|+|+ +++++.+.+... .++.... ...|++..| .++||++++++++. +|..+. ++
T Consensus 27 ~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~-~~~~~~~--~~~Y~~~~G-----~~~lr~~ia~~~~~~~g~~~~-~~ 97 (409)
T PLN02656 27 EENGKRVISLGMGDPTAYSCFHTTHVAQEAVV-DALQSNK--FNGYAPTVG-----LPQARRAIAEYLSRDLPYKLS-LD 97 (409)
T ss_pred cccCCeeeecCCCCCCcCCCCCCCHHHHHHHH-HHHhcCC--CCCCCCCCC-----CHHHHHHHHHHHHHhcCCCCC-cc
Confidence 3467899999999998 676665554322 2222221 346988888 59999999999965 465554 57
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEE
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIE 233 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i 233 (456)
+|++|+|+++++.+++.+++++|| +|++++|+|+.+...++..|++++.++++ .+.++. .+++++
T Consensus 98 ~i~~t~G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v 173 (409)
T PLN02656 98 DVFITSGCTQAIDVALSMLARPGA----NILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVAL 173 (409)
T ss_pred cEEEeCChHHHHHHHHHHHhCCCC----eEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEE
Confidence 999999999999999999999999 99999999999999999999998877653 223322 357889
Q ss_pred EEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC--CCCCCcEEEecCccccCCCCceEEEE
Q 012785 234 LVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT--YPADHDLMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 234 ~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l 298 (456)
++++||||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||+|++||+|+||+
T Consensus 174 ~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~ 253 (409)
T PLN02656 174 VIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF 253 (409)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEE
Confidence 999999999999872 68889999999999986432 2221 23468999999999999999999999
Q ss_pred EEeC-------HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 012785 299 LVKD-------MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS 371 (456)
Q Consensus 299 ~~~~-------~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 371 (456)
++++ +++++++.+.... ..+++.+.|.++..+|+ ++ .++++++.++.++++++.+.+.|+.+
T Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~---~~-------~~~~~~~~~~~~~~~r~~~~~~L~~~ 322 (409)
T PLN02656 254 VTTDPSGSFRDPKIVERIKKYFDI-LGGPATFIQAAVPTILE---QT-------DESFFKKTINILKQSSDICCDRIKEI 322 (409)
T ss_pred EEeCcccccccHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHh---cC-------cHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9952 5788888877553 35789999999999997 32 25789999999999999999999987
Q ss_pred CCcc-ccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChh
Q 012785 372 GLFS-VPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDE 442 (456)
Q Consensus 372 ~~~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e 442 (456)
+.+. +.+|.|++ |+|++++. +.+.+.++++++||.+.||+.|+. ++++||+|+.+++
T Consensus 323 ~~~~~~~~p~gg~-------------~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~-~~~iRi~~~~~~e 388 (409)
T PLN02656 323 PCITCPHKPEGSM-------------AVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL-KNWLRITFAADPS 388 (409)
T ss_pred CCCcCCcCCCeEE-------------EEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCC-CCeEEEEeCCCHH
Confidence 5443 35678888 99999851 224567888999999999999975 7899999988999
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
++++++++|++++
T Consensus 389 ~l~eal~rl~~~~ 401 (409)
T PLN02656 389 SLEEALGRIKSFY 401 (409)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=338.00 Aligned_cols=359 Identities=16% Similarity=0.244 Sum_probs=288.3
Q ss_pred CCchhhHHHHhhhhhccccCCCceeecccccccccCCCCCCccccccccchhhhcCCCCeEEecCCCCCCCchh---Hhh
Q 012785 37 FDSSFSLQQQRRSVMAGCVLKEKEHVSERTHLSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKY---WQK 113 (456)
Q Consensus 37 ~w~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~---~~~ 113 (456)
.|+......|+++++++- |.|++ .+...|....++.+|.|++|||...+.. ...
T Consensus 27 ~W~f~gs~~a~ka~~~ti----r~i~~-------------------~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a 83 (447)
T KOG0259|consen 27 VWRFKGSDAAKKAASVTI----RGILS-------------------ALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEA 83 (447)
T ss_pred ceeeccchhhhhhccccH----HHHHH-------------------HHhhcCCcccCceeccCCCCCCCccccccCCHHH
Confidence 399988887777766655 33666 1222223445568999999999854321 112
Q ss_pred hcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCc
Q 012785 114 VGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPI 192 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~ 192 (456)
+++...++.++- .+.|.+..|+ +..|+++|+|+.+ ..+..+ +++|++|+|-.|||++++.+|.+||.
T Consensus 84 ~~Av~~al~Sgk--~N~Yaps~G~-----~~AR~AVAeYl~~~l~~kl~-a~DV~ltsGC~qAIe~~i~~LA~p~a---- 151 (447)
T KOG0259|consen 84 EQAVVDALRSGK--GNGYAPSVGI-----LPARRAVAEYLNRDLPNKLT-ADDVVLTSGCSQAIELAISSLANPGA---- 151 (447)
T ss_pred HHHHHHHHhcCC--CCCcCCcccc-----HHHHHHHHHHhhcCCCCccC-cCceEEeccchHHHHHHHHHhcCCCC----
Confidence 222223344443 4579999995 9999999999743 455555 57999999999999999999999999
Q ss_pred EEEEeCCCCCChhhhhhhcCCeEee--------eccCcccccc---CCCeEEEEcCCCCCCcccchH--------Hhhhc
Q 012785 193 SVVSAAPYYSSYPSITDCVKSRLYK--------WAGDAKRFNK---DGPYIELVTSPNNPDGSVRQS--------VVNRS 253 (456)
Q Consensus 193 ~Vlv~~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~~--------l~~~~ 253 (456)
+|++|.|+|+.|...+...|+++.. |++|+++++. +++.++++.||+||+|.++++ +|+++
T Consensus 152 NILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~kl 231 (447)
T KOG0259|consen 152 NILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKL 231 (447)
T ss_pred ceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHh
Confidence 9999999999999999999998874 5567766653 588999999999999999994 78999
Q ss_pred CcEEEeeecCCCC-----CCCCCCCC--CCCcEEEecCccccCCCCceEEEEEEeCH-------HHHHHHHHHHhhccCc
Q 012785 254 GGILVHDLAYYWP-----QYTSITYP--ADHDLMLFTVSKSTGHAGTRIGWALVKDM-------EVAKKMTKYIELNTIG 319 (456)
Q Consensus 254 ~~~iI~De~y~~~-----~~~~~~~~--~~~~i~i~S~SK~~g~~G~RiG~l~~~~~-------~~~~~l~~~~~~~~~~ 319 (456)
+++||.||+|.+. .|.|+... .-.+|.++|+||.|-.||||+||++..|+ .+.+.+.+... .+.+
T Consensus 232 gi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~-~~~~ 310 (447)
T KOG0259|consen 232 GIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLD-IIPG 310 (447)
T ss_pred CCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHHHh-ccCC
Confidence 9999999999863 34444322 23589999999999999999999999863 44566666644 5789
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCCCcccccccccCCCCCceE
Q 012785 320 VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS-VPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 320 ~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
++.+.|.|...+|+. . .+++++.....++.+.++.++.|++++.+. ..+|+|.+ |+
T Consensus 311 p~TiiQ~AlP~IL~k---T-------p~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~m-------------yl 367 (447)
T KOG0259|consen 311 PATIIQGALPDILEK---T-------PEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCM-------------YL 367 (447)
T ss_pred ccHhHHHHhHHHHHh---C-------hHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcce-------------EE
Confidence 999999999999983 3 489999999999999999999999999887 56788877 89
Q ss_pred EeecC--------ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 399 WLKCE--------QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 399 ~~~~~--------~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++++ ++.++|.++.+|+.+.+.||..||. ++|+|++++.+.+.++++++||+++.
T Consensus 368 mv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~-~nw~Ri~i~~~~~~leea~~Rik~Fc 431 (447)
T KOG0259|consen 368 MVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGL-KNWLRIVITVEEEMLEEAFSRIKEFC 431 (447)
T ss_pred EeccchhhhccccccHHHHHHHhhhcceEEeccccccC-CCeEEEEEccChHHHHHHHHHHHHHH
Confidence 99875 3578899999999999999999997 99999999889999999999999875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=360.19 Aligned_cols=323 Identities=15% Similarity=0.200 Sum_probs=261.6
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
...++|+|+.|+|++++++.+.+... ..+... ...|++..| .++||+++++++.. +|...+++++|++|+
T Consensus 27 ~~~~~i~l~~g~p~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~G-----~~~lr~~ia~~l~~~~g~~~~~~~~i~it~ 97 (384)
T PRK12414 27 AQHDALNLSQGAPNFAPDPALVEGVA-RAMRDG---HNQYAPMAG-----IAALREALAEKTERLYGARYDPASEVTVIA 97 (384)
T ss_pred HhCCeEEcCCCCCCCCCCHHHHHHHH-HHHHhC---CCCcCCCCC-----cHHHHHHHHHHHHHHhCCCCCCCCcEEEEC
Confidence 34578999999999876655554322 112222 246988889 59999999999965 576655446899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-------cccc---CCCeEEEEcCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-------RFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-------~l~~---~~~~~i~v~~P~N 240 (456)
|+++++.+++++++.+|| +|++++|+|..+...++..|.+++.+++|.+ .++. .++++++++||||
T Consensus 98 g~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~N 173 (384)
T PRK12414 98 SASEGLYAAISALVHPGD----EVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHN 173 (384)
T ss_pred ChHHHHHHHHHHhcCCCC----EEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCC
Confidence 999999999999999999 9999999999999999999999988776532 2322 3678999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|||.++++ +|+++++++|+||+|.+..+ .++. ...+++|+++||||.||+||+|+||++++ ++
T Consensus 174 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~-~~ 252 (384)
T PRK12414 174 PSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAP-AE 252 (384)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecC-HH
Confidence 99999872 67889999999999985322 1222 22468999999999999999999999997 89
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+++.+.+......++++.+.|.++..+|+ ++ .+..+.++.++++++.+.+.|++.+ +.+.++.|+|
T Consensus 253 l~~~l~~~~~~~~~~~s~~~q~a~~~~l~---~~---------~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~gg~- 318 (384)
T PRK12414 253 LMDEIRKVHQFMVFSADTPMQHAFAEALA---EP---------ASYLGLGAFYQRKRDLLARELAGSR-FELLPSEGSF- 318 (384)
T ss_pred HHHHHHHHHhheecCCCcHHHHHHHHHhc---CC---------hHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCcce-
Confidence 99999998877788999999999999887 33 2344678899999999999999875 6777788888
Q ss_pred ccccccCCCCCceEEeecCc-----cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQ-----EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++. +.+.+.++++++||.+.||+.|+. ..+++||+++.+++++++++++|.++
T Consensus 319 ------------~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~~ 384 (384)
T PRK12414 319 ------------FMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCSL 384 (384)
T ss_pred ------------EEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhhC
Confidence 89988752 345566788899999999999963 26799999988899999999999863
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=359.43 Aligned_cols=328 Identities=19% Similarity=0.254 Sum_probs=263.4
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++++++|+.|+|++++++.+.+... ..+..+ ...|++..| .++||+++|++++. +|.... +++|++|
T Consensus 29 ~~~~~~i~l~~g~~~~~~~~~v~~a~~-~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~i~it 98 (387)
T PRK08960 29 AAGHDVIHLEIGEPDFTTAEPIVAAGQ-AALAAG---HTRYTAARG-----LPALREAIAGFYAQRYGVDVD-PERILVT 98 (387)
T ss_pred hcCCCeEEeCCCCCCCCCCHHHHHHHH-HHHhcC---CCccCCCCC-----CHHHHHHHHHHHHHHhCCCCC-hhhEEEc
Confidence 345678999999999876655554322 112222 235777788 59999999999964 566665 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v~~P 238 (456)
+|++++|++++.+++.+|| +|++++|+|+.+...++..|.+++.+++|.+ .++. .+++++++++|
T Consensus 99 ~G~~~al~~~~~~~~~~gd----~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p 174 (387)
T PRK08960 99 PGGSGALLLASSLLVDPGK----HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASP 174 (387)
T ss_pred cCcHHHHHHHHHHhcCCCC----EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECC
Confidence 9999999999999999999 9999999999999999999999887765543 2322 25678899999
Q ss_pred CCCCcccchH--------HhhhcCcEEEeeecCCCCCC----CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 239 NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 239 ~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
|||||.+++. +|+++++++|+||+|.+..+ .++....+++|+++||||.||++|+|+||++++ ++++
T Consensus 175 ~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~-~~~~ 253 (387)
T PRK08960 175 ANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAP-PAAV 253 (387)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcC-HHHH
Confidence 9999999982 67889999999999986322 233344578999999999999999999999997 8999
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+++.+.......++|.+.|.++..+|. +. .++++++.++.++++++.+.+.|++++...+..|.|++
T Consensus 254 ~~~~~~~~~~~~~~s~~~q~a~~~~l~---~~-------~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~--- 320 (387)
T PRK08960 254 PELEKLAQNLYISASTPAQHAALACFE---PE-------TLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAF--- 320 (387)
T ss_pred HHHHHHHhhhccCCCHHHHHHHHHHhh---cC-------cHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeE---
Confidence 999988877788899999999999886 22 26789999999999999999999987532234567777
Q ss_pred ccccCCCCCceEEeecCc---cHHHHH-HHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 387 LGRAFEPQPAFAWLKCEQ---EIEDCE-SFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~---~~~~~~-~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+. ++++++||.+.||+.|+. .++++||+++.+.+++.+++++|++++.
T Consensus 321 ----------f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 321 ----------YLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred ----------EEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 99999863 344455 456689999999999974 3579999998888999999999998763
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=360.51 Aligned_cols=326 Identities=17% Similarity=0.244 Sum_probs=261.3
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++++|+|+.|+|+.++|........ ..+... ....|+++.| .++||+++|+|++. +|....++++|++|
T Consensus 32 ~~g~~~i~l~~g~p~~~~p~~~~~~~~-~~~~~~--~~~~Y~~~~G-----~~~lr~aia~~~~~~~~~~~~~~~~i~vt 103 (394)
T PRK05942 32 EQGLDLIDLGMGNPDGAAPQPVIEAAI-AALADP--QNHGYPPFEG-----TASFRQAITDWYHRRYGVELDPDSEALPL 103 (394)
T ss_pred hcCCCeEEcCCCCCCCCCCHHHHHHHH-HHHhCC--CCccCCCCCC-----CHHHHHHHHHHHHHHHCCCcCCCCeEEEc
Confidence 356678999999998875543333211 112221 1346999999 59999999999965 46666543369999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P 238 (456)
+|+++++..++.+++++|| +|++++|+|+.+...+...|++++.+++|. +.++. .++++++++||
T Consensus 104 ~G~~~al~~~~~~~~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P 179 (394)
T PRK05942 104 LGSKEGLTHLALAYVNPGD----VVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYP 179 (394)
T ss_pred cChHHHHHHHHHHhCCCCC----EEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCC
Confidence 9999999999999999999 999999999999999999999998877653 22322 36799999999
Q ss_pred CCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 239 NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 239 ~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||.||+||+|+||++++
T Consensus 180 ~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~- 258 (394)
T PRK05942 180 SNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN- 258 (394)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecC-
Confidence 9999999982 68899999999999985322 2222 12456899999999999999999999996
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++.++........+++.++|.++..+|+ . .++++++.++.++++++.+.+.|++.+ +.+..|+|+
T Consensus 259 ~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~---~--------~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~ 326 (394)
T PRK05942 259 RHIIQGLRTLKTNLDYGIFSALQKAAETALQ---L--------PDSYLQQVQERYRTRRDFLIQGLGELG-WNIPPTKAT 326 (394)
T ss_pred HHHHHHHHHHHhhcccCCCHHHHHHHHHHHh---C--------cHHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCee
Confidence 9999999988776678899999999999987 2 267899999999999999999998875 567777787
Q ss_pred ccccccccCCCCCceEEeecCc--c-HHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ--E-IEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~--~-~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
+ |+|++++. + .+.+.++++++||.+.||+.|+. ..+++||+++.+.+.+.+++++|+++
T Consensus 327 ~-------------f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 327 M-------------YLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred e-------------EEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 7 89999864 2 34455677899999999999974 46899999987788899999988764
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=371.70 Aligned_cols=301 Identities=18% Similarity=0.224 Sum_probs=239.3
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhc-CCCCCCCcEEEEeCCCCCChhh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALS-SQDASEPISVVSAAPYYSSYPS 206 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~P~y~~~~~ 206 (456)
..|++..| .++||++||+|++. .|..+. +++|++|+|+++++.+++++++ ++|| .|++++|+|+.|..
T Consensus 109 ~~Y~~~~G-----~~~LR~aia~~~~~~~g~~~~-~~~I~it~Ga~~al~~~~~~l~~~~gD----~Vlv~~P~y~~y~~ 178 (481)
T PTZ00377 109 GAYTDSAG-----YPFVRKAVAAFIERRDGVPKD-PSDIFLTDGASSGIKLLLQLLIGDPSD----GVMIPIPQYPLYSA 178 (481)
T ss_pred cCcCcccC-----CHHHHHHHHHHHHHhcCCCCC-hhhEEEcCCHHHHHHHHHHHhccCCCC----EEEECCCCchhHHH
Confidence 56999999 59999999999965 566664 6799999999999999999998 7999 99999999999999
Q ss_pred hhhhcCCeEeeeccCc--------cccccC---------CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeee
Q 012785 207 ITDCVKSRLYKWAGDA--------KRFNKD---------GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDL 261 (456)
Q Consensus 207 ~~~~~g~~~~~~~~d~--------~~l~~~---------~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De 261 (456)
.++..|.+++.+++|. +.++.. ++++++++|||||||.++++ +|++++++||+||
T Consensus 179 ~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De 258 (481)
T PTZ00377 179 AITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADE 258 (481)
T ss_pred HHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeh
Confidence 9999999998877653 223221 57888899999999999983 7889999999999
Q ss_pred cCCCCCC------CCCC----CC------CCCcEEEecCccc-cCCCCceEEEEEE---eCHHHHHHHHHHHhhccCcCC
Q 012785 262 AYYWPQY------TSIT----YP------ADHDLMLFTVSKS-TGHAGTRIGWALV---KDMEVAKKMTKYIELNTIGVS 321 (456)
Q Consensus 262 ~y~~~~~------~~~~----~~------~~~~i~i~S~SK~-~g~~G~RiG~l~~---~~~~~~~~l~~~~~~~~~~~s 321 (456)
+|.+..| .++. .. ..++|+++||||. +++||+|+||+++ + +++++++.+.+. ...+++
T Consensus 259 ~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p-~~li~~l~~~~~-~~~~~~ 336 (481)
T PTZ00377 259 VYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIP-PEVREQIYKLAS-INLCSN 336 (481)
T ss_pred hhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCC-HHHHHHHHHHhh-eecCCC
Confidence 9985322 1211 11 1268999999997 5999999999987 5 899999988764 456799
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEee
Q 012785 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLK 401 (456)
Q Consensus 322 ~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~ 401 (456)
.++|.++..+|+....+... ...+.+++++.++.+++|++.+.+.|++++++.+..|+|++ |+|++
T Consensus 337 ~~~Q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~-------------fl~~~ 402 (481)
T PTZ00377 337 VVGQLMTGLMCNPPREGDAS-YPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAM-------------YAFPR 402 (481)
T ss_pred hHHHHHHHHHhCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeE-------------EEEee
Confidence 99999999999631111000 00123344555567899999999999988778888899998 89976
Q ss_pred cC--c-------------cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 402 CE--Q-------------EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 402 ~~--~-------------~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++ . +...+..+++++||.+.||+.|+. +.+++||||+.+++++++++++|++++
T Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~ 473 (481)
T PTZ00377 403 IELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFH 473 (481)
T ss_pred ccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 53 1 123456788899999999999984 457999999877789999999999876
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=362.10 Aligned_cols=320 Identities=19% Similarity=0.222 Sum_probs=263.0
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
..+.++++|+.|+|++++|+.+ +. ...++.+. ...|++..| .++||++||++++. .++++|++|+
T Consensus 23 ~~~~~~~~~~~~e~~~~~~~~~-~~-~~~~~~~~---~~~Y~~~~G-----~~~lr~~ia~~~~~-----~~~~~vi~t~ 87 (373)
T PRK07324 23 IAESCIDSLTLEELLALAGKNP-EA-FYQELGQK---KLTYGWIEG-----SPEFKEAVASLYQN-----VKPENILQTN 87 (373)
T ss_pred cccCCCCCCcHHHHHhccCcch-HH-HHHHHhcC---CccCCCCCC-----CHHHHHHHHHHhcC-----CChhhEEEcC
Confidence 4567899999999998877644 22 11222222 236888889 59999999999852 2467999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------cccc---cCCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFN---KDGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~---~~~~~~i~v~~P~ 239 (456)
|+++++.+++.+++.+|| +|+++.|+|+.+...++..|++++.++.|. +.++ ..+++++++++||
T Consensus 88 G~~~al~~~~~~l~~~gd----~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~ 163 (373)
T PRK07324 88 GATGANFLVLYALVEPGD----HVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNAN 163 (373)
T ss_pred ChHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCC
Confidence 999999999999999999 999999999999999999999998777643 2232 1367899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCC----CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
||||.+++. +|+++|+++|+||+|.+..+ .++....+++|+++||||.+|++|+|+||++++ +++++
T Consensus 164 NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~-~~li~ 242 (373)
T PRK07324 164 NPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAAN-EEVID 242 (373)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecC-HHHHH
Confidence 999999982 68899999999999986332 223344578999999999999999999999996 99999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
++++.+...+.+++.+.|.++..+|+ + .++++++.++.++++++.+.+.|++.+.+.+..|.|++
T Consensus 243 ~~~~~~~~~~~~~~~~~q~~a~~~l~---~--------~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~---- 307 (373)
T PRK07324 243 ILRKYRDYTMICAGVFDDMLASLALE---H--------RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVS---- 307 (373)
T ss_pred HHHHHhCcEEecCChHHHHHHHHHHc---C--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceE----
Confidence 99999887788899999999998886 2 26789999999999999999999987767778888877
Q ss_pred cccCCCCCceEEeecC--cc-HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 388 GRAFEPQPAFAWLKCE--QE-IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~--~~-~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|.|+.++ .+ .+.+.++++++||.++||+.|+. ++++||+++.+++.+++++++|++++
T Consensus 308 ---------~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~-~~~iRis~~~~~~~l~~~l~rl~~~l 368 (373)
T PRK07324 308 ---------TSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDL-EGHVRIGYCCDTETLKKGLKKLSEFL 368 (373)
T ss_pred ---------EEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCC-CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 5566554 23 44455567789999999999985 67999999888999999999999876
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=355.75 Aligned_cols=317 Identities=18% Similarity=0.241 Sum_probs=261.7
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCc-cCCCceEEEc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNA-ITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~-~~~~~~I~~t 169 (456)
.+..+++|+.|+|+.+.++.+.+... . ... ...|+++.| .++||++|++|+.. +|.. .. +++|++|
T Consensus 25 ~~~~~i~l~~~~p~~~~~~~~~~~~~-~-~~~----~~~Y~~~~G-----~~~lr~~ia~~l~~~~~~~~~~-~~~I~it 92 (364)
T PRK07865 25 HPDGIVDLSVGTPVDPVPPVIQEALA-A-AAD----APGYPTTAG-----TPELREAIVGWLARRRGVTGLD-PAAVLPV 92 (364)
T ss_pred cCCCEEEcCCCCCCCCCCHHHHHHHH-H-HHh----hCCCCCccC-----CHHHHHHHHHHHHHHcCCCCCC-cccEEEc
Confidence 44578999999998776555544321 1 111 136998888 59999999999965 4665 54 5799999
Q ss_pred cCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccCCCeEEEEcCCCCCCcccchH
Q 012785 170 TGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQS 248 (456)
Q Consensus 170 ~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NPtG~~~~~ 248 (456)
+|+++++.+++.++ +++|| +|++++|+|+.+...++..|++++.++ +.+.++..++++++++|||||||.+++.
T Consensus 93 ~G~~~~i~~~~~~l~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~l~~~~~~~v~~~~p~NPtG~~~~~ 167 (364)
T PRK07865 93 IGSKELVAWLPTLLGLGPGD----VVVIPELAYPTYEVGARLAGATVVRAD-SLTELGPQRPALIWLNSPSNPTGRVLGV 167 (364)
T ss_pred cChHHHHHHHHHHHcCCCCC----EEEECCCCcccHHHHHHhcCCEEEecC-ChhhCCcccceEEEEcCCCCCCCccCCH
Confidence 99999999988888 78999 999999999999999999999998886 4455655678999999999999999982
Q ss_pred --------HhhhcCcEEEeeecCCCCCCC--CCC--------CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHH
Q 012785 249 --------VVNRSGGILVHDLAYYWPQYT--SIT--------YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT 310 (456)
Q Consensus 249 --------l~~~~~~~iI~De~y~~~~~~--~~~--------~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~ 310 (456)
+|++++++||+||+|.+..+. +.. ...+++|+++||||.||+||+|+||++++ +++++.++
T Consensus 168 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~-~~~~~~~~ 246 (364)
T PRK07865 168 DHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGD-PALVAELL 246 (364)
T ss_pred HHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecC-HHHHHHHH
Confidence 678899999999999853221 111 12368999999999999999999999996 99999999
Q ss_pred HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccccc
Q 012785 311 KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 311 ~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~ 390 (456)
..+....++++.+.|.++.++|. + ++++++.++.++++++.+.+.|++.+ +.+..++|++
T Consensus 247 ~~~~~~~~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~------- 306 (364)
T PRK07865 247 EVRKHAGMMVPAPVQAAMVAALG---D---------DAHVREQRERYARRRAVLRPALEAAG-FRVDHSEAGL------- 306 (364)
T ss_pred HHHHhcCCCcCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCccE-------
Confidence 88776778899999999998886 2 46788899999999999999999875 6677778887
Q ss_pred CCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHH
Q 012785 391 FEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLS 452 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~ 452 (456)
|+|++++.+...+.+.++++||.++||..|+. .++++||+++.+++++++++++|+
T Consensus 307 ------~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 307 ------YLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred ------EEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 89999865566777888999999999998874 478999999888999999999986
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=359.63 Aligned_cols=324 Identities=18% Similarity=0.260 Sum_probs=261.9
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
+++|+|+.|+|++.+++.+.+... ..+... ...|++..| .++||+++|++++. +|....++++|++|+|+
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~ 90 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASI-RSLEQG---YTSYTANAG-----LLELRQEIAKYLKKRFAVSYDPNDEIIVTVGA 90 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence 478999999999875543332211 112222 346888888 59999999999965 47666544589999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEEEEcCCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i~v~~P~NP 241 (456)
++++.+++.+++++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||||
T Consensus 91 ~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NP 166 (378)
T PRK07682 91 SQALDVAMRAIINPGD----EVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNP 166 (378)
T ss_pred HHHHHHHHHHhCCCCC----EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCC
Confidence 9999999999999999 99999999999999999999998877653 233332 36789999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCCC----CCC---CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSI---TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~---~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
||.+++. +|+++++++|+||+|.+..+ .++ ....+++++++||||.||+||+|+||++++ ++++
T Consensus 167 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~i 245 (378)
T PRK07682 167 TGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP-VYFS 245 (378)
T ss_pred cCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcC-HHHH
Confidence 9999882 78899999999999986432 122 223478999999999999999999999997 9999
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+++.+......++++.+.|.++.++|+ ++ +.++++.++.++++++.+.+.|++++ +.+..|+|++
T Consensus 246 ~~l~~~~~~~~~~~~~~~q~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~p~g~~--- 310 (378)
T PRK07682 246 EAMLKIHQYSMMCAPTMAQFAALEALR---AG--------NDDVIRMRDSYRKRRNFFVTSFNEIG-LTCHVPGGAF--- 310 (378)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHh---CC--------hHHHHHHHHHHHHHHHHHHHHHHHCC-CccCCCCeeE---
Confidence 999888766678899999999999997 43 45788999999999999999999874 5677788888
Q ss_pred ccccCCCCCceEEeecCc---cHHHHHHH-HHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 387 LGRAFEPQPAFAWLKCEQ---EIEDCESF-LKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~---~~~~~~~~-l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +.+.+.+. ++++||.++||..|+. .++++|||++.+++++++++++|+++++
T Consensus 311 ----------~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~ 375 (378)
T PRK07682 311 ----------YAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVE 375 (378)
T ss_pred ----------EEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 89998742 34555554 5688999999999975 4789999998888999999999998863
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=364.83 Aligned_cols=331 Identities=17% Similarity=0.270 Sum_probs=256.4
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccc----ccc----CccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCcc-
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTI----VIP----GWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAI- 160 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~----~~~----~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~- 160 (456)
.++.++|+|+.++|.++. +++.+...... +.. ....+.+|++..| .++||++||+|++. ++...
T Consensus 35 ~~p~g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G-----~~~LR~aiA~~l~~~~~~~~~ 108 (468)
T PLN02450 35 KNPSGIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHG-----LPAFKNALAEFMSEIRGNKVT 108 (468)
T ss_pred cCCCeeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCC-----hHHHHHHHHHHHHHhhCCCCC
Confidence 345689999999998776 44443221110 000 1123456999889 59999999999964 45332
Q ss_pred CCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh-hcCCeEeeeccCc-cc-------ccc----
Q 012785 161 TENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD-CVKSRLYKWAGDA-KR-------FNK---- 227 (456)
Q Consensus 161 ~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~d~-~~-------l~~---- 227 (456)
.++++|++|+|+++++..++.+++++|| .|++++|+|+.|...+. ..|++++.++.+. ++ ++.
T Consensus 109 v~~~~Iiit~Ga~~al~~l~~~l~~pGd----~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~ 184 (468)
T PLN02450 109 FDPNKLVLTAGATSANETLMFCLAEPGD----AFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQ 184 (468)
T ss_pred cChHHeEEccChHHHHHHHHHHhCCCCC----EEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHH
Confidence 2468999999999999999999999999 99999999999998888 5899999887642 22 221
Q ss_pred -----CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCC-----CCCCC-----------CCCCCc
Q 012785 228 -----DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQ-----YTSIT-----------YPADHD 278 (456)
Q Consensus 228 -----~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~-----~~~~~-----------~~~~~~ 278 (456)
.++++++++|||||||.+++. +|++++++||+||+|.+.. +.++. ...+++
T Consensus 185 ~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~v 264 (468)
T PLN02450 185 AQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRV 264 (468)
T ss_pred HHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcE
Confidence 257899999999999999993 6889999999999998522 22211 125789
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
++++||||.||+||+|+||++++++.+.+.+.+... ...+|.++|.++..+|+ ++.. .++++++.++.++
T Consensus 265 i~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~Q~a~~~~L~---~~~~-----~~~~l~~~~~~l~ 334 (468)
T PLN02450 265 HIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSS--FGLVSSQTQYLLSALLS---DKKF-----TKNYLEENQKRLK 334 (468)
T ss_pred EEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhC---Cchh-----HHHHHHHHHHHHH
Confidence 999999999999999999999975666776665543 34579999999999997 4311 1347888999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---c------HHHHHHHHHhCCEEeecCCCCCC-
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---E------IEDCESFLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~------~~~~~~~l~~~gI~v~pg~~fg~- 428 (456)
++++.+.+.|++++ +.+.++.|++ |+|++++. + .+.+..+++++||.+.||+.|+.
T Consensus 335 ~rr~~l~~~L~~~g-i~~~~~~~g~-------------flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~ 400 (468)
T PLN02450 335 QRQKKLVSGLEAAG-IKCLKSNAGL-------------FCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCT 400 (468)
T ss_pred HHHHHHHHHHHHcC-CcccCCCceE-------------EEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCC
Confidence 99999999999884 6777788888 99999862 1 12344556779999999999974
Q ss_pred CCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 429 SPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
.+++|||+|+. +++++++++++|++++
T Consensus 401 ~~g~~Rl~f~~~~~~~l~~~l~ri~~~l 428 (468)
T PLN02450 401 EPGWFRVCFANMSEETLDLAMKRLKSFV 428 (468)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 57899999996 8899999999999876
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=351.13 Aligned_cols=318 Identities=16% Similarity=0.223 Sum_probs=258.0
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHH
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~ 174 (456)
+++|+.|+|++++++.+.+.... ... ....|+++.| .++||+++++|++. +|..+.++++|++|+|+++
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~--~~~---~~~~Y~~~~G-----~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ 71 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALID--AVP---EVSQYPSALG-----TKALREAISGWFERRFGVKLDPDAQVLPSAGSKE 71 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHH--HHh---ccCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHH
Confidence 68999999998866544433221 111 2446999888 59999999999965 4777654339999999999
Q ss_pred HHHHHHHHhcCCC---CCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-cc-------ccc---CCCeEEEEcCCCC
Q 012785 175 LFQAALYALSSQD---ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-KR-------FNK---DGPYIELVTSPNN 240 (456)
Q Consensus 175 al~~~~~~l~~~g---d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~~-------l~~---~~~~~i~v~~P~N 240 (456)
++..++.+++++| | +|++++|+|+.|...++..|++++.++.+. ++ ++. .+++++++++|||
T Consensus 72 ai~~~~~~~~~~g~~~d----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~N 147 (350)
T TIGR03537 72 AIFHFPLVFIDPEEDRR----RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHN 147 (350)
T ss_pred HHHHHHHHHcCCCCCCc----eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCC
Confidence 9999999999877 6 899999999999999999999999877652 23 221 3679999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCCC----CCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQYT----SIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~~----~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
|||.+++. +|++++++||+||+|.+..+. ++. ...+++|+++||||.+|++|+|+||++++ +++.+
T Consensus 148 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~-~~~~~ 226 (350)
T TIGR03537 148 PTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGD-EKLIS 226 (350)
T ss_pred CcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecC-HHHHH
Confidence 99999982 688899999999999753211 111 23578999999999999999999999986 99999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
++.........+.+.+.|.++.+.+. + ++++++.++.++++++.+.+.|++.+ +++..|.|++
T Consensus 227 ~~~~~~~~~~~~~~~~~q~~~~~~l~---~---------~~~~~~~r~~l~~~~~~~~~~l~~~g-~~~~~~~g~~---- 289 (350)
T TIGR03537 227 FLRKLRANFGVASPDFVQAAAKAAWS---D---------DNHVLERRKIFKRKRDLFIEFFNKVG-LEYLYPDATF---- 289 (350)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHhC---C---------cHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCeEE----
Confidence 99988776677777788888877765 2 46788899999999999999999875 5677777887
Q ss_pred cccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 388 GRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++. +...+.+.|.++||.|+||..|+. .++++||+++.+++++++++++|+++
T Consensus 290 ---------~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~~ 350 (350)
T TIGR03537 290 ---------YLWVKVPSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWERV 350 (350)
T ss_pred ---------EEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhcC
Confidence 89999975 466777778889999999999975 36899999977889999999999864
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=357.38 Aligned_cols=321 Identities=17% Similarity=0.207 Sum_probs=257.2
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCc-cCCCceEEEc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNA-ITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~-~~~~~~I~~t 169 (456)
.+..+|+|+.|+|++.+++.+...... .+... ....|++ .| .++||+++|+|++. +|.. +.++++|++|
T Consensus 42 ~~~~~i~L~~g~p~~~~~~~~~~~l~~-~~~~~--~~~~Y~~-~G-----~~~lr~aia~~~~~~~g~~~~~~~~~I~it 112 (410)
T PRK06290 42 PDMELIDMGVGEPDEMADESVVEVLCE-EAKKP--ENRGYAD-NG-----IQEFKEAAARYMEKVFGVKDIDPVTEVIHS 112 (410)
T ss_pred CCCCeEEcCCCCCCCCCCHHHHHHHHH-HHhCC--CCCCCCC-CC-----cHHHHHHHHHHHHHHcCCCcCCCcceEEEc
Confidence 456799999999998877655543221 11111 1235876 78 59999999999965 5766 6543489999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v~~P 238 (456)
+|++++|..++++++++|| +|++++|+|+.|...++..|++++.+++|.+ .++. .++++++++||
T Consensus 113 ~Gs~~al~~~~~~~~~~gd----~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP 188 (410)
T PRK06290 113 IGSKPALAMLPSCFINPGD----VTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYP 188 (410)
T ss_pred cCHHHHHHHHHHHhCCCCC----EEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECC
Confidence 9999999999999999999 9999999999999999999999998887643 2221 36789999999
Q ss_pred CCCCcccchH--------HhhhcCcEEEeeecCCCCCC----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 239 NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 239 ~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
|||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||.+|+||+|+||++++ +
T Consensus 189 ~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~-~ 267 (410)
T PRK06290 189 NNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGN-E 267 (410)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeC-H
Confidence 9999999993 68899999999999986322 1221 23467899999999999999999999996 9
Q ss_pred HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcc
Q 012785 304 EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQF 383 (456)
Q Consensus 304 ~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~ 383 (456)
++++.+...+.....+++.++|.++..+|+ + .+++++.++.++++++.+.+.|++.+ +.+.+|+|++
T Consensus 268 ~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~g~f 334 (410)
T PRK06290 268 LIVKAFATVKDNNDSGQFIAIQKAGIYALD---H---------PEITEKIREKYSRRLDKLVKILNEVG-FKAEMPGGTF 334 (410)
T ss_pred HHHHHHHHHHhccccCCcHHHHHHHHHHhh---C---------cHHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCeee
Confidence 999999988876777888899999999987 2 35788899999999999999999875 6677788888
Q ss_pred cccccccCCCCCceEEeecCc---------cHHHHHHHH-HhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHH
Q 012785 384 CTFLGRAFEPQPAFAWLKCEQ---------EIEDCESFL-KGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQR 450 (456)
Q Consensus 384 ~~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~l-~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~ 450 (456)
|+|++++. +...+.+.| ++.+|.+.||+.|+ +++||+++. ++|+.+++++.
T Consensus 335 -------------~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~---~~lRi~~~~~~~~~~~~~~~~~~ 398 (410)
T PRK06290 335 -------------YLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG---HFLRFSVTFEAKDEEEEDRILEE 398 (410)
T ss_pred -------------EEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc---CeEEEEEEcccccccchhHHHHH
Confidence 89999863 244455555 45678888988764 699999973 78899999999
Q ss_pred HHhhh
Q 012785 451 LSKIL 455 (456)
Q Consensus 451 L~~~l 455 (456)
|++.|
T Consensus 399 l~~~~ 403 (410)
T PRK06290 399 IKRRL 403 (410)
T ss_pred HHHHH
Confidence 98876
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=354.26 Aligned_cols=318 Identities=18% Similarity=0.240 Sum_probs=262.1
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHh-cCc-cCCCceEEE
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-GNA-ITENHHIVV 168 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-g~~-~~~~~~I~~ 168 (456)
..+..++||+.|+|++++++.+..... . .. ....|+++.| .++||+++++|+... |.. +. +++|++
T Consensus 18 ~~~~~~i~l~~~~p~~~~~~~~~~~~~-~-~~----~~~~Y~~~~G-----~~~lr~~ia~~~~~~~~~~~~~-~~~I~i 85 (357)
T TIGR03539 18 SHPDGIVDLSVGTPVDPVPPLIRAALA-A-AA----DAPGYPQTWG-----TPELREAIVDWLERRRGVPGLD-PTAVLP 85 (357)
T ss_pred hCCCCeEEccCCCCCCCCCHHHHHHHH-H-HH----hhCCCCcccC-----CHHHHHHHHHHHHHhcCCCCCC-cCeEEE
Confidence 455678999999998776655443321 1 11 1246999899 599999999999654 655 54 579999
Q ss_pred ccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccCCCeEEEEcCCCCCCcccch
Q 012785 169 GTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 169 t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NPtG~~~~ 247 (456)
|+|+++++..++.++ .++|| .|++++|+|+.+...++..|++++.++ |.+.++..+++++++++||||||.+++
T Consensus 86 t~G~~~~i~~~~~~l~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~-~~~~l~~~~~~~v~~~~p~NPtG~~~~ 160 (357)
T TIGR03539 86 VIGTKELVAWLPTLLGLGPGD----TVVIPELAYPTYEVGALLAGATPVAAD-DPTELDPVGPDLIWLNSPGNPTGRVLS 160 (357)
T ss_pred ccChHHHHHHHHHHHcCCCCC----EEEECCCCcHHHHHHHHhcCCEEeccC-ChhhcCccCccEEEEeCCCCCcCccCC
Confidence 999999999999888 79999 999999999999999999999998886 556676667899999999999999998
Q ss_pred H--------HhhhcCcEEEeeecCCCCCCC--C---CC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 248 S--------VVNRSGGILVHDLAYYWPQYT--S---IT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 248 ~--------l~~~~~~~iI~De~y~~~~~~--~---~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
. +|+++|++||+||+|.+..+. + +. ...+++|+++||||.|+++|+|+||++++ +++++++
T Consensus 161 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~-~~~~~~~ 239 (357)
T TIGR03539 161 VDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGD-PALVAEL 239 (357)
T ss_pred HHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecC-HHHHHHH
Confidence 2 688999999999999753221 1 11 12357999999999999999999999986 9999999
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
.+.+.....+++.+.|.++.++|+ + ++++++.++.++++++.+.+.|++.+ +.+..|.|++
T Consensus 240 ~~~~~~~~~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~~~~~~~~L~~~g-~~~~~p~~~~------ 300 (357)
T TIGR03539 240 LTVRKHAGLMVPAPVQAAMVAALG---D---------DGHVAEQKARYAARRAQLKPALEKAG-FRIDHSEAGL------ 300 (357)
T ss_pred HHHHhhcccCCCHHHHHHHHHHcC---C---------HHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCccE------
Confidence 888766678899999999998886 2 46788899999999999999999875 6777788887
Q ss_pred cCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHH
Q 012785 390 AFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLS 452 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~ 452 (456)
|+|++++.+...+.+.|.++||.+.||..|+. .++++||+++.+++++++++++|.
T Consensus 301 -------~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l~ 357 (357)
T TIGR03539 301 -------YLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARLT 357 (357)
T ss_pred -------EEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhhC
Confidence 89999876666777888999999999998864 468999999888899999998873
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=369.61 Aligned_cols=328 Identities=17% Similarity=0.240 Sum_probs=254.4
Q ss_pred cCCCCeEEecCCCC---CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 91 DGGERIINVDHGDP---TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 91 ~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
..+.++|+|+.|+| ++++|+.+..... ..+ .. ...|++..| .++||++||+|+...+....++++|+
T Consensus 143 ~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~-~~~-~~---~~~Y~~~~G-----~~~lReaia~~~~~~~~~~~~~~~I~ 212 (517)
T PRK13355 143 AAGTHILKLNIGNPAPFGFRTPDEVVYDMA-QQL-TD---TEGYSDSKG-----LFSARKAIMQYAQLKGLPNVDVDDIY 212 (517)
T ss_pred HcCCCeEEecCcCCCcCCCCCCHHHHHHHH-HHh-hc---CCCCCCCcC-----hHHHHHHHHHHHHhcCCCCCChhHEE
Confidence 45678999999999 4655655544322 112 12 236999999 59999999999976665422467999
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEEEEc
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIELVT 236 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i~v~ 236 (456)
+|+|+++++.+++.+++++|| +|++++|+|+.|...++..|++++.++.| .+.++. .++++++++
T Consensus 213 it~G~~eal~~~~~~l~~~Gd----~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~ 288 (517)
T PRK13355 213 TGNGVSELINLSMSALLDDGD----EVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVII 288 (517)
T ss_pred EeCcHHHHHHHHHHHhCCCCC----EEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEE
Confidence 999999999999999999999 99999999999999999999998876654 333432 367899999
Q ss_pred CCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCCC-CC-CcEEEecCccccCCCCceEEEEEEe
Q 012785 237 SPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITYP-AD-HDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 237 ~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~~-~~-~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
|||||||.++++ +|++++++||+||+|.+..+ .++... .+ .+++++||||+|+++|+|+||++++
T Consensus 289 nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~ 368 (517)
T PRK13355 289 NPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILS 368 (517)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEee
Confidence 999999999983 68899999999999985332 222222 22 4677899999999999999999964
Q ss_pred -CHHH----HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 302 -DMEV----AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 302 -~~~~----~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
++++ ++.+... .....+++.++|.++..+|. +.. ..+++++..++ +.++|+.+.+.|++++++++
T Consensus 369 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~---~~~-----~~~~~~~~~~~-~~~~r~~l~~~L~~~~g~~~ 438 (517)
T PRK13355 369 GNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALG---GHQ-----SVKDYLVPGGR-VYEQRELVYNALNAIPGISA 438 (517)
T ss_pred CchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhc---CCc-----cHHHHHHHHHH-HHHHHHHHHHHHhcCCCccc
Confidence 2433 4444333 22446789999999999886 211 12566666544 45668999999998867888
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc-------cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHH
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ-------EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFV 448 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l 448 (456)
..|+|+| |+|++++. +.+.+.++|+++||.|+||+.|+. .+++|||+|+.+++++++++
T Consensus 439 ~~p~g~f-------------y~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~ 505 (517)
T PRK13355 439 VKPKAAF-------------YIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAM 505 (517)
T ss_pred CCCCeee-------------EEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHH
Confidence 8999998 89988752 345677889999999999999974 57899999977999999999
Q ss_pred HHHHhhh
Q 012785 449 QRLSKIL 455 (456)
Q Consensus 449 ~~L~~~l 455 (456)
++|++++
T Consensus 506 ~rl~~~~ 512 (517)
T PRK13355 506 DRLADFF 512 (517)
T ss_pred HHHHHHH
Confidence 9999886
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=353.95 Aligned_cols=323 Identities=19% Similarity=0.240 Sum_probs=262.0
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc-eEEEcc
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH-HIVVGT 170 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~-~I~~t~ 170 (456)
.+.+|+|+.|+|++++++.+.+... ..+... ...|++..| .++||++++++++. +|.... ++ +|++|+
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~-~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~l~~~~g~~~~-~~~~I~~t~ 96 (387)
T PRK07683 27 YDNLISLTIGQPDFPTPSHVKEAAK-RAITEN---YTSYTHNAG-----LLELRKAACNFVKDKYDLHYS-PESEIIVTI 96 (387)
T ss_pred cCCeEEecCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-CCCcEEEeC
Confidence 3578999999998776554443221 112211 346888788 59999999999964 576665 45 899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcccc-------cc---CCCeEEEEcCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRF-------NK---DGPYIELVTSPNN 240 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l-------~~---~~~~~i~v~~P~N 240 (456)
|+++++.+++++++++|| +|++++|+|+.+...++..|++++.++.|.+++ +. .+++++++++|||
T Consensus 97 G~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~N 172 (387)
T PRK07683 97 GASEAIDIAFRTILEPGT----EVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSN 172 (387)
T ss_pred ChHHHHHHHHHHhCCCCC----EEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCC
Confidence 999999999999999999 999999999999999999999999887764433 21 3578999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCC----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
|||.+++. +|+++|+++|+||+|.+..+ .++. +..+++|+++||||.+|+||+|+||++++ +++
T Consensus 173 PtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~-~~l 251 (387)
T PRK07683 173 PTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAP-SYL 251 (387)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcC-HHH
Confidence 99999872 68889999999999985322 2222 23568999999999999999999999997 899
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++++.+.......+++.+.|.++..+|. ++ +.++++.++.++++++.+.+.|++.+ +.+..++|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-- 317 (387)
T PRK07683 252 AKHILKVHQYNVTCASSISQYAALEALT---AG--------KDDAKMMRHQYKKRRDYVYNRLISMG-LDVEKPTGAF-- 317 (387)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHh---CC--------hHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCeeE--
Confidence 9999887665567788899999999987 33 46788899999999999999998874 6777788887
Q ss_pred cccccCCCCCceEEeecCc---cH-HHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ---EI-EDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~---~~-~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|+.++. +. +.+.++++++||.++||+.|+. +++++||+++.+++++++++++|.+++
T Consensus 318 -----------~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l 381 (387)
T PRK07683 318 -----------YLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFL 381 (387)
T ss_pred -----------EEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 89998753 33 3445667899999999999964 468999999888999999999999876
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=357.05 Aligned_cols=327 Identities=17% Similarity=0.199 Sum_probs=257.0
Q ss_pred cCCCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHh-------cCc
Q 012785 91 DGGERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-------GNA 159 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-------g~~ 159 (456)
..++++|+|+.|+|+ +.+++.+.+... ..+... ....|+++.| .++||++||+|++.. |..
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~-~~~~~~--~~~~Y~~~~G-----~~~Lr~aia~~~~~~~~~~~~~~~~ 101 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALV-EAVDSQ--ECNGYPPTVG-----SPEAREAVATYWRNSFVHKESLKST 101 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHH-HHhhcC--CCCCCCCCCC-----cHHHHHHHHHHHHhhccccccccCC
Confidence 356789999999997 334444443221 112221 2357999888 599999999999752 344
Q ss_pred cCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---C
Q 012785 160 ITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---D 228 (456)
Q Consensus 160 ~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~ 228 (456)
+ ++++|++|+|+++++.+++++++.+|| +|++++|+|+.+...++..|++++.++++. +.++. .
T Consensus 102 ~-~~~~i~it~G~~~al~~~~~~~~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~ 176 (412)
T PTZ00433 102 I-KKDNVVLCSGVSHAILMALTALCDEGD----NILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD 176 (412)
T ss_pred C-ChhhEEEeCChHHHHHHHHHHhcCCCC----EEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc
Confidence 4 468999999999999999999999999 999999999999999999999998776643 23322 2
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCCC--CCCcEEEecCccccCCCCc
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITYP--ADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~~--~~~~i~i~S~SK~~g~~G~ 293 (456)
++++++++|||||||.+++. +|+++|++||+||+|.+..+ .++... ..++|+++||||.||+||+
T Consensus 177 ~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGl 256 (412)
T PTZ00433 177 RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGW 256 (412)
T ss_pred CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCe
Confidence 57899999999999999882 68889999999999986332 222221 2358999999999999999
Q ss_pred eEEEEEEeC-----HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012785 294 RIGWALVKD-----MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV 368 (456)
Q Consensus 294 RiG~l~~~~-----~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L 368 (456)
|+||+++++ +++++.+.+... ...+++.+.|.++..+|. ++ .++++++.++.++++++.+.+.|
T Consensus 257 RlG~~i~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~---~~-------~~~~~~~~~~~~~~~r~~l~~~L 325 (412)
T PTZ00433 257 RLGWLLLVDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALL---NT-------PQEHLEQIVAKLEEGAMVLYNHI 325 (412)
T ss_pred eEEEEEEeCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHh---cC-------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999721 457777776543 346899999999999887 22 26899999999999999999999
Q ss_pred HhcCCccccCCCCcccccccccCCCCCceEEeecCc-------cHHHHHHHH-HhCCEEeecCCCCCCCCCeEEEEecCC
Q 012785 369 QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------EIEDCESFL-KGNKILTRSGKHFGFSPKYVRISMLDR 440 (456)
Q Consensus 369 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~~~~~~~~l-~~~gI~v~pg~~fg~~~~~iRis~~~~ 440 (456)
++..++.+..|+|++ |+|++++. +...+.+.| +++||.++||+.|+. ++++||+|+..
T Consensus 326 ~~~~~~~~~~p~gg~-------------f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~~~iRis~~~~ 391 (412)
T PTZ00433 326 GECIGLSPTMPRGSM-------------FLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM-PGFTRLTISRP 391 (412)
T ss_pred hcCCCCcccCCCeeE-------------EEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC-CCeEEEEecCC
Confidence 886556677777887 99998853 234455554 578999999999975 78999999888
Q ss_pred hhHHHHHHHHHHhhh
Q 012785 441 DENYNLFVQRLSKIL 455 (456)
Q Consensus 441 ~e~i~~~l~~L~~~l 455 (456)
++++++++++|.+++
T Consensus 392 ~e~l~~al~~l~~~~ 406 (412)
T PTZ00433 392 VEVLREAVERIKAFC 406 (412)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999999999876
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=345.12 Aligned_cols=325 Identities=16% Similarity=0.277 Sum_probs=268.9
Q ss_pred ecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHH
Q 012785 99 VDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQ 177 (456)
Q Consensus 99 l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~ 177 (456)
|+.|+|++++|..+.+..... + ... ..++|.+..| .++|+++|++.+.. +|....+.++|++|+|+.++|.
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~-~-~~~-~~~qYt~~~G-----~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~ 107 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNA-A-KEP-STNQYTRGYG-----LPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAIS 107 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHH-h-ccc-hhccccccCC-----chHHHHHHHHHHHHHhccccCCcccEEEecCchHHHH
Confidence 999999999998777643322 2 221 2467888889 59999999999865 6666667788999999999999
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeee--------------ccCcccccc---CCCeEEEEcCCCC
Q 012785 178 AALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKW--------------AGDAKRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 178 ~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~--------------~~d~~~l~~---~~~~~i~v~~P~N 240 (456)
.++++++++|| +|++.+|.|+.|...++++|.+.+.+ .+|.+.++. .++|+|++|+|||
T Consensus 108 ~~~~~l~~~GD----eVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhN 183 (420)
T KOG0257|consen 108 SALLGLLNPGD----EVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHN 183 (420)
T ss_pred HHHHHHcCCCC----EEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCC
Confidence 99999999999 99999999999999999999887643 345555543 3789999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCC--------CCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWP--------QYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~--------~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|||.+.++ +|+++|+++|.||+|.+. ....++...+++|.++||||+||+.|||+||++++ +.
T Consensus 184 PtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp-~~ 262 (420)
T KOG0257|consen 184 PTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGP-KH 262 (420)
T ss_pred CcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeech-HH
Confidence 99999994 899999999999999842 22345677899999999999999999999999996 99
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+...+........+..+.+.|.+.++++..-.. .. ......+...+.+.|+++|+.|.+.|.+++ +.+..|+|++
T Consensus 263 L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~-~~--~p~~~y~~~~~~~~y~~krdil~k~L~~lg-~~v~~p~gay- 337 (420)
T KOG0257|consen 263 LYSALFPVHQNFVFTCPTPIQEASAAAFALELA-CL--QPGGSYFITELVKEYKEKRDILAKALEELG-LKVTGPEGAY- 337 (420)
T ss_pred hhhhHHHHhhccccccCcHHHHHHHHHHhhhhh-cc--CCcchhHHHHHHHHHHHHHHHHHHHHHhcC-CccccCCCce-
Confidence 999999998888999999999999988873210 00 000124566699999999999999999994 8888999999
Q ss_pred ccccccCCCCCceEEeecC---------------ccHHHHHHHHHhCCEEeecCCCCCC------CCCeEEEEecCChhH
Q 012785 385 TFLGRAFEPQPAFAWLKCE---------------QEIEDCESFLKGNKILTRSGKHFGF------SPKYVRISMLDRDEN 443 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~---------------~~~~~~~~~l~~~gI~v~pg~~fg~------~~~~iRis~~~~~e~ 443 (456)
|+|++++ .+...+..++++.|+.+.|++.|+. ..+++|+++..+++.
T Consensus 338 ------------yl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~ 405 (420)
T KOG0257|consen 338 ------------YLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADET 405 (420)
T ss_pred ------------EEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHH
Confidence 8999886 1234467889999999999999985 246899999889999
Q ss_pred HHHHHHHHHh
Q 012785 444 YNLFVQRLSK 453 (456)
Q Consensus 444 i~~~l~~L~~ 453 (456)
++.++++|++
T Consensus 406 L~~a~e~l~~ 415 (420)
T KOG0257|consen 406 LRKAIERLKK 415 (420)
T ss_pred HHHHHHHHhh
Confidence 9999999984
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=352.69 Aligned_cols=324 Identities=20% Similarity=0.268 Sum_probs=264.5
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
+.+|+|+.|+|++++++.+.+... ..+... ...|++..| .++||+++++++.. +|..+. +++|++|+|+
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~G-----~~~lr~~la~~~~~~~~~~~~-~~~i~~t~g~ 93 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAA-AALADG---ETFYTHNLG-----IPELREALARYVSRLHGVATP-PERIAVTSSG 93 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCcC-cceEEEeCCh
Confidence 468999999999987766654422 122222 235888888 59999999999965 465554 5799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc---------ccccc---CCCeEEEEcCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA---------KRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~---------~~l~~---~~~~~i~v~~P~N 240 (456)
++++.+++.+++++|| +|++++|+|+.+...++..|++++.++.|. +.++. .+++++++++|||
T Consensus 94 ~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~N 169 (382)
T PRK06108 94 VQALMLAAQALVGPGD----EVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNN 169 (382)
T ss_pred HHHHHHHHHHhcCCCC----EEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCC
Confidence 9999999999999999 999999999999999999999998777653 22322 2578899999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCCC------C---CCCCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------S---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
|||.+++. +|+++++++|+||+|.+..+. + +....+++++++||||.||++|+|+||++++ +
T Consensus 170 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~-~ 248 (382)
T PRK06108 170 PTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAP-P 248 (382)
T ss_pred CCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCC-H
Confidence 99999872 688999999999999864322 1 1122468999999999999999999999997 9
Q ss_pred HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcc
Q 012785 304 EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQF 383 (456)
Q Consensus 304 ~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~ 383 (456)
++++.+.+.......+++.+.|.++..+|. ++ ++++++.+++++++++.+.+.|++++++.+..|+|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~ 317 (382)
T PRK06108 249 ALGQVLEKLIEYNTSCVAQFVQRAAVAALD---EG--------EDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAM 317 (382)
T ss_pred HHHHHHHHHHHhcccCCChHHHHHHHHHHh---CC--------hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeE
Confidence 999999888766678899999999999997 33 5788899999999999999999887667777777877
Q ss_pred cccccccCCCCCceEEeecCc--cHHHHHH-HHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 384 CTFLGRAFEPQPAFAWLKCEQ--EIEDCES-FLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 384 ~~~~~~~~~~~~~f~~~~~~~--~~~~~~~-~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +..++.+ +++++||.++||+.|+. .++++||+++.+++++++++++|+++++
T Consensus 318 -------------~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 318 -------------YAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred -------------EEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 89999864 3444544 55789999999999964 4789999998889999999999998763
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=360.59 Aligned_cols=331 Identities=18% Similarity=0.298 Sum_probs=255.4
Q ss_pred cCCCCeEEecCCCCCC--Cc-hhHhhhccccccc-ccC---ccccccccCCCCcccCCCHHHHHHHHHHHHH-hc--Ccc
Q 012785 91 DGGERIINVDHGDPTM--YE-KYWQKVGDKTTIV-IPG---WQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VG--NAI 160 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~--~~-~~~~~~~~~~~~~-~~~---~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g--~~~ 160 (456)
.++.++|+|+..++.+ .. ++|+......... ..+ ......|++..| .++||++||+|++. +| ..+
T Consensus 43 ~np~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G-----~~~LR~aiA~~l~~~~g~~v~v 117 (496)
T PLN02376 43 RNPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHG-----LKKFRQAIAHFMGKARGGKVTF 117 (496)
T ss_pred cCCCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCC-----cHHHHHHHHHHHHHHhCCCCcC
Confidence 3456899999999876 33 5666653221111 111 222456888899 59999999999965 45 334
Q ss_pred CCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh-hcCCeEeeeccCc--------cccc-----
Q 012785 161 TENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD-CVKSRLYKWAGDA--------KRFN----- 226 (456)
Q Consensus 161 ~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~d~--------~~l~----- 226 (456)
++++|++|+|+++++++++.+|++||| .|++++|+|+.+...+. ..|++++.++++. +.++
T Consensus 118 -~pe~Ivit~Ga~~al~~l~~~l~~pGD----~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~ 192 (496)
T PLN02376 118 -DPERVVMSGGATGANETIMFCLADPGD----VFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKK 192 (496)
T ss_pred -ChhhEEEccchHHHHHHHHHHhCCCCC----EEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHH
Confidence 467999999999999999999999999 99999999999999887 5899999887632 2232
Q ss_pred ----cCCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCC-----CCCCC---C-------CCCCcE
Q 012785 227 ----KDGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQ-----YTSIT---Y-------PADHDL 279 (456)
Q Consensus 227 ----~~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~-----~~~~~---~-------~~~~~i 279 (456)
..++++++++|||||||.++++ +|++++++||+||+|.+.. +.++. . ..++++
T Consensus 193 a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~ 272 (496)
T PLN02376 193 AQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIH 272 (496)
T ss_pred HHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEE
Confidence 1257899999999999999993 7889999999999998632 22321 1 013567
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
+++||||.||+||+|+||++++++.+.+.++.... ...+|.+.|.++..+|+ ++. -.++++++.++.+++
T Consensus 273 vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~--~~~vs~~~Q~a~~~~L~---d~~-----~~~~~l~~~r~~l~~ 342 (496)
T PLN02376 273 IVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSS--FGLVSSQTQLMLASMLS---DDQ-----FVDNFLMESSRRLGI 342 (496)
T ss_pred EEEeccccCCCCcceEEEEEECCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhC---Chh-----HHHHHHHHHHHHHHH
Confidence 79999999999999999999976777776655543 34589999999999997 431 025678888999999
Q ss_pred HHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc---------HHHHHH-HHHhCCEEeecCCCCCC-
Q 012785 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE---------IEDCES-FLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 360 ~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~---------~~~~~~-~l~~~gI~v~pg~~fg~- 428 (456)
+++.+.+.|++.+ +.+..+.||+ |+|++++.. ...+.+ +++++||.+.||+.|+.
T Consensus 343 r~~~l~~~L~~~g-i~~~~~~aG~-------------flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~ 408 (496)
T PLN02376 343 RHKVFTTGIKKAD-IACLTSNAGL-------------FAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCT 408 (496)
T ss_pred HHHHHHHHHHHCC-CcccCCCceE-------------EEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCC
Confidence 9999999999864 6667778888 999998531 123334 45567999999999974
Q ss_pred CCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 429 SPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
.+++|||+|+. +++.+++++++|++++
T Consensus 409 ~~g~~Ri~fa~~~~~~l~~al~rl~~~l 436 (496)
T PLN02376 409 EPGWFRICFANMDDDTLHVALGRIQDFV 436 (496)
T ss_pred CCCEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 57899999986 8899999999999876
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=353.77 Aligned_cols=327 Identities=19% Similarity=0.245 Sum_probs=264.1
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..+..+++|+.|+|+...++.+..... ...... ....|+++.| .++||++|++|++. +|....+.++|++|
T Consensus 26 ~~~~~~i~l~~g~p~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~G-----~~~lr~aia~~~~~~~g~~~~~~~~i~~t 97 (395)
T PRK08175 26 RRGEDIIDFSMGNPDGPTPPHIVEKLC-EVAQRP--DTHGYSTSRG-----IPRLRRAISRWYQDRYDVDIDPESEAIVT 97 (395)
T ss_pred hcCCCeEEcCCCCCCCCCCHHHHHHHH-HHHhCC--CcCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCcEEEc
Confidence 456789999999999876654443221 111111 1346999999 59999999999964 57766543489999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc-----ccc------CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR-----FNK------DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~-----l~~------~~~~~i~v~~P 238 (456)
+|+++++.+++..++++|| +|++++|+|+.+...++..|.+++.++.|.++ ++. .+++++++++|
T Consensus 98 ~G~~~~l~~~~~~~~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p 173 (395)
T PRK08175 98 IGSKEGLAHLMLATLDHGD----TVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP 173 (395)
T ss_pred cCcHHHHHHHHHHhCCCCC----EEEEcCCCCcchHHHHHHcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCC
Confidence 9999999999999999999 99999999999999999999999888776432 221 25789999999
Q ss_pred CCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 239 NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 239 ~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||||.+++. +|+++|+++|+||+|.+..+ .++. ...+++|+++||||.||+||+|+||++++
T Consensus 174 ~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~- 252 (395)
T PRK08175 174 SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGN- 252 (395)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCC-
Confidence 9999999983 78899999999999975322 1221 12467899999999999999999999996
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++++.+.+.....+++.+.|.++..+|. +. +++++++++.++++++.+.+.|+..+ +.+..|.|+
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~p~~g 320 (395)
T PRK08175 253 PELVSALARIKSYHDYGTFTPLQVAAIAALE---GD--------QQCVRDIAEQYKRRRDVLVKGLHEAG-WMVEMPKAS 320 (395)
T ss_pred HHHHHHHHHHHhhcccCCCcHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHHHcC-CcccCCCEE
Confidence 9999999988877778888999999998886 22 67899999999999999999999885 666677777
Q ss_pred ccccccccCCCCCceEEeecCcc-----HHHHHH-HHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQE-----IEDCES-FLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~~-----~~~~~~-~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+ |+|++++.. ...+.+ +++++||.|.||+.|+. .++++||+++.+++.+++++++|++++
T Consensus 321 ~-------------~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l 387 (395)
T PRK08175 321 M-------------YVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMF 387 (395)
T ss_pred E-------------EEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 7 999999742 345554 56689999999999974 467999999778899999999999876
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=353.00 Aligned_cols=324 Identities=20% Similarity=0.268 Sum_probs=264.4
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++++|+.|.|++++++.+.+... ..+.+. ...|+++.| .++||+++++++.. +|.... +++|++|+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~G-----~~~lr~~ia~~l~~~~g~~~~-~~~i~~t~ 100 (402)
T PRK06107 31 AGRSIVDLTVGEPDFDTPDHIKQAAV-AAIERG---ETKYTLVNG-----TPALRKAIIAKLERRNGLHYA-DNEITVGG 100 (402)
T ss_pred ccCCEEEcCCCCCCCCCCHHHHHHHH-HHHHcC---CCCCCCCCC-----CHHHHHHHHHHHHHhcCCCCC-hhhEEEeC
Confidence 45678999999999886655543322 222222 246999999 59999999999965 466665 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i~v~~P~ 239 (456)
|+++++..++.+++++|| +|++++|+|..|...+...+.+.+.++.+ .+.++. .++++++++|||
T Consensus 101 G~~~al~~~~~~~~~~gd----~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~ 176 (402)
T PRK06107 101 GAKQAIFLALMATLEAGD----EVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPS 176 (402)
T ss_pred CHHHHHHHHHHHhcCCCC----EEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCC
Confidence 999999999999999999 99999999999999988888887766543 223332 257889999999
Q ss_pred CCCcccchH--------Hhhhc-CcEEEeeecCCCCCC-----CCCC----CCCCCcEEEecCccccCCCCceEEEEEEe
Q 012785 240 NPDGSVRQS--------VVNRS-GGILVHDLAYYWPQY-----TSIT----YPADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~-~~~iI~De~y~~~~~-----~~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
||||.+++. +|+++ ++++|+||+|.+..+ .++. ...+++|+++||||.||+||+|+||++++
T Consensus 177 NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~ 256 (402)
T PRK06107 177 NPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGP 256 (402)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecC
Confidence 999999972 67887 999999999975322 2221 12368999999999999999999999997
Q ss_pred CHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 302 DMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
+++++.+.........+++.+.|.++..+|. ++ +.++++.++.++++++.+.+.|++++++.+.+|.|
T Consensus 257 -~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~g 324 (402)
T PRK06107 257 -ADLIAAINKLQSQSSSCPSSISQAAAAAALN---GD--------QSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDG 324 (402)
T ss_pred -HHHHHHHHHHHHhcccCCChHHHHHHHHHhc---CC--------hHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCc
Confidence 9999999999887788999999999999996 33 57899999999999999999999876678888889
Q ss_pred cccccccccCCCCCceEEeecCc-------------c-HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHH
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ-------------E-IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLF 447 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~-------------~-~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~ 447 (456)
++ |+|++++. + .+.+..+++++||.++||+.||. .+++||+|+.++|+++++
T Consensus 325 g~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~-~~~iRis~~~~~e~l~~~ 390 (402)
T PRK06107 325 AF-------------YLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL-SPYFRLSIATSLETLEEA 390 (402)
T ss_pred ce-------------EEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC-CCeEEEEeCCCHHHHHHH
Confidence 88 89998631 2 34456777899999999999986 689999999899999999
Q ss_pred HHHHHhhh
Q 012785 448 VQRLSKIL 455 (456)
Q Consensus 448 l~~L~~~l 455 (456)
+++|++++
T Consensus 391 l~~l~~~l 398 (402)
T PRK06107 391 CARIERAV 398 (402)
T ss_pred HHHHHHHH
Confidence 99999876
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=352.28 Aligned_cols=326 Identities=19% Similarity=0.269 Sum_probs=260.6
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++++++|+.|+|++++++.+.+... ..+... ...|++..| .++||+++|+|++. +|..+. +++|++|+
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~~-~~~i~~t~ 97 (388)
T PRK07337 28 AGRDIIHMGIGEPDFTAPEPVVEAAA-RALRRG---VTQYTSALG-----LAPLREAIAAWYARRFGLDVA-PERIVVTA 97 (388)
T ss_pred cCCCEEEeCCcCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-hHhEEEec
Confidence 45688999999999876654443221 112222 346888888 59999999999964 566664 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v~~P~ 239 (456)
|+++++.+++.+++++|| +|++++|+|+.+...++..|++++.++.|.+ .++. .+++++++++||
T Consensus 98 G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~ 173 (388)
T PRK07337 98 GASAALLLACLALVERGD----EVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPS 173 (388)
T ss_pred CcHHHHHHHHHHhcCCCC----EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCC
Confidence 999999999999999999 9999999999999999999999987776532 2222 367899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCCC----CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
||||.+++. +|+++++++|+||+|.+..+. +.....+++|+++||||.||+||+|+||++++ +++++
T Consensus 174 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~-~~l~~ 252 (388)
T PRK07337 174 NPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVP-EALVG 252 (388)
T ss_pred CCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecC-HHHHH
Confidence 999999982 678899999999999864332 22233578999999999999999999999997 89999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
++.+.......+++.+.|.++..++. ++. .+++++.++.++++++.+.+.|++.+......|.|++
T Consensus 253 ~l~~~~~~~~~~~s~~~q~~~~~~l~---~~~-------~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~---- 318 (388)
T PRK07337 253 TFEKLAQNLFICASALAQHAALACFE---PDT-------LAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAF---- 318 (388)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHhc---cCc-------hHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeE----
Confidence 99988776677889999999998886 331 2456788999999999999999987532224567777
Q ss_pred cccCCCCCceEEeecCc-------cHHH-HHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 388 GRAFEPQPAFAWLKCEQ-------EIED-CESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~-------~~~~-~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +..+ +.++++++||.+.||+.|+. .++++||+++.+++++++++++|++++
T Consensus 319 ---------f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 319 ---------YVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred ---------EEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 99999862 3344 44567889999999999975 468999999888999999999999875
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=354.29 Aligned_cols=327 Identities=15% Similarity=0.187 Sum_probs=254.9
Q ss_pred CCCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 92 GGERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 92 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
.++++++|+.|+|+ +++++.+.+... ..+... ....|++..| .++||++++++++..+... ++++|+
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~g-----~~~lr~aia~~~~~~~~~~-~~~~i~ 99 (401)
T TIGR01264 29 PEKPMIKLSIGDPTVFGNLPTDPEVMQAMK-DSLDSG--KYNGYAPTVG-----ALSAREAIASYYHNPDGPI-EADDVV 99 (401)
T ss_pred cCCCeeecCCCCCCCcCCCCCCHHHHHHHH-HHHhcc--CCCCCCCCCC-----CHHHHHHHHHHHhhcCCCC-CHHHEE
Confidence 34688999999985 554544443221 112222 1345888888 5999999999998766665 467999
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEEEEc
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIELVT 236 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i~v~ 236 (456)
+|+|+++++.+++.+++++|| +|++++|+|+.+...++..|++++.++++ .+.++. .++++++++
T Consensus 100 ~t~G~~~al~~~~~~l~~~gd----~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~ 175 (401)
T TIGR01264 100 LCSGCSHAIEMCIAALANAGQ----NILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVN 175 (401)
T ss_pred ECcChHHHHHHHHHHhCCCCC----EEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEc
Confidence 999999999999999999999 99999999999999999999998876553 233322 356899999
Q ss_pred CCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCCC--CCCcEEEecCccccCCCCceEEEEEEe
Q 012785 237 SPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITYP--ADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 237 ~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~~--~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
|||||||.+++. +|++++++||+||+|.+..+ .++... ..++|+++||||.|++||+|+||++++
T Consensus 176 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~ 255 (401)
T TIGR01264 176 NPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIH 255 (401)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEec
Confidence 999999999872 67889999999999986332 222222 235899999999999999999999997
Q ss_pred CH-----HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 302 DM-----EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 302 ~~-----~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
++ ++++.+..... ...+++.+.|.++..+|. +. .++++++.++.++++|+.+.+.|++++++.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~---~~-------~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~ 324 (401)
T TIGR01264 256 DRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILL---RT-------PQEYFDGTLSVLESNAMLCYGALAAVPGLRP 324 (401)
T ss_pred CcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHH---hC-------cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 42 34455544432 356789999999999997 22 2679999999999999999999998755666
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc-------cHHHH-HHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHH
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ-------EIEDC-ESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFV 448 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~~~~~-~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l 448 (456)
..|+||+ |+|++++. +...+ ..+++++||.++||+.|+. ++++||+++.+++++++++
T Consensus 325 ~~p~~g~-------------f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-~~~iRis~~~~~~~l~~~l 390 (401)
T TIGR01264 325 VMPSGAM-------------YMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEY-PGFFRVVLTVPVVMMEEAC 390 (401)
T ss_pred cCCCeee-------------EEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCC-CCeEEEEEcCCHHHHHHHH
Confidence 6777777 99999742 23444 4455689999999999974 7899999988889999999
Q ss_pred HHHHhhhC
Q 012785 449 QRLSKILS 456 (456)
Q Consensus 449 ~~L~~~l~ 456 (456)
++|+++++
T Consensus 391 ~rl~~~~~ 398 (401)
T TIGR01264 391 SRIQEFCE 398 (401)
T ss_pred HHHHHHHh
Confidence 99998763
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=351.00 Aligned_cols=325 Identities=16% Similarity=0.184 Sum_probs=260.7
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
...+++|+.|.|+.+.|+.+.+... ..+..+ ...|++..| .++||++++++++. +|....+.++|++|+|
T Consensus 25 ~~~~i~l~~g~p~~~~p~~~~~~~~-~~~~~~---~~~Y~~~~G-----~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G 95 (387)
T PRK08912 25 EHGAINLGQGFPDDPGPEDVRRAAA-DALLDG---SNQYPPMMG-----LPELRQAVAAHYARFQGLDLDPETEVMVTSG 95 (387)
T ss_pred hCCeEEccCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCCCcccEEEeCC
Confidence 3578999999998875544433211 112222 346999999 59999999999964 5666653339999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NP 241 (456)
+++++.+++.+++++|| +|++++|+|+.+...++..|++++.++.|. +.++. .++++++++|||||
T Consensus 96 ~~~al~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NP 171 (387)
T PRK08912 96 ATEALAAALLALVEPGD----EVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNP 171 (387)
T ss_pred cHHHHHHHHHHhcCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCC
Confidence 99999999999999999 999999999999999999999988776643 23322 36789999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCC-----CCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQ-----YTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~-----~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
||.+++. +|+++++++|+||+|.+.. +.++. ...+++|+++||||.||++|+|+||++++ +++
T Consensus 172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~~ 250 (387)
T PRK08912 172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA-PPL 250 (387)
T ss_pred cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC-HHH
Confidence 9999882 6889999999999997422 22322 22468999999999999999999999996 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+.+......++.++..|.++...|. .. ++++++.++.++++++.+.+.|+..+ +.+.++.|++
T Consensus 251 ~~~l~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~g~~-- 316 (387)
T PRK08912 251 LRVLAKAHQFLTFTTPPNLQAAVAYGLG---KP--------DDYFEGMRADLARSRDRLAAGLRRIG-FPVLPSQGTY-- 316 (387)
T ss_pred HHHHHHHHhhccccCChHHHHHHHHHHh---CC--------HHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcce--
Confidence 9999888776678888889999888886 22 57889999999999999999999875 6677777887
Q ss_pred cccccCCCCCceEEeecCc-----cHHHHHHH-HHhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 386 FLGRAFEPQPAFAWLKCEQ-----EIEDCESF-LKGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~-----~~~~~~~~-l~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+.+. ++++||.+.||..|+. ..+++||+|+.+++++++++++|+++++
T Consensus 317 -----------~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 317 -----------FLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARR 385 (387)
T ss_pred -----------EEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 89999853 34445554 5678999999999953 3689999998889999999999998763
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.47 Aligned_cols=323 Identities=20% Similarity=0.274 Sum_probs=260.3
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
+++|+|+.|+|++.+++.+.+... ..+... ...|++..| .++||++++++++. +|....++++|++|+|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~ 100 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAK-RAIDAN---QSHYTGMAG-----LLELRQAAADFVKEKYNLDYAPENEILVTIGA 100 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence 578999999999876654443211 112221 246888888 59999999999964 67766655799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc------CCCeEEEEcCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK------DGPYIELVTSPN 239 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~------~~~~~i~v~~P~ 239 (456)
++++++++++++.+|| +|++++|+|+.+...++..|.+++.++.|. +.++. .+++++++++||
T Consensus 101 ~~al~~~~~~~~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~ 176 (391)
T PRK07309 101 TEALSASLTAILEPGD----KVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPA 176 (391)
T ss_pred HHHHHHHHHHhcCCCC----EEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCC
Confidence 9999999999999999 999999999999999999999988776543 33321 247899999999
Q ss_pred CCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 240 NPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 240 NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
||||.+++ ++|+++++++|+||+|.+..+ .++. ...+++|+++||||.||+||+|+||++++ +++
T Consensus 177 NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~-~~~ 255 (391)
T PRK07309 177 NPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAP-AEF 255 (391)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeC-HHH
Confidence 99999987 267899999999999986332 1221 23578999999999999999999999997 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++++.........+++.+.|.++..+|+ ++ ..+....++.++++++.+.+.|++.+ +.+..|.|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~p~gg~-- 321 (391)
T PRK07309 256 TAQLIKSHQYLVTAATTMAQFAAVEALT---NG--------KDDALPMKKEYIKRRDYIIEKMTDLG-FKIIKPDGAF-- 321 (391)
T ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHh---CC--------hhHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeE--
Confidence 9999887665667889999999999987 33 23456778899999999999999875 6777788887
Q ss_pred cccccCCCCCceEEeecCc----cHHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ----EIEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~----~~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +...+. ++++++||.+.||..|+. ++++|||+++.+++++++++++|++++
T Consensus 322 -----------~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~ 386 (391)
T PRK07309 322 -----------YIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYM 386 (391)
T ss_pred -----------EEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 89998863 234444 567789999999999975 578999999888899999999999876
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=350.60 Aligned_cols=327 Identities=18% Similarity=0.233 Sum_probs=259.0
Q ss_pred cCCCCeEEecCCCC---CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceE
Q 012785 91 DGGERIINVDHGDP---TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHI 166 (456)
Q Consensus 91 ~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I 166 (456)
..+.++|+|+.|+| ++++++.+.+... ..+... ...|++..| .++||+++++|++. +|.... +++|
T Consensus 27 ~~~~~~i~l~~g~p~~~~~~p~~~~~~~~~-~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~i 96 (398)
T PRK08363 27 KKGIKVIRLNIGDPVKFDFQPPEHMKEAYC-RAIKEG---HNYYGPSEG-----LPELREAIVKREKRKNGVDIT-PDDV 96 (398)
T ss_pred hcCCCeEEEeCCCCCcCCCCCCHHHHHHHH-HHHHcC---CCCCCCCCC-----cHHHHHHHHHHHHHhcCCCCC-hhhE
Confidence 45678999999999 5666665554322 122222 246888888 59999999999965 465564 5799
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeee-ccCc-------ccccc---CCCeEEEE
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKW-AGDA-------KRFNK---DGPYIELV 235 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~-~~d~-------~~l~~---~~~~~i~v 235 (456)
++|+|+++++.+++.+++++|| +|++++|+|+.+...++..|.+++.+ +.|. +.++. .+++++++
T Consensus 97 ~it~G~~~al~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l 172 (398)
T PRK08363 97 RVTAAVTEALQLIFGALLDPGD----EILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAV 172 (398)
T ss_pred EEeCCHHHHHHHHHHHhCCCCC----EEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEE
Confidence 9999999999999999999999 99999999999999999999988776 3333 23322 35789999
Q ss_pred cCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC----CCC--CCCCCcEEEecCccccCCCCceEEEEEE-
Q 012785 236 TSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT----SIT--YPADHDLMLFTVSKSTGHAGTRIGWALV- 300 (456)
Q Consensus 236 ~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~----~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~- 300 (456)
+|||||||.+++. +|+++++++|+||+|.+..+. ++. ...+++|+++||||.|++||+|+||+++
T Consensus 173 ~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~ 252 (398)
T PRK08363 173 INPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFV 252 (398)
T ss_pred ECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEe
Confidence 9999999999872 678899999999999853221 211 2235799999999999999999999998
Q ss_pred eCHHHHHHHHHHHhh---ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 301 KDMEVAKKMTKYIEL---NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~---~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
.++++++.+.+.... ..+++|.+.|.++..+|. +. ++++++.++.++++++.+.+.|++++++.+.
T Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~---~~--------~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 321 (398)
T PRK08363 253 DPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLT---GP--------MDYLEEYMKKLKERRDYIYKRLNEIPGISTT 321 (398)
T ss_pred CcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHh---CC--------hHHHHHHHHHHHHHHHHHHHHHhcCCCCEec
Confidence 226777766655321 246789999999999987 22 6789999999999999999999987667777
Q ss_pred CCCCcccccccccCCCCCceEEeecCc-----cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHH
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ-----EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRL 451 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L 451 (456)
.|.|++ |+|++++. +.+.+.++++++||.++||+.|+. +++++||+++.+++++++++++|
T Consensus 322 ~p~g~~-------------~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l 388 (398)
T PRK08363 322 KPQGAF-------------YIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRF 388 (398)
T ss_pred CCCeEE-------------EEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHH
Confidence 788888 89988753 344566778999999999999975 46899999977889999999999
Q ss_pred Hhhh
Q 012785 452 SKIL 455 (456)
Q Consensus 452 ~~~l 455 (456)
++++
T Consensus 389 ~~~~ 392 (398)
T PRK08363 389 EEFM 392 (398)
T ss_pred HHHH
Confidence 9875
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=350.98 Aligned_cols=323 Identities=16% Similarity=0.259 Sum_probs=261.8
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
+.++|+|+.|+|+++.++.+.+... ..+... ...|++..| .++||+++++++.. +|....++++|++|+|
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~G-----~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G 99 (386)
T PRK09082 29 EHGAINLSQGFPDFDGPPYLVEALA-YAMAAG---HNQYPPMTG-----VAALREAIAAKTARLYGRQYDADSEITVTAG 99 (386)
T ss_pred hCCEEEecCCCCCCCCCHHHHHHHH-HHHHcC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCC
Confidence 4578999999999876655543321 112222 246888888 59999999999865 4666544458999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NP 241 (456)
+++++.+++.+++.+|| +|++++|+|+.+...++..|.+++.++.|. +.++. .+++++++++||||
T Consensus 100 ~~~al~~~~~~~~~~gd----~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NP 175 (386)
T PRK09082 100 ATEALFAAILALVRPGD----EVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNP 175 (386)
T ss_pred HHHHHHHHHHHHcCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCC
Confidence 99999999999999999 999999999999999999999998877653 23322 35789999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
||.+++ ++|+++++++|+||+|.+..+ .++. ...+++|+++||||.+|+||+|+||++++ +++
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~-~~l 254 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP-AAL 254 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC-HHH
Confidence 999987 278999999999999975322 2221 23578999999999999999999999997 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+++......++++.+.|.++..++. .. ++++++.++.++++++.+.+.|++.+ +.+.++.|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~g~~-- 320 (386)
T PRK09082 255 SAEFRKVHQYNTFTVNTPAQLALADYLR---AE--------PEHYLELPAFYQAKRDRFRAALANSR-FKLLPCEGTY-- 320 (386)
T ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHh---CC--------hHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCeeE--
Confidence 9999998877788999999999998886 22 67888999999999999999999864 6677778887
Q ss_pred cccccCCCCCceEEeecCc----cHHHHHH-HHHhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ----EIEDCES-FLKGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~----~~~~~~~-~l~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++. +..++.+ +++++||.+.||+.|+. +.+++||+++.+++++++++++|+++
T Consensus 321 -----------~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~~ 386 (386)
T PRK09082 321 -----------FQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQL 386 (386)
T ss_pred -----------EEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhhC
Confidence 89999862 3445544 56899999999999952 46799999988899999999999863
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=351.17 Aligned_cols=325 Identities=20% Similarity=0.212 Sum_probs=245.6
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccC--ccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPG--WQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
.+.++|+|+.|+|++++++.+.+... ..+... ......|.+..| .++||+++|+++...+ + ++++|++|
T Consensus 31 ~~~~~i~l~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~Y~p~~g-----~~~lr~aia~~~~~~~--~-~~d~I~it 101 (402)
T TIGR03542 31 PSADIIRLGIGDTTQPLPASVIEAFH-NAVDELASEETFRGYGPEQG-----YPFLREAIAENDYRGR--I-DPEEIFIS 101 (402)
T ss_pred CCCCeEEcCCCCCCCCCCHHHHHHHH-HHHhcccccccccCCCCCCC-----CHHHHHHHHHHHHhcC--C-CHHHEEEC
Confidence 35689999999999877665444322 111111 012345877788 5999999999863322 3 46899999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCC-----------eEeeeccCcc-ccc-----cCCCeE
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKS-----------RLYKWAGDAK-RFN-----KDGPYI 232 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-----------~~~~~~~d~~-~l~-----~~~~~~ 232 (456)
+|+++++..++ .++.+|| +|++++|+|+.|...++..|+ +++.++.|.+ ++. ..++++
T Consensus 102 ~Ga~~al~~l~-~l~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 176 (402)
T TIGR03542 102 DGAKCDVFRLQ-SLFGSDN----TVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDI 176 (402)
T ss_pred CCcHHHHHHHH-HhcCCCC----EEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccccCCceE
Confidence 99999999875 5568899 999999999999999999999 8888877542 232 135789
Q ss_pred EEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEE
Q 012785 233 ELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
++++|||||||.+++. +|++++++||+||+|.+..+ .++. ...+++|+++||||.||+||+|+|
T Consensus 177 i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG 256 (402)
T TIGR03542 177 IYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLG 256 (402)
T ss_pred EEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceE
Confidence 9999999999999993 67889999999999985321 1221 123578999999999999999999
Q ss_pred EEEEeCHHHH--------HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012785 297 WALVKDMEVA--------KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV 368 (456)
Q Consensus 297 ~l~~~~~~~~--------~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L 368 (456)
|++++ ++++ +.+.........++|.+.|.++..++. ++. .+++.+.++.++++++.+.+.|
T Consensus 257 ~~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~---~~~-------~~~~~~~~~~~~~~~~~~~~~L 325 (402)
T TIGR03542 257 WTVVP-KELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYA---GEG-------LQPILEAISYYMENARILRKAL 325 (402)
T ss_pred EEEec-HHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHc---Ccc-------hhHHHHHHHHHHHHHHHHHHHH
Confidence 99997 7776 222222222344689999999888887 321 2456677889999999999999
Q ss_pred HhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHH-HHHhCCEEeecCCCCCC-CCCeEEEEecCChhHH
Q 012785 369 QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCES-FLKGNKILTRSGKHFGF-SPKYVRISMLDRDENY 444 (456)
Q Consensus 369 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~-~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i 444 (456)
++.+ +++..+.|++ |+|++++. +.+.+.+ +++++||.++||+.|+. +.+++||+++.+++++
T Consensus 326 ~~~~-~~~~~~~~~~-------------f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l 391 (402)
T TIGR03542 326 EAAG-FKVYGGEHAP-------------YLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENI 391 (402)
T ss_pred HhcC-ceecCCCcee-------------EEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHH
Confidence 8864 5555555665 99999975 3444444 55678999999999975 4689999987789999
Q ss_pred HHHHHHHHhhh
Q 012785 445 NLFVQRLSKIL 455 (456)
Q Consensus 445 ~~~l~~L~~~l 455 (456)
++++++|++.|
T Consensus 392 ~~~l~~l~~~~ 402 (402)
T TIGR03542 392 VEACERIKEAL 402 (402)
T ss_pred HHHHHHHHhhC
Confidence 99999999864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=358.50 Aligned_cols=399 Identities=14% Similarity=0.163 Sum_probs=280.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccCCCCchhhHHHHhh----hhhccccCCCceeecccccccccCCCCCCcc-c
Q 012785 6 PLFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRR----SVMAGCVLKEKEHVSERTHLSLSSSPSPSPS-S 80 (456)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~-~ 80 (456)
|.|-+|+.| ..++-.++. ...|+-|+-+|.|-.....||=- =|...|...+.. ++ ++ ++.+... .
T Consensus 10 s~fe~~~~~-~~~a~~~~~-~~~l~agrgnpn~~~~~~r~af~~~~~f~~~e~~~~~~~--~~----~~--~g~~~~~g~ 79 (527)
T PRK09275 10 SPFELKDEL-IKLAKSKSA-RLMLNAGRGNPNWLATTPREAFFRLGQFAVEESRRSWSY--PG----GL--GGMPQKEGI 79 (527)
T ss_pred CcHHHHHHH-HHHHhcccc-ceeecCCCCCcccccCCHHHHHHHHHHHHHHHHHHhhcc--CC----Cc--CCCcccccH
Confidence 578899988 666644332 34455788889997666554432 122233333322 21 11 1111111 2
Q ss_pred cccccchhhhcCC-------CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHH
Q 012785 81 SLTSTDIQSQDGG-------ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLH 153 (456)
Q Consensus 81 ~~~~~~~~~~~~~-------~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~ 153 (456)
..++...+....+ .++|+|+.|+|++++|+++.+. . ..+. + ..|+++.| .++||++|++++
T Consensus 80 ~~r~~~~~~~~~~~~g~~~l~~~i~l~~g~p~~~~~~~v~e~-~-~~~~-~----~~Y~~~~g-----~~~lreaia~~~ 147 (527)
T PRK09275 80 EERFEAFLEEHKDVPGIDFLRDAVSYVRDQLGFDADEFVYEL-V-DGII-G----DNYPVPDR-----MLKHTEKIVKDY 147 (527)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHhhcCCCCCCCCCHHHHHH-H-HHHh-c----CCCCCCCC-----CHHHHHHHHHHH
Confidence 2232222111111 2579999999999998887762 2 2222 2 14999999 499999999855
Q ss_pred -HHh-cCccCC--CceEEEccCHHHHHHHHHHH-----hcCCCCCCCcEEEEeCCCCCChhhhhhhcC--CeEeeecc--
Q 012785 154 -KVV-GNAITE--NHHIVVGTGSTQLFQAALYA-----LSSQDASEPISVVSAAPYYSSYPSITDCVK--SRLYKWAG-- 220 (456)
Q Consensus 154 -~~~-g~~~~~--~~~I~~t~G~~~al~~~~~~-----l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g--~~~~~~~~-- 220 (456)
.+. +....+ +++|++|+|+++++..++.+ ++++|| +|++++|+|+.|...++..| .+++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD----~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~ 223 (527)
T PRK09275 148 LRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGD----KIALMTPIFTPYLEIPELPRYDLEVVHINADE 223 (527)
T ss_pred HHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCC----EEEEeCCChHHHHHHHHHcCCCeEEEEeecCc
Confidence 432 222222 35899999999999999886 689999 99999999999999988875 45555443
Q ss_pred ------Ccccccc---CCCeEEEEcCCCCCCcccchH--------Hhh--hcCcEEEeeecCCCCC--CCCCC-CCCCCc
Q 012785 221 ------DAKRFNK---DGPYIELVTSPNNPDGSVRQS--------VVN--RSGGILVHDLAYYWPQ--YTSIT-YPADHD 278 (456)
Q Consensus 221 ------d~~~l~~---~~~~~i~v~~P~NPtG~~~~~--------l~~--~~~~~iI~De~y~~~~--~~~~~-~~~~~~ 278 (456)
|.+.++. .++++++++|||||||.++++ +|+ +++++||+||+|.+.. +.++. ..++++
T Consensus 224 ~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~ 303 (527)
T PRK09275 224 ENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNT 303 (527)
T ss_pred ccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCE
Confidence 2333332 367999999999999999993 574 3599999999998632 22222 245799
Q ss_pred EEEecCccccCCCCceEEEEEEeCHH----HHHHH--------------------------------HHHHhhccCcCCh
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDME----VAKKM--------------------------------TKYIELNTIGVSK 322 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~----~~~~l--------------------------------~~~~~~~~~~~s~ 322 (456)
|+++||||.||++|||+||+++++++ +++.+ ++.....+.+.|.
T Consensus 304 I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~ 383 (527)
T PRK09275 304 ILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLST 383 (527)
T ss_pred EEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999998432 22222 4566667899999
Q ss_pred HHHHHHH-----HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCce
Q 012785 323 DSQLRAA-----KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF 397 (456)
Q Consensus 323 ~~q~~a~-----~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f 397 (456)
+.|.+++ ++|+ .. +++++.+++.+++|++.+.+.|.. .+...+|.|+| |
T Consensus 384 p~Q~a~al~~~~all~---~~--------~~~~~~~~~~~~~Rr~~l~~~Lg~--~~~~~~p~g~f-------------Y 437 (527)
T PRK09275 384 PQQVQMALFSLFALLD---EE--------DAYKKAMKDIIRRRYKALYEGLGL--PEPEDPNNAAY-------------Y 437 (527)
T ss_pred HHHHHHHHHHHHHHHh---Cc--------hHHHHHHHHHHHHHHHHHHHHcCC--CCcCCCCCeeE-------------E
Confidence 9999732 3344 22 678999999999999999888832 13335688888 8
Q ss_pred EEeecCc-------------------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhhC
Q 012785 398 AWLKCEQ-------------------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKILS 456 (456)
Q Consensus 398 ~~~~~~~-------------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l~ 456 (456)
+|++++. +.+.+.++++++||.+.||+.||..++++|||++. +++++.++.++|+++++
T Consensus 438 ~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~ 516 (527)
T PRK09275 438 TLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLD 516 (527)
T ss_pred EEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 8887741 34557788899999999999998767899999985 88999999999998863
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=349.07 Aligned_cols=327 Identities=18% Similarity=0.269 Sum_probs=264.0
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
...+|+|+.|+|++++++.+.+... ..+... ...|.+..| .++||+++|++++. +|..+. +++|++|+|
T Consensus 32 ~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G 101 (391)
T PRK08361 32 MENVISLGIGEPDFDTPKNIKEAAK-RALDEG---WTHYTPNAG-----IPELREAIAEYYKKFYGVDVD-VDNVIVTAG 101 (391)
T ss_pred hcCeEEcCCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCC-cccEEEeCC
Confidence 3568999999999876655443321 112222 235777788 59999999999964 466554 579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEEcCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v~~P~N 240 (456)
+++++.+++.+++++|| +|++++|+|+.+...++..|.+++.++.|.+ .++. .+++++++++|||
T Consensus 102 ~~~al~~~~~~l~~~g~----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~N 177 (391)
T PRK08361 102 AYEATYLAFESLLEEGD----EVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNN 177 (391)
T ss_pred hHHHHHHHHHHhcCCCC----EEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCC
Confidence 99999999999999999 9999999999999999999999988776543 2322 2578999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
|||.+++. +|+++++++|+||+|.+..+ .++. ...+++++++||||.||++|+|+||++++ ++++
T Consensus 178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~-~~~~ 256 (391)
T PRK08361 178 PTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAP-EQVI 256 (391)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccC-HHHH
Confidence 99999982 68899999999999985322 1221 23478999999999999999999999997 8999
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+.+.+.......+++.+.|.++..+|+ ++. ..+++++.++.++++++.+.+.|+.++++.+..|+|++
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~------~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~--- 324 (391)
T PRK08361 257 KDMIKLHAYIIGNVASFVQIAGIEALR---SKE------SWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAF--- 324 (391)
T ss_pred HHHHHHHhhhccCCChHHHHHHHHHhc---CCc------ccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEE---
Confidence 998887766678899999999999887 331 23688999999999999999999987667788888888
Q ss_pred ccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 387 LGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+.+.+ +++||.+.||..|+. ++++|||+++.+++++++++++|+++++
T Consensus 325 ----------~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 325 ----------YVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALE 389 (391)
T ss_pred ----------EEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 89999863 345555555 578999999999974 4689999998888899999999998763
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=353.73 Aligned_cols=332 Identities=17% Similarity=0.293 Sum_probs=256.3
Q ss_pred hcCCCCeEEecCCCCCCCch---hHhhhcccccc----cccCccccccccCCCCcccCCCHHHHHHHHHHHHHh-cC--c
Q 012785 90 QDGGERIINVDHGDPTMYEK---YWQKVGDKTTI----VIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-GN--A 159 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~---~~~~~~~~~~~----~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-g~--~ 159 (456)
..++.++|+|+..++.+... +|+........ -........+|.+..| .++||+++|++++.+ |. +
T Consensus 43 ~~np~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G-----~~~LR~aiA~~l~~~~~~~~~ 117 (447)
T PLN02607 43 SHNPSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHG-----LKSFRQAMASFMEQIRGGKAR 117 (447)
T ss_pred ccCCCceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcc-----hHHHHHHHHHHHHHhcCCCCC
Confidence 35667899999999876433 23332211000 0001223467888999 599999999999753 42 3
Q ss_pred cCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh-hcCCeEeeeccCc--------ccccc---
Q 012785 160 ITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD-CVKSRLYKWAGDA--------KRFNK--- 227 (456)
Q Consensus 160 ~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~d~--------~~l~~--- 227 (456)
+ ++++|++|+|+++++++++.+++++|| .|++++|+|+.+...+. ..|+++++++.+. +.++.
T Consensus 118 v-~p~~Ivit~G~t~al~~l~~~l~~pGD----~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~ 192 (447)
T PLN02607 118 F-DPDRIVLTAGATAANELLTFILADPGD----ALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQ 192 (447)
T ss_pred c-CHHHeEEcCChHHHHHHHHHHhCCCCC----EEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 4 468999999999999999999999999 99999999999998777 4789888776542 23322
Q ss_pred ------CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCC-----CCCCCC---------CCCCCcE
Q 012785 228 ------DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWP-----QYTSIT---------YPADHDL 279 (456)
Q Consensus 228 ------~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~-----~~~~~~---------~~~~~~i 279 (456)
.++++++++|||||||.++++ +|+++++++|+||+|.+. .+.++. ...++++
T Consensus 193 ~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~ 272 (447)
T PLN02607 193 EAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVH 272 (447)
T ss_pred HHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEE
Confidence 257899999999999999983 788999999999999852 233321 1146899
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
+++||||.||++|+|+||+++.++++++.++.... ...+|.+.|.++..+|+ ++.. .+++++..++++++
T Consensus 273 vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~--~~~~s~~~q~~~~~~L~---d~~~-----~~~~l~~~r~~l~~ 342 (447)
T PLN02607 273 IVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSS--FTLVSSQTQHLLASMLS---DEEF-----TENYIRTNRERLRK 342 (447)
T ss_pred EEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhC---Cchh-----HHHHHHHHHHHHHH
Confidence 99999999999999999999865788777766543 23578999999999998 4321 25788899999999
Q ss_pred HHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-------c-HHHHH-HHHHhCCEEeecCCCCCC-C
Q 012785 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------E-IEDCE-SFLKGNKILTRSGKHFGF-S 429 (456)
Q Consensus 360 ~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~-~~~~~-~~l~~~gI~v~pg~~fg~-~ 429 (456)
+++.+.+.|++.+ +.+.++.||+ |+|++++. + ...+. ++++++||.+.||+.|+. .
T Consensus 343 ~~~~~~~~L~~~g-i~~~~~~ag~-------------fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~ 408 (447)
T PLN02607 343 RYEMIVQGLRRAG-IECLKGNAGL-------------FCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSE 408 (447)
T ss_pred HHHHHHHHHHhCC-CCcccCCeeE-------------EEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCC
Confidence 9999999999875 5677778888 99999853 1 22344 455678999999999974 5
Q ss_pred CCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
++|+||+|+. +++.++++++||++++
T Consensus 409 ~g~fRi~fa~~~~~~l~~gl~Ri~~~l 435 (447)
T PLN02607 409 PGWFRVCFANMSEDTLEVALKRIHRFM 435 (447)
T ss_pred CCEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 8999999996 8999999999999876
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=344.64 Aligned_cols=325 Identities=18% Similarity=0.240 Sum_probs=260.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
..+++|+.|+|++++++.+.++.. . ...... ...|++..| .+++|+++++++.. .|....++++|++|+|+
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~-~-~~~~~~-~~~Y~~~~G-----~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~ 98 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALN-N-FLANPE-NHKYQAVQG-----IPPLLEAITQKLQQDNGIELNNEQAIVVTAGS 98 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHH-H-HHhCCC-CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCh
Confidence 467999999999876655543321 1 111221 246888888 59999999999854 46655546789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---CCCeEEEEcCCCCCCc
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
++++..++.+++.+|| +|++++|+|..+...++..|++++.++.| .+.++. .+++++++++||||||
T Consensus 99 ~~~l~~~~~~~~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG 174 (389)
T PRK05957 99 NMAFMNAILAITDPGD----EIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTG 174 (389)
T ss_pred HHHHHHHHHHhcCCCC----EEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCC
Confidence 9999999999999999 99999999999999999999998876654 334433 3678999999999999
Q ss_pred ccchH--------HhhhcCcEEEeeecCCCCCCC-----CC---CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 244 SVRQS--------VVNRSGGILVHDLAYYWPQYT-----SI---TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 244 ~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~---~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
.+++. +|+++|+++|+||+|.+..+. +. ....+++|+++||||.||+||+|+||++++ +++++
T Consensus 175 ~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~~~~ 253 (389)
T PRK05957 175 VVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIP-IHLLE 253 (389)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecC-HHHHH
Confidence 99972 688999999999999853221 11 133458999999999999999999999997 99999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC-ccccCCCCccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL-FSVPELPSQFCTF 386 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~g~~~~~ 386 (456)
++.........+++.+.|.++..+|+ ++ ++++++.++.++++++.+.+.|+.++. +.+..+.|++
T Consensus 254 ~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~--- 319 (389)
T PRK05957 254 AIKKIQDTILICPPVVSQYAALGALQ---VG--------KSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAF--- 319 (389)
T ss_pred HHHHHHhhcccCCCcHHHHHHHHHHh---CC--------hHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeE---
Confidence 99998876677889999999999887 33 467888888999999999999998754 3667777887
Q ss_pred ccccCCCCCceEEeecCc--cHHHHHHH-HHhCCEEeecCCCCCC-CCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 387 LGRAFEPQPAFAWLKCEQ--EIEDCESF-LKGNKILTRSGKHFGF-SPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~--~~~~~~~~-l~~~gI~v~pg~~fg~-~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +..++.+. ++++||.++||+.|+. .++++||+++. +++++++++++|.+.+
T Consensus 320 ----------~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 320 ----------YCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGL 383 (389)
T ss_pred ----------EEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 89999853 34445554 5679999999999975 35799999975 8889999999998875
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=344.95 Aligned_cols=323 Identities=19% Similarity=0.273 Sum_probs=258.7
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
+..+++|+.|.|+++.++.+.+.... ... ....|++..| .++||+++++++...|.... +++|++|+|+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~a~~~--~~~---~~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~-~~~i~~t~G~ 97 (397)
T PRK07568 29 GIKVYHLNIGQPDIKTPEVFFEAIKN--YDE---EVLAYSHSQG-----IPELREAFAKYYKKWGIDVE-PDEILITNGG 97 (397)
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHH--Hhc---CCcCcCCCCC-----CHHHHHHHHHHHHHhCCCCC-cceEEEcCCh
Confidence 45789999999988766555433111 111 1345888888 59999999999987666654 5799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-cc--------ccc---CCCeEEEEcCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-KR--------FNK---DGPYIELVTSPNN 240 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~~--------l~~---~~~~~i~v~~P~N 240 (456)
++++.+++.+++++|| +|++++|+|+.+...++..|.+++.++.|. ++ ++. .+++++++++|||
T Consensus 98 ~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~N 173 (397)
T PRK07568 98 SEAILFAMMAICDPGD----EILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGN 173 (397)
T ss_pred HHHHHHHHHHhcCCCC----EEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCC
Confidence 9999999999999999 999999999999999999999998887642 22 221 3578999999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|||.+++ ++|+++++++|+||+|.+..+ .++. ...+++|+++||||.||+||+|+||+++++++
T Consensus 174 PtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~ 253 (397)
T PRK07568 174 PTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKE 253 (397)
T ss_pred CCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHH
Confidence 9999987 267889999999999985322 1222 12578999999999999999999999986678
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+++.+.+... ..+++|.+.|.++..+|+ .. ++++++.++.++++++.+.+.|++++++.+..|.|++
T Consensus 254 ~~~~~~~~~~-~~~~~s~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~- 320 (397)
T PRK07568 254 LIAAAMKLCQ-ARLSPPTLEQIGAAALLD---TP--------ESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAF- 320 (397)
T ss_pred HHHHHHHHhh-ccCCCCcHHHHHHHHHhh---CC--------HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcce-
Confidence 8888776543 357889999999999997 22 6789999999999999999999987667777788887
Q ss_pred ccccccCCCCCceEEeecCc-cHHHHHHHHHh------CCEEeecCCCCCC----CCCeEEEEecCChhHHHHHHHHHHh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKG------NKILTRSGKHFGF----SPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~------~gI~v~pg~~fg~----~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
|+|++++. +.+.+.+.+.+ +||.+.||..|+. +++++||+|+.+++++++++++|++
T Consensus 321 ------------~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~ 388 (397)
T PRK07568 321 ------------YIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKE 388 (397)
T ss_pred ------------EEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHH
Confidence 89999964 34455554433 6999999999942 3579999998788999999999998
Q ss_pred hh
Q 012785 454 IL 455 (456)
Q Consensus 454 ~l 455 (456)
++
T Consensus 389 ~l 390 (397)
T PRK07568 389 AL 390 (397)
T ss_pred HH
Confidence 76
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=350.01 Aligned_cols=327 Identities=16% Similarity=0.203 Sum_probs=249.3
Q ss_pred CCeEEecCCCCCCCch--hHhhhcccccccccC-c-cccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEE
Q 012785 94 ERIINVDHGDPTMYEK--YWQKVGDKTTIVIPG-W-QSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVV 168 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~--~~~~~~~~~~~~~~~-~-~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~ 168 (456)
.++|+|+.|+|+..++ ..+..... ..+... . .....|++..| .++||++||+|+.. +|..+. +++|++
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Y~~~~G-----~~~LR~aia~~~~~~~g~~v~-~~~I~i 102 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLA-DLLASGKLTEALGNYDGPQG-----KDELIEALAALLNERYGWNIS-PQNIAL 102 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHH-HHhcCcccccccccCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-hhhEEE
Confidence 5689999999985332 22222111 112111 1 22356999999 59999999999964 576664 679999
Q ss_pred ccCHHHHHHHHHHHhcC-----CCCCCCcEEEE-eCCCCCChhhhhhhcC------CeEee-------eccCccccc-cC
Q 012785 169 GTGSTQLFQAALYALSS-----QDASEPISVVS-AAPYYSSYPSITDCVK------SRLYK-------WAGDAKRFN-KD 228 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~-----~gd~~~~~Vlv-~~P~y~~~~~~~~~~g------~~~~~-------~~~d~~~l~-~~ 228 (456)
|+|+++++.+++++++. +|| .|++ ++|+|+.|...+...+ .+++. +.+|.+.++ ..
T Consensus 103 t~Ga~~al~~~~~~l~~~~~~~~gd----~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 178 (416)
T PRK09440 103 TNGSQSAFFYLFNLFAGRRADGSLK----KILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLHIDE 178 (416)
T ss_pred ccChHHHHHHHHHHHhccccCCCCC----eEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcccCC
Confidence 99999999999999985 577 8999 7999999988655333 22221 334556664 23
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCC----CCCC-CCCCCCcEEEecCccccCCCCceE
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQ----YTSI-TYPADHDLMLFTVSKSTGHAGTRI 295 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~----~~~~-~~~~~~~i~i~S~SK~~g~~G~Ri 295 (456)
++++++++|||||||.+++. +|++++++||+||+|..+. +... +...+++|+++||||. ++||+|+
T Consensus 179 ~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRi 257 (416)
T PRK09440 179 DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRC 257 (416)
T ss_pred CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCcceE
Confidence 56899999999999999993 6889999999999997521 1111 1125789999999996 8999999
Q ss_pred EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH-HHHHHHHHHHHHHHHHHhc-C-
Q 012785 296 GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF-TNHQMSTRWKQLRMAVQKS-G- 372 (456)
Q Consensus 296 G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~L~~~-~- 372 (456)
||++++ +++++++.........++|.+.|.++.++|+ ++. +.++..+ +++.++++++.+.+.|.+. +
T Consensus 258 G~~i~~-~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~---~~~------~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~ 327 (416)
T PRK09440 258 GIVIAD-EEIIEALSNMNGIISLAPGRLGPAIAAEMIE---SGD------LLRLSETVIRPFYRQKVQLAIALLRRYLPD 327 (416)
T ss_pred EEEeCC-HHHHHHHHHHHHHhccCCCcHHHHHHHHHhc---cch------HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999996 9999999998877778899999999999997 441 2455544 6888999999999999764 2
Q ss_pred -CccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCC--------CCeEEEEecCC
Q 012785 373 -LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFS--------PKYVRISMLDR 440 (456)
Q Consensus 373 -~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~--------~~~iRis~~~~ 440 (456)
.+.+..|+|++ |+|++++. +...+.+.++++||.++||+.|+.+ .+++||+++.+
T Consensus 328 ~~~~~~~p~gg~-------------fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~ 394 (416)
T PRK09440 328 EPCLIHKPEGAI-------------FLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQD 394 (416)
T ss_pred CCeEEecCCCce-------------EEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecCC
Confidence 24456777777 99999864 4566777888999999999999531 35999999878
Q ss_pred hhHHHHHHHHHHhhh
Q 012785 441 DENYNLFVQRLSKIL 455 (456)
Q Consensus 441 ~e~i~~~l~~L~~~l 455 (456)
++++++++++|++++
T Consensus 395 ~~~l~~~i~~l~~~~ 409 (416)
T PRK09440 395 DEEIEKGIAILAEEV 409 (416)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=355.65 Aligned_cols=332 Identities=17% Similarity=0.186 Sum_probs=255.9
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccC-ccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPG-WQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+++|+|+.+.+.|+.. .+..+ . ..+... ......|++..| .++||++||+|+.. .|.+.. +++|++|+
T Consensus 128 ~p~~i~~~~~~~~fp~~-~i~~a-~-~~l~~~~~~~~~~Y~~s~G-----~~~lReaIA~~~~~r~g~~~~-pe~I~iT~ 198 (534)
T PLN02231 128 HPSLLDKSETHGLFSAD-AIERA-W-QILDQIPGRATGAYSHSQG-----IKGLRDAIAAGIEARDGFPAD-PNDIFLTD 198 (534)
T ss_pred CCccCCCCCccccCCHH-HHHHH-H-HHHHhcCCccccCcCCCCC-----cHHHHHHHHHHHHhccCCCCC-cccEEEeC
Confidence 35789999888888863 33322 1 222221 122456999999 59999999999965 466665 57999999
Q ss_pred CHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---C------CCeE
Q 012785 171 GSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---D------GPYI 232 (456)
Q Consensus 171 G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~------~~~~ 232 (456)
|+++++.+++++|+. +|| .|+++.|+|+.|...++..|.+++.+++|.+ .++. . ++++
T Consensus 199 Ga~~ai~~~~~~l~~~~gd----~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ 274 (534)
T PLN02231 199 GASPAVHMMMQLLIRSEKD----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRA 274 (534)
T ss_pred CHHHHHHHHHHHhccCCCC----EEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEE
Confidence 999999999999984 799 9999999999999999999999998877643 2221 1 4688
Q ss_pred EEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC------CCCC------C---CCCcEEEecCcccc-
Q 012785 233 ELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------SITY------P---ADHDLMLFTVSKST- 288 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~~~------~---~~~~i~i~S~SK~~- 288 (456)
++++|||||||.++++ +|++++++||+||+|.+..|. ++.. . ..++|+++||||.+
T Consensus 275 ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~ 354 (534)
T PLN02231 275 LVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYY 354 (534)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccc
Confidence 9999999999999983 789999999999999864331 2111 1 12689999999976
Q ss_pred CCCCceEEEEEEe--CHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh---HHHHHHHHHHHHHHH
Q 012785 289 GHAGTRIGWALVK--DMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC---FFEFTNHQMSTRWKQ 363 (456)
Q Consensus 289 g~~G~RiG~l~~~--~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~ 363 (456)
|++|+|+||++++ ++++++.+.+... ...+.+.+.|.++..+++....+. ..+++ +.+.+++.+++|++.
T Consensus 355 g~pGlRiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~----~~y~~~~~~~~~i~~~~~~r~~~ 429 (534)
T PLN02231 355 GECGKRGGYMEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGD----ESYESYMAEKDGILSSLARRAKT 429 (534)
T ss_pred cCCccceEEEEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCc----chHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999873 4889999988765 456778889999888886211000 01233 344568899999999
Q ss_pred HHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec--Ccc------------H-HHHHHHHHhCCEEeecCCCCCC
Q 012785 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC--EQE------------I-EDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 364 l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~--~~~------------~-~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
+.+.|++++++.+.+|+|+| |+|+++ +.. . ..+.++++++||.++||+.|+.
T Consensus 430 l~~~L~~~~gi~~~~p~Ggf-------------ylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~ 496 (534)
T PLN02231 430 LEDALNSLEGVTCNKAEGAM-------------YLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQ 496 (534)
T ss_pred HHHHHhcCCCceecCCCeee-------------EEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCC
Confidence 99999998778999999999 999554 321 1 2245577789999999999985
Q ss_pred --CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 429 --SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 --~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+..+||+++..+++++++++++|++++
T Consensus 497 ~~g~~~~Rit~~~~~e~l~eal~RL~~~~ 525 (534)
T PLN02231 497 VPGTWHFRCTILPQEDKIPAIVSRLTEFH 525 (534)
T ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 455899999778999999999999875
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=341.71 Aligned_cols=325 Identities=18% Similarity=0.221 Sum_probs=259.5
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..+...|+|+.|+|+..++..+.+... ..+... ....|++..| .++||++++++++. .|.... +++|++|
T Consensus 26 ~~~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~Y~~~~G-----~~~lr~~ia~~~~~~~g~~~~-~~~i~~t 96 (386)
T PRK07550 26 GADGPLIDLSQAVPGYPPPPELLRALA-EAAADP--AAHLYGPVEG-----LPELREAYAAHYSRLYGAAIS-PEQVHIT 96 (386)
T ss_pred hcCCCeEEeCCCCCCCCCCHHHHHHHH-HHHhCc--CCcCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-cceEEEe
Confidence 345678999999998776554443322 111111 2346888888 59999999999965 465554 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-ccc-------cc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-KRF-------NK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~~l-------~~---~~~~~i~v~~P 238 (456)
+|+++++.+++.+++.+|| +|++++|+|+.+...++..|++++.+++|. +++ +. .+++++++++|
T Consensus 97 ~G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P 172 (386)
T PRK07550 97 SGCNQAFWAAMVTLAGAGD----EVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTP 172 (386)
T ss_pred cCcHHHHHHHHHHhcCCCC----EEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCC
Confidence 9999999999999999999 999999999999999999999999888763 232 21 25688888899
Q ss_pred CCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 239 NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 239 ~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||||.+++. +|++++++||+||+|.+..+ .++. ...+++++++||||.+|++|+|+||++++
T Consensus 173 ~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~- 251 (386)
T PRK07550 173 NNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVAS- 251 (386)
T ss_pred CCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecC-
Confidence 9999999882 78899999999999975321 1111 12467999999999999999999999997
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++.+.........++|.+.|.++..+|+. .++++++.++.++++++.+.+.|+.++.+.+ .+.|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~ 319 (386)
T PRK07550 252 PARIAEIEKFMDTVAICAPRIGQIAVAWGLPN-----------LADWRAGNRAEIARRRDAFRAVFARLPGWEL-LASGA 319 (386)
T ss_pred HHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCce
Confidence 89999999888777788899999999998872 2678889999999999999999998644443 34566
Q ss_pred ccccccccCCCCCceEEeecCc---cHHHHHH-HHHhCCEEeecCCCCCC-CCCeEEEEecC-ChhHHHHHHHHHHhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ---EIEDCES-FLKGNKILTRSGKHFGF-SPKYVRISMLD-RDENYNLFVQRLSKI 454 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~-~l~~~gI~v~pg~~fg~-~~~~iRis~~~-~~e~i~~~l~~L~~~ 454 (456)
+ |+|++++. +..++.. +++++||.++||..|+. .++++||+++. +++++++++++|+++
T Consensus 320 ~-------------~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 320 Y-------------FAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred E-------------EEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 6 89998853 3455555 45789999999999974 46899999986 788999999999876
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=341.85 Aligned_cols=323 Identities=16% Similarity=0.218 Sum_probs=258.5
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~ 172 (456)
..++||+.|.|+...++.+... ....+... ...|++..| .++||+++++++. .+|....++++|++|+|+
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~-~~~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~ 94 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEA-AQEAIAGG---VNQYPPGPG-----IPELRAAIAAQRRRRYGLEYDPDTEVLVTVGA 94 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHH-HHHHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCc
Confidence 4789999999987765443322 11222222 346988888 5999999999885 457666544479999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc---------ccccc---CCCeEEEEcCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA---------KRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~---------~~l~~---~~~~~i~v~~P~N 240 (456)
++++.+++.+++.+|| +|+++.|+|+.+...++..|.+++.++.|. +.++. .+++++++++|||
T Consensus 95 ~~al~~~~~~~~~~gd----~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~N 170 (387)
T PRK07777 95 TEAIAAAVLGLVEPGD----EVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHN 170 (387)
T ss_pred HHHHHHHHHHhcCCCC----EEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCC
Confidence 9999999999999999 999999999999999999999988766543 33332 3678999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|||.+++. +|+++++++|+||+|.+..+ .++. ...+++|+++||||.||+||+|+||++++ ++
T Consensus 171 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~-~~ 249 (387)
T PRK07777 171 PTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGP-AP 249 (387)
T ss_pred CCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecC-HH
Confidence 99999872 78899999999999975322 2222 23468999999999999999999999997 89
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+++.+.+......++.+.+.|.++..++. .+ +++++++++.++++++.+.+.|++.+ +.+..++|++
T Consensus 250 l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~g~~- 316 (387)
T PRK07777 250 LIAAVRAAKQYLTYVGGAPFQPAVAHALD---HE--------DAWVAALRDSLQAKRDRLAAGLAEAG-FEVHDSAGTY- 316 (387)
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHHHHHh---CC--------cHHHHHHHHHHHHHHHHHHHHHHhCC-CCccCCCcce-
Confidence 99999888776677888999999888886 33 57888999999999999999999874 6667777887
Q ss_pred ccccccCCCCCceEEeecCc----cHHHHHHHH-HhCCEEeecCCCCCC----CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQ----EIEDCESFL-KGNKILTRSGKHFGF----SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l-~~~gI~v~pg~~fg~----~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +...+.+.| +++||.|.||..|+. .+++|||+++.+++++++++++|+++.
T Consensus 317 ------------~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 317 ------------FLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALR 384 (387)
T ss_pred ------------EEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 89988641 345555555 578999999999963 256999999889999999999999864
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=342.29 Aligned_cols=327 Identities=18% Similarity=0.244 Sum_probs=249.0
Q ss_pred cCCCCeEEecCCCCC---CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcC-ccCCCceE
Q 012785 91 DGGERIINVDHGDPT---MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGN-AITENHHI 166 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~-~~~~~~~I 166 (456)
..++++|+|+.|+|+ +++++.+.+... ..+ . ....|+++.| .++||+++|+++...+. .. ++++|
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~-~~~-~---~~~~Y~~~~G-----~~~lr~~ia~~~~~~~~~~~-~~~~i 98 (404)
T PRK09265 30 EEGHKILKLNIGNPAPFGFEAPDEILRDVI-RNL-P---TAQGYSDSKG-----LFSARKAIMQYYQQKGIPDV-DVDDI 98 (404)
T ss_pred HcCCCeEEecCCCCCcCCCCCCHHHHHHHH-HHh-h---cCCCCCCCCC-----cHHHHHHHHHHHhccCCCCC-CcccE
Confidence 456789999999984 444443333211 111 1 1346999999 59999999999976555 34 46799
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEEEE
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIELV 235 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i~v 235 (456)
++|+|+++++.+++.+++++|| +|++++|+|+.+...++..|.+++.++.| .+.++. .+++++++
T Consensus 99 ~~t~G~~~~l~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l 174 (404)
T PRK09265 99 YIGNGVSELIVMAMQALLNNGD----EVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVI 174 (404)
T ss_pred EEeCChHHHHHHHHHHhCCCCC----EEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEE
Confidence 9999999999999999999999 99999999999999999999988876544 233332 36789999
Q ss_pred cCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCC--CCCCcEEEecCccccCCCCceEEEEEE
Q 012785 236 TSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITY--PADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 236 ~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~--~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
+|||||||.+++. +|+++|++||+||+|.+..+ .++.. ...++|+++||||.||+||+|+||+++
T Consensus 175 ~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~ 254 (404)
T PRK09265 175 INPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVL 254 (404)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEE
Confidence 9999999999882 67889999999999986332 22221 223689999999999999999999997
Q ss_pred e-CHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012785 301 K-DME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 301 ~-~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
+ +++ +++.+... .....++|.++|.++.++|. +.. ..+++++ .++.++++++.+.+.|++++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~---~~~-----~~~~~~~-~~~~~~~~r~~~~~~L~~~~~~~ 324 (404)
T PRK09265 255 SGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALG---GYQ-----SINELIL-PGGRLYEQRDRAWELLNAIPGVS 324 (404)
T ss_pred eCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhc---Cch-----hHHHHHH-HHHHHHHHHHHHHHHHhcCCCCc
Confidence 4 244 33434332 23457889999999999886 210 0122222 23567788999999998876677
Q ss_pred ccCCCCcccccccccCCCCCceEEeecCc-------cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHH
Q 012785 376 VPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLF 447 (456)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~ 447 (456)
+..|.|++ |+|++++. +.+.+.++++++||.+.||+.|+. .++++|++++.++|+++++
T Consensus 325 ~~~p~~g~-------------~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~ 391 (404)
T PRK09265 325 CVKPKGAL-------------YAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEA 391 (404)
T ss_pred ccCCCcce-------------EEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHH
Confidence 78888888 99998863 345688899999999999999963 5789999997789999999
Q ss_pred HHHHHhhh
Q 012785 448 VQRLSKIL 455 (456)
Q Consensus 448 l~~L~~~l 455 (456)
+++|++++
T Consensus 392 l~rl~~~l 399 (404)
T PRK09265 392 IGRIGRFL 399 (404)
T ss_pred HHHHHHHH
Confidence 99999876
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=340.89 Aligned_cols=308 Identities=17% Similarity=0.211 Sum_probs=244.7
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.+.++|+|+.|+|++.+++.+.+.... .+ .. ...|++ .| .++||++||++++. ++++|++|+|
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~-~~-~~---~~~Y~~-~~-----~~~lr~~ia~~~~~------~~~~I~it~G 90 (357)
T PRK14809 28 DPDDLVKLSSNENPHGPSPAAVEAIRE-AA-ER---VHSYPK-AS-----HADLTAALADRWDV------SPEQVWLANG 90 (357)
T ss_pred CccceeEecCCCCCCCCCHHHHHHHHH-HH-hh---hhcCCC-CC-----HHHHHHHHHHHhCC------CcceEEECCC
Confidence 456799999999998877655543211 11 12 346876 56 59999999999853 4689999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-ccc-------cc--CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-KRF-------NK--DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~~l-------~~--~~~~~i~v~~P~NP 241 (456)
+++++++++++++++|| +|++++|+|+.+...++..|.+++.++++. +++ .. .++++++++|||||
T Consensus 91 ~~~al~~~~~~~~~~gd----~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~i~l~~p~NP 166 (357)
T PRK14809 91 GDGALDYLARAMLDPGD----TVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYDGERIVYLTSPHNP 166 (357)
T ss_pred HHHHHHHHHHHhcCCCC----EEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhcCCcEEEEeCCCCC
Confidence 99999999999999999 999999999999998898999888766543 222 21 25789999999999
Q ss_pred CcccchH-----Hhhh--cCcEEEeeecCCCCCCCC--C--CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHH
Q 012785 242 DGSVRQS-----VVNR--SGGILVHDLAYYWPQYTS--I--TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT 310 (456)
Q Consensus 242 tG~~~~~-----l~~~--~~~~iI~De~y~~~~~~~--~--~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~ 310 (456)
||.+++. +++. .+++||+||+|.+..+.+ + ....+++++++||||.||+||+|+||++++ +++++++.
T Consensus 167 TG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~-~~~~~~~~ 245 (357)
T PRK14809 167 TGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVP-EEWADAYA 245 (357)
T ss_pred CCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecC-HHHHHHHH
Confidence 9999983 4443 378999999998643321 1 123578999999999999999999999997 88999988
Q ss_pred HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccccc
Q 012785 311 KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 311 ~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~ 390 (456)
+.. ..++++.++|.++..+|. + ++++++.++.++++++.+.+.|+... .+.+++
T Consensus 246 ~~~--~~~~~~~~~~~~a~~~l~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~~-----~~~~g~------- 299 (357)
T PRK14809 246 RVN--TPFAASELACRAGLAALD---D---------DEHVERTVETARWAREYIREELDAPT-----WESAGN------- 299 (357)
T ss_pred HhC--CCCCCCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHhcCcc-----CCCCCC-------
Confidence 765 367889999999998886 2 57888999999999999999886521 133444
Q ss_pred CCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 391 FEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++ +.+.+.+.++++||.|+||+.|+. +++|||+++ +++++++++++|+++++
T Consensus 300 ------f~~~~~~-~~~~~~~~l~~~gv~v~~g~~f~~-~~~iRls~~-~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 300 ------FVLAEVG-DASAVAEAAQERGVIVRDCTSFGL-PECIRITCG-TREETERAVEVLNEVLA 356 (357)
T ss_pred ------EEEEECC-CHHHHHHHHHHCCEEEEECccCCC-CCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence 8999986 445666778899999999999975 689999985 57899999999999874
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=340.20 Aligned_cols=310 Identities=18% Similarity=0.222 Sum_probs=245.5
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
.+++||+.|+|...+|+.+.+.... .+ .....|+++ | .++||+++|+|++. ++++|++|+|++
T Consensus 19 ~~~~~l~~~~~~~~~p~~~~~a~~~-~~----~~~~~Y~~~-~-----~~~lr~~ia~~~~~------~~~~i~it~Ga~ 81 (354)
T PRK06358 19 NMILDFSANINPLGVPESLKQAITE-NL----DKLVEYPDP-D-----YLELRKRIASFEQL------DLENVILGNGAT 81 (354)
T ss_pred cceEEecCCCCCCCCCHHHHHHHHH-HH----HhhhcCCCc-c-----HHHHHHHHHHHhCC------ChhhEEECCCHH
Confidence 3579999998877656544433221 11 123468775 4 48999999999853 568999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-c--c-----c--cCCCeEEEEcCCCCCCc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-R--F-----N--KDGPYIELVTSPNNPDG 243 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~--l-----~--~~~~~~i~v~~P~NPtG 243 (456)
+++.++++++ .+ + +|++++|+|+.|...++..|.+++.++.|.+ + + + ..++++++++|||||||
T Consensus 82 ~~l~~~~~~~-~~-~----~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~P~NPtG 155 (354)
T PRK06358 82 ELIFNIVKVT-KP-K----KVLILAPTFAEYERALKAFDAEIEYAELTEETNFAANEIVLEEIKEEIDLVFLCNPNNPTG 155 (354)
T ss_pred HHHHHHHHHh-CC-C----cEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCccHHHHHhhccCCCEEEEeCCCCCCC
Confidence 9999999986 34 5 7999999999999999999999988876532 1 1 1 12578888999999999
Q ss_pred ccchH--------HhhhcCcEEEeeecCCCCCCC----C-C--CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 244 SVRQS--------VVNRSGGILVHDLAYYWPQYT----S-I--TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 244 ~~~~~--------l~~~~~~~iI~De~y~~~~~~----~-~--~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
.+++. +|+++++++|+||+|.+..+. + + ....+++|+++||||.||+||+|+||++++++.+++.
T Consensus 156 ~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~ 235 (354)
T PRK06358 156 QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEK 235 (354)
T ss_pred CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHH
Confidence 99983 678899999999999853222 1 1 1234789999999999999999999999865788888
Q ss_pred HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 309 l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
+.+... .++++.++|.++..+|+ + .+++++.++.++++++.+.+.|++.+++.+..+.
T Consensus 236 ~~~~~~--~~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-------- 293 (354)
T PRK06358 236 LLQMRE--PWSINTFADLAGQTLLD---D---------KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPS-------- 293 (354)
T ss_pred HHHhCC--CCcchHHHHHHHHHHhc---c---------HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCc--------
Confidence 888764 67889999999999986 2 4678889999999999999999887545544443
Q ss_pred ccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 389 RAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++|+|++++.. ..+.+.|.++||.++||+.|+. +++++||++ .++++++++++.|+++++
T Consensus 294 ------g~f~~~~~~~~-~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~-~~~~~~~~l~~~l~~~~~ 354 (354)
T PRK06358 294 ------VNFIFFKLEKP-IDLRKELLKKGILIRSCSNYRGLDENYYRVAV-KSREDNKKLLKALEVILS 354 (354)
T ss_pred ------ceEEEEEcCch-HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHHhC
Confidence 34799999754 5677777789999999999954 568999998 677889999999998864
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=345.46 Aligned_cols=305 Identities=18% Similarity=0.232 Sum_probs=243.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++++|+|+.|+|++++++.+.+.... .+. ...+|++ .| .++||++||+|++. ++++|++|+|
T Consensus 27 ~~~~~i~l~~nen~~~~~~~v~~a~~~-~~~----~~~~Yp~-~g-----~~~Lr~aia~~~~~------~~~~I~vt~G 89 (366)
T PRK01533 27 GDHSFVKLASNENPFGCSPRVLDELQK-SWL----DHALYPD-GG-----ATTLRQTIANKLHV------KMEQVLCGSG 89 (366)
T ss_pred CCCceEEeCCCCCCCCCCHHHHHHHHH-HHH----hcCcCCC-CC-----HHHHHHHHHHHhCC------CcceEEECCC
Confidence 345789999999999888766653221 111 1235765 56 58999999999864 5689999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----cccccc---CCCeEEEEcCCCCCCc
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
+++++.+++++++++|| +|++++|+|+.|...++..|.+++.++.| .+.++. .++++++++|||||||
T Consensus 90 s~e~i~~~~~~l~~~gd----~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG 165 (366)
T PRK01533 90 LDEVIQIISRAVLKAGD----NIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTG 165 (366)
T ss_pred HHHHHHHHHHHhcCCCC----EEEEcCCcHHHHHHHHHHcCCEEEEeecCCCCcCHHHHHHHhCcCCcEEEEeCCCCCCC
Confidence 99999999999999999 99999999999999999999999887764 334432 3678999999999999
Q ss_pred ccchH-----H---hhhcCcEEEeeecCCCCCC-----CCC--CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 244 SVRQS-----V---VNRSGGILVHDLAYYWPQY-----TSI--TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 244 ~~~~~-----l---~~~~~~~iI~De~y~~~~~-----~~~--~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
.+++. + |++++ ++|+||+|.+..+ ..+ ....+++|+++||||.||+||+|+||++++ ++++++
T Consensus 166 ~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~-~~~~~~ 243 (366)
T PRK01533 166 TYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH-EELIEK 243 (366)
T ss_pred CCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC-HHHHHH
Confidence 99983 3 44454 6778999975211 111 134578999999999999999999999996 999999
Q ss_pred HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 309 l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
+.+.+ ..+++|.++|.++.++|+ + .++++..++.++++++.+.+.++.++ +.+
T Consensus 244 l~~~~--~~~~~~~~~q~aa~~~l~---~---------~~~~~~~~~~~~~~r~~~~~~l~~~g-~~~------------ 296 (366)
T PRK01533 244 LNVVR--LPFNVSSLAQKAATIAFG---D---------DEFIEEIVRVNTEGLRQYESFCKENE-IPF------------ 296 (366)
T ss_pred HHHhc--CCCCcCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHhCC-Ccc------------
Confidence 98876 368999999999999997 2 46788888889999999999888764 332
Q ss_pred ccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 389 RAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++++++|+|++++ +...+.+.|.++||.|++ | ++++||++ .+.++++.+++.|+++++
T Consensus 297 --~~~~~nf~~~~~~-~~~~~~~~l~~~GI~Vr~---~---~~~iRis~-~~~~~~~~l~~al~~~~~ 354 (366)
T PRK01533 297 --YQSQTNFIFLPVE-NGGEIYEACAHAGFIIRP---F---PNGVRITV-GTREQNEGVISVLQQHFE 354 (366)
T ss_pred --CCCcCcEEEEeCC-CHHHHHHHHHHCCcEEcc---C---CCceEEeC-CCHHHHHHHHHHHHHHHH
Confidence 3456669999986 456678888899999998 4 57899998 677899999999998763
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=340.39 Aligned_cols=308 Identities=15% Similarity=0.181 Sum_probs=236.1
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
.++|+|+.+++++.+++.+.+... ..+ . ....|+++.+ ++||++||+|++. ++++|++|+|++
T Consensus 22 ~~~i~l~~~~n~~~~~~~~~~a~~-~~~-~---~~~~Y~~~~~------~~Lr~aia~~~~v------~~~~I~it~G~~ 84 (360)
T PRK07392 22 DAILDFSASINPLGPPESVIAAIQ-SAL-S---ALRHYPDPDY------RELRLALAQHHQL------PPEWILPGNGAA 84 (360)
T ss_pred ccEEEeCCcCCCCCCCHHHHHHHH-HHH-H---HhhcCCCcCH------HHHHHHHHHHhCc------ChhhEEECCCHH
Confidence 468999999888877765554321 111 1 1346887653 8999999999943 467999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc--------cc---c--CCCeEEEEcCCCC
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR--------FN---K--DGPYIELVTSPNN 240 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~--------l~---~--~~~~~i~v~~P~N 240 (456)
++|.++++++. +|| +|++++|+|+.|...++..|++++.+++|.++ ++ . .++++++++||||
T Consensus 85 ~~i~~~~~~l~-~g~----~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~N 159 (360)
T PRK07392 85 ELLTWAGRELA-QLR----AVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLLLNNPHN 159 (360)
T ss_pred HHHHHHHHHhC-CCC----eEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhccCCCEEEEeCCCC
Confidence 99999999875 677 99999999999999999999999988876432 11 1 2568999999999
Q ss_pred CCcccchH-----HhhhcCcEEEeeecCCCCCCC----CC---CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 241 PDGSVRQS-----VVNRSGGILVHDLAYYWPQYT----SI---TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 241 PtG~~~~~-----l~~~~~~~iI~De~y~~~~~~----~~---~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
|||.++++ +++++++ +|+||+|.+..+. +. ....+++|+++||||.||+||+|+||++++ ++++++
T Consensus 160 PTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~-~~~~~~ 237 (360)
T PRK07392 160 PTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAH-PDRLQR 237 (360)
T ss_pred CCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCC-HHHHHH
Confidence 99999994 7788885 6669999864221 11 133468999999999999999999999997 888888
Q ss_pred HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 309 l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
+.+.. ..+++|.++|.++.++|+ + .++.+..++.++++|+.+.+.|+.++++.+. +.+++
T Consensus 238 ~~~~~--~~~~~s~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~----- 297 (360)
T PRK07392 238 WQQWR--DPWPVNGLAAAAAIAALA---D---------RDFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAAN----- 297 (360)
T ss_pred HHhhC--CCCCCCHHHHHHHHHHhc---c---------HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCC-----
Confidence 87665 357899999999999987 2 3566777788999999999999887555443 24444
Q ss_pred ccCCCCCceEEeecCccHHHHHH-HHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 389 RAFEPQPAFAWLKCEQEIEDCES-FLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~~~~~~~~-~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++.+..++.+ +++++||.++||..|+. +++++||+++. +++.+++.+.|+++
T Consensus 298 --------fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~l~~al~~~ 356 (360)
T PRK07392 298 --------FLLVQSQGSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT-EAENQRLLEALAAI 356 (360)
T ss_pred --------EEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHH
Confidence 999998755555554 46789999999999974 56899999965 33334444444444
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=336.18 Aligned_cols=312 Identities=21% Similarity=0.297 Sum_probs=256.4
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
++++|+.+++++++++++.... .........||++. ..+|+++++++++. .++++|++++|+++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~-----~~~~~~~~rYPd~~------~~~l~~a~a~~~~~-----~~~~~V~~gnGsde 86 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAI-----RAALDKLNRYPDPD------YRELRAALAEYYGV-----VDPENVLVGNGSDE 86 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHH-----HHHHHhhccCCCCc------HHHHHHHHHHHhCC-----CCcceEEEcCChHH
Confidence 6899999998888776665432 11111245799986 49999999999973 15689999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----cccccc---CCCeEEEEcCCCCCCcccc
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFNK---DGPYIELVTSPNNPDGSVR 246 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~---~~~~~i~v~~P~NPtG~~~ 246 (456)
+|..++++++.+|| +|+++.|+|..|...++..|++++.++.+ .+.+.. .++++++++|||||||..+
T Consensus 87 ~i~~l~~~~~~~gd----~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~ 162 (356)
T COG0079 87 LIELLVRAFVEPGD----TVLIPEPTFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLL 162 (356)
T ss_pred HHHHHHHHhhcCCC----EEEEcCCChHHHHHHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCC
Confidence 99999999999999 99999999999999999999999877654 344432 2689999999999999999
Q ss_pred hH-----Hhhh--cCcEEEeeecCCCCCCCC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc
Q 012785 247 QS-----VVNR--SGGILVHDLAYYWPQYTS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN 316 (456)
Q Consensus 247 ~~-----l~~~--~~~~iI~De~y~~~~~~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~ 316 (456)
+. +++. .+.++|+||+|.+....+ +...++|+++++||||.||++|+|+||++++ +++++.+.+.+.
T Consensus 163 ~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~-~~~i~~l~~vr~-- 239 (356)
T COG0079 163 PREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIAN-PELIAALNKVRP-- 239 (356)
T ss_pred CHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCC-HHHHHHHHHhcC--
Confidence 84 4432 288999999999743322 1135678999999999999999999999985 999999999986
Q ss_pred cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc
Q 012785 317 TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA 396 (456)
Q Consensus 317 ~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 396 (456)
.+++|.++|.++.++|+. ++++++.++.+++.|+++.+.|+.++ +. .++++++|
T Consensus 240 p~~v~~~a~~aa~aal~~------------~~~~~~~~~~~~~~r~rl~~~l~~~~-~~-------------~v~pS~aN 293 (356)
T COG0079 240 PFNVSSPALAAAIAALRD------------ADYLEESVERIREERERLYAALKALG-LF-------------GVFPSQAN 293 (356)
T ss_pred CCCCCHHHHHHHHHHccc------------HHHHHHHHHHHHHHHHHHHHHHHhCC-CC-------------eecCCCCc
Confidence 899999999999999982 58999999999999999999999876 22 24567788
Q ss_pred eEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 397 FAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 397 f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|++++++. ....+.+.|.++||.||.....+..++++||++ .++|+.+.++++|+++++
T Consensus 294 Fvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitv-gt~een~~ll~AL~~~~~ 353 (356)
T COG0079 294 FVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITV-GTPEENDRLLAALREVLK 353 (356)
T ss_pred EEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEe-CCHHHHHHHHHHHHHHHh
Confidence 99999963 244788999999999999865444678999999 677777999999998763
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=339.39 Aligned_cols=326 Identities=18% Similarity=0.262 Sum_probs=253.5
Q ss_pred CCCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceE
Q 012785 92 GGERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I 166 (456)
++.++|+|+.|+|. +++++.+.+... ..+.... ...|++..| .++||++++++++. .+.... +++|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~-~~l~~~~--~~~Y~~~~g-----~~~lr~~ia~~l~~~~~~~~~-~~~i 99 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVK-DALRSGK--FNGYAPSVG-----ALAAREAVAEYLSSDLPGKLT-ADDV 99 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHH-HHHhcCC--CCCCCCCCC-----CHHHHHHHHHHHHhhcCCCCC-HHHE
Confidence 46789999999985 455554443221 1222222 236877888 59999999999975 355554 5799
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc---CCCeEEEE
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK---DGPYIELV 235 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~---~~~~~i~v 235 (456)
++|+|+++++.+++.++..+|| +|++++|+|+.+...++..|.+++.++. |.+.++. .+++++++
T Consensus 100 i~t~G~t~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i 175 (403)
T TIGR01265 100 VLTSGCSQAIEICIEALANPGA----NILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVV 175 (403)
T ss_pred EEecChHHHHHHHHHHhCCCCC----EEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEE
Confidence 9999999999999999999999 9999999999999999999998876654 3333332 35788999
Q ss_pred cCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCCC--CCCCcEEEecCccccCCCCceEEEEEE
Q 012785 236 TSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SITY--PADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 236 ~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~~--~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
++||||||.+++. +|+++|+++|+||+|.+..+. ++.. ...++|+++||||.|++||+|+||+++
T Consensus 176 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~ 255 (403)
T TIGR01265 176 INPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIII 255 (403)
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEE
Confidence 9999999999872 688999999999999864322 2221 234799999999999999999999998
Q ss_pred eCH-H-----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 301 KDM-E-----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 301 ~~~-~-----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
+++ . +.+.+..... ...+++.+.|.++..+|.. . .+.++++.++.++++++.+.+.|+.++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~---~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (403)
T TIGR01265 256 HDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILEN---T-------PQEFFDGKISVLKSNAELCYEELKDIPGL 324 (403)
T ss_pred eCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHh---C-------hHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 532 2 3444444432 3567899999999999972 2 26789999999999999999999987556
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc-------cHHHH-HHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------EIEDC-ESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNL 446 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~~~~~-~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~ 446 (456)
.+..|.|++ |+|++++. +..++ ..+++++||.+.||+.|+. ++++||+++.+++++++
T Consensus 325 ~~~~p~~g~-------------f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-~~~iRis~~~~~~~l~~ 390 (403)
T TIGR01265 325 VCPKPEGAM-------------YLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGL-PNWVRITITVPESMLEE 390 (403)
T ss_pred eecCCCcee-------------EEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCC-CCeEEEEecCCHHHHHH
Confidence 666677777 99999852 23444 4456789999999999974 78999999888889999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 391 ~l~~l~~~~ 399 (403)
T TIGR01265 391 ACSRIKEFC 399 (403)
T ss_pred HHHHHHHHH
Confidence 999999876
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=333.81 Aligned_cols=295 Identities=17% Similarity=0.226 Sum_probs=230.9
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
.+|+|+.+++++... .....|+++. ..+||+++|++++. ++++|++|+|+++
T Consensus 17 ~~i~l~~Nenp~~~~----------------~~~~~Yp~~~------~~~lr~~ia~~~~~------~~~~I~it~Gs~~ 68 (332)
T PRK06425 17 RIIDFSANINDFMDI----------------GDISIYPEIS------YTDIEDQIKIYTQG------LKIKVLIGPGLTH 68 (332)
T ss_pred CEEEeccccCCCcCh----------------hhcccCcCcC------HHHHHHHHHHHhCC------CcceEEECCCHHH
Confidence 679999998776311 1134688876 49999999999986 5789999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-----cccccCCCeEEEEcCCCCCCcccchH-
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-----KRFNKDGPYIELVTSPNNPDGSVRQS- 248 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-----~~l~~~~~~~i~v~~P~NPtG~~~~~- 248 (456)
+|.+++. ++.++ .|++++|+|+.|...++..|++++.++.|. +.++..++++++++|||||||.+++.
T Consensus 69 ~l~~~~~-~~~~~-----~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s~~ 142 (332)
T PRK06425 69 FIYRLLS-YINVG-----NIIIVEPNFNEYKGYAFTHGIRISALPFNLINNNPEILNNYNFDLIFIVSPDNPLGNLISRD 142 (332)
T ss_pred HHHHHHH-HhCCC-----cEEEeCCChHHHHHHHHHcCCeEEEEeCCcccCcHHHHhhcCCCEEEEeCCCCCcCCccCHH
Confidence 9999997 45665 577889999999999999999999887753 22333477899999999999999993
Q ss_pred -------HhhhcCcEEEeeecCCCCCCC---CC---CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh
Q 012785 249 -------VVNRSGGILVHDLAYYWPQYT---SI---TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL 315 (456)
Q Consensus 249 -------l~~~~~~~iI~De~y~~~~~~---~~---~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~ 315 (456)
+|++++++||+||+|.+..+. +. ....+++|+++||||++|+||+|+||++++ +++++.+.+...
T Consensus 143 ~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~-~~li~~l~~~~~- 220 (332)
T PRK06425 143 SLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATD-DYNMKISRKITE- 220 (332)
T ss_pred HHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecC-HHHHHHHHHcCC-
Confidence 577899999999999864332 11 123468999999999999999999999997 899998887643
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCC
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQP 395 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~ 395 (456)
.+.++.+.+ +++.. + ..++++++.++.++++|+.+.+.|++.+ +.+..+ +.+
T Consensus 221 -~~~~~~~~~----~~l~~---~------~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~-------------~~g 272 (332)
T PRK06425 221 -PWSVCDPAI----DFIRS---I------DLDYVAKHSLDIMENERSYLINNLEAMG-FRAAGD-------------PSA 272 (332)
T ss_pred -CCccCHHHH----HHHHH---h------hhHHHHHHHHHHHHHHHHHHHHHHHHCC-CEECCC-------------CCc
Confidence 344444433 33331 1 1256778899999999999999999874 443322 233
Q ss_pred ceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 396 AFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 396 ~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+|+|++++ +.+.+.+.|.++||.++||+.|+. +++++||++ .++++++.+++.|++++
T Consensus 273 ~f~~~~~~-~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~-~~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 273 NFITFMIP-DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAI-RRRSFNIKLVNALRNFL 331 (332)
T ss_pred eEEEEEcC-CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHHh
Confidence 48999987 566677778889999999999953 468999999 56789999999999876
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=336.58 Aligned_cols=325 Identities=21% Similarity=0.280 Sum_probs=263.4
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+..+++|+.|+|++++++.+.+... ..+... ...|++..| .++||++|+++++. +|.... +++|++|+
T Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~---~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~ 98 (393)
T PRK05764 29 QGRDVISLGAGEPDFDTPEHIKEAAI-EALDDG---KTKYTPAAG-----IPELREAIAAKLKRDNGLDYD-PSQVIVTT 98 (393)
T ss_pred ccCCEEEeCCCCCCCCCCHHHHHHHH-HHHhcC---CCCcCCCCC-----hHHHHHHHHHHHHHHhCCCCC-HHHEEEeC
Confidence 35678999999999887665544321 122222 235888888 59999999999954 455454 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P~ 239 (456)
|+++++..++.+++++|| +|++++|+|..+...++..|.+++.++.|. +.++. .+++++++++||
T Consensus 99 g~~~a~~~~~~~~~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 174 (393)
T PRK05764 99 GAKQALYNAFMALLDPGD----EVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPS 174 (393)
T ss_pred CcHHHHHHHHHHhcCCCC----EEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCC
Confidence 999999999999999999 999999999999999999999998877653 23322 357899999999
Q ss_pred CCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCC----CCCCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 240 NPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSI----TYPADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 240 NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~----~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||||.+++ ++|+++++++|+||+|.+..+ .++ ....+++++++||||.+|++|+|+||++++
T Consensus 175 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~- 253 (393)
T PRK05764 175 NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGP- 253 (393)
T ss_pred CCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecC-
Confidence 99999987 268899999999999985322 122 133468999999999999999999999986
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++++.........+++++.|.++.++|+ +. ++++++.++.++++++.+.+.|++++++.+..|.|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~ 322 (393)
T PRK05764 254 KELIKAMSKLQSHSTSNPTSIAQYAAVAALN---GP--------QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGA 322 (393)
T ss_pred HHHHHHHHHHHhhcccCCChHHHHHHHHHHc---CC--------hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcc
Confidence 9999999888776778899999999999886 22 578889999999999999999998856777778888
Q ss_pred ccccccccCCCCCceEEeecCcc-------HHHH-HHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQE-------IEDC-ESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~~-------~~~~-~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
+ |+|++++.. ..++ ..+++++||.++||..|+. ++++||+++.+++++++++++|+++
T Consensus 323 ~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~vRis~~~~~~~~~~~i~~l~~~ 388 (393)
T PRK05764 323 F-------------YVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA-PGYVRLSYATSLEDLEEGLERIERF 388 (393)
T ss_pred e-------------EEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC-CCEEEEEecCCHHHHHHHHHHHHHH
Confidence 7 899988641 2444 4555778999999999976 8999999988999999999999987
Q ss_pred hC
Q 012785 455 LS 456 (456)
Q Consensus 455 l~ 456 (456)
++
T Consensus 389 ~~ 390 (393)
T PRK05764 389 LE 390 (393)
T ss_pred HH
Confidence 63
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=336.73 Aligned_cols=313 Identities=16% Similarity=0.214 Sum_probs=245.3
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.+.++++|+.|+|++++|+.+.++... .+ .. ...|++. + .++||++||++++. ++++|++|+|
T Consensus 18 ~~~~~i~l~~~~~~~~~p~~~~~a~~~-~~-~~---~~~y~~~-~-----~~~lr~~ia~~~~~------~~~~i~it~G 80 (356)
T PRK08056 18 SPDQLLDFSANINPLGMPVSLKRAIID-NL-DC---AERYPDV-E-----YRHLHQALARHHQV------PASWILAGNG 80 (356)
T ss_pred ChhhEEEeccccCCCCCCHHHHHHHHH-HH-Hh---cccCcCc-c-----HHHHHHHHHHHhCc------ChhhEEECCC
Confidence 346789999999998887766543221 11 11 2357764 4 49999999999853 4679999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-ccc---------cCCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-RFN---------KDGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~l~---------~~~~~~i~v~~P~NP 241 (456)
+++++.++++++ .+|+ +++++|+|..|...++..|++++.++.+.+ ++. ..++++++++|||||
T Consensus 81 a~~~l~~~~~~l-~~g~-----viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~k~v~l~~p~NP 154 (356)
T PRK08056 81 ETESIFAVVSGL-KPRR-----AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLTDAILEALTPDLDCLFLCTPNNP 154 (356)
T ss_pred HHHHHHHHHHHh-CCCC-----EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCccHHHHHhccCCCCEEEEeCCcCC
Confidence 999999999887 5654 778899999999999999999998876532 221 136789999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.++++ +|++++++||+||+|.+..+. +.....+++++++||||.||++|+|+||++++++++++.
T Consensus 155 TG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~ 234 (356)
T PRK08056 155 TGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVAR 234 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHH
Confidence 9999982 678899999999999763221 222335689999999999999999999999865788888
Q ss_pred HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 309 l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
+++.. ..++++.+.|.++..+++ + .+++++.++.++++|+.+.+.|+.++.+.+.++ +
T Consensus 235 l~~~~--~~~~~~~~~~~~a~~~l~----~--------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~------- 292 (356)
T PRK08056 235 MRRQQ--MPWSINAFAALAGEVILQ----D--------RAYQQATWQWLAEEGARFYQALCALPLLTVWPG-R------- 292 (356)
T ss_pred HHHhC--CCCchhHHHHHHHHHHhC----C--------HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-C-------
Confidence 87654 367788899999888886 2 567888899999999999999988754444322 3
Q ss_pred ccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC-CCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 389 RAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG-FSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg-~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++|+|++++.+...+.+.|.++||.+++|..|+ ...++|||++ .++++.+.+++.|+++++
T Consensus 293 ------~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~-~~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 293 ------ANYLFLRCERPDIDLQRALLTQRILIRSCANYPGLDSRYYRVAI-RSAAENERLLAALRNVLT 354 (356)
T ss_pred ------CcEEEEEcCCChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEE-cCHHHHHHHHHHHHHHHc
Confidence 348999987555667788889999999999994 4567999999 567888999999988763
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=346.29 Aligned_cols=400 Identities=14% Similarity=0.115 Sum_probs=272.7
Q ss_pred CcchhhHHHHHHHHHH-HHHHHHHHhcCccCCCCchhhHHHHhh----hhhccccCCCceeecccccccccCCCCCCccc
Q 012785 6 PLFSLKNLLVVSLALN-VSLIWRAMHESEKCNFDSSFSLQQQRR----SVMAGCVLKEKEHVSERTHLSLSSSPSPSPSS 80 (456)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (456)
|.|-+|+.| ..++-. ...-...|+-|+-+|.|......||=- =|...|...+...-+ .-|++... ..
T Consensus 2 s~fe~~~~~-~~~~~~~~~~~~~~l~agrgnpn~~~~~~r~af~~~~~f~~~e~~~~~~~~~~---~~g~~~~~----g~ 73 (521)
T TIGR03801 2 SPFELKDEL-IKLAKSTKKSDRTMLNAGRGNPNWTATTPREAFFLLGQFAVEETRRSWSYPGG---LGGMPQKE----GI 73 (521)
T ss_pred CchhHHHHH-HHHHhhcccccceeeeCCCCCcccccCcHHHHHHHHHHHHHHHHHHhhccccC---cCCCcCcc----hH
Confidence 578888887 555421 112233455788889997666554432 122233333322111 00111111 12
Q ss_pred cccccchhhhcCC-------CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHH-HH
Q 012785 81 SLTSTDIQSQDGG-------ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVV-RL 152 (456)
Q Consensus 81 ~~~~~~~~~~~~~-------~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia-~~ 152 (456)
..++...+....+ +++|+|+.|+|++++++++.+. . ..+. + . .|+++.| .++++++++ +|
T Consensus 74 ~~r~~~~~~~~~~~~g~~~l~~~i~l~~g~p~~~~~~~~~~~-~-~~~~-~---~-~Y~~p~g-----~~~~~e~iv~~y 141 (521)
T TIGR03801 74 EERFETFLAENKSQPGAEFLRDIISYVIDQLGFDPDAFLYEM-C-DGII-G---D-NYPVPDR-----MLPHSEKIVHQY 141 (521)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHhhcCCCCCCCCCHHHHHH-H-HHhh-c---C-CCCCCCC-----CHHHHHHHHHHH
Confidence 2232222111111 2569999999999977666432 1 1121 1 1 4765555 378887777 46
Q ss_pred HHHh-cCccCCCc--eEEEccCHHHHHHHHHHH-----hcCCCCCCCcEEEEeCCCCCChhhhhhhc--CCeEeeeccC-
Q 012785 153 HKVV-GNAITENH--HIVVGTGSTQLFQAALYA-----LSSQDASEPISVVSAAPYYSSYPSITDCV--KSRLYKWAGD- 221 (456)
Q Consensus 153 ~~~~-g~~~~~~~--~I~~t~G~~~al~~~~~~-----l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~--g~~~~~~~~d- 221 (456)
+... +....+++ +|++|+|+++++..++.+ ++.+|| +|++++|+|+.|...++.. |.+++.++.+
T Consensus 142 ~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD----~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~ 217 (521)
T TIGR03801 142 LIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGD----KIALMTPIFTPYLEIPELPRYDFEVVRIKADE 217 (521)
T ss_pred HHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCC----EEEEeCCCcHHHHHHHHHhcCCcEEEEeeccc
Confidence 6543 33333344 899999999999999887 689999 9999999999999998876 6776655443
Q ss_pred ------------cccccc---CCCeEEEEcCCCCCCcccchH--------Hhhhc--CcEEEeeecCCCCC--CCCCC-C
Q 012785 222 ------------AKRFNK---DGPYIELVTSPNNPDGSVRQS--------VVNRS--GGILVHDLAYYWPQ--YTSIT-Y 273 (456)
Q Consensus 222 ------------~~~l~~---~~~~~i~v~~P~NPtG~~~~~--------l~~~~--~~~iI~De~y~~~~--~~~~~-~ 273 (456)
.+.++. .++++++++|||||||.++++ +|+++ +++||+||+|.+.. +.++. .
T Consensus 218 ~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~ 297 (521)
T TIGR03801 218 MTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAE 297 (521)
T ss_pred ccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhh
Confidence 333432 367999999999999999993 67765 99999999998632 23332 3
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH------------H------------------------HHHHhhcc
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK------------M------------------------TKYIELNT 317 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~------------l------------------------~~~~~~~~ 317 (456)
.++++|+++||||.||++|||+||++++++.+.++ + ++.....+
T Consensus 298 ~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~ 377 (521)
T TIGR03801 298 LPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHT 377 (521)
T ss_pred CCCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhcc
Confidence 45799999999999999999999999974332221 1 34455567
Q ss_pred CcCChHHHH--H---HHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCC
Q 012785 318 IGVSKDSQL--R---AAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392 (456)
Q Consensus 318 ~~~s~~~q~--~---a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~ 392 (456)
.|.|.+.|. + +.++++ .. +++++.+++.+++|++.+.+.| ... +...++.|+|
T Consensus 378 ~g~s~p~Q~q~al~a~~all~---~~--------~~y~~~~~~~~~~R~~~l~~~L-g~~-~~~~~~~g~~--------- 435 (521)
T TIGR03801 378 AGLSTPQQVQMALFSLFALMD---KE--------NAYKAETKDICRRREKLLFRGL-GLP-LQEDPNDVAY--------- 435 (521)
T ss_pred CCCCcHHHHHHHHHHHHHHhc---cc--------hhHHHHHHHHHHHHHHHHHHhc-CCC-CcCCCCCeEE---------
Confidence 888888887 2 333443 22 6789999999999999999988 221 2335678888
Q ss_pred CCCceEEeecCc-------------------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHH
Q 012785 393 PQPAFAWLKCEQ-------------------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLS 452 (456)
Q Consensus 393 ~~~~f~~~~~~~-------------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~ 452 (456)
|+|++++. +.+.+.++++++||.+.||..||..++++|||++. +++++.++.++|+
T Consensus 436 ----Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~ 511 (521)
T TIGR03801 436 ----YTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIR 511 (521)
T ss_pred ----EEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Confidence 89998852 34567788889999999999999767899999985 8889999999999
Q ss_pred hhh
Q 012785 453 KIL 455 (456)
Q Consensus 453 ~~l 455 (456)
+++
T Consensus 512 ~~~ 514 (521)
T TIGR03801 512 KIL 514 (521)
T ss_pred HHH
Confidence 886
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=331.60 Aligned_cols=312 Identities=17% Similarity=0.208 Sum_probs=247.3
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
..+.+++||+.++|++.+|+.+.+..... + . ....|++..| .++||++++++++. ++++|++|+
T Consensus 19 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-~---~~~~Y~~~~g-----~~~lr~aia~~~~~------~~~~I~it~ 82 (349)
T PRK07908 19 DAGPGLLDFAVNVRHDTPPEWLRERLAAR-L-G---DLAAYPSTED-----ERRARAAVAARHGR------TPDEVLLLA 82 (349)
T ss_pred cCCCCeEEecCCCCCCCCCHHHHHHHHHH-h-h---HhhcCCCccc-----hHHHHHHHHHHhCc------ChhhEEECC
Confidence 34568999999999888777665432211 1 1 1346888888 59999999999863 468999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-ccc----cCCCeEEEEcCCCCCCccc
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-RFN----KDGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~l~----~~~~~~i~v~~P~NPtG~~ 245 (456)
|+++++.++++ + .++ .++++.|+|..+...++..|++++.+++|.+ +++ ..++++++++|||||||.+
T Consensus 83 Ga~~al~~~~~-l-~~~-----~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l~~~~~~i~l~np~NPTG~~ 155 (349)
T PRK07908 83 GAAEGFALLAR-L-RPR-----RAAVVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAVPDDADLVVIGNPTNPTSVL 155 (349)
T ss_pred CHHHHHHHHHh-c-CCC-----eEEEeCCCChHHHHHHHHcCCEEEeeccCcccCcChhHhccCCCEEEEcCCCCCCCCC
Confidence 99999999988 4 554 6888999999999999999999998877643 222 1357899999999999999
Q ss_pred chH-----HhhhcCcEEEeeecCCCC---CCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc
Q 012785 246 RQS-----VVNRSGGILVHDLAYYWP---QYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN 316 (456)
Q Consensus 246 ~~~-----l~~~~~~~iI~De~y~~~---~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~ 316 (456)
++. +|+ ++.++|+||+|.+. ...++. ...+++++++||||.||++|+|+||++++ +++++.+.+...
T Consensus 156 ~~~~~l~~l~~-~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~-~~~~~~~~~~~~-- 231 (349)
T PRK07908 156 HPAEQLLALRR-PGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGA-PDVLARLTRGRA-- 231 (349)
T ss_pred cCHHHHHHHHh-cCCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecC-HHHHHHHHhcCC--
Confidence 984 564 57889999999752 112222 23467999999999999999999999996 999999887754
Q ss_pred cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc
Q 012785 317 TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA 396 (456)
Q Consensus 317 ~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 396 (456)
.+..+++.|.++..++. +. ..+++++.++.++++|+.+.+.|+++ ++.+..|.+++
T Consensus 232 ~~~~~~~~~~a~~~~~~---~~-------~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~------------- 287 (349)
T PRK07908 232 HWPVGTLQLEAIAACCA---PR-------AVAEAAADAARLAADRAEMVAGLRAV-GARVVDPAAAP------------- 287 (349)
T ss_pred CCCccHHHHHHHHHHhc---cc-------chHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCCce-------------
Confidence 46677888877777665 22 25688899999999999999999987 46666666666
Q ss_pred eEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 397 FAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 397 f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. .+.+.+.|+++||.++||..|+. ++++|||++ .++++++++++.|++++
T Consensus 288 ~~~~~~~~-~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~-~~~~~~~~l~~al~~~~ 345 (349)
T PRK07908 288 FVLVRVPD-AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV-RPRAEVPVLVQALAEIL 345 (349)
T ss_pred EEEEECCc-HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe-CCCccHHHHHHHHHHHH
Confidence 99999974 56788889999999999999953 578999999 57778899999998875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=337.60 Aligned_cols=321 Identities=17% Similarity=0.169 Sum_probs=242.1
Q ss_pred CCeEEecCCC---CCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE--
Q 012785 94 ERIINVDHGD---PTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI-- 166 (456)
Q Consensus 94 ~~~i~l~~g~---p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I-- 166 (456)
.++|||+.|. |++..| +.+.+... .....+ ....|++..| .++||++|++|+...+.....+++|
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~-~~~~~~--~~~~Y~~~~G-----~~~lR~aia~~~~~~~~~~~~~~~i~v 97 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEA-RLLETE--TTKNYLPIEG-----LAAYRQAVQELLFGADSPALAAGRVAT 97 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHH-Hhcccc--cCCCcCCCCC-----CHHHHHHHHHHhcCCCCcccccCeEEE
Confidence 4689999995 444444 33333211 112222 2346999999 5999999999996555443235676
Q ss_pred EEccCHHHHHHHHHHHh--cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-C-------cccccc------CCC
Q 012785 167 VVGTGSTQLFQAALYAL--SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-D-------AKRFNK------DGP 230 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l--~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d-------~~~l~~------~~~ 230 (456)
++|+|+++++.++++++ +++|| +|++++|+|+.|...++..|++++.++. | .+.++. .+.
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd----~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~ 173 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDA----KVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGD 173 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCC----eEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCC
Confidence 99999999999998776 47999 9999999999999999999999998775 2 222321 124
Q ss_pred eEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC------CC---CCCCCCcEEEecCccccCCCCc
Q 012785 231 YIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------SI---TYPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~---~~~~~~~i~i~S~SK~~g~~G~ 293 (456)
++++++|||||||.++++ +|++++++||+||+|.+..+. ++ ....+++|+++||||+|+++|+
T Consensus 174 ~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl 253 (396)
T PRK09257 174 VVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGE 253 (396)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccc
Confidence 667779999999999993 788999999999999864331 11 1234689999999999998999
Q ss_pred eEEEEEE--eCHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 294 RIGWALV--KDME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 294 RiG~l~~--~~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|+||+++ ++++ +..++.........+++.+.|.++..+|. ++... ..++++++++++.++++|+.+.+.
T Consensus 254 RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~--~~~~~~~~~~r~~~~~rr~~l~~~ 328 (396)
T PRK09257 254 RVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILN---DPELR--AEWEAELEEMRERIKAMRQLLVEA 328 (396)
T ss_pred cceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhC---CHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999984 3344 33444444444456678999999999887 22000 012578889999999999999999
Q ss_pred HHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhH
Q 012785 368 VQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDEN 443 (456)
Q Consensus 368 L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~ 443 (456)
|++.+ .+++..|+||+ |+|++++ .+.+.++++++||.+.|. + ||+|+. ++++
T Consensus 329 L~~~~~~~~~~~~~p~gg~-------------~~w~~l~--~~~~~~l~~~~~V~~~p~-------~--ri~~~~~~~~~ 384 (396)
T PRK09257 329 LKAKGPSRDFDFIARQRGM-------------FSYSGLT--PEQVDRLREEFGVYAVGS-------G--RINVAGLNESN 384 (396)
T ss_pred HHhcCCCCCcccccccceE-------------EEecCCC--HHHHHHHHHcCCEEEcCC-------C--eEEEeeCCHHH
Confidence 99874 36777888998 9999984 467788889999999882 2 999985 9999
Q ss_pred HHHHHHHHHhhh
Q 012785 444 YNLFVQRLSKIL 455 (456)
Q Consensus 444 i~~~l~~L~~~l 455 (456)
+++++++|++++
T Consensus 385 i~~~~~~i~~~~ 396 (396)
T PRK09257 385 IDYVAEAIAAVL 396 (396)
T ss_pred HHHHHHHHHhhC
Confidence 999999999864
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=328.88 Aligned_cols=305 Identities=18% Similarity=0.258 Sum_probs=240.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.+.++|+|+.|+|++++|+.+.+..... +..+ ...+|+++ | .++||++|++|++..+ . ++++|++|+|
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~-~~~~--~~~~Y~~~-~-----~~~Lr~aia~~~~~~~--~-~~~~i~it~G 84 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRR-LNSD--TLRIYYDS-P-----DEELIEKILSYLDTDF--L-SKNNVSVGNG 84 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHH-hhhh--hhhcCCCC-C-----hHHHHHHHHHHhCCCC--C-CcceEEEcCC
Confidence 4468899999999999888776543221 2222 13446665 5 5999999999997544 2 4689999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccc----cCCCeEEEEcCCCCCCcccch
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFN----KDGPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~----~~~~~~i~v~~P~NPtG~~~~ 247 (456)
++++|.++++++ | +|++++|+|+.|...++..|++++.+++|.+... ..++++++++|||||||.+++
T Consensus 85 a~~~i~~~~~~~----d----~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~i~i~nP~NPTG~~~s 156 (335)
T PRK14808 85 ADEIIYVMMLMF----D----RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFE 156 (335)
T ss_pred HHHHHHHHHHHh----C----cEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChhHccCCCEEEEeCCCCCCCCCcC
Confidence 999999999887 5 7999999999999999999999999887654321 124689999999999999999
Q ss_pred H-----HhhhcCcEEEeeecCCCCC---CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc
Q 012785 248 S-----VVNRSGGILVHDLAYYWPQ---YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG 319 (456)
Q Consensus 248 ~-----l~~~~~~~iI~De~y~~~~---~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~ 319 (456)
+ ++ +++++||+||+|.+.. ..+.....+++|+++||||+||++|+|+||++++ +++++.+.+.+. .++
T Consensus 157 ~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~-~~~~~~l~~~~~--~~~ 232 (335)
T PRK14808 157 REEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSS-EKFIDAYNRVRL--PFN 232 (335)
T ss_pred HHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeC-HHHHHHHHHhcC--CCC
Confidence 4 55 5799999999998642 1122234578999999999999999999999997 899999987763 578
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEE
Q 012785 320 VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAW 399 (456)
Q Consensus 320 ~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~ 399 (456)
++.++|.++..+++ + .++.++.++.++++++.+.+.|++.+ +.+.++. ++|+|
T Consensus 233 ~~~~~q~a~~~~l~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~--------------g~f~~ 285 (335)
T PRK14808 233 VSYVSQMFAKVALD---H---------REIFEERTKFIVEERERMKSALREMG-YRITDSR--------------GNFVF 285 (335)
T ss_pred CCHHHHHHHHHHHh---C---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CEECCCC--------------CeEEE
Confidence 89999999988886 2 34566777888888999999999875 4444443 34789
Q ss_pred eecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 400 LKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 400 ~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
++++. +...+.+.|.++||.|+. | .+++||++ .++++++++++.|+++
T Consensus 286 ~~l~~~~~~~~~~~l~~~Gi~V~~---~---~~~~Risi-~~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 286 IFMEKEEKERLLEHLRAKNIAVRS---F---REGVRITI-GKREENDMILKELEVF 334 (335)
T ss_pred EeCCCccHHHHHHHHHHCCeEEEE---C---CCCeEEec-CCHHHHHHHHHHHHhh
Confidence 99863 456788899999999995 3 46899998 5678899999999864
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=332.47 Aligned_cols=315 Identities=20% Similarity=0.203 Sum_probs=240.7
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHh---cCccCCCceEEEcc
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV---GNAITENHHIVVGT 170 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~---g~~~~~~~~I~~t~ 170 (456)
+.+++|+.|+|++++++.+.+.... .+..+. ....|++ .| .++||++||+|++.. |..+. +++|++|+
T Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~Y~~-~G-----~~~Lr~aia~~~~~~~~~~~~v~-~~~I~it~ 98 (374)
T PRK02610 28 IQLDRLDTNEFPYDLPPDLKQKLAW-LYQQGI-ESNRYPD-GG-----HEALKQAIAEYVNESAAGSSQIT-PANISVGN 98 (374)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHH-HHhhcc-cccCCCC-Cc-----hHHHHHHHHHHhCccccccCCCC-HHHEEEcC
Confidence 3589999999999888776654221 112221 1235766 57 599999999999653 34454 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc-------CCCeEEEEc
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK-------DGPYIELVT 236 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~-------~~~~~i~v~ 236 (456)
|+++++..++.+++.+||. +|++++|+|+.|...++..|++++.++.|. +.++. .++++++++
T Consensus 99 Ga~~al~~~~~~~~~~g~~---~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~ 175 (374)
T PRK02610 99 GSDELIRSLLIATCLGGEG---SILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVV 175 (374)
T ss_pred ChHHHHHHHHHHHcCCCCC---eEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEe
Confidence 9999999888887777742 799999999999999999999998877543 33322 367999999
Q ss_pred CCCCCCcccchH-----Hhh-hcCcEEEeeecCCCCCCCC-CC--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 237 SPNNPDGSVRQS-----VVN-RSGGILVHDLAYYWPQYTS-IT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 237 ~P~NPtG~~~~~-----l~~-~~~~~iI~De~y~~~~~~~-~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
|||||||.+++. +++ .++++||+||+|.+..+.+ +. ...+++|+++||||+||+||+|+||++++ +++++
T Consensus 176 ~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~-~~l~~ 254 (374)
T PRK02610 176 HPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGH-PELIA 254 (374)
T ss_pred CCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecC-HHHHH
Confidence 999999999994 322 2589999999998643221 11 23467899999999999999999999996 99999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
.+.+.+. .++++.+.|.++..+|+ + .+.+.+.+++.+++ |+.+.+.|+.++.+.+ .|++++
T Consensus 255 ~l~~~~~--~~~~~~~~q~a~~~~l~---~--------~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~-~p~~g~---- 315 (374)
T PRK02610 255 VLEKVRL--PYNLPSFSQLAAQLALE---H--------RQELLAAIPEILQE-RDRLYQALQELPQLRV-WPSAAN---- 315 (374)
T ss_pred HHHHhcC--CCCCCHHHHHHHHHHhc---C--------HHHHHHHHHHHHHH-HHHHHHHHHhCCCcEe-CCCcce----
Confidence 9988763 57789999999998886 2 25666766666655 6778888987654443 355555
Q ss_pred cccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 388 GRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+.+.++++||.|+++ ++++||+++. ++++++++++|+++++
T Consensus 316 ---------f~~~~l~~~~~~~~~~~~l~~~gi~v~~~------~~~lRls~~~-~~~~~~~l~~l~~~l~ 370 (374)
T PRK02610 316 ---------FLYLRLSQDAALAALHQALKAQGTLVRHT------GGGLRITIGT-PEENQRTLERLQAALT 370 (374)
T ss_pred ---------EEEEeCCCCCCHHHHHHHHHHCCEEEEeC------CCeEEEeCCC-HHHHHHHHHHHHHHHh
Confidence 99999964 5677788889999999873 5789999964 5678999999998763
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=331.73 Aligned_cols=308 Identities=17% Similarity=0.225 Sum_probs=245.0
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
+.++|+|+.|+|++.+++.+.+.. ... .....|+++ + .++||++|+++++. ++++|++|+|+
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~-----~~~-~~~~~Yp~~-~-----~~~lr~~ia~~~~~------~~~~I~~t~Ga 112 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEAL-----GNM-KFPYVYPDP-E-----SRRLRAALAEDSGL------ESENILVGCGA 112 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHH-----Hhh-HhhccCCCC-C-----HHHHHHHHHHHhCc------ChhhEEEcCCH
Confidence 468899999998887776655431 111 112458775 4 48999999999963 56799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------ccccc----cCCCeEEEEcCCCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFN----KDGPYIELVTSPNNPD 242 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~----~~~~~~i~v~~P~NPt 242 (456)
++++.+++.+++++|| +|++++|+|+.|...++..|++++.++.+ .+.++ ..++++++++||||||
T Consensus 113 ~~~i~~~~~~~~~~gd----~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPT 188 (380)
T PLN03026 113 DELIDLLMRCVLDPGD----KIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPD 188 (380)
T ss_pred HHHHHHHHHHhcCCCC----EEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 9999999999999999 99999999999999999999998877653 33332 3467999999999999
Q ss_pred cccchH-----HhhhcCcEEEeeecCCCCCCC----CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH
Q 012785 243 GSVRQS-----VVNRSGGILVHDLAYYWPQYT----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI 313 (456)
Q Consensus 243 G~~~~~-----l~~~~~~~iI~De~y~~~~~~----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~ 313 (456)
|.+++. +++.. +++|+||+|.+..+. ......+++|+++||||.||++|+|+||++++ +++++.+.+.+
T Consensus 189 G~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~-~~~i~~l~~~~ 266 (380)
T PLN03026 189 GSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFP-LSIIEYLWRAK 266 (380)
T ss_pred CCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecC-HHHHHHHHHhc
Confidence 999983 56544 899999999853221 11134578999999999999999999999997 99999998876
Q ss_pred hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCC
Q 012785 314 ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEP 393 (456)
Q Consensus 314 ~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (456)
. .++++.++|.++.++|+ + .+++++.++.++++|+.+.+.|++++.+.+ .|.++
T Consensus 267 ~--~~~~~~~~q~aa~~aL~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~----------- 320 (380)
T PLN03026 267 Q--PYNVSVAAEVAACAALS---N---------PKYLEDVKNALVEERERLFGLLKEVPFLEP-YPSDA----------- 320 (380)
T ss_pred C--CCCCCHHHHHHHHHHhh---C---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCC-----------
Confidence 4 57889999999999987 2 467889999999999999999998764332 33444
Q ss_pred CCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 394 QPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 394 ~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
+|+|++++. +...+.+.|.++||.|+++..++ .++++|||++ ++++++.+++.|+++
T Consensus 321 --~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~-~~~~lRis~~-~~~~~~~l~~al~~~ 379 (380)
T PLN03026 321 --NFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKE-LKGYIRVSVG-KPEHTDALMEALKQL 379 (380)
T ss_pred --eEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCC-CCCEEEEecC-CHHHHHHHHHHHHHh
Confidence 499999863 45677888889999999987654 4679999995 667788888888764
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=333.25 Aligned_cols=309 Identities=20% Similarity=0.280 Sum_probs=245.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
.++++|+.|+|++.+++.+.+... .......+|++ .| .++||+++|++++. ++++|++|+|++
T Consensus 29 ~~~i~l~~n~~~~~~~~~v~~a~~-----~~~~~~~~~p~-~g-----~~~lr~~ia~~~~~------~~~~i~~t~G~~ 91 (359)
T PRK03158 29 EKIVKLASNENPYGPSPKVKEAIA-----AHLDELALYPD-GY-----APELRTKVAKHLGV------DEEQLLFGAGLD 91 (359)
T ss_pred CceEEecCCCCCCCCCHHHHHHHH-----HHHHHhhcCCC-Cc-----HHHHHHHHHHHhCC------CHHHEEECCCHH
Confidence 478999999998866655543321 11112334554 56 59999999999953 457999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----cccccc---CCCeEEEEcCCCCCCccc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFNK---DGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~---~~~~~i~v~~P~NPtG~~ 245 (456)
+++.+++++++++|| +|++++|+|+.+...+...|.++..++.+ .+.++. .++++++++|||||||.+
T Consensus 92 ~~l~~~~~~~~~~gd----~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~ 167 (359)
T PRK03158 92 EVIQMISRALLNPGT----NTVMAEPTFSQYRHNAIIEGAEVREVPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTY 167 (359)
T ss_pred HHHHHHHHHHhCCCC----EEEEcCCCHHHHHHHHHHcCCeEEEEecCCCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCC
Confidence 999999999999999 99999999999999999999999887754 333332 367899999999999999
Q ss_pred chH-----Hhhh--cCcEEEeeecCCCCCCC----C---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH
Q 012785 246 RQS-----VVNR--SGGILVHDLAYYWPQYT----S---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK 311 (456)
Q Consensus 246 ~~~-----l~~~--~~~~iI~De~y~~~~~~----~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~ 311 (456)
++. +++. +++++|+||+|.+..+. + .....+++|+++||||.||++|+|+||++++ +++++++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~~ 246 (359)
T PRK03158 168 VNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIAS-EELIEKLNI 246 (359)
T ss_pred CCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCC-HHHHHHHHH
Confidence 983 5554 69999999999753221 1 1123578999999999999999999999997 999999988
Q ss_pred HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccC
Q 012785 312 YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAF 391 (456)
Q Consensus 312 ~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~ 391 (456)
... ++++|.++|.++.++|+ + .+++++.++.++++++.+.+.|++.+ +.+. +.++
T Consensus 247 ~~~--~~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~g--------- 301 (359)
T PRK03158 247 ARP--PFNTTRIAQYAAIAALE---D---------QAFLKECVEKNAEGLEQYYAFCKEYG-LFYY-PSQT--------- 301 (359)
T ss_pred hcC--CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CeeC-CCcC---------
Confidence 764 57899999999999997 2 46788888889999999999998863 4433 2233
Q ss_pred CCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 392 EPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 392 ~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+|+|++++.+...+.+.|.++||.++||+.|+. ++++||+++ +++++++++++|++++
T Consensus 302 ----~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~-~~~iRi~~~-~~~~~~~l~~al~~~~ 359 (359)
T PRK03158 302 ----NFIFVDTGRDANELFEALLKKGYIVRSGAALGF-PTGVRITIG-LKEQNDKIIELLKELL 359 (359)
T ss_pred ----cEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCC-CCeEEEecC-CHHHHHHHHHHHHHhC
Confidence 389999865566777878889999999999974 789999994 7889999999998864
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=328.64 Aligned_cols=305 Identities=15% Similarity=0.157 Sum_probs=240.1
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
..++++.+++.+.+++. . .. ....|+++. .++||++||++++. ++++|++|+|+++
T Consensus 32 ~~~~~~~ne~~~~~~~~--~-------~~---~~~~Y~~~~------~~~lr~~ia~~~~~------~~~~I~~t~G~~~ 87 (364)
T PRK04781 32 GDVWLNANESAWANPAD--P-------DA---STRRYPDPQ------PPGLRSALAALYGC------APEQLLIGRGSDE 87 (364)
T ss_pred CCEEeeCCCCCCCCChh--h-------cc---hhccCCCCC------HHHHHHHHHHHhCc------ChHHEEEeCCHHH
Confidence 45889988877765531 0 01 134688876 38999999999863 4679999999999
Q ss_pred HHHHHHHHhcCCC-CCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------ccccc----cCCCeEEEEcCCCC
Q 012785 175 LFQAALYALSSQD-ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFN----KDGPYIELVTSPNN 240 (456)
Q Consensus 175 al~~~~~~l~~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~----~~~~~~i~v~~P~N 240 (456)
+|.+++++++.+| + +|++++|+|..|...++..|.+++.++++ .+.+. ..++++++++||||
T Consensus 88 ~l~~~~~~~~~~g~~----~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~N 163 (364)
T PRK04781 88 AIDLLVRALCVPGRD----AVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSN 163 (364)
T ss_pred HHHHHHHHhcCCCCC----eEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCC
Confidence 9999999999888 7 89999999999999999999999888763 12221 23678999999999
Q ss_pred CCcccchH-----Hhh--hcCcEEEeeecCCCCCCC----CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 241 PDGSVRQS-----VVN--RSGGILVHDLAYYWPQYT----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 241 PtG~~~~~-----l~~--~~~~~iI~De~y~~~~~~----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
|||.+++. +++ +++++||+||+|.+..+. +.....+++|+++||||+||+||+|+||++++ +++++.+
T Consensus 164 PTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~-~~l~~~l 242 (364)
T PRK04781 164 PAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIAN-AELIAVL 242 (364)
T ss_pred CCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCC-HHHHHHH
Confidence 99999983 443 247899999999864332 12244578999999999999999999999997 9999999
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
.+.+. .++++.+.|.++..+|+ ++. .++..+.++.++++|+.+.+.|++++++....|.+
T Consensus 243 ~~~~~--~~~~~~~~~~~a~~~l~---~~~-------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~-------- 302 (364)
T PRK04781 243 RRCQA--PYPVPTPCAALAEQALS---APA-------LAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQ-------- 302 (364)
T ss_pred HhccC--CCCCCHHHHHHHHHHHh---ccc-------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCC--------
Confidence 98865 67889999999998887 331 24455566678999999999998875443223334
Q ss_pred cCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 390 AFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++|+|++++ +.+.+.+.++++||.|+||..|+..++++||++ ..+++++.+++.|+++.
T Consensus 303 -----g~f~~~~~~-~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~-~~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 303 -----GNFLLVRFD-DAEAAFQALLAAGVVVRDQRAAPRLSDALRITL-GTPEQNDRVLAALQRTQ 361 (364)
T ss_pred -----CcEEEEEcC-CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeC-CCHHHHHHHHHHHHHHH
Confidence 449999997 456778888999999999998865578999999 46778899999988764
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=326.68 Aligned_cols=310 Identities=21% Similarity=0.250 Sum_probs=242.2
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
..++|+.|+|++++|+.+.+... ..+... ....|++..+ ++||+++|++++. ++++|++|+|+++
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~-~~~~~~--~~~~y~~~~~------~~lr~~ia~~~~~------~~~~i~it~G~~~ 87 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQ-EIVKSS--QVNIYPDPTA------EKLREELARYCSV------VPTNIFVGNGSDE 87 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHH-HHhhcC--cccCCCCccH------HHHHHHHHHHhCC------CcccEEEecCHHH
Confidence 45899999999887766554322 112111 2345776553 8999999999853 4679999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------cccc----cCCCeEEEEcCCCCCCcc
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------KRFN----KDGPYIELVTSPNNPDGS 244 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~----~~~~~~i~v~~P~NPtG~ 244 (456)
++.+++.+++++|| +|++++|+|+.+...++..|++++.++.|. +.++ ..++++++++|||||||.
T Consensus 88 ~l~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~ 163 (351)
T PRK14807 88 IIHLIMLAFINKGD----VVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGS 163 (351)
T ss_pred HHHHHHHHhcCCCC----EEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCC
Confidence 99999999999999 999999999999999999999998876653 2232 236789999999999999
Q ss_pred cchH-----HhhhcCcEEEeeecCCCCC---CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc
Q 012785 245 VRQS-----VVNRSGGILVHDLAYYWPQ---YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN 316 (456)
Q Consensus 245 ~~~~-----l~~~~~~~iI~De~y~~~~---~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~ 316 (456)
+++. ++++++.++|+||+|.+.. ..+.....+++|+++||||.+|+||+|+||++++ +++++.+...+.
T Consensus 164 ~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~-~~~~~~~~~~~~-- 240 (351)
T PRK14807 164 VIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVAN-ENILKYLNLVKS-- 240 (351)
T ss_pred CCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecC-HHHHHHHHHccC--
Confidence 9983 6777788899999997531 1122234578999999999999999999999996 999999987654
Q ss_pred cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc
Q 012785 317 TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA 396 (456)
Q Consensus 317 ~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 396 (456)
.++++.++|.++..+|+ +.++++..+.++++|+.+.+.|++.+++.+. +.++ +
T Consensus 241 ~~~~~~~~q~~~~~~l~-------------~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~-------------~ 293 (351)
T PRK14807 241 PYNINSLSQVIALKVLR-------------TGVLKERVNYILNERERLIKELSKIPGIKVY-PSKT-------------N 293 (351)
T ss_pred CCCcCHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCc-------------c
Confidence 46789999999999997 2356667778889999999999876555543 2333 3
Q ss_pred eEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 397 FAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 397 f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++ +.+.+.+.|.++||.|+++..+...++++||+++ .+++.+.+++.|++++
T Consensus 294 ~~~i~~~-~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 294 FILVKFK-DADYVYQGLLERGILVRDFSKVEGLEGALRITVS-SCEANDYLINGLKELL 350 (351)
T ss_pred EEEEEcC-CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHhh
Confidence 8999997 4567788888999999986543334789999995 5677889999888764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=331.61 Aligned_cols=312 Identities=20% Similarity=0.271 Sum_probs=242.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.+..+|+|+.|+|++.+++.+.+... . ... ....|++..| .+||+++|++++. ++++|++|+|
T Consensus 34 ~~~~~i~l~~~~~~~~~~~~~~~al~-~-~~~---~~~~Y~~~~g------~~lr~~ia~~~~~------~~~~i~~t~G 96 (371)
T PRK05166 34 GVPRIAKLGSNENPLGPSPAVRRAFA-D-IAE---LLRLYPDPQG------RALREAIAARTGV------PADRIILGNG 96 (371)
T ss_pred CCcceEEcCCCCCCCCCCHHHHHHHH-H-HHH---HhhcCCCCcH------HHHHHHHHHHhCc------CHHHEEEcCC
Confidence 35578999999988766654543321 1 111 2346998888 6999999999853 4679999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------ccccc---CCCeEEEEcCCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------KRFNK---DGPYIELVTSPNNPD 242 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~~---~~~~~i~v~~P~NPt 242 (456)
+++++.+++.+++++|| +|+++.|+|+.+...++..|++++.++.|. +.++. .++++++++||||||
T Consensus 97 ~~~~l~~~~~~~~~~gd----~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPt 172 (371)
T PRK05166 97 SEDLIAVICRAVLRPGD----RVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPV 172 (371)
T ss_pred HHHHHHHHHHHhcCCCC----EEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCC
Confidence 99999999999999999 999999999999999999999998777653 33322 356899999999999
Q ss_pred cccchH-----Hhhh--cCcEEEeeecCCCCCC----CCC----CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 243 GSVRQS-----VVNR--SGGILVHDLAYYWPQY----TSI----TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 243 G~~~~~-----l~~~--~~~~iI~De~y~~~~~----~~~----~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
|.+++. +++. .+++||+||+|.+..+ .+. ....+++|+++||||.||+||+|+||++++++++++
T Consensus 173 G~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~ 252 (371)
T PRK05166 173 GSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVG 252 (371)
T ss_pred CCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHH
Confidence 999983 4332 4889999999985321 111 122457999999999999999999998876688988
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
.+.+.+. .++++.++|.++.++|. + .+++++.++.++++|+.+.+.|++.+ +.+. |.+++
T Consensus 253 ~~~~~~~--~~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~-p~~g~---- 312 (371)
T PRK05166 253 LLDRVRT--PFNVNGAAQAAALAALD---D---------EEHLAKGVALALAERERLKKELAEMG-YRIA-PSRAN---- 312 (371)
T ss_pred HHHHhcc--CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHHHCc-CeeC-CCcCC----
Confidence 8877653 57789999988888886 2 46888889999999999999999874 4432 33444
Q ss_pred cccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 388 GRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++.+...+.+.|.++||.++||..++. +++|||+++ ++++++.+++.|+.++
T Consensus 313 ---------fl~~~~~~~~~~l~~~l~~~gi~v~p~~~~~~-~~~iRi~~~-~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 313 ---------FLFFDARRPASAVAEALLRQGVIVKPWKQPGF-ETFIRVSIG-SPEENDHFVAALDKVL 369 (371)
T ss_pred ---------EEEEeCCCCHHHHHHHHHHCCeEEecCCCCCC-CCeEEEEcC-CHHHHHHHHHHHHHHh
Confidence 89999875667788888889999999987654 889999995 4556677777776654
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=307.53 Aligned_cols=323 Identities=18% Similarity=0.208 Sum_probs=269.5
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~ 172 (456)
.++++|.+.|.+|+.|+.+.++.. ..+..+ ...|+ .+ +.++-++|++|.. +++.... ++.|++++|.
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~-~rvdhG---vfGY~--~~-----~~~~~~ai~~w~~~r~~~~i~-~e~i~~~p~V 92 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALR-ERVDHG---VFGYP--YG-----SDELYAAIAHWFKQRHQWEIK-PEWIVFVPGV 92 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHH-HHHhcC---CCCCC--CC-----CHHHHHHHHHHHHHhcCCCCC-cceEEEcCcc
Confidence 689999999999999988876533 222223 23466 33 4889999999995 5666665 5789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEee---------eccCcccccc----CCCeEEEEcCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYK---------WAGDAKRFNK----DGPYIELVTSPN 239 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~---------~~~d~~~l~~----~~~~~i~v~~P~ 239 (456)
..++..++++|.++|| .|++..|.|+++....+..|.+++. |.+|.+.+++ .+.+++++||||
T Consensus 93 Vpgi~~~I~~~T~~gd----~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPH 168 (388)
T COG1168 93 VPGISLAIRALTKPGD----GVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPH 168 (388)
T ss_pred hHhHHHHHHHhCcCCC----eeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCC
Confidence 9999999999999999 9999999999999999999999874 4567777664 356899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC----CCCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT----YPADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||||.++++ +|++||+.||+||++.+.-+ .++. ...++.|.+.|-||+|+++|+++++++++|
T Consensus 169 NP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n 248 (388)
T COG1168 169 NPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISN 248 (388)
T ss_pred CCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecC
Confidence 999999994 89999999999999986322 2221 235889999999999999999999999999
Q ss_pred HHHHHHHHHH-HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCC
Q 012785 303 MEVAKKMTKY-IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-GLFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~-~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 380 (456)
+++.+++.+. ......++|.++..+..++++ +| +.|++.+.+.++.+++++.+.|.+. |.+.+..|+
T Consensus 249 ~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~---~G--------~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~ 317 (388)
T COG1168 249 RELRAKFLKRLKRNGLHGPSALGIIATEAAYN---QG--------EPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQ 317 (388)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH---hc--------hHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCC
Confidence 9886665544 445677889999999998888 55 7899999999999999999999875 789999999
Q ss_pred CcccccccccCCCCCceEEeecCc---cH-HHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EI-EDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~-~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|.| .+|++|.. +. +.-+.++.+.+|.+.+|..||. +.+++|++++++++.+++++++|+..+
T Consensus 318 gTY-------------L~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al 384 (388)
T COG1168 318 GTY-------------LAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRAL 384 (388)
T ss_pred Cce-------------eeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHH
Confidence 988 69999964 43 4455567789999999999996 679999999999999999999999876
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 385 ~ 385 (388)
T COG1168 385 K 385 (388)
T ss_pred h
Confidence 4
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=329.57 Aligned_cols=311 Identities=19% Similarity=0.251 Sum_probs=244.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+++|+|+.|+|++++++.+.+... ..+... ...|++.. .++||++||++++. ++++|++|+|++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~-~~~~~~---~~~y~~~~------~~~lr~aia~~~~~------~~~~I~it~G~~ 87 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIR-AALGDD---LRLYPDPN------ADALRQAIAAYYGL------DPEQVFVGNGSD 87 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHH-HHhhhh---hhcCCCCc------HHHHHHHHHHHhCC------CHHHEEEcCCHH
Confidence 578999999999876654443322 112222 34687764 38999999999863 568999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------ccccccCCCeEEEEcCCCCCCcccch
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNKDGPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~~~~~~i~v~~P~NPtG~~~~ 247 (456)
++|.+++++++++|| +|++++|+|+.|...++..|++++.++.| .+.++. ..++++++|||||||.+++
T Consensus 88 ~al~~~~~~l~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~-~~~~v~~~~P~NPtG~~~~ 162 (353)
T PRK05387 88 EVLAHAFLAFFNHDR----PLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR-PNGGIIFPNPNAPTGIALP 162 (353)
T ss_pred HHHHHHHHHhcCCCC----EEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh-cCCEEEEeCCCCCCCCCCC
Confidence 999999999999999 99999999999999999999998877654 333432 3578899999999999998
Q ss_pred H-----Hhhhc-CcEEEeeecCCCCCCC---CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh-cc
Q 012785 248 S-----VVNRS-GGILVHDLAYYWPQYT---SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL-NT 317 (456)
Q Consensus 248 ~-----l~~~~-~~~iI~De~y~~~~~~---~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~-~~ 317 (456)
. +++.. ++++|+||+|.+.... ++....+++++++||||.||+||+|+||++++ ++++++++..... ..
T Consensus 163 ~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~~~~l~~~~~~~~~ 241 (353)
T PRK05387 163 LAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGH-PELIEALNRVKNSFNS 241 (353)
T ss_pred HHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecC-HHHHHHHHHhhccCCC
Confidence 3 66554 9999999999753211 22234578999999999999999999999996 9999999887643 25
Q ss_pred CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCce
Q 012785 318 IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF 397 (456)
Q Consensus 318 ~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f 397 (456)
++++.+.|.++.++|. + .+++++.+++++++++.+.+.|++.+ +.+. |.+++ |
T Consensus 242 ~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~~~~-------------~ 294 (353)
T PRK05387 242 YPLDRLAQAGAIAAIE---D---------EAYFEETRAKVIATRERLVEELEALG-FEVL-PSKAN-------------F 294 (353)
T ss_pred CCcCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CeEC-CCcCc-------------E
Confidence 6789999999998886 2 45778889999999999999999874 4432 33444 8
Q ss_pred EEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 398 AWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 398 ~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+|++++. +.+.+.+.|.++||.+++.... ..++++||+++ +++++++++++|++++
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~-~~~~~iRis~~-~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 295 VFARHPSHDAAELAAKLRERGIIVRHFNKP-RIDQFLRITIG-TDEEMEALVDALKEIL 351 (353)
T ss_pred EEEECCCCCHHHHHHHHHHCCEEEEECCCC-CCCCeEEEEeC-CHHHHHHHHHHHHHHh
Confidence 9999864 5667778888999999863222 23679999995 6789999999999876
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=334.89 Aligned_cols=322 Identities=16% Similarity=0.130 Sum_probs=236.1
Q ss_pred CCeEEecCCCC-CCCchhHhhhccccc--ccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhc-CccCCCceEE--
Q 012785 94 ERIINVDHGDP-TMYEKYWQKVGDKTT--IVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVG-NAITENHHIV-- 167 (456)
Q Consensus 94 ~~~i~l~~g~p-~~~~~~~~~~~~~~~--~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g-~~~~~~~~I~-- 167 (456)
+++|||+.|.| ++.++....+..... .+... .....|+++.| .++||+++++|+...+ .... +++|+
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~Y~~~~G-----~~~lR~aia~~~~~~~~~~~~-~~~v~~~ 101 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEK-NLDKEYLPIEG-----LQSFIEAAQKLLFGEASYALA-EKRIATV 101 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccc-cCCCCCCCCCC-----CHHHHHHHHHHhcCCCccccc-cCeEEEe
Confidence 57899999986 344332221111100 01111 12357999999 5999999999985433 3333 56888
Q ss_pred EccCHHHHHHHHHH---HhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc------CCC
Q 012785 168 VGTGSTQLFQAALY---ALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK------DGP 230 (456)
Q Consensus 168 ~t~G~~~al~~~~~---~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~------~~~ 230 (456)
.|.|+++++.+++. +++++|| +|++++|+|+.|...++..|++++.+++ |.+.++. .++
T Consensus 102 ~t~G~~~al~~~~~~l~~~~~~Gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~ 177 (404)
T PTZ00376 102 QALSGTGALRLGFEFLKRFLPAGT----TVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGS 177 (404)
T ss_pred eccCcchHHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCC
Confidence 59999999988875 6678999 9999999999999999999999988876 2222221 134
Q ss_pred eEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCccccCCCC
Q 012785 231 YIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~SK~~g~~G 292 (456)
++++++|||||||.++++ +|++++++||+||+|.+..+.. + ....+++|+++||||+|++||
T Consensus 178 ~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G 257 (404)
T PTZ00376 178 VVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYG 257 (404)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccc
Confidence 678889999999999993 6889999999999998643321 1 123458999999999999999
Q ss_pred ceEEEEE--EeCHHHHHHH----HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 293 TRIGWAL--VKDMEVAKKM----TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 293 ~RiG~l~--~~~~~~~~~l----~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
+|+||++ +.++++++.+ .+.......+++.+.|.++..+|+ ++... ..+.+++++.++.++++|+.+.+
T Consensus 258 lRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~--~~~~~~~~~~~~~~~~~r~~l~~ 332 (404)
T PTZ00376 258 ERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILS---DPELR--AEWLSELKEMSGRIQNMRQLLYD 332 (404)
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhC---CHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999984 2247655544 333333345568899999999997 22000 00124467778899999999999
Q ss_pred HHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec-CChh
Q 012785 367 AVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML-DRDE 442 (456)
Q Consensus 367 ~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~-~~~e 442 (456)
.|++.+ .+.+..|+||| |+|++++ .+.+..+++++||.+.|| + ||+++ .+++
T Consensus 333 ~L~~~~~~~~~~~~~p~gg~-------------f~~~~~~--~~~~~~L~~~~~v~v~p~-------~--Ris~~~~~~~ 388 (404)
T PTZ00376 333 ELKALGSPGDWEHIINQIGM-------------FSFTGLT--KEQVERLIEKYHIYLLDN-------G--RISVAGLTSK 388 (404)
T ss_pred HHHhcCCCCcccccccCceE-------------EEecCCC--HHHHHHHHHhCCEeecCC-------C--eEEEeccCHH
Confidence 999874 24455778888 9999984 566777777889999996 1 99997 4999
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
+++.++++|++++
T Consensus 389 ~~~~~~~~l~~~~ 401 (404)
T PTZ00376 389 NVDYVAEAIHDVV 401 (404)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999886
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=327.20 Aligned_cols=321 Identities=20% Similarity=0.267 Sum_probs=249.5
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
.+.++||+.|+|++++++.+.+... ............|++..| .++||++++++++. ++... ++++|++|+|
T Consensus 32 ~~~~~~l~~g~p~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~l~~~~~~~~-~~~~i~~t~G 104 (394)
T PRK06836 32 ADNVFDFSLGNPSVPPPAAVKEALR-ELAEEEDPGLHGYMPNAG-----YPEVREAIAESLNRRFGTPL-TADHIVMTCG 104 (394)
T ss_pred CCCeEEecCcCCCCCCCHHHHHHHH-HHHhcCCcCcccCCCCCC-----CHHHHHHHHHHHHHHhCCCC-CcCcEEEeCC
Confidence 3568999999998776655554322 112211111346877788 59999999999965 45544 4679999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-------cccc---CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-------RFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-------~l~~---~~~~~i~v~~P~NP 241 (456)
++++++.++.+++.+|| +|++++|+|+.+...++..|++++.++.|.+ .+++ .+++++++++||||
T Consensus 105 ~~~al~~~~~~l~~~gd----~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NP 180 (394)
T PRK06836 105 AAGALNVALKAILNPGD----EVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNP 180 (394)
T ss_pred hHHHHHHHHHHhcCCCC----EEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCC
Confidence 99999999999999999 9999999999999999999999988876544 2222 36789999999999
Q ss_pred CcccchH--------Hhhh------cCcEEEeeecCCCCCCC-----CCCCCCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 242 DGSVRQS--------VVNR------SGGILVHDLAYYWPQYT-----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 242 tG~~~~~--------l~~~------~~~~iI~De~y~~~~~~-----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||.+++. +|++ ++++||+||+|.+..+. .+....+++++++||||.||+||+|+||++++
T Consensus 181 tG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~- 259 (394)
T PRK06836 181 TGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVN- 259 (394)
T ss_pred CCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecC-
Confidence 9999882 6777 89999999999864321 22234578999999999999999999999997
Q ss_pred HHHHHH------HHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012785 303 MEVAKK------MTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 303 ~~~~~~------l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
+++.+. +...... ...+++.+.|.++..++. +. ..++.++++++.+.+.|++++ +.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~-------------~~~~~~~~~r~~l~~~L~~~g-~~ 322 (394)
T PRK06836 260 PEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD---AT-------------VDVSIYKRNRDLLYDGLTELG-FE 322 (394)
T ss_pred HHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC---Ch-------------HHHHHHHHHHHHHHHHHHhCC-CE
Confidence 665332 1111111 124688899999999887 21 125678899999999999875 67
Q ss_pred ccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 376 VPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
+..|.|++ |+|++++. +...+.+.|+++||.++||..|+. .+++||+++.+++++++++++|+++
T Consensus 323 ~~~~~gg~-------------~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~-~~~iRi~~~~~~~~~~~~i~~l~~~ 388 (394)
T PRK06836 323 CVKPQGAF-------------YLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGC-PGYFRLSYCVDTETIERSLPAFEKL 388 (394)
T ss_pred eecCCceE-------------EEEEeCCCCCHHHHHHHHHhCCEEEECchhcCC-CCeEEEEecCCHHHHHHHHHHHHHH
Confidence 77777887 89998864 556677888999999999999975 6899999988999999999999988
Q ss_pred hC
Q 012785 455 LS 456 (456)
Q Consensus 455 l~ 456 (456)
++
T Consensus 389 l~ 390 (394)
T PRK06836 389 AK 390 (394)
T ss_pred HH
Confidence 63
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=327.35 Aligned_cols=312 Identities=18% Similarity=0.171 Sum_probs=247.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
.++|+|+.|+|++++++.+.+.... .+... ....|++. | .++||+++|+|++. .++++|++|+|++
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~Y~~~-~-----~~~lr~~ia~~~~~-----~~~~~I~~t~G~~ 91 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGE-RLAEV--ALNRYPDP-R-----AAALKAALRAAMGV-----PAGADVLLGNGSD 91 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHH-Hhhcc--ccccCCCC-C-----HHHHHHHHHHHhCc-----CCCCcEEEcCCHH
Confidence 5789999999999888776654221 12111 13468874 5 49999999999963 1235899999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------cccc----cCCCeEEEEcCCCCCCc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------KRFN----KDGPYIELVTSPNNPDG 243 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~----~~~~~~i~v~~P~NPtG 243 (456)
+++.+++++++.+|| +|++++|+|+.+...++..|++++.+++|. +.++ ..++++++++|||||||
T Consensus 92 ~~i~~~~~~~~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG 167 (356)
T PRK04870 92 ELIQLLALACAKPGA----TVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTG 167 (356)
T ss_pred HHHHHHHHHhcCCCC----EEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCC
Confidence 999999999999999 999999999999999999999999877653 2332 23678999999999999
Q ss_pred ccchH-----HhhhcCcEEEeeecCCCCCCCC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh
Q 012785 244 SVRQS-----VVNRSGGILVHDLAYYWPQYTS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL 315 (456)
Q Consensus 244 ~~~~~-----l~~~~~~~iI~De~y~~~~~~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~ 315 (456)
.+++. +++..+.++|+||+|.+....+ .....+++++++|||| +++||+|+||++++ +++++++...+.
T Consensus 168 ~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~-~~~i~~~~~~~~- 244 (356)
T PRK04870 168 NLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGH-PAWIAELDKVRP- 244 (356)
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCC-HHHHHHHHHccC-
Confidence 99983 5554588999999998532211 1134468999999999 89999999999997 899999888763
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCC
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQP 395 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~ 395 (456)
.++++.+.|.++..+++ + .+++++.++.++++++.+.+.|++++++.+. +.+++
T Consensus 245 -~~~~~~~~q~~a~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~------------ 298 (356)
T PRK04870 245 -PYNVNVLTQATALFALE---H---------VDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAAN------------ 298 (356)
T ss_pred -CCcCCHHHHHHHHHHHh---C---------HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCe------------
Confidence 56789999999888886 2 3467888899999999999999987555443 33333
Q ss_pred ceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 396 AFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 396 ~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++ +.+.+.+.|+++||.|+||..|+. .++++||+++ +++++++++++|++++
T Consensus 299 -~~~~~~~-~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 299 -FILVRVP-DAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG-TPEENAQFLAALKAAL 356 (356)
T ss_pred -EEEEECC-CHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC-CHHHHHHHHHHHHHhC
Confidence 8999997 456677889999999999999963 5789999995 6788899999998875
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=326.76 Aligned_cols=307 Identities=18% Similarity=0.239 Sum_probs=244.0
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
..++|+.|+|++++++.+.+... +.......|+++. .++||++||++++. ++++|++|+|+++
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~-----~~~~~~~~Y~~~~------~~~Lr~~ia~~~~~------~~~~I~it~G~~~ 95 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMR-----EAAAEIWKYGDPE------NHDLRHALAAHHGV------APENIMVGEGIDG 95 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHH-----HHHHHhhcCCCCc------cHHHHHHHHHHhCC------CHHHEEEcCCHHH
Confidence 45799999999988877665422 1111234588765 39999999999853 4679999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-----ccc----cCCCeEEEEcCCCCCCccc
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-----RFN----KDGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-----~l~----~~~~~~i~v~~P~NPtG~~ 245 (456)
++.+++.+++++|| .|++++|+|+.+...++..|.+++.++.|.+ .+. ..++++++++|||||||.+
T Consensus 96 ~l~~~~~~~~~~gd----~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~ 171 (369)
T PRK08153 96 LLGLIVRLYVEPGD----PVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNPMGSW 171 (369)
T ss_pred HHHHHHHHhcCCCC----EEEECCCcchHHHHHHHHcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCC
Confidence 99999999999999 9999999999999999999999988776533 221 2357899999999999999
Q ss_pred chH-----Hhhh--cCcEEEeeecCCCCCC----CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 246 RQS-----VVNR--SGGILVHDLAYYWPQY----TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 246 ~~~-----l~~~--~~~~iI~De~y~~~~~----~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
++. +++. ++++||+||+|.+..+ .++....+++|+++||||.||+||+|+||++++ +++++.+.+.+.
T Consensus 172 ~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~-~~~~~~l~~~~~ 250 (369)
T PRK08153 172 HPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGA-PGTIKAFDKVRN 250 (369)
T ss_pred CCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecC-HHHHHHHHHhhc
Confidence 984 4432 4899999999986432 222233568999999999999999999999997 899999988764
Q ss_pred hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCC
Q 012785 315 LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394 (456)
Q Consensus 315 ~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (456)
.++++++.|.++.++|+ + .+++++.++.++++++.+.+.|++.+ +... |.+++
T Consensus 251 --~~~~s~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~r~~~~~~L~~~g-~~~~-p~~~~----------- 303 (369)
T PRK08153 251 --HFGMNRIAQAAALAALK---D---------QAYLAEVVGKIAAARDRIAAIARANG-LTPL-PSATN----------- 303 (369)
T ss_pred --CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CccC-CCcCc-----------
Confidence 57899999999999996 2 46788899999999999999998765 3322 34444
Q ss_pred CceEEeecCc---cHHHHHHHHHhCCEEee-cCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 395 PAFAWLKCEQ---EIEDCESFLKGNKILTR-SGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 395 ~~f~~~~~~~---~~~~~~~~l~~~gI~v~-pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. ....+.+.|.++||.++ ||... .++++||+++ ++++++.+++.|++++
T Consensus 304 --f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~--~~~~iRis~~-~~~~~~~~~~al~~~~ 363 (369)
T PRK08153 304 --FVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAP--LDRCIRVSCG-PDEELDLFAEALPEAL 363 (369)
T ss_pred --EEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCC--CCCeEEEecC-CHHHHHHHHHHHHHHH
Confidence 89998852 35677777888999995 65422 3579999995 7889999999999876
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=320.88 Aligned_cols=297 Identities=18% Similarity=0.201 Sum_probs=234.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
..+|+|+.+++++++++.... .. ....|++.. .+||++||++++. .++++|++|+|++
T Consensus 24 ~~~i~ls~Nenp~~~~~~~~~-------~~---~~~~Yp~~~-------~~L~~~ia~~~~~-----~~~~~I~i~~Gs~ 81 (339)
T PRK06959 24 DAWLDLSTGINPHGYPVPPVP-------AD---AWRRLPEDD-------DGLAACAARYYGA-----PDAAHVLPVAGSQ 81 (339)
T ss_pred hhhceeccCCCCCCCCCCCCC-------HH---HHHhCCCch-------HHHHHHHHHHhCC-----CCcccEEECcCHH
Confidence 467999999988765521110 01 134688653 7999999999975 1347999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccCCCeEEEEcCCCCCCcccchH-----
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQS----- 248 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NPtG~~~~~----- 248 (456)
++|.++.. ++++| .|++++|+|+.|...++..|++++.++.|.+.+. ...++++++|||||||.+++.
T Consensus 82 e~i~~l~~-~~~~g-----~v~v~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~-~~~~~v~l~nPnNPTG~~~s~~~l~~ 154 (339)
T PRK06959 82 AAIRALPA-LLPRG-----RVGIAPLAYSEYAPAFARHGHRVVPLDEAADTLP-AALTHLIVVNPNNPTAERLPAARLLR 154 (339)
T ss_pred HHHHHHHH-hcCCC-----eEEEcCCCcHHHHHHHHHCCCEEEeecccchhcc-ccCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 99997765 56665 5889999999999999999999999888764443 245789999999999999983
Q ss_pred H---hhhcCcEEEeeecCCCCCC-CCCCC--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCCh
Q 012785 249 V---VNRSGGILVHDLAYYWPQY-TSITY--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 249 l---~~~~~~~iI~De~y~~~~~-~~~~~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
+ |++++.++|+||+|.+... .++.. ..+++|+++||||.||+||+|+||++++ +++++.+.+... .++++.
T Consensus 155 l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~-~~li~~l~~~~~--~~~vs~ 231 (339)
T PRK06959 155 WHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAA-PALLAALRDALG--AWTVSG 231 (339)
T ss_pred HHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEEEecC-HHHHHHHHHhcC--CCCCcH
Confidence 3 4567899999999997432 22221 2467999999999999999999999997 999999998864 677899
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
++|.++.++|+ + .++.++.++.++++|+.+.+.|++++ +.+. .++ +|+|+++
T Consensus 232 ~~q~a~~~~L~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~--~~~-------------~f~~~~~ 283 (339)
T PRK06959 232 PARHAVRAAFA---D---------AAWQAAMRERLAADGARLAALLRAHG-FAVH--ATP-------------LFSWTDD 283 (339)
T ss_pred HHHHHHHHHhC---c---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CCcc--Ccc-------------eEEEEeC
Confidence 99999999997 2 46788899999999999999999874 3332 123 3899998
Q ss_pred CccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 403 EQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 403 ~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+ +...+.+.|.++||.|++ |+. .+++||++..++++++.+++.|++++
T Consensus 284 ~-~~~~l~~~l~~~GI~vr~---~~~-~~~lRisi~~~~~e~~~l~~al~~~~ 331 (339)
T PRK06959 284 P-RAAALHAALARRGIWTRY---FAP-PPSVRFGLPADEAEWQRLEDALAECV 331 (339)
T ss_pred C-CHHHHHHHHHhCCeEEEE---CCC-CCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 6 456788889999999985 443 56999999668889999999988765
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=324.55 Aligned_cols=308 Identities=16% Similarity=0.226 Sum_probs=241.6
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
++.++|+.|+|++++++.+.+.... .+. . ...|++.. .++||++|+++++. ++++|++|+|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~-~~~-~---~~~Y~~~~------~~~Lr~aia~~~~v------~~e~I~it~Gs~ 105 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAAR-SAA-L---SGRYDLEL------EDDLRTLFAAQEGL------PADHVMAYAGSS 105 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHH-HHH-H---hcCCCCch------HHHHHHHHHHHhCc------ChhhEEEcCChH
Confidence 5679999999998877766553221 111 1 23577654 49999999998853 467999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc--CCCeEEEEcCCCCCCccc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK--DGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~--~~~~~i~v~~P~NPtG~~ 245 (456)
+++.+++.+++++|| +|++++|+|+.|...++..|.+++.++.+ .+.++. .++++++++|||||||.+
T Consensus 106 ~ai~~~~~~l~~~gd----~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~l~nP~NPTG~~ 181 (370)
T PRK09105 106 EPLNYAVLAFTSPTA----GLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAADPNAGLIYICNPNNPTGTV 181 (370)
T ss_pred HHHHHHHHHHcCCCC----EEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhcCCCCCEEEEeCCCCCCCcC
Confidence 999999999999999 99999999999999999999999877654 233332 356899999999999999
Q ss_pred chH-----Hhh--hcCcEEEeeecCCCCCCC-C---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 246 RQS-----VVN--RSGGILVHDLAYYWPQYT-S---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 246 ~~~-----l~~--~~~~~iI~De~y~~~~~~-~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
++. +++ ++++++|+||+|.+.... + +....+++++++||||.||++|+|+||++++ +++++.+...
T Consensus 182 ~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~-~~~i~~l~~~-- 258 (370)
T PRK09105 182 TPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAAR-PDLLAKLARF-- 258 (370)
T ss_pred cCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecC-HHHHHHHHhc--
Confidence 983 433 358999999999642211 1 1134578999999999999999999999996 8999988776
Q ss_pred hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCC
Q 012785 315 LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394 (456)
Q Consensus 315 ~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (456)
....++.+.|.++.+.|. + +++++..++.++++++.+.+.|++.+ +.+.++.|+
T Consensus 259 -~~~~~~~~~~~aa~~~L~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~~~------------ 312 (370)
T PRK09105 259 -GHNPLPVPAAAAGLASLR---D---------PKLVPQRRAENAAVREDTIAWLKKKG-YKCTPSQAN------------ 312 (370)
T ss_pred -CCCCcCHHHHHHHHHHHh---C---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CCcCCCCCc------------
Confidence 245588889999888886 2 56888999999999999999999874 555555554
Q ss_pred CceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 395 PAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 395 ~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.+...+.+.|.++||.+ |..|+..++++||+++ ++++++++++.|+++++
T Consensus 313 --f~~~~~~~~~~~l~~~L~~~gI~v--~~~~~~~~~~~Ris~~-~~~~~~~l~~al~~~~~ 369 (370)
T PRK09105 313 --CFMVDVKRPAKAVADAMAKQGVFI--GRSWPIWPNWVRVTVG-SEEEMAAFRSAFAKVMR 369 (370)
T ss_pred --EEEEeCCCCHHHHHHHHHHCCcEE--ecCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHhh
Confidence 456787655667777788889998 4456545789999995 67788999999988753
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=326.80 Aligned_cols=303 Identities=17% Similarity=0.192 Sum_probs=239.9
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
..++|+.+++++++++.+. .. ..+.|++... .+|+++++++++. ++++|++|+|+++
T Consensus 29 ~~~~l~~Nenp~~~~~~~~--------~~---~~~~Yp~~~~------~~l~~~~a~~~g~------~~~~I~~~~Gs~e 85 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQLT--------QQ---TLNRYPECQP------KAVIENYAAYAGV------KPEQVLVSRGADE 85 (351)
T ss_pred CceEecCCCCCCCCChhhc--------cc---ccccCCCCCh------HHHHHHHHHHhCC------CHHHEEEcCCHHH
Confidence 4599999999888775321 11 1457988774 8999999999874 5689999999999
Q ss_pred HHHHHHHHhcCCC-CCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc--CCCeEEEEcCCCCCCccc
Q 012785 175 LFQAALYALSSQD-ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK--DGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 175 al~~~~~~l~~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~--~~~~~i~v~~P~NPtG~~ 245 (456)
++.+++++++++| | +|+++.|+|+.|...++..|++++.++.+ .+.++. .++++++++|||||||.+
T Consensus 86 ~i~~~~~~~~~~g~~----~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~~~~lv~l~nPnNPTG~~ 161 (351)
T PRK01688 86 GIELLIRAFCEPGKD----AILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNLDGVKVVYVCSPNNPTGNL 161 (351)
T ss_pred HHHHHHHHhcCCCCC----EEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhccCCcEEEEeCCCCCCCCC
Confidence 9999999999887 7 99999999999999999999999877654 333332 367899999999999999
Q ss_pred chH-----Hhhh--cCcEEEeeecCCCCCCC----CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 246 RQS-----VVNR--SGGILVHDLAYYWPQYT----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 246 ~~~-----l~~~--~~~~iI~De~y~~~~~~----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
++. +++. .+.++|+||+|.+.... ......+++|+++||||.||++|+|+||++++ +++++.+.+...
T Consensus 162 ~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~-~~~i~~l~~~~~ 240 (351)
T PRK01688 162 INPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLAN-EEVINLLLKVIA 240 (351)
T ss_pred CCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCC-HHHHHHHHhccC
Confidence 983 4432 26889999999864321 11234578999999999999999999999996 999999987754
Q ss_pred hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCC
Q 012785 315 LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394 (456)
Q Consensus 315 ~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (456)
.++++.+.|.++.++|. +. ..+++++.++.++++|+.+.+.|++++++... +++.
T Consensus 241 --~~~v~~~~~~~a~~~L~---~~-------~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-------------~ps~ 295 (351)
T PRK01688 241 --PYPLSTPVADIAAQALS---PQ-------GIAAMRERVAEINANRQWLIAALKEIPCVEQV-------------FDSE 295 (351)
T ss_pred --CCCCCHHHHHHHHHHHh---cc-------hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE-------------CCCC
Confidence 67788899999888886 22 13678888889999999999999887544322 2445
Q ss_pred CceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHH
Q 012785 395 PAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452 (456)
Q Consensus 395 ~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~ 452 (456)
++|+|++++ +.+.+.+.|.++||.|+++..|...++++||++ .++++++.+++.|+
T Consensus 296 ~nfi~~~~~-~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~-~~~~e~~~l~~al~ 351 (351)
T PRK01688 296 TNYILARFT-ASSAVFKSLWDQGIILRDQNKQPGLSNCLRITI-GTREECQRVIDALR 351 (351)
T ss_pred CcEEEEEcC-CHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeC-CCHHHHHHHHHhhC
Confidence 569999986 456777888899999998876633478999999 47789999988773
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=346.71 Aligned_cols=326 Identities=14% Similarity=0.171 Sum_probs=250.0
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++|+|+.|+|++++|+.+.+... ..+... .+ ..| +++++++|++|+.. +|....++++|++|+
T Consensus 695 ~g~~vI~LsinE~d~ppPp~V~eAi~-eal~~~-----~~--s~g-----~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~ 761 (1082)
T PLN02672 695 QESSLIHMDVDESFLPVPSAVKASIF-ESFVRQ-----NI--SES-----ETDPRPSILQFIKSNYGFPTDSCTEFVYGD 761 (1082)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHH-HHHhhc-----CC--CCC-----ChHHHHHHHHHHHHHhCcCCCCCCEEEEeC
Confidence 45689999999999998876665422 111111 12 234 47899999999965 687776557999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-cc-------ccc---C-CCeEEEEcCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-KR-------FNK---D-GPYIELVTSP 238 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~~-------l~~---~-~~~~i~v~~P 238 (456)
|+++++..++++++++|| +|++++|+|+.|...++..|++++.++++. ++ ++. . +.++++++||
T Consensus 762 Gs~elL~lll~aLl~pGD----~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nP 837 (1082)
T PLN02672 762 TSLALFNKLVLCCVQEGG----TLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGP 837 (1082)
T ss_pred CHHHHHHHHHHHHcCCCC----EEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECc
Confidence 999999999999999999 999999999999999999999999887653 22 222 1 2357889999
Q ss_pred C-CCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------CC----C--C---CCCcEEEecCccccCCCCc
Q 012785 239 N-NPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------IT----Y--P---ADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 239 ~-NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~~----~--~---~~~~i~i~S~SK~~g~~G~ 293 (456)
| ||||.++++ +|++++++||+||+|.+..|.. +. . . ..++|+++||||.|++||+
T Consensus 838 nhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGL 917 (1082)
T PLN02672 838 TINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGH 917 (1082)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHH
Confidence 7 999999993 6889999999999998532211 11 0 1 2379999999999999999
Q ss_pred eEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhC-CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 294 RIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSD-SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 294 RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
|+||++++++++++.+.+... ..+.....|.++.+++....+ .. .+.+++++.++.++++++++.+.|++.+
T Consensus 918 RIGylIap~~eLi~~l~~~~~--~s~~~~~~q~Aaaaalall~~~~~-----~~~~~l~e~r~~Lk~rRd~L~e~L~~~G 990 (1082)
T PLN02672 918 EFGFLALNDSVLIDAFHSAPG--LSRPHSTLKYTIKKLLGLKNQKSS-----DLLDGVAEQKKILKSRAERLKETLEACG 990 (1082)
T ss_pred HheeEEeCCHHHHHHHHHhhh--hcCCCcHHHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999975679999987643 233344566666665543211 11 2357788899999999999999999875
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecC-------------------ccHHHHHH-HHHhCCEEeecCCCCCCCCCe
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-------------------QEIEDCES-FLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------------------~~~~~~~~-~l~~~gI~v~pg~~fg~~~~~ 432 (456)
+.+.+|+|+| |+|++++ .+...+.+ ++++.||.+.||+.||. ++|
T Consensus 991 -i~v~~PeGGF-------------fLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~-~g~ 1055 (1082)
T PLN02672 991 -WDVLEPQGGI-------------SMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI-PGY 1055 (1082)
T ss_pred -CeEecCCcEE-------------EEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC-CCe
Confidence 6788889998 8998652 12344554 55567999999998875 789
Q ss_pred EEEEecCChhHHHHHHHHHHhhhC
Q 012785 433 VRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 433 iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
+||+++.+++++++++++|+++++
T Consensus 1056 ~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1056 CRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHH
Confidence 999998888999999999998753
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=316.69 Aligned_cols=293 Identities=17% Similarity=0.219 Sum_probs=228.9
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
.+|+|+.+++++++++... . ... ...|++. ..+||++|+++++ .++|++|+|+++
T Consensus 21 ~~i~l~~ne~p~~~~~~~~---~----~~~---~~~yp~~-------~~~Lr~~ia~~~~--------~~~I~it~Gs~~ 75 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAI---P----ADA---WARLPET-------DDGLEAAARAYYG--------APQLLPVAGSQA 75 (330)
T ss_pred HheeecCCcCCCCCCCccc---C----HHH---HHhCCCC-------hHHHHHHHHHHhC--------CCCEEECcCHHH
Confidence 5799999976554332110 0 011 2357763 3899999999985 258999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcccccc--CCCeEEEEcCCCCCCcccchH----
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNK--DGPYIELVTSPNNPDGSVRQS---- 248 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~--~~~~~i~v~~P~NPtG~~~~~---- 248 (456)
+|.+++. +.+|| +|++++|+|+.|...++..|++++.++.+. ++. .++++++++|||||||.+++.
T Consensus 76 al~~~~~--~~~gd----~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~~~v~l~nP~NPTG~~~s~~~l~ 147 (330)
T PRK05664 76 AIQALPR--LRAPG----RVGVLSPCYAEHAHAWRRAGHQVRELDEAE--VEAALDSLDVLVVVNPNNPTGRRFDPARLL 147 (330)
T ss_pred HHHHHHH--ccCCC----EEEEcCCChHHHHHHHHHcCCeEEEechhh--HhhhhcCCCEEEEeCCcCCCCCccCHHHHH
Confidence 9998863 57899 999999999999999999999999988752 222 356788999999999999993
Q ss_pred ----HhhhcCcEEEeeecCCCCCC-CCCC--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCC
Q 012785 249 ----VVNRSGGILVHDLAYYWPQY-TSIT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVS 321 (456)
Q Consensus 249 ----l~~~~~~~iI~De~y~~~~~-~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s 321 (456)
+|++++++||+||+|.+... .++. ...+++|+++||||+||+||+|+||++++ +++++.+.+... .++++
T Consensus 148 ~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~-~~l~~~~~~~~~--~~~~~ 224 (330)
T PRK05664 148 AWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAE-PALLRALAELLG--PWTVS 224 (330)
T ss_pred HHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEEEEeC-HHHHHHHHHhcC--CCCCC
Confidence 46789999999999975321 2222 23468999999999999999999999997 999999988754 56788
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEee
Q 012785 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLK 401 (456)
Q Consensus 322 ~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~ 401 (456)
.+.|.++.++|. + ..+.++.++.++++++.+.+.|++.+ + .+.|+. ++|+|++
T Consensus 225 ~~~~~~~~~~L~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~~-~---~~~~~~-----------~~f~~~~ 277 (330)
T PRK05664 225 GPTRWLAQAALA---D---------TPWQRRQRERLLAASQRLAALLRRHG-L---TPAGGC-----------ALFQWVR 277 (330)
T ss_pred HHHHHHHHHHHh---C---------hHHHHHHHHHHHHHHHHHHHHHHHCC-C---cccCCc-----------ceEEEEe
Confidence 999999999987 2 34567889999999999999999874 2 233432 1389998
Q ss_pred cCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 402 CEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 402 ~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++ +.+.+.+.|+++||.|++ |+ ..+++||+++.++++++++++.|+++.
T Consensus 278 ~~-~~~~~~~~l~~~gi~v~~---f~-~~~~iRis~~~~~~~~~~l~~al~~~~ 326 (330)
T PRK05664 278 TE-DAAALHEFLARRGILTRL---FE-QPASLRFGLPADEADWARLDQALLAYR 326 (330)
T ss_pred cC-CHHHHHHHHHHCCeEEEE---CC-CCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 86 566778889999999985 55 368999999756777888888887664
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=321.32 Aligned_cols=319 Identities=17% Similarity=0.219 Sum_probs=250.7
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
+..+|+|+.+++++++++.+.+... ..+..+. ...|+++.| .++||++++++++. ++++|++|+|+
T Consensus 27 ~~~~i~l~~~~~~~~~~~~~~~a~~-~~~~~~~--~~~y~~~~g-----~~~lr~~ia~~l~~------~~~~v~~~~g~ 92 (380)
T PRK06225 27 DKEMIWMGQNTNHLGPHEEVREAMI-RCIEEGE--YCKYPPPEG-----FPELRELILKDLGL------DDDEALITAGA 92 (380)
T ss_pred cCCeEEccCCCCCCCCCHHHHHHHH-HHHhcCC--CCCCCCCcc-----hHHHHHHHHHhcCC------CCCcEEEeCCH
Confidence 4678999999998876665554322 1222221 346888888 59999999999853 45799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc---CCCeEEEEcCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~---~~~~~i~v~~P~N 240 (456)
++++.+++++++.+|| +|++++|+|..+...++..|++++.++++ .+.++. .+++++++++|||
T Consensus 93 t~al~~~~~~~~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~N 168 (380)
T PRK06225 93 TESLYLVMRAFLSPGD----NAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLN 168 (380)
T ss_pred HHHHHHHHHHhcCCCC----EEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCC
Confidence 9999999999999999 99999999999999999999998877653 233332 3678998899999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCC--CCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQ--YTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~--~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
|||.+++ ++|+++|+++|+||+|.+.. ..+.. ...++++++.||||.+|++|+|+||++++ +++++.+
T Consensus 169 ptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~-~~l~~~~ 247 (380)
T PRK06225 169 PLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVAT-PDLIEVV 247 (380)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecC-HHHHHHH
Confidence 9999987 26889999999999996421 11111 23478999999999999999999999996 8999998
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCCccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PELPSQFCTFLG 388 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~g~~~~~~~ 388 (456)
+.... ...+.+.+.|.++...|.. . ++++++.++.++++++.+.+.|+++++..+ ..+.+
T Consensus 248 ~~~~~-~~~~~~~~~~~~a~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~------- 308 (380)
T PRK06225 248 KSIVI-NDLGTNVIAQEAAIAGLKV---K--------DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSH------- 308 (380)
T ss_pred HHHHh-cccCCCHHHHHHHHHHHhc---c--------hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCC-------
Confidence 87643 4678899999999888872 2 467788888889999999999988643322 12233
Q ss_pred ccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 389 RAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++|+|++++. +...+.+.|.++||.++||..|+. +++++|++++.++|++++++++|++++
T Consensus 309 ------g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~ 374 (380)
T PRK06225 309 ------GNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVV 374 (380)
T ss_pred ------CeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHH
Confidence 3388998853 566788888899999999987753 467999999888899999999999876
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=324.31 Aligned_cols=320 Identities=22% Similarity=0.311 Sum_probs=251.1
Q ss_pred CeEEecCCCCCCC----chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEc
Q 012785 95 RIINVDHGDPTMY----EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVG 169 (456)
Q Consensus 95 ~~i~l~~g~p~~~----~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t 169 (456)
.+|||+.|+++.. .++...++.. ... ........|+++.| .++||+++|+|++ ..|....++.+|++|
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~~~~~~i~~~ 74 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAI-RGA-ATSSSFLGYPPPQG-----YPELREAIADFLGRRYGVPVDPEANILVT 74 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHH-HHH-HHHTGCTSSTCTTH-----HHHHHHHHHHHHHHHHTHHTTGGEGEEEE
T ss_pred CEEEEECCCCCCcccccchHHHHHHHH-HHh-hcccccccCCCchh-----hHHHHHHHHHHhhhccCcccccceEEEEe
Confidence 5899999999876 3222221111 100 11122357999999 5999999999997 566666543399999
Q ss_pred cCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc---C------CCe
Q 012785 170 TGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK---D------GPY 231 (456)
Q Consensus 170 ~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~---~------~~~ 231 (456)
+|+++++..++..+ ..+|+ +|++++|+|+.+...++..|.+++.+++ |.+.++. + +++
T Consensus 75 ~G~~~~~~~~~~~~~~~~~~----~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 150 (363)
T PF00155_consen 75 SGAQAALFLLLRLLKINPGD----TVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPK 150 (363)
T ss_dssp SHHHHHHHHHHHHHHSSTTS----EEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEE
T ss_pred cccccchhhhhhcccccccc----cceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccc
Confidence 99999999999999 78999 9999999999999999999999998874 3444432 1 357
Q ss_pred EEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----C-CC--CCCCCcEEEecCccccCCCCceE
Q 012785 232 IELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----S-IT--YPADHDLMLFTVSKSTGHAGTRI 295 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~-~~--~~~~~~i~i~S~SK~~g~~G~Ri 295 (456)
++++++||||||.+++. +|++++++||+||+|.+..+. + .. ....++|+++||||.||++|+|+
T Consensus 151 ~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRv 230 (363)
T PF00155_consen 151 AVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRV 230 (363)
T ss_dssp EEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTE
T ss_pred eeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccccc
Confidence 99999999999999983 589999999999999963322 1 11 33456999999999999999999
Q ss_pred EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012785 296 GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 296 G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
||++++ +++++.++....... .+.+.|.++..++..... ..+++++.++.++++++.+.+.|++. ++.
T Consensus 231 G~i~~~-~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~ 298 (363)
T PF00155_consen 231 GYIVAP-PELIERLRRFQRSGL--SSSPMQAAAAAALSDPEL--------VEKWLEELRERLRENRDLLREALEEI-GIT 298 (363)
T ss_dssp EEEEEE-HHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHT-TSE
T ss_pred ccccch-hhhhhhhhhcccccc--ccchhhHHHHHhhhcccc--------cccccccchhhHHHHHHHHHHHHHHh-hhh
Confidence 999996 999999998876433 388999999998884211 13488999999999999999999888 477
Q ss_pred ccCCCCcccccccccCCCCCceEEeecCcc-HHHHHHHHHhC-CEEeecCCCCCCCCCeEEEEec-CChhHHHHHHHHH
Q 012785 376 VPELPSQFCTFLGRAFEPQPAFAWLKCEQE-IEDCESFLKGN-KILTRSGKHFGFSPKYVRISML-DRDENYNLFVQRL 451 (456)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~l~~~-gI~v~pg~~fg~~~~~iRis~~-~~~e~i~~~l~~L 451 (456)
+..+++++ |+|+.++.. .+++.+.|.++ ||.+.||..|+. ++++||+++ .++|++++++++|
T Consensus 299 ~~~~~~~~-------------~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~-~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 299 VLPPEAGF-------------FLWVRLDPNDAEELAQELLEEYGILVRPGSYFGV-PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp EEHHSBSS-------------EEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTS-TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred eeeccCcc-------------EEEEEcccchHHHHHHHHHHhCCEEEEecCCCCC-CCEEEEEeccCCHHHHHHHHhhC
Confidence 77777887 899998753 45555555555 999999999988 899999994 4999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=321.88 Aligned_cols=315 Identities=17% Similarity=0.218 Sum_probs=245.4
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGST 173 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~ 173 (456)
..|+|+.|+|++++++.+.+..... +.........|++. | .++||++||+|+.. +|..+. +++|++|+|++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~-l~~~~~~~~~Y~~~-g-----~~~lr~aia~~~~~~~~~~~~-~~~I~it~G~~ 98 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEA-VAEAAAGLNRYPDR-D-----AVALRADLAAYLTAQTGVGLT-VENVWAANGSN 98 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHH-HhhhhhhhccCCCC-c-----hHHHHHHHHHHhhhhccCCCC-hhhEEECCCHH
Confidence 5699999999998887666542211 22111124568764 6 59999999999965 465554 57999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Cccccc----cCCCeEEEEcCCCCCCc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFN----KDGPYIELVTSPNNPDG 243 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~----~~~~~~i~v~~P~NPtG 243 (456)
+++.+++++++++|| .|+++.|+|+.|...++..|.+++.++. |.+.++ ..++++++++|||||||
T Consensus 99 ~~l~~~~~~~~~~gd----~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG 174 (368)
T PRK03317 99 EILQQLLQAFGGPGR----TALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTG 174 (368)
T ss_pred HHHHHHHHHhcCCCC----EEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCC
Confidence 999999999999999 9999999999999999999998886653 334443 23578899999999999
Q ss_pred ccchH-----HhhhcCcEEEeeecCCCCCCCCCC------CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH
Q 012785 244 SVRQS-----VVNRSGGILVHDLAYYWPQYTSIT------YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY 312 (456)
Q Consensus 244 ~~~~~-----l~~~~~~~iI~De~y~~~~~~~~~------~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~ 312 (456)
.+++. +++..++++|+||+|.+..+.+.. ...+++|+++||||.||++|+|+||++++ +++++.+...
T Consensus 175 ~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~-~~~~~~l~~~ 253 (368)
T PRK03317 175 TALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA-PAVVDALRLV 253 (368)
T ss_pred CCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC-HHHHHHHHhc
Confidence 99983 777788999999999864322211 22357999999999999999999999996 9999999876
Q ss_pred HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCC
Q 012785 313 IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392 (456)
Q Consensus 313 ~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~ 392 (456)
. .++++|+++|.++.++|+. .+.+.+.++.++++++.+.+.|++.+ +.+..+.|++
T Consensus 254 ~--~~~~~s~~~~~a~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~--------- 309 (368)
T PRK03317 254 R--LPYHLSAVTQAAARAALRH------------ADELLASVAALRAERDRVVAWLRELG-LRVAPSDANF--------- 309 (368)
T ss_pred C--CCCCCCHHHHHHHHHHhhC------------HHHHHHHHHHHHHHHHHHHHHHHHCC-CEeCCCCCcE---------
Confidence 5 3678999999999998872 22334455678899999999998875 5666666666
Q ss_pred CCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 393 PQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 393 ~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|.+++ +...+.+.|.++||.++++ +. ++++||+++ ++++++.+++.|+++++
T Consensus 310 ----~~~~~~~-~~~~~~~~l~~~Gv~v~~~---~~-~~~iRi~~~-~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 310 ----VLFGRFA-DRHAVWQGLLDRGVLIRDV---GI-PGWLRVTIG-TPEENDAFLAALAEVLA 363 (368)
T ss_pred ----EEEeccC-CHHHHHHHHHHCCEEEEeC---CC-CCeEEEecC-CHHHHHHHHHHHHHHHH
Confidence 6776664 4566778888999999873 32 689999995 67789999999988763
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=320.63 Aligned_cols=305 Identities=18% Similarity=0.250 Sum_probs=241.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
...++|+.+++++++++... .. ..+.|++.. .++||+++|++++. ++++|++|+|++
T Consensus 31 ~~~~~l~~ne~~~~~~~~~~--------~~---~~~~Yp~~~------~~~Lr~aia~~~~~------~~~~I~it~Gs~ 87 (354)
T PRK04635 31 RGDIWINANESPFNNEYKLD--------LA---RLNRYPECQ------PPELINAYSAYAGV------APEQILTSRGAD 87 (354)
T ss_pred CCcEEeeCCCCCCCCChhhh--------hH---HhccCCCCC------HHHHHHHHHHHhCc------CHHHEEEeCCHH
Confidence 45699999999988774220 11 135688875 49999999999864 568999999999
Q ss_pred HHHHHHHHHhcCCC-CCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc------cccc-CCCeEEEEcCCCCCCccc
Q 012785 174 QLFQAALYALSSQD-ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK------RFNK-DGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 174 ~al~~~~~~l~~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~------~l~~-~~~~~i~v~~P~NPtG~~ 245 (456)
++|.+++++++.+| | +|++++|+|+.|...++..|++++.++++.+ .++. .++++++++|||||||.+
T Consensus 88 ~~i~~~~~~~~~~g~d----~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~~~~~li~i~nP~NPTG~~ 163 (354)
T PRK04635 88 EAIELLIRAFCEPGQD----SIACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIEQLDGAKLVFICNPNNPTGTV 163 (354)
T ss_pred HHHHHHHHHhcCCCCC----eEEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHhccCCCEEEEeCCCCCCCcc
Confidence 99999999999988 7 9999999999999999999999988876532 2221 367899999999999999
Q ss_pred chH-----Hhhh-cCcEEEeeecCCCCCC----CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh
Q 012785 246 RQS-----VVNR-SGGILVHDLAYYWPQY----TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL 315 (456)
Q Consensus 246 ~~~-----l~~~-~~~~iI~De~y~~~~~----~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~ 315 (456)
++. +++. .+++||+||+|.+... ..+....+++|+++||||.||++|+|+||++++ +++++.+.....
T Consensus 164 ~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~-~~~~~~l~~~~~- 241 (354)
T PRK04635 164 IDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLAN-EELIEILMRVIA- 241 (354)
T ss_pred CCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCC-HHHHHHHHhhcC-
Confidence 983 5544 3699999999985321 112234578999999999999999999999996 999998876543
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCC
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQP 395 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~ 395 (456)
.++++.+.|.++.++|. +. ..+++++.++.++++|+.+.+.|++++.+.+.++ ++
T Consensus 242 -~~~~~~~~~~~a~~~l~---~~-------~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~--------------~g 296 (354)
T PRK04635 242 -PYPVPLPVSEIATQALS---EA-------GLARMKFQVLDLNAQGARLQAALSMYGGAKVLEG--------------NG 296 (354)
T ss_pred -CCCCCHHHHHHHHHHHh---cc-------cHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCC--------------CC
Confidence 57788899999888886 22 1355777888899999999999998764444333 34
Q ss_pred ceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 396 AFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 396 ~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+|+|++++ +.+.+.+.++++||.++++..++ .++++|||+ .++|+++.+++.|++..
T Consensus 297 ~f~~~~~~-~~~~~~~~l~~~gv~v~~~~~~~-~~~~lRis~-~~~e~~~~l~~al~~~~ 353 (354)
T PRK04635 297 NYVLAKFD-DVDAVFKALWDAGIVARAYKDPR-LANCIRFSF-SNRAETDKLIGLIRNQY 353 (354)
T ss_pred cEEEEECC-CHHHHHHHHHHCCEEEEECCCCC-CCCeEEEEe-CCHHHHHHHHHHHHHhc
Confidence 48999987 45667788899999999865433 367999999 57889999999998753
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=318.02 Aligned_cols=312 Identities=17% Similarity=0.238 Sum_probs=246.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.+..++||+.++|++.+++.+.+... .. .. ....|++..+ .+||+++|++++. ++++|++|+|
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~~~~a~~-~~-~~---~~~~y~~~~~------~~lr~~ia~~~~~------~~~~i~~t~G 92 (367)
T PRK02731 30 GIADIIKLASNENPLGPSPKAIEAIR-AA-AD---ELHRYPDGSG------FELKAALAEKFGV------DPERIILGNG 92 (367)
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHH-HH-HH---hhcCCCCCcH------HHHHHHHHHHhCc------CHHHEEEcCC
Confidence 45678999999887766655443321 11 11 2346887665 8999999999853 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----cccccc---CCCeEEEEcCCCCCCc
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
+++++.+++.+++++|| +|++++|+|..+...++..|++++.++.+ .+.++. .++++++++|||||||
T Consensus 93 ~~~~l~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG 168 (367)
T PRK02731 93 SDEILELLARAYLGPGD----EVIYSEHGFAVYPIAAQAVGAKPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTG 168 (367)
T ss_pred HHHHHHHHHHHhcCCCC----EEEEecCCHHHHHHHHHHcCCeEEEecccCCCCCHHHHHHHhCCCCcEEEEeCCCCCCC
Confidence 99999999999999999 99999999999999899999999877653 333332 3678999999999999
Q ss_pred ccchH-----Hhhh--cCcEEEeeecCCCCCC-----CCC--CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 244 SVRQS-----VVNR--SGGILVHDLAYYWPQY-----TSI--TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 244 ~~~~~-----l~~~--~~~~iI~De~y~~~~~-----~~~--~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
.+++. +++. +++++|+||+|.+..+ .++ ....+++|+++||||.||++|+|+||++++ +++++.+
T Consensus 169 ~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~-~~~~~~l 247 (367)
T PRK02731 169 TYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAP-PEIIDAL 247 (367)
T ss_pred cCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCC-HHHHHHH
Confidence 99983 5554 4899999999974222 111 123478999999999999999999999997 8999988
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
.+... .++.+.++|.++.++|+ + .+++++.++.++++++.+.+.|++.+ +.+. +.++.
T Consensus 248 ~~~~~--~~~~~~~~~~~a~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~~g~------ 305 (367)
T PRK02731 248 NRVRQ--PFNVNSLALAAAVAALD---D---------DAFVEKSRALNAEGMAWLTEFLAELG-LEYI-PSVGN------ 305 (367)
T ss_pred HHccC--CCCCCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CccC-CCCce------
Confidence 87754 56788999999999887 2 46788899999999999999999874 4443 22333
Q ss_pred cCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 390 AFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+.+.|.++||.++++..|+ .++++||+++ +.++++.+++.|+++++
T Consensus 306 -------~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~-~~~~iRis~~-~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 306 -------FILVDFDDGKDAAEAYQALLKRGVIVRPVAGYG-LPNALRITIG-TEEENRRFLAALKEFLA 365 (367)
T ss_pred -------EEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCC-CCCeEEEecC-CHHHHHHHHHHHHHHHh
Confidence 89999843 56778888889999999999887 3689999995 67889999999998764
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=320.47 Aligned_cols=309 Identities=17% Similarity=0.233 Sum_probs=243.8
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE-ccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV-GTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~-t~G 171 (456)
+..+|+|+.+++++.+++.+.+... ... .. ...|+++.+ ++||+++|++++. ++++|++ |+|
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~-~~~-~~---~~~y~~~~~------~~lr~~ia~~~~~------~~~~i~~~~~G 95 (361)
T PRK00950 33 PESIIKLGSNENPLGPSPKAVEAIE-KEL-SK---IHRYPEPDA------PELREALSKYTGV------PVENIIVGGDG 95 (361)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHH-HHH-Hh---hcCCCCCCH------HHHHHHHHHHhCC------CHHHEEEeCCC
Confidence 4488999999988876665543321 111 11 235777664 8999999999864 4578998 899
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---CCCeEEEEcCCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---DGPYIELVTSPNNPD 242 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~~~~~i~v~~P~NPt 242 (456)
+++++..+++++.++|| +|++++|+|+.+...++..|++++.++.+ .+.++. .+++++++++|||||
T Consensus 96 a~~~i~~~~~~~~~~gd----~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~npt 171 (361)
T PRK00950 96 MDEVIDTLMRTFIDPGD----EVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPT 171 (361)
T ss_pred HHHHHHHHHHHhcCCCC----EEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCC
Confidence 99999999999999999 99999999999999999999998876543 333332 357889999999999
Q ss_pred cccch-----HHhhhcCcEEEeeecCCCCCC---CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 243 GSVRQ-----SVVNRSGGILVHDLAYYWPQY---TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 243 G~~~~-----~l~~~~~~~iI~De~y~~~~~---~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
|.+++ ++|+++++++|+||+|.+... .++....+++++++||||.+|+||+|+||++++ +++++.+++...
T Consensus 172 G~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~-~~~~~~~~~~~~ 250 (361)
T PRK00950 172 GNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVP-EWLIDYYMRAKT 250 (361)
T ss_pred CCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCC-HHHHHHHHHhcC
Confidence 99998 378899999999999985321 122234478999999999999999999999997 899998887764
Q ss_pred hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCC
Q 012785 315 LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394 (456)
Q Consensus 315 ~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (456)
.++.+.+.|.++..+|. + .+++++.++.++++++.+.+.|+ +.+. +.++
T Consensus 251 --~~~~~~~~~~~a~~~l~---~---------~~~~~~~~~~~~~~r~~l~~~l~----~~~~-~~~~------------ 299 (361)
T PRK00950 251 --PFSLTRLSQAAAIAALS---D---------KEYIEKSIEHGIKSREYLYNELP----FKVY-PSEA------------ 299 (361)
T ss_pred --CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHhhcC----eeEC-CCcc------------
Confidence 46688999999888886 2 46788888889999988887775 2222 2333
Q ss_pred CceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 395 PAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 395 ~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
+|+|++++. +...+.+.|.++||.++||..|+. +++++||+++ ++++++++++.|+++++
T Consensus 300 -~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 300 -NFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIVE 361 (361)
T ss_pred -eEEEEECCCCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHhC
Confidence 389999853 567788888889999999999954 5789999995 67799999999999874
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=321.10 Aligned_cols=325 Identities=17% Similarity=0.152 Sum_probs=231.9
Q ss_pred CCCCeEEecCCC-CCCCchhHhhhcccc--cccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCce---
Q 012785 92 GGERIINVDHGD-PTMYEKYWQKVGDKT--TIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHH--- 165 (456)
Q Consensus 92 ~~~~~i~l~~g~-p~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~--- 165 (456)
.....++|+.|+ |+...++++.+.... ..+... .....|++..| .++||+++++|+...+....++++
T Consensus 46 ~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~-~~~~~Y~~~~G-----~~~LR~aia~~~~~~~~~~~~~~~i~~ 119 (423)
T PLN02397 46 PSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAG-SRNKEYLPIEG-----LAEFNKLSAKLAYGADSPAIKENRVAT 119 (423)
T ss_pred CCcceEecccceeeCCCCCcccchHHHHHHHHhhcc-CCCCCCCCcCC-----CHHHHHHHHHHHcCCCCchhhcCeeEe
Confidence 445679999996 665444332111110 111111 12336999999 599999999998544333222333
Q ss_pred --EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccc----cc--CC
Q 012785 166 --IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRF----NK--DG 229 (456)
Q Consensus 166 --I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l----~~--~~ 229 (456)
|+.|+|+.+ +...+..++.+|| +|++++|+|+.|...++..|++++.+++ |.+.+ +. .+
T Consensus 120 ~~i~~g~Ga~~-l~~~~~~~~~pGd----~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~ 194 (423)
T PLN02397 120 VQCLSGTGSLR-LGAEFLARFYPGS----TIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDG 194 (423)
T ss_pred eecccchHHHH-HHHHHHHHhCCCC----EEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCC
Confidence 344555544 3334444556999 9999999999999999999999987754 23322 11 34
Q ss_pred CeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-------CCC---CCCCCcEEEecCccccCCC
Q 012785 230 PYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-------SIT---YPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-------~~~---~~~~~~i~i~S~SK~~g~~ 291 (456)
++++++++||||||.++++ +|++++++||+||+|.+..+. ++. ...+++|+++||||+|+++
T Consensus 195 ~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~ 274 (423)
T PLN02397 195 SFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLY 274 (423)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCc
Confidence 6888899999999999993 678899999999999865332 111 2235799999999999999
Q ss_pred CceEEEEE--EeCHHHHH----HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWAL--VKDMEVAK----KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~--~~~~~~~~----~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|||+||++ ++++++++ .+.+.......+++.+.|.++..+|+ ++... ..+.++++.+++.+++||+.+.
T Consensus 275 G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~---~~~~~--~~~~~~~~~~~~~~~~rr~~l~ 349 (423)
T PLN02397 275 GERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILG---DPELF--SEWTKELKGMADRIISMRQKLY 349 (423)
T ss_pred cccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhC---CHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 43465544 34444444456788899999998887 22000 0012447889999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec-CCh
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML-DRD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~-~~~ 441 (456)
+.|++++ .+.+..|+|+| |+|++++ .+++.++++++||.+.+ .+ |++++ .++
T Consensus 350 ~~L~~~~~~~~~~~~~p~gg~-------------fl~~~l~--~~~~~~Ll~~~~V~v~~-------~~--Ri~~~~~~~ 405 (423)
T PLN02397 350 DALEARGSPGDWSHITKQIGM-------------FSFTGLN--KEQVDRMTKEYHIYMTR-------DG--RISMAGLSS 405 (423)
T ss_pred HHHHhcCCCCCCCcccCCceE-------------EEecCCC--HHHHHHHHHhCCEEECC-------CC--eEEEeeCCH
Confidence 9999874 26667889998 9999985 45788888999999974 22 99998 499
Q ss_pred hHHHHHHHHHHhhhC
Q 012785 442 ENYNLFVQRLSKILS 456 (456)
Q Consensus 442 e~i~~~l~~L~~~l~ 456 (456)
+++++++++|+++++
T Consensus 406 ~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 406 KNVPYLADAIHAVVT 420 (423)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999863
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=306.04 Aligned_cols=294 Identities=18% Similarity=0.214 Sum_probs=217.9
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
..++|||+.+++++++ +.+.+... .+ .+. ...|+. ...||++++++++ ++|++|+|+
T Consensus 7 ~~~~i~l~~~~np~~p-~~~~~a~~-~~-~~~---~~~yp~--------~~~l~~~ia~~~~---------~~I~vt~G~ 63 (311)
T PRK08354 7 EEGLIDFSASVNPYPP-EWLDEMFE-RA-KEI---SGRYTY--------YEWLEEEFSKLFG---------EPIVITAGI 63 (311)
T ss_pred ccceeEecCCCCCCCC-HHHHHHHH-HH-HHH---hhcCCC--------hHHHHHHHHHHHC---------CCEEECCCH
Confidence 4578999999777763 44544321 11 111 235654 2679999999884 379999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccC--CCeEEEEcCCCCCCcccchH--
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKD--GPYIELVTSPNNPDGSVRQS-- 248 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~--~~~~i~v~~P~NPtG~~~~~-- 248 (456)
++++.+++..+ .+|| +|++++|+|+.|...++..|.+++.++.|.+.++.. ++++++++|||||||.+++.
T Consensus 64 ~~al~~~~~~~-~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~~vi~~~P~NPTG~~~~~~~ 138 (311)
T PRK08354 64 TEALYLIGILA-LRDR----KVIIPRHTYGEYERVARFFAARIIKGPNDPEKLEELVERNSVVFFCNPNNPDGKFYNFKE 138 (311)
T ss_pred HHHHHHHHHhh-CCCC----eEEEeCCCcHHHHHHHHHcCCEEeecCCCHHHHHHhhcCCCEEEEecCCCCCCCccCHHH
Confidence 99999888544 4898 999999999999999999999999998888877542 56788999999999999983
Q ss_pred ------HhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCCh
Q 012785 249 ------VVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 249 ------l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
+|+++++++|+||+|.+..+.......+++|+++||||+||+||+|+||+++ +.+.+++.+. .+..+.
T Consensus 139 l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~----~~~~l~~~~~--~~~~~~ 212 (311)
T PRK08354 139 LKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG----FEEAFRSVRM--PWSIGS 212 (311)
T ss_pred HHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee----hHHHHHHcCC--CccCCH
Confidence 5788999999999998643322222367899999999999999999999998 3455655543 456677
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
..|.++..+++ +. .+++++.++.++++++.+.+.+. ..+.| +|+|+++
T Consensus 213 ~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~--------------~~~~~~~ 260 (311)
T PRK08354 213 TGYAFLEFLIE---DD--------FEHLRKTMPLIWREKERFEKALY-------VKSDA--------------NFFIKDV 260 (311)
T ss_pred HHHHHHHHHHH---hH--------HHHHHHHHHHHHHHHHHHHHhcC-------CCCCC--------------cEEEEEC
Confidence 77777777765 22 24555666666666655544431 12333 3666776
Q ss_pred CccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 403 EQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 403 ~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+ +.+.+.+.++++||.++||..|+. ++++||+++ .+++.+++++.|++++
T Consensus 261 ~-~~~~~~~~l~~~gv~v~~g~~f~~-~~~iRi~~~-~~~~~~~l~~al~~~~ 310 (311)
T PRK08354 261 G-DAEKFVEFLKRNGILVRDCTSFGL-PGYIRFSVR-DREENEKLIRALREWR 310 (311)
T ss_pred C-CHHHHHHHHHHCCeEEEecccCCC-CCeEEEEeC-CHHHHHHHHHHHHHhh
Confidence 5 345677778899999999999974 689999995 5556677777777653
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=313.29 Aligned_cols=299 Identities=17% Similarity=0.193 Sum_probs=228.1
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
.++|+|+.++|++++++.+.+... ..+... ....|++ .| .++||+++++|++. ++++|++|+|++
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~Y~~-~g-----~~~lr~~ia~~~~~------~~~~I~~t~G~~ 82 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIF-EELKRV--PFNRYPH-IT-----SDPLREAIAEFYGL------DAENIAVGNGSD 82 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHH-HHhhcC--ccccCCC-CC-----HHHHHHHHHHHhCc------CcceEEEcCCHH
Confidence 467999999998876654443321 112111 1346875 57 59999999999963 468999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------ccccc--CCCeEEEEcCCCCCCccc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------KRFNK--DGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~~--~~~~~i~v~~P~NPtG~~ 245 (456)
+++..++..+ +|| +|++++|+|+.|...++..|.+++.+++|. +.++. .++++++++|||||||.+
T Consensus 83 ~~l~~~~~~~--~gd----~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~~~~P~NPtG~~ 156 (337)
T PRK03967 83 ELISYLVKLF--EGK----HIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKAKNASAVFICSPNNPTGNL 156 (337)
T ss_pred HHHHHHHHHh--CCC----eEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhccCCCEEEEeCCCCCCCCC
Confidence 9999998876 688 999999999999999999999998876653 23332 356888899999999999
Q ss_pred chH-----HhhhcCcEEEeeecCCCCCC---CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc
Q 012785 246 RQS-----VVNRSGGILVHDLAYYWPQY---TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT 317 (456)
Q Consensus 246 ~~~-----l~~~~~~~iI~De~y~~~~~---~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~ 317 (456)
++. ++ ++++++|+||+|.+... .+.....+++|+++||||.||+||+|+||++++ +++++++.+... .
T Consensus 157 ~~~~~l~~i~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~-~~~i~~~~~~~~--~ 232 (337)
T PRK03967 157 QPEEEILKVL-ETGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIAN-EEIIDALYRIKP--P 232 (337)
T ss_pred CCHHHHHHHH-hcCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecC-HHHHHHHHhhcC--C
Confidence 984 55 47999999999985322 122234578999999999999999999999996 999999988764 5
Q ss_pred CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCce
Q 012785 318 IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF 397 (456)
Q Consensus 318 ~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f 397 (456)
++++.++|.++..+|+ + .+++.+.++.+.++|+.+.+.|.+. ..+.+++ |
T Consensus 233 ~~~~~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~r~~l~~~L~~~-----~~~~~~~-------------~ 282 (337)
T PRK03967 233 FSLNILTMKIVRLALD---H---------YDLIEERIDYIIKERERVRRELGEY-----AYPSDAN-------------F 282 (337)
T ss_pred CCCCHHHHHHHHHHHh---C---------HHHHHHHHHHHHHHHHHHHHHhccC-----cCCCCCc-------------E
Confidence 6789999999999887 2 2355555666677788888888753 1234444 9
Q ss_pred EEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 398 AWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+|++++ +.+.|.++||.|+++.. ..++++||+++ ++++.+++++.|+++.
T Consensus 283 ~~~~~~-----~~~~l~~~gi~v~~~~~--~~~~~~Ri~~~-~~~~~~~l~~~l~~~~ 332 (337)
T PRK03967 283 LLLKLD-----AYDYLLENGIVVRKLSG--RLEGHIRVTVG-KREENDEFIKALKEIK 332 (337)
T ss_pred EEEhHH-----HHHHHHHCCEEEEeCCC--CCCCeEEEecC-CHHHHHHHHHHHHHHH
Confidence 999873 66777789999998653 24679999995 5566777887777664
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=320.06 Aligned_cols=257 Identities=15% Similarity=0.149 Sum_probs=202.0
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHh-cCccCCCceEEEccCHHHHHHHHHHHhc-CCCCCCCcEEEEeCCCCCChh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVV-GNAITENHHIVVGTGSTQLFQAALYALS-SQDASEPISVVSAAPYYSSYP 205 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~-g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~P~y~~~~ 205 (456)
...|++..| .++||++||+|+.+. |.... +++|++|+|+++++..++++++ ++|| +|++++|+|+.|.
T Consensus 100 ~~~Y~~~~G-----~~~LR~aia~~~~~~~g~~~~-~~~I~it~Ga~~al~~~~~~l~~~pGd----~Vli~~P~Y~~y~ 169 (407)
T PLN02368 100 LGAYSDSRG-----LPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQILNAVIRGEKD----GVLVPVPQYPLYS 169 (407)
T ss_pred CCCCCCCCC-----CHHHHHHHHHHHHHhcCCCCC-hhhEEEcccHHHHHHHHHHHHcCCCCC----EEEEeCCCCccHH
Confidence 457999999 599999999999654 66664 5799999999999999999987 6999 9999999999999
Q ss_pred hhhhhcCCeEeeeccCc--------ccccc---C------CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEee
Q 012785 206 SITDCVKSRLYKWAGDA--------KRFNK---D------GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHD 260 (456)
Q Consensus 206 ~~~~~~g~~~~~~~~d~--------~~l~~---~------~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~D 260 (456)
..++..|.+++.++++. +.++. . ++++++++|||||||.++++ +|++++++||+|
T Consensus 170 ~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~D 249 (407)
T PLN02368 170 ATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGD 249 (407)
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999998776543 33322 1 57889999999999999993 688999999999
Q ss_pred ecCCCCCC------CCCC----C------CCCCcEEEecCcccc-CCCCceEEEEEE--eCHHHHHHHHHHHhhccCcCC
Q 012785 261 LAYYWPQY------TSIT----Y------PADHDLMLFTVSKST-GHAGTRIGWALV--KDMEVAKKMTKYIELNTIGVS 321 (456)
Q Consensus 261 e~y~~~~~------~~~~----~------~~~~~i~i~S~SK~~-g~~G~RiG~l~~--~~~~~~~~l~~~~~~~~~~~s 321 (456)
|+|.+..| .++. . ..+++|+++||||+| |+||+|+||+++ .++++++.+.+... ..++++
T Consensus 250 E~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~-~~~~~~ 328 (407)
T PLN02368 250 EVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS-IALSPN 328 (407)
T ss_pred ccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc-ccCCCC
Confidence 99986332 1211 0 134899999999998 899999999995 13889999988753 467899
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEee
Q 012785 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLK 401 (456)
Q Consensus 322 ~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~ 401 (456)
.++|.++.++|+....+... ...+.++++.+++.+++||+.+.+.|++++++.+..|+|+| |+|++
T Consensus 329 ~~~Q~aa~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gaf-------------y~~~~ 394 (407)
T PLN02368 329 VSGQIFMGLMVNPPKPGDIS-YDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAM-------------YSFPQ 394 (407)
T ss_pred cHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeee-------------EeccC
Confidence 99999999999721101000 00012333557899999999999999998778899999999 99987
Q ss_pred cCccHHHH
Q 012785 402 CEQEIEDC 409 (456)
Q Consensus 402 ~~~~~~~~ 409 (456)
++-..+.+
T Consensus 395 i~lp~~~~ 402 (407)
T PLN02368 395 IKLPPKAI 402 (407)
T ss_pred CCCCHHHH
Confidence 75444433
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=315.07 Aligned_cols=292 Identities=16% Similarity=0.164 Sum_probs=224.0
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHhcCccC--CCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAIT--ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP 205 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~--~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~ 205 (456)
...|+++.| .++||+++++++...+.... +.++|++|+|+++++.+++.+++++|| +|++++|+|+.|.
T Consensus 37 ~~~Y~~~~G-----~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd----~Vlv~~P~y~~~~ 107 (388)
T PRK08637 37 IFPYAPPQG-----IPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGD----TVLLPDHNWGNYK 107 (388)
T ss_pred ccCCCCCCC-----CHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCC----EEEEcCCCCccHH
Confidence 457999999 59999999999854443332 236899999999999999999999999 9999999999999
Q ss_pred hhhh-hcCCeEeeecc--Cc-----ccccc-------CCCeEEEEcCCCCCCcccchH--------Hhhh-----cCcEE
Q 012785 206 SITD-CVKSRLYKWAG--DA-----KRFNK-------DGPYIELVTSPNNPDGSVRQS--------VVNR-----SGGIL 257 (456)
Q Consensus 206 ~~~~-~~g~~~~~~~~--d~-----~~l~~-------~~~~~i~v~~P~NPtG~~~~~--------l~~~-----~~~~i 257 (456)
..+. ..|++++.+++ +. +.++. ...++++++|||||||.+++. +|++ ++++|
T Consensus 108 ~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~i 187 (388)
T PRK08637 108 LTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVA 187 (388)
T ss_pred HHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 8764 68999988776 32 22221 234567889999999999993 4443 89999
Q ss_pred EeeecCCCCCCC-----CC----CCCCCCcE--EEecCccccCCCCceEEEEEEeC-----HHHHHHHHHHH----hhcc
Q 012785 258 VHDLAYYWPQYT-----SI----TYPADHDL--MLFTVSKSTGHAGTRIGWALVKD-----MEVAKKMTKYI----ELNT 317 (456)
Q Consensus 258 I~De~y~~~~~~-----~~----~~~~~~~i--~i~S~SK~~g~~G~RiG~l~~~~-----~~~~~~l~~~~----~~~~ 317 (456)
|+||+|.+..+. ++ ....++++ +++||||.+++||+|+||+++++ +++++.+.+.. ....
T Consensus 188 I~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (388)
T PRK08637 188 VVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNI 267 (388)
T ss_pred EecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhccc
Confidence 999999864332 11 12335754 45699999999999999999753 67887776532 1234
Q ss_pred CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCC
Q 012785 318 IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQ 394 (456)
Q Consensus 318 ~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~ 394 (456)
.++|.+.|.++..+|+ ++ .+.+++++.+..++++++.+.+.|++.+ .+.+.+|+||+
T Consensus 268 ~~~s~~~q~a~~~~l~---~~------~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~----------- 327 (388)
T PRK08637 268 SNGPHPSQSAVLRALN---SP------EFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGY----------- 327 (388)
T ss_pred CCCCcHHHHHHHHHhC---CH------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceE-----------
Confidence 5789999999999997 33 2356777888889999999999997752 46666777777
Q ss_pred CceEEeecCc-cHHHHHHHH-HhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 395 PAFAWLKCEQ-EIEDCESFL-KGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 395 ~~f~~~~~~~-~~~~~~~~l-~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +.+.+.+.+ +++||.+.+. +++++||+++. +++++++++++|++++
T Consensus 328 --~~~~~l~~~~~~~l~~~l~~~~gv~~~~~-----~~~~iRi~~~~~~~~~i~~~~~~l~~~~ 384 (388)
T PRK08637 328 --FMCLKLKGVDAEELRVHLLEKYGIGTIAL-----NETDLRIAFSCVEEEDIPELFDSIYKAI 384 (388)
T ss_pred --EEEecCChHHHHHHHHHHhhhcceEEEec-----cCCceEEEeecCCHHHHHHHHHHHHHHH
Confidence 99999974 344555555 6789998752 36789999987 8899999999999876
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=309.57 Aligned_cols=301 Identities=17% Similarity=0.231 Sum_probs=239.3
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++++++|+.|.|+++.| ... .......+|+++.| ++||++++++++. ++++|++|+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~y~~~~~------~~lr~~la~~~~~------~~~~i~~t~G 72 (330)
T TIGR01140 15 PPEDWLDFSTGINPLGPP--VPP--------IPASAWARYPDPEY------DELRAAAAAYYGL------PAASVLPVNG 72 (330)
T ss_pred ChhheeEccccCCCCCCC--hhh--------cchHHHhhCCCccH------HHHHHHHHHHhCC------ChhhEEECCC
Confidence 345689999999887765 111 11122456888776 9999999999863 4679999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccC--CCeEEEEcCCCCCCcccchH-
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKD--GPYIELVTSPNNPDGSVRQS- 248 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~--~~~~i~v~~P~NPtG~~~~~- 248 (456)
+++++.++..++ .+| +|++++|+|..+...++..|.+++.++ |.+.++.. +++++++++||||||.+++.
T Consensus 73 ~~~~i~~~~~~l-~~g-----~vl~~~p~y~~~~~~~~~~g~~~~~~~-d~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~ 145 (330)
T TIGR01140 73 AQEAIYLLPRLL-APG-----RVLVLAPTYSEYARAWRAAGHEVVELP-DLDRLPAALEELDVLVLCNPNNPTGRLIPPE 145 (330)
T ss_pred HHHHHHHHHHHh-CCC-----eEEEeCCCcHHHHHHHHHcCCEEEEeC-CHHHHHhhcccCCEEEEeCCCCCCCCCCCHH
Confidence 999999987664 554 699999999999999999999999988 87766542 56789999999999999982
Q ss_pred -------HhhhcCcEEEeeecCCCCCCC-CCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc
Q 012785 249 -------VVNRSGGILVHDLAYYWPQYT-SIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT 317 (456)
Q Consensus 249 -------l~~~~~~~iI~De~y~~~~~~-~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~ 317 (456)
+|+++|++||+||+|.+..+. ++. ...+++|+++||||.+|+||+|+||++++ +++++++..... .
T Consensus 146 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~-~~~~~~l~~~~~--~ 222 (330)
T TIGR01140 146 TLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAH-PALLARLREALG--P 222 (330)
T ss_pred HHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCC-HHHHHHHHhcCC--C
Confidence 678899999999999853322 221 23578999999999999999999999996 889999887764 5
Q ss_pred CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCce
Q 012785 318 IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF 397 (456)
Q Consensus 318 ~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f 397 (456)
++++.++|.++..+++ + .++.++.+++++++++.+.+.|++++.+.+. +.+++ |
T Consensus 223 ~~~s~~~q~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~-------------f 276 (330)
T TIGR01140 223 WTVNGPARAAGRAALA---D---------TAWQAATRARLAAERARLAALLARLGGLEVV-GGTAL-------------F 276 (330)
T ss_pred CCchHHHHHHHHHHHh---c---------hHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCe-------------E
Confidence 6788999999999987 2 3567788999999999999999988654443 33444 8
Q ss_pred EEeecCccHHHHHHHHHhCCEEeecCCCCC-CCCCeEEEEecCChhHHHHHHHHHH
Q 012785 398 AWLKCEQEIEDCESFLKGNKILTRSGKHFG-FSPKYVRISMLDRDENYNLFVQRLS 452 (456)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg-~~~~~iRis~~~~~e~i~~~l~~L~ 452 (456)
+|++++. ..++.+.|.++||.++||..|+ .+.+++||+++.+.++ +.++++|+
T Consensus 277 ~~~~~~~-~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l~ 330 (330)
T TIGR01140 277 LLVRTPD-AAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEALA 330 (330)
T ss_pred EEEEcCC-HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhhC
Confidence 9999874 4567778888999999999995 4568999999765555 77777663
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=308.72 Aligned_cols=309 Identities=22% Similarity=0.298 Sum_probs=244.9
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
++++|||+.|+|+++.++.+.+..... . .. ...|+++.| ++||+++|++++. ++++|++|+|+
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~-~-~~---~~~y~~~~~------~~lr~~ia~~~~~------~~~~i~~~~G~ 80 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAE-A-DK---LHRYPDPDP------AELKQALADYYGV------DPEQILLGNGS 80 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHh-H-HH---hhcCCCCCH------HHHHHHHHHHhCc------ChHHEEEcCCH
Confidence 357999999998887776555432211 1 11 245887776 8999999999973 45799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------ccccc---CCCeEEEEcCCCCCCc
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------KRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~~---~~~~~i~v~~P~NPtG 243 (456)
++++..++.++..+|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++||||||
T Consensus 81 ~~~l~~~~~~l~~~gd----~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG 156 (346)
T TIGR01141 81 DEIIELLIRAFLEPGD----AVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTG 156 (346)
T ss_pred HHHHHHHHHHhcCCCC----EEEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCC
Confidence 9999999999999999 999999999999989999999998876543 33332 3678999999999999
Q ss_pred ccchH-----Hhhhc--CcEEEeeecCCCCCCC----CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH
Q 012785 244 SVRQS-----VVNRS--GGILVHDLAYYWPQYT----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY 312 (456)
Q Consensus 244 ~~~~~-----l~~~~--~~~iI~De~y~~~~~~----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~ 312 (456)
.+++. +++.. ++++|+||+|.+.... +.....+++++++||||.+|++|+|+||++++ ++++++++..
T Consensus 157 ~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~ 235 (346)
T TIGR01141 157 NLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIAN-AEIIDALNKV 235 (346)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecC-HHHHHHHHhc
Confidence 99983 56554 9999999999853221 11123457899999999999899999999996 9999998876
Q ss_pred HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCC
Q 012785 313 IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392 (456)
Q Consensus 313 ~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~ 392 (456)
.. .++.++++|.++.++++ + ..++++.++.++++++.+.+.|++++++.+. +.++.
T Consensus 236 ~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~--------- 291 (346)
T TIGR01141 236 RA--PFNLSRLAQAAAIAALR---D---------DDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDAN--------- 291 (346)
T ss_pred cC--CCCCCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCC---------
Confidence 54 57789999999988886 2 2468889999999999999999987555543 22333
Q ss_pred CCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHH
Q 012785 393 PQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452 (456)
Q Consensus 393 ~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~ 452 (456)
|+|++++.+.+.+.+.|.++||.+.||..|+..++++|+|++ ++++++++++.|+
T Consensus 292 ----~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 292 ----FVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred ----EEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHhC
Confidence 899998755667788888999999999998544889999985 7889999988764
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=304.43 Aligned_cols=306 Identities=20% Similarity=0.277 Sum_probs=236.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+++|+|+.++|++.+++.+.+... ..+ . ...+|++ .| .++||+++|++++. ++++|++|+|++
T Consensus 22 ~~~i~l~~~~~~~~~~~~~~~a~~-~~~-~---~~~~y~~-~g-----~~~lr~~ia~~~~~------~~~~I~~~~G~~ 84 (352)
T PRK03321 22 PGAIKLSSNETPFGPLPSVRAAIA-RAA-A---GVNRYPD-MG-----AVELRAALAEHLGV------PPEHVAVGCGSV 84 (352)
T ss_pred ccceeccCCCCCCCCCHHHHHHHH-HHH-H---hcCcCCC-Cc-----HHHHHHHHHHHhCc------CHHHEEECCCHH
Confidence 368999999999866655554322 111 1 2346765 57 59999999999963 467999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------ccccc---CCCeEEEEcCCCCCCcc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------KRFNK---DGPYIELVTSPNNPDGS 244 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~~---~~~~~i~v~~P~NPtG~ 244 (456)
+++..++.++.++|| +|+++.|+|..|...++..|.+++.++.|. +.++. .+++++++++||||||.
T Consensus 85 ~~l~~~~~~~~~~gd----~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~ 160 (352)
T PRK03321 85 ALCQQLVQATAGPGD----EVIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGT 160 (352)
T ss_pred HHHHHHHHHhcCCCC----EEEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCC
Confidence 999999999999999 999999999999999999999998877652 22222 36789999999999999
Q ss_pred cchH-----Hhhh--cCcEEEeeecCCCCCCC-----CCC--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHH
Q 012785 245 VRQS-----VVNR--SGGILVHDLAYYWPQYT-----SIT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT 310 (456)
Q Consensus 245 ~~~~-----l~~~--~~~~iI~De~y~~~~~~-----~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~ 310 (456)
+++. +|+. +++++|+||+|.+..+. ++. ...+++++++||||.||+||+|+||++++ +++++.+.
T Consensus 161 ~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~ 239 (352)
T PRK03321 161 VVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGH-PEVIAALR 239 (352)
T ss_pred CcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCC-HHHHHHHH
Confidence 9983 6655 69999999999753221 111 23468999999999999999999999997 99999998
Q ss_pred HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccccc
Q 012785 311 KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 311 ~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~ 390 (456)
+.. ..+++|.++|.++.+.|. .. +++.+. .+.+.++++.+.+.|++.+ +.+.+ .+|+
T Consensus 240 ~~~--~~~~~s~~~q~~a~~~l~---~~--------~~~~~~-~~~~~~~r~~~~~~L~~~~-~~~~~-~~g~------- 296 (352)
T PRK03321 240 KVA--VPFSVNSLAQAAAIASLA---AE--------DELLER-VDAVVAERDRVRAALRAAG-WTVPP-SQAN------- 296 (352)
T ss_pred Hhc--CCCCCCHHHHHHHHHHhc---CH--------HHHHHH-HHHHHHHHHHHHHHHHHCC-CccCC-CCCC-------
Confidence 764 478899999999888886 21 344444 4445566678889998764 44332 2334
Q ss_pred CCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 391 FEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.+...+.+.|+++||.+++ |+ .+++||++ .++++++.++++|+++++
T Consensus 297 ------~i~i~l~~~~~~~~~~l~~~gI~v~~---~~--~~~iRi~~-~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 297 ------FVWLPLGERTADFAAAAAEAGVVVRP---FA--GEGVRVTI-GAPEENDAFLRAARAWRA 350 (352)
T ss_pred ------EEEEeCCCCHHHHHHHHHHCCEEEEc---cC--CCcEEEee-CCHHHHHHHHHHHHHHhc
Confidence 89999865567788888999999997 53 45699998 677899999999998763
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=283.95 Aligned_cols=332 Identities=18% Similarity=0.294 Sum_probs=257.6
Q ss_pred CCCCeEEecCCCCCCCc---hhHhhhccccccc----ccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCcc-CC
Q 012785 92 GGERIINVDHGDPTMYE---KYWQKVGDKTTIV----IPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAI-TE 162 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~---~~~~~~~~~~~~~----~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~-~~ 162 (456)
++.++|.||..++.... ..|+.+...+... .........|.+-.|+ +++|+++|+++.. .|+.+ -+
T Consensus 71 Np~GiIQmGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~la~fqdy~Gl-----~~frqa~A~Fm~~~r~~~v~fd 145 (471)
T KOG0256|consen 71 NPLGIIQMGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDELAMFQDYHGL-----PSFRQAVAEFMERARGNRVKFD 145 (471)
T ss_pred CchHHHHhhhhhhHHHHHHHHHHHHhChhhhhcccccccchhhHhhcccccCc-----hHHHHHHHHHHHHHhCCCCccC
Confidence 45578999998876422 2354431111111 1122234568888995 9999999999954 44443 35
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh-cCCeEeeecc--------Ccccccc------
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC-VKSRLYKWAG--------DAKRFNK------ 227 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~-~g~~~~~~~~--------d~~~l~~------ 227 (456)
|+++++++|++.+++.+.-.|++||| ..+++.|+|+++..-++. .|.+++++.. +.++++.
T Consensus 146 P~~~Vv~~G~T~ane~l~fcLadpgd----afLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~ 221 (471)
T KOG0256|consen 146 PERVVVTNGATSANETLMFCLADPGD----AFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQAR 221 (471)
T ss_pred ccceEEecccchhhHHHHHHhcCCCc----eeeecCCCCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHH
Confidence 78999999999999999999999999 999999999999877766 4788886554 3444432
Q ss_pred ---CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCC-----CCCCCCC-------CCCCCcEEEecC
Q 012785 228 ---DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYW-----PQYTSIT-------YPADHDLMLFTV 284 (456)
Q Consensus 228 ---~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~-----~~~~~~~-------~~~~~~i~i~S~ 284 (456)
.+.+.++++||+||.|.++++ ++.++++++|+||+|.+ ..|.++. ..++++.++.|+
T Consensus 222 ~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivysl 301 (471)
T KOG0256|consen 222 KLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSL 301 (471)
T ss_pred HhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEe
Confidence 267899999999999999984 67889999999999985 3344432 146789999999
Q ss_pred ccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 285 SKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
||.||+||+|+|.+...++.++...++... ...+|+..|+.++.+|.. .. -.+.++.+.+.+++.+.+++
T Consensus 302 SKD~GlpGfRvGviYS~ne~VvsaA~kmss--f~~vSs~tQ~~la~LLSD---~~-----f~~~yl~en~~Rl~~rh~~~ 371 (471)
T KOG0256|consen 302 SKDFGLPGFRVGVIYSNNEDVVSAATKMSS--FGLVSSQTQYLLASLLSD---EE-----FTREYLRENNKRLRIRHRYI 371 (471)
T ss_pred ccccCCCceEEEEEEecChHHHHHHHHHhh--ccCCcHHHHHHHHHHhch---HH-----HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998999988888765 677899999999999983 21 14678889999999999999
Q ss_pred HHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHH-HHHhCCEEeecCCCCC-CCCCeEE
Q 012785 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCES-FLKGNKILTRSGKHFG-FSPKYVR 434 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~-~l~~~gI~v~pg~~fg-~~~~~iR 434 (456)
.+.|++++ +.+.+..+|+ |+|+++.. ..-.+++ .+.+-++.+.||+.|. ..++|+|
T Consensus 372 ~~gLk~lg-I~cl~s~AGl-------------F~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFR 437 (471)
T KOG0256|consen 372 VEGLKALG-IPCLKSNAGL-------------FCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFR 437 (471)
T ss_pred HhhHHhcC-CceeecCCee-------------EEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEE
Confidence 99999987 6777777777 99999852 1223444 4455599999999994 5799999
Q ss_pred EEecC-ChhHHHHHHHHHHhhhC
Q 012785 435 ISMLD-RDENYNLFVQRLSKILS 456 (456)
Q Consensus 435 is~~~-~~e~i~~~l~~L~~~l~ 456 (456)
++|+. .++.++.+++||+++++
T Consensus 438 vcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 438 VCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred EEeccCCHHHHHHHHHHHHHHHH
Confidence 99998 55566669999998863
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=283.01 Aligned_cols=298 Identities=17% Similarity=0.199 Sum_probs=247.2
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS 206 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~ 206 (456)
..+|++..|+ ++|...|.++.+ ....+...+.+|++|+|.+++++.+++.+++.|| .|+++.++|+....
T Consensus 93 alQYg~s~G~-----peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd----~vlie~~ty~~AL~ 163 (472)
T KOG0634|consen 93 ALQYGQSSGI-----PELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGD----HVLIEEYTYPSALQ 163 (472)
T ss_pred hhccccccCc-----HHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCC----ceEEecccchHHHH
Confidence 3579999995 999999999765 4555555556899999999999999999999999 99999999999999
Q ss_pred hhhhcCCeEeeeccCcccccc-----------------CCCeEE-EEcCCCCCCcccch--------HHhhhcCcEEEee
Q 012785 207 ITDCVKSRLYKWAGDAKRFNK-----------------DGPYIE-LVTSPNNPDGSVRQ--------SVVNRSGGILVHD 260 (456)
Q Consensus 207 ~~~~~g~~~~~~~~d~~~l~~-----------------~~~~~i-~v~~P~NPtG~~~~--------~l~~~~~~~iI~D 260 (456)
..+..|++++++++|.+++.+ .+++++ -+++-|||||..++ +||++|+++||+|
T Consensus 164 s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeD 243 (472)
T KOG0634|consen 164 SMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVED 243 (472)
T ss_pred hccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEec
Confidence 999999999999998877632 134444 35566999999998 2899999999999
Q ss_pred ecCCCCCC--------------C----------CCC--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 261 LAYYWPQY--------------T----------SIT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 261 e~y~~~~~--------------~----------~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
|+|+...+ . .+. +..+|||.+.||||.++ ||+|+||+.++ +.+++++.....
T Consensus 244 dpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~-~~~l~ril~~ae 321 (472)
T KOG0634|consen 244 DPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGN-SLFLKRILDLAE 321 (472)
T ss_pred CccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecC-HHHHHHHhhhcc
Confidence 99983111 0 011 34578999999999998 99999999996 889999988888
Q ss_pred hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C-C-ccccCCCCcccccccccC
Q 012785 315 LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G-L-FSVPELPSQFCTFLGRAF 391 (456)
Q Consensus 315 ~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~-~-~~~~~~~g~~~~~~~~~~ 391 (456)
..+.++|.++|.++-++|+..... .+-+|+.+++..|..||..+..+|.+. + . .++.+|.+||
T Consensus 322 ~~t~~pSg~sq~iv~a~l~~wgqe------G~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGm-------- 387 (472)
T KOG0634|consen 322 VATSGPSGFSQGIVYAMLKRWGQE------GFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGM-------- 387 (472)
T ss_pred eeecCcccccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcce--------
Confidence 889999999999999999864332 135899999999999999999999875 3 2 6778888888
Q ss_pred CCCCceEEeecC-------cc----HHHHHHHHHhCCEEeecCCCCCC-----CCC-eEEEEecC-ChhHHHHHHHHHHh
Q 012785 392 EPQPAFAWLKCE-------QE----IEDCESFLKGNKILTRSGKHFGF-----SPK-YVRISMLD-RDENYNLFVQRLSK 453 (456)
Q Consensus 392 ~~~~~f~~~~~~-------~~----~~~~~~~l~~~gI~v~pg~~fg~-----~~~-~iRis~~~-~~e~i~~~l~~L~~ 453 (456)
|+|++++ .+ .+.+...+.++||.+.+|..|.. ... ++|++++. +.|+++++++|+..
T Consensus 388 -----Fiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~ 462 (472)
T KOG0634|consen 388 -----FIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGS 462 (472)
T ss_pred -----EEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHH
Confidence 9999996 32 34566788899999999999942 133 99999987 89999999999988
Q ss_pred hh
Q 012785 454 IL 455 (456)
Q Consensus 454 ~l 455 (456)
++
T Consensus 463 ~i 464 (472)
T KOG0634|consen 463 VI 464 (472)
T ss_pred HH
Confidence 76
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=244.26 Aligned_cols=333 Identities=17% Similarity=0.219 Sum_probs=248.5
Q ss_pred cCCCCeEEecCCCCCCCch--hHhhhcccccccccC--ccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCce
Q 012785 91 DGGERIINVDHGDPTMYEK--YWQKVGDKTTIVIPG--WQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHH 165 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~--~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~ 165 (456)
...+..|.|+-|+|...+. ...+.. .+..+.++ .+.+..|..++| ...|.+++++.++ .+|...+ +++
T Consensus 27 Lrt~g~imLggGNPa~iPem~~~f~~~-~aemla~~~~~e~~cnY~~pQG-----~~~li~ala~~l~~~ygwnit-~~N 99 (417)
T COG3977 27 LRTPGAIMLGGGNPARIPEMDDYFQDL-LAEMLASGKATEALCNYDGPQG-----KAVLIDALAKMLRREYGWNIT-AQN 99 (417)
T ss_pred ccCCCceeeCCCCcccChhHHHHHHHH-HHHHHhcchHHHHHhcCCCCcc-----hhHHHHHHHHHHHHHhCCCCc-cce
Confidence 3445689999999975532 111111 11112222 233567998999 6999999999995 5899987 579
Q ss_pred EEEccCHHHHHHHHHHHhcCC-CCCCCcEEEEe-CCCCCChhhhhhhcC-------------CeEeeeccCcccccc-CC
Q 012785 166 IVVGTGSTQLFQAALYALSSQ-DASEPISVVSA-APYYSSYPSITDCVK-------------SRLYKWAGDAKRFNK-DG 229 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~-gd~~~~~Vlv~-~P~y~~~~~~~~~~g-------------~~~~~~~~d~~~l~~-~~ 229 (456)
|.+|+|++.+++-++..+... .|.+.++|+++ .|.|-+|..+.-.-. ...+.+..|++.+.. ++
T Consensus 100 IalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i~e~ 179 (417)
T COG3977 100 IALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHIGES 179 (417)
T ss_pred eeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccceeeccCHHHcccccc
Confidence 999999999999999887432 12223367776 799988876532211 111245567776654 36
Q ss_pred CeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCCC-----C-CCCCCcEEEecCccccCCCCceE
Q 012785 230 PYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTSI-----T-YPADHDLMLFTVSKSTGHAGTRI 295 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~~-----~-~~~~~~i~i~S~SK~~g~~G~Ri 295 (456)
+.+|+++.|.||||.++++ +++.+|+++|+|.+|.-| |+.+ . ...+|.|.|.|+|| +|+||.|+
T Consensus 180 ~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd~~~~w~~NiilC~SLSK-~GLPG~R~ 257 (417)
T COG3977 180 TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSDATPLWNENIILCMSLSK-LGLPGSRC 257 (417)
T ss_pred cceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceecccccccCCCCEEEEeehhh-cCCCCcce
Confidence 7899999999999999984 788999999999999853 2221 1 34589999999999 69999999
Q ss_pred EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH-HHHHHHHHHHHHHHHHHHHhc---
Q 012785 296 GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF-EFTNHQMSTRWKQLRMAVQKS--- 371 (456)
Q Consensus 296 G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~~L~~~--- 371 (456)
|-+++. +++++.+.+........++.+.+++++.+++ .+.. .+.- +-.+..|+++.+...+.|++.
T Consensus 258 GIiIan-e~viqaitnmn~iisLap~~~G~Aia~~mie---~gdl------~rlseqVIrPFY~~~~q~~~~~l~~~lp~ 327 (417)
T COG3977 258 GIIIAN-EKVIQAITNMNGIISLAPGRMGPAIAAEMIE---SGDL------LRLSEQVIRPFYRNRVQTTIAILRRYLPE 327 (417)
T ss_pred eEEEcc-HHHHHHHHhccceeeecCCCccHHHHHHHhh---cchH------HHHHHHhhhHHHHHHHHHHHHHHHHhcCc
Confidence 999995 9999999999888889999999999999998 4421 2222 234566777777777777653
Q ss_pred CCccccCCCCcccccccccCCCCCceEEee---cCccHHHHHHHHHhCCEEeecCCCCCC--------CCCeEEEEecCC
Q 012785 372 GLFSVPELPSQFCTFLGRAFEPQPAFAWLK---CEQEIEDCESFLKGNKILTRSGKHFGF--------SPKYVRISMLDR 440 (456)
Q Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~---~~~~~~~~~~~l~~~gI~v~pg~~fg~--------~~~~iRis~~~~ 440 (456)
..+.+.+|+|.. |+|+= +|-+.+.+++.|++.||++.||+.|.. ...++|+++..+
T Consensus 328 ~~~~iHkpEGAI-------------FlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~ 394 (417)
T COG3977 328 YRCLIHKPEGAI-------------FLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPE 394 (417)
T ss_pred cceeeecCCcce-------------eehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCC
Confidence 246788888887 65553 466889999999999999999999943 245899999889
Q ss_pred hhHHHHHHHHHHhhh
Q 012785 441 DENYNLFVQRLSKIL 455 (456)
Q Consensus 441 ~e~i~~~l~~L~~~l 455 (456)
++.+++++.+|.+.+
T Consensus 395 ~~~ie~Gva~lae~v 409 (417)
T COG3977 395 PEKIEKGVAILAEEV 409 (417)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=254.53 Aligned_cols=321 Identities=22% Similarity=0.302 Sum_probs=251.7
Q ss_pred EEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHH
Q 012785 97 INVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLF 176 (456)
Q Consensus 97 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al 176 (456)
|||+.|++++.+++........ .........|++..| ..++++.++++++.........+++++++|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~ 72 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAA---AALRAGLLGYYPDPG-----LPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEAL 72 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHH---HhhccCCCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 5789999888776655543221 111112235777777 59999999999976322222356899999999999
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc--------c---ccCCCeEEEEcCCCCCCccc
Q 012785 177 QAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR--------F---NKDGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 177 ~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~--------l---~~~~~~~i~v~~P~NPtG~~ 245 (456)
..++.++..+|+ +|+++.|+|+.+...++..|.+++.++.+.+. + ...+++++++++|+||||.+
T Consensus 73 ~~~~~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~ 148 (350)
T cd00609 73 SLLLRALLNPGD----EVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAV 148 (350)
T ss_pred HHHHHHhCCCCC----EEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcc
Confidence 999999999999 99999999999999999999998877664322 1 12367899999999999999
Q ss_pred ch--------HHhhhcCcEEEeeecCCCCCCCC-------CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHH
Q 012785 246 RQ--------SVVNRSGGILVHDLAYYWPQYTS-------ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT 310 (456)
Q Consensus 246 ~~--------~l~~~~~~~iI~De~y~~~~~~~-------~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~ 310 (456)
++ ++|+++|+++|+|++|.+..+.+ .....+.+++++|+||.++++|.|+||++++++++.+.++
T Consensus 149 ~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~ 228 (350)
T cd00609 149 LSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLK 228 (350)
T ss_pred cCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHH
Confidence 87 37889999999999998532211 1234567899999999999899999999997338999999
Q ss_pred HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccccc
Q 012785 311 KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 311 ~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~ 390 (456)
......+.+.+...|.++..+|+. . .+..++.++.++++++.+.+.|++.+......+.+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~------- 290 (350)
T cd00609 229 KLLPYTTSGPSTLSQAAAAAALDD---G--------EEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGF------- 290 (350)
T ss_pred HHHHhcccCCChHHHHHHHHHHhC---c--------HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccE-------
Confidence 888777788999999999988872 2 2578889999999999999999987654323334444
Q ss_pred CCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC-CCCCeEEEEecCChhHHHHHHHHHHh
Q 012785 391 FEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG-FSPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 391 ~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg-~~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
|+|++++. +.+.+.+++.++||.+.++..|. ....++|++++..+++++.++++|++
T Consensus 291 ------~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~~ 350 (350)
T cd00609 291 ------FLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE 350 (350)
T ss_pred ------EEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhhC
Confidence 89999865 46678889999999999998885 35789999998778999999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=245.59 Aligned_cols=270 Identities=16% Similarity=0.133 Sum_probs=208.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEe---CCCCCChhhhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSA---APYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~---~P~y~~~~~~~~~~g~~~~~~ 218 (456)
+.+|++.+|++++. +++++++++|+.+++..++.++.++|| +|+++ .|+|+.|...++..|++++.+
T Consensus 56 ~~~Le~~lA~~~g~------~~e~ilv~~gg~~a~~~~~~al~~~gd----~Vli~~~d~p~~~s~~~~~~l~ga~~~~~ 125 (346)
T TIGR03576 56 EEKVQELGREHLGG------PEEKILVFNRTSSAILATILALEPPGR----KVVHYLPEKPAHPSIPRSCKLAGAEYFES 125 (346)
T ss_pred HHHHHHHHHHHcCC------CcceEEEECCHHHHHHHHHHHhCCCCC----EEEECCCCCCCchhHHHHHHHcCCEEecc
Confidence 47888888888865 567999999999999999999999999 99874 579999999999999987654
Q ss_pred ccCcccccc-CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCC---CC-CCCCCCCCcEEEecCc
Q 012785 219 AGDAKRFNK-DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQ---YT-SITYPADHDLMLFTVS 285 (456)
Q Consensus 219 ~~d~~~l~~-~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~---~~-~~~~~~~~~i~i~S~S 285 (456)
. |.+.++. .++++|++ +++||+|.+++ ++|+++++++|+||+|.... +. +.....+..++++|||
T Consensus 126 ~-~l~~l~~~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~S 203 (346)
T TIGR03576 126 D-ELSELKKIDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTD 203 (346)
T ss_pred C-CHHHHhhCcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccc
Confidence 2 4443432 35677777 56799999865 25788999999999998531 11 1111123458889999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
| +++|+|+||++++ +++++.+.+......++.+++.|.++.++|+. . ..+..++.+++|++.+.
T Consensus 204 K--alaG~r~G~v~~~-~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~---~----------~~~~~~~~l~~r~~~~~ 267 (346)
T TIGR03576 204 K--LMDGPRGGLLAGR-KELVDKIKSVGEQFGLEAQAPLLAAVVRALEE---F----------ELSRIRDAFKRKEEVYL 267 (346)
T ss_pred h--hccccceEEEEeC-HHHHHHHHHhhcCcccCccHHHHHHHHHHHhh---c----------cHHHHHHHHHHHHHHHH
Confidence 9 5789999999997 99999999987655666789999999998872 1 12466888999998888
Q ss_pred HHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChh-
Q 012785 366 MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDE- 442 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e- 442 (456)
+.++++ .+. ++.++|+|++++. +.+++.++++++||.++||+.|...++|+||+++.+++
T Consensus 268 ~~l~~~---~~~--------------~~~~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~ 330 (346)
T TIGR03576 268 RLFDKL---NVE--------------RTPTGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAE 330 (346)
T ss_pred HHHHhC---CCC--------------cCCCeEEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHH
Confidence 888742 222 2334489999864 35788899999999999999885447899999976554
Q ss_pred --HHHHHHHHHHhhhC
Q 012785 443 --NYNLFVQRLSKILS 456 (456)
Q Consensus 443 --~i~~~l~~L~~~l~ 456 (456)
+++.+++.|++-++
T Consensus 331 ~~~~~~~~~al~~~~~ 346 (346)
T TIGR03576 331 RIGDDYLVEAVKDSLK 346 (346)
T ss_pred hcCHHHHHHHHHhccC
Confidence 79999999988664
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=252.23 Aligned_cols=316 Identities=10% Similarity=0.086 Sum_probs=231.6
Q ss_pred hcCCCCeEEecCCCC--CCCchhH---hhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCc
Q 012785 90 QDGGERIINVDHGDP--TMYEKYW---QKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENH 164 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p--~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~ 164 (456)
+..+.++|+|+.|+| |+.++.. +.++.. .++..+ ...|++..| .++||++++++++. +
T Consensus 32 ~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~-~a~~~g---~~~Y~~~~g-----~~~Lreaia~~~~~--------~ 94 (460)
T PRK13238 32 AEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQW-AAMMRG---DEAYAGSRS-----YYRLEDAVKDIFGY--------P 94 (460)
T ss_pred HHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHH-HHHHhC---CcccCCCCC-----HHHHHHHHHHHhCC--------C
Confidence 457889999999999 7887652 222211 222233 246999889 49999999999963 4
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC----------------cccccc-
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD----------------AKRFNK- 227 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d----------------~~~l~~- 227 (456)
+|++|+|+++++.+++.+++++|| |++++|.|+.|...+...|++++.++.+ .+.++.
T Consensus 95 ~vv~t~ggt~A~~~~~~all~pGD-----Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~ 169 (460)
T PRK13238 95 YTIPTHQGRAAEQILFPVLIKKGD-----VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEAL 169 (460)
T ss_pred cEEECCCHHHHHHHHHHHhCCCCC-----EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHH
Confidence 799999999999999999999997 8899999999999999999998865543 333322
Q ss_pred ------CCCeEEEEcCCCCCCc-ccch--------HHhhhcCcEEEeeecCCCC----------CCCCCCCCCCCcEEEe
Q 012785 228 ------DGPYIELVTSPNNPDG-SVRQ--------SVVNRSGGILVHDLAYYWP----------QYTSITYPADHDLMLF 282 (456)
Q Consensus 228 ------~~~~~i~v~~P~NPtG-~~~~--------~l~~~~~~~iI~De~y~~~----------~~~~~~~~~~~~i~i~ 282 (456)
.++++|++++|||||| .+++ ++|+++|+++|+|+++... ++... ...+-++.++
T Consensus 170 i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~-si~~i~~~~~ 248 (460)
T PRK13238 170 IEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDK-SIKEIAREMF 248 (460)
T ss_pred HhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCC-CHHHHhhhhc
Confidence 2578999999999998 7766 3799999999999977421 11111 1111234457
Q ss_pred cCccccCCCCceE-----E-EEEEeCHHHHHHHHHHH----hhccCcC-ChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 283 TVSKSTGHAGTRI-----G-WALVKDMEVAKKMTKYI----ELNTIGV-SKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 283 S~SK~~g~~G~Ri-----G-~l~~~~~~~~~~l~~~~----~~~~~~~-s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
|++|.+.++|+|+ | |+++++++++++++... ...+++. +...|.+++..|....+ +++++
T Consensus 249 s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~---------~~~~~ 319 (460)
T PRK13238 249 SYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMD---------EDYLA 319 (460)
T ss_pred ccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhC---------hHHHH
Confidence 7888887778776 3 55555578888887773 3335555 44448887777763211 23333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-----------cHHHHHHHHHhCCEEe
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-----------EIEDCESFLKGNKILT 420 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----------~~~~~~~~l~~~gI~v 420 (456)
.. .+++++|.+.|.+.+ +.+..|.|++ |+++++.. +...+.+++++.||.+
T Consensus 320 ~~----~~~~~~l~~~L~~~G-~~~~~p~Gg~-------------~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~ 381 (460)
T PRK13238 320 YR----IGQVEYLGEGLEEAG-VPIQTPAGGH-------------AVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRG 381 (460)
T ss_pred HH----HHHHHHHHHHHHHCC-CCeEccCCce-------------EEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeee
Confidence 33 335789999998874 7888899998 78887642 3567889999999999
Q ss_pred ecCCCCCC------C------CCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 421 RSGKHFGF------S------PKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 421 ~pg~~fg~------~------~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
.|++.|.. + .+.+|+++.. +.+.++.+.++|+++.
T Consensus 382 ~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~ 431 (460)
T PRK13238 382 VEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVK 431 (460)
T ss_pred ecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 99998842 1 4789999997 9999999999998864
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=217.95 Aligned_cols=312 Identities=19% Similarity=0.242 Sum_probs=232.2
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
.-|++++.++..+.+..++|...+ + ...|++++. .+++.+++.- .+. .+++|+++.
T Consensus 38 a~G~~iv~ld~~e~~ryPdP~q~e------f------k~~~~d~rn------k~ls~a~~~d-----kpL-t~dnic~Gv 93 (375)
T KOG0633|consen 38 ALGRDIVKLDANENPRYPDPEQME------F------KYVYPDPRN------KRLSDALAQD-----KPL-TSDNICVGV 93 (375)
T ss_pred hcCCCceEeccccCCCCcCHHHcc------c------ccccCCccc------chhhhhcccC-----CCC-CccceEEec
Confidence 345677888766544333321111 1 124666663 6666665543 222 368999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccc----ccC-CCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRF----NKD-GPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l----~~~-~~~~i~v~~P~ 239 (456)
|+.|.|.+++++.+.||.. +|+...|+|..|.-.+...+++++.++. +.+++ +.+ ++|++++++|+
T Consensus 94 GsDE~ID~iiR~~c~PGke---KIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPg 170 (375)
T KOG0633|consen 94 GSDELIDLIIRCVCDPGKE---KILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPG 170 (375)
T ss_pred CcHHHHHHHHhheecCCcc---ceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCC
Confidence 9999999999999999932 9999999999999999999999986554 33333 233 68999999999
Q ss_pred CCCcccchH-----Hhhh-cCcEEEeeecCCCCCC----CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 240 NPDGSVRQS-----VVNR-SGGILVHDLAYYWPQY----TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 240 NPtG~~~~~-----l~~~-~~~~iI~De~y~~~~~----~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
||||..++. +++. -|.++++||+|-+++- .++...++|.+++.||||.||++|+|+||-..+ ..+++-+
T Consensus 171 NPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~-~~ia~il 249 (375)
T KOG0633|consen 171 NPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFP-LSIAEIL 249 (375)
T ss_pred CCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhcCcceeEeeccccc-HHHHHHH
Confidence 999999884 4444 4789999999986432 334467899999999999999999999999997 8899888
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
...+. ++++|.....+|.++|. +.. -+.++..++.+.+.|.++...|.+.+++.- .
T Consensus 250 n~~Ka--PYNiS~~~s~~AL~Als---~~n-------~kkme~~rdaiv~er~RL~keLt~v~~~~~--~---------- 305 (375)
T KOG0633|consen 250 NRAKA--PYNISVAGSVAALAALS---DSN-------GKKMEDVRDAIVRERERLFKELTEVPFLND--Y---------- 305 (375)
T ss_pred HhccC--CccccchhHHHHHHhcC---ccc-------chHHHHHHHHHHHHHHHHHHHhhcCccccC--C----------
Confidence 88876 88999999999998887 321 357888899999999999999988764321 1
Q ss_pred cCCCCCceEEeecCc-----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 390 AFEPQPAFAWLKCEQ-----EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~-----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+.+..+||+.+++.+ ......+.+.++||.||--..-....+++||++ +++|+...+++.|++++
T Consensus 306 ~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitv-Gt~EentvL~k~~K~~l 375 (375)
T KOG0633|consen 306 PGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITV-GTPEENTVLMKCLKQFL 375 (375)
T ss_pred CCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEc-CCcccchHHHHHHHhhC
Confidence 223466799998753 234456677789999985221111478999998 67777889999998864
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=230.50 Aligned_cols=317 Identities=13% Similarity=0.091 Sum_probs=218.1
Q ss_pred cCCCCeEEecCCCCCC-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTM-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
..++.+|||+.|+|.. +.++.+.+... ..+..-......|....|. .....+++++++++++. ++.|+++
T Consensus 13 ~~g~~~id~~~~~~~g~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g~-~~~~~~l~~~la~~~~~-------~~~i~~~ 83 (360)
T TIGR00858 13 RDGRRLLNFSSNDYLGLASHPEVIQAAQ-QGAEQYGAGSTASRLVSGN-SPLHEELEEELAEWKGT-------EAALLFS 83 (360)
T ss_pred ECCceEEecccCCcccCCCCHHHHHHHH-HHHHhcCCCCCCcCcccCC-cHHHHHHHHHHHHHhCC-------CCEEEEC
Confidence 3567899999997643 34444544322 2222101111112111220 00035688888888752 4689999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc-------CCCeEEEEcCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK-------DGPYIELVTSPNNP 241 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~-------~~~~~i~v~~P~NP 241 (456)
+|+++.+ .++.+++++|| +|++++|+|+.+...++..|.+++.++. |.+.++. .+++++++++++||
T Consensus 84 ~G~~~~~-~~l~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~ 158 (360)
T TIGR00858 84 SGYLANV-GVISALVGKGD----LILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSM 158 (360)
T ss_pred chHHHHH-HHHHHhCCCCC----EEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccC
Confidence 9875555 56788889999 9999999999999999999998876653 5555432 14678888999999
Q ss_pred Ccccch-----HHhhhcCcEEEeeecCCCCCC----CC---CC--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 242 DGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TS---IT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 242 tG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~---~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
||...+ ++|+++++++|+||+|....+ .+ .. ...+++|+++||||.+|++| ||++++ +++++
T Consensus 159 ~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~~~~-~~~~~ 234 (360)
T TIGR00858 159 DGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYVAGS-QALID 234 (360)
T ss_pred CCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEEEcC-HHHHH
Confidence 998755 389999999999999974211 11 11 12467999999999999777 999986 88888
Q ss_pred HHHHHHhhc--cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 308 KMTKYIELN--TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 308 ~l~~~~~~~--~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
.+....... +.+.++..+.++.+.++.. +..+..+++++++++.+.+.|++++ +.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------------~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~------- 294 (360)
T TIGR00858 235 YLINRARTLIFSTALPPAVAAAALAALELI------------QEEPWRREKLLALIARLRAGLEALG-FTLMP------- 294 (360)
T ss_pred HHHHhCccceecCCCCHHHHHHHHHHHHHH------------hhCHHHHHHHHHHHHHHHHHHHHcC-CccCC-------
Confidence 886543322 2335555555666666531 1234678899999999999998865 33332
Q ss_pred cccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHH
Q 012785 386 FLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLS 452 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~ 452 (456)
+.++|+|+.++. +...+.+.|.++||.+.++..++. +.+++||++.. +++++++++++|+
T Consensus 295 -------~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 295 -------SCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred -------CCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 223378988864 356788888899999999776642 35699999974 8999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=229.02 Aligned_cols=318 Identities=12% Similarity=0.105 Sum_probs=217.4
Q ss_pred CCCCeEEecCCC-CCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHh-cCccCCCceEEEc
Q 012785 92 GGERIINVDHGD-PTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-GNAITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-g~~~~~~~~I~~t 169 (456)
.++.+|||+.|+ |+++.++.+.+... ..+.........|....| .+++++++++++..+ |. +++|++|
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~-~~~~~~~~~~~~~~~~~G-----~~~l~~~l~~~la~~~g~----~~~i~~t 109 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAK-AALDSHGFGMASVRFICG-----TQDLHKELEEKLAKFLGT----EDAILYS 109 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHH-HHHHHcCCCCcccccccC-----CcHHHHHHHHHHHHHhCC----CcEEEEc
Confidence 567899999998 67765554443322 222221111112233456 478888888877543 41 3689999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc-------C--CCeEEEEcCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK-------D--GPYIELVTSPN 239 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~-------~--~~~~i~v~~P~ 239 (456)
+| ++++..++.+++++|| .|++++|+|+.+...++..|.+++.++. |.+.++. . +++++++.+.+
T Consensus 110 sG-~~a~~~~~~~l~~~gd----~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~ 184 (397)
T PRK06939 110 SC-FDANGGLFETLLGKED----AIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVF 184 (397)
T ss_pred Ch-HHHHHHHHHHhCCCCC----EEEEEhhhhHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCc
Confidence 98 6788899999999999 9999999999999999999998877653 4444321 2 56777777779
Q ss_pred CCCcccch-----HHhhhcCcEEEeeecCCC--CCCC-----CCCC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 240 NPDGSVRQ-----SVVNRSGGILVHDLAYYW--PQYT-----SITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 240 NPtG~~~~-----~l~~~~~~~iI~De~y~~--~~~~-----~~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
||||...+ ++|+++++++|+||+|.. .... .... ..+.+++++||||.++ |.|+||++++ ++++
T Consensus 185 ~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v~~~-~~~~ 261 (397)
T PRK06939 185 SMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG--GASGGYTAGR-KEVI 261 (397)
T ss_pred CCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC--ccCceEEEeC-HHHH
Confidence 99998654 389999999999999952 1111 1111 2245799999999984 4599999997 8898
Q ss_pred HHHHHHHhhccC--cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 307 KKMTKYIELNTI--GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 307 ~~l~~~~~~~~~--~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+.+........+ ..++..+.++.+.++.+.+ .++.+++++++++.+.+.|++.+ +....+.++
T Consensus 262 ~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~------------~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~-- 326 (397)
T PRK06939 262 DWLRQRSRPYLFSNSLAPAIVAASIKVLELLEE------------SDELRDRLWENARYFREGMTAAG-FTLGPGEHP-- 326 (397)
T ss_pred HHHHHhCccccccCCCCHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHHHHHHcC-CCcCCCCCC--
Confidence 888765332222 2234445555555653211 24678889999999999998874 444434333
Q ss_pred ccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
|+++.++. +.+.+.+.|.++||.+.++ .|+. +.+++|++++ .+++++++++++|++++
T Consensus 327 ------------~~~~~~~~~~~~~~~~~~L~~~gI~v~~~-~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~ 391 (397)
T PRK06939 327 ------------IIPVMLGDAKLAQEFADRLLEEGVYVIGF-SFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVG 391 (397)
T ss_pred ------------EEEEEECCHHHHHHHHHHHHHCCceEeee-CCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 34444442 3456777777789999964 4532 3578999985 38999999999999875
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=229.09 Aligned_cols=289 Identities=13% Similarity=0.144 Sum_probs=201.7
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
++|+++. ...|+++||++.+. +++++++|+++++..++.+++++|| +|++++|+|+.+...+
T Consensus 78 ~R~~~Pt------~~~Le~~lA~leg~--------~~~iv~~sG~~Ai~~~l~al~~~Gd----~Vv~~~p~Y~~~~~~~ 139 (427)
T PRK07049 78 SRFNHPN------SEIVEDRLAVYEGA--------ESAALFSSGMSAIATTLLAFVRPGD----VILHSQPLYGGTETLL 139 (427)
T ss_pred cCCCCcC------HHHHHHHHHHHhCC--------CcEEEEccHHHHHHHHHHHHhCCCC----EEEEcCCCcccHHHHH
Confidence 4677776 48999999999852 4677888888999999999999999 9999999999997764
Q ss_pred ----hhcCCeEeeec--cCccccc--------cCCCeEEEEcCCCCCCcccch-----HHhhh------cCcEEEeeecC
Q 012785 209 ----DCVKSRLYKWA--GDAKRFN--------KDGPYIELVTSPNNPDGSVRQ-----SVVNR------SGGILVHDLAY 263 (456)
Q Consensus 209 ----~~~g~~~~~~~--~d~~~l~--------~~~~~~i~v~~P~NPtG~~~~-----~l~~~------~~~~iI~De~y 263 (456)
...|++++.++ .|.+.++ ..++++|++++||||||.+++ ++++. +++++|+||+|
T Consensus 140 ~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety 219 (427)
T PRK07049 140 AKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTL 219 (427)
T ss_pred HHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCc
Confidence 45788877665 2333332 135799999999999999988 25655 78999999999
Q ss_pred CCCC-CCCCCCCCCCcEEEecCccccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 264 YWPQ-YTSITYPADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 264 ~~~~-~~~~~~~~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
..+. ..++ ..+.+|+++||||.+| ++|+|+||++++ +++++.++..+.....+++++.|.++...|+
T Consensus 220 ~~~~~~~pl--~~g~divv~S~SK~~gG~~glr~G~vv~~-~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~-------- 288 (427)
T PRK07049 220 LGPVFQKPL--EHGADLSVYSLTKYVGGHSDLVAGAVLGR-KALIRQVRALRSAIGTQLDPHSCWMLGRSLE-------- 288 (427)
T ss_pred cccccCCcc--ccCCCEEEEcCceeecCCCCcEEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHHHHcCCC--------
Confidence 7542 2233 3356899999999998 799999999986 8999999988776677799999998877665
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc------ccccccccCCCCCceEEeecCccHHHHHHHHHh
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ------FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKG 415 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~------~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 415 (456)
.+....++..++++.+.+.|++++.+.....+|. .....++.....+..+-+.++++.+.+.+.+..
T Consensus 289 -------tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~ 361 (427)
T PRK07049 289 -------TLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNA 361 (427)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHc
Confidence 2333455668899999999999875543322221 111111112223444566665444444444444
Q ss_pred CCEEe---ecCCCC----------------------CCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 416 NKILT---RSGKHF----------------------GFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 416 ~gI~v---~pg~~f----------------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
-.+.. .-|... |..++.||||++. |+.+.+++.|.+.|
T Consensus 362 l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al 424 (427)
T PRK07049 362 LQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGI--EHPDDLIADLAQAL 424 (427)
T ss_pred CcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHH
Confidence 33322 222111 1124689999964 34556666666655
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=229.15 Aligned_cols=316 Identities=12% Similarity=0.098 Sum_probs=216.5
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhcccccccccCccccccccCCC---CcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVR---NLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
.+.++|||+.|++ .+..++.+.+... .++... ...|+... |. .....+|++++|++++. ++++
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~-~~~~~~---~~~~~~s~~~~G~-~~~~~~le~~ia~~~g~--------~~~i 102 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAK-DALDEH---GFGMSSVRFICGT-QDIHKELEAKIAAFLGT--------EDTI 102 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHH-HHHHHh---CCCCCCcCcccCC-hHHHHHHHHHHHHHhCC--------CcEE
Confidence 5678999999996 6665555544322 222211 01244443 40 00137899999999974 3567
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeee-ccCcccccc-------C--CCeEEEEcC
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKW-AGDAKRFNK-------D--GPYIELVTS 237 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~-~~d~~~l~~-------~--~~~~i~v~~ 237 (456)
+++|+++++..++.+++++|| .|++++|+|+.+...++..+.+.+.+ ..|.+.++. . ++++|++++
T Consensus 103 i~~~~~~a~~~~~~~l~~~gd----~vi~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~ 178 (393)
T TIGR01822 103 LYASCFDANGGLFETLLGAED----AIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDG 178 (393)
T ss_pred EECchHHHHHHHHHHhCCCCC----EEEEeccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeC
Confidence 778889999999999999999 99999999999999888887766543 245555432 1 567888888
Q ss_pred CCCCCcccch-----HHhhhcCcEEEeeecCCCC----CCCC---CCC-CCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 238 PNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP----QYTS---ITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 238 P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~----~~~~---~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
++||||.+.+ ++|+++|+++|+||+|... ...+ ... ..+.+++++|+||.+ +|+|+||++++ ++
T Consensus 179 v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~~~~~-~~ 255 (393)
T TIGR01822 179 VFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKAL--GGASGGFTTAR-KE 255 (393)
T ss_pred CccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHh--hCCCcEEEEeC-HH
Confidence 9999999876 3889999999999999521 1111 111 124579999999986 46899999996 88
Q ss_pred HHHHHHHHHhhccC--cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 305 VAKKMTKYIELNTI--GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 305 ~~~~l~~~~~~~~~--~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++.++.......+ +.++..+.++.+.++.+ +..++.+++++++++++.+.|++.+ +.+..+.+.
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~------------~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 322 (393)
T TIGR01822 256 VVELLRQRSRPYLFSNSLPPAVVGASIKVLEML------------EASNELRDRLWANTRYFRERMEAAG-FDIKPADHP 322 (393)
T ss_pred HHHHHHHhCccceecCCCCHHHHHHHHHHHHHH------------hcCHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCC
Confidence 99988764322222 23444445555656522 1235678889999999999998764 444322222
Q ss_pred ccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++.+.+++ ....+.+.|.++||.+. +..|.. +...+|++++. +++++++++++|++++
T Consensus 323 --------------~~~i~~~~~~~~~~l~~~L~~~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 387 (393)
T TIGR01822 323 --------------IIPVMLYDAVLAQRFARRLLEEGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIG 387 (393)
T ss_pred --------------EEEEEeCCHHHHHHHHHHHHHCCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 44445432 34567777778899998 565642 33579988764 7999999999998874
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=220.56 Aligned_cols=325 Identities=18% Similarity=0.166 Sum_probs=232.6
Q ss_pred CCCCeEEecCCC---CCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE--
Q 012785 92 GGERIINVDHGD---PTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI-- 166 (456)
Q Consensus 92 ~~~~~i~l~~g~---p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I-- 166 (456)
..+..|||++|. .+..+|-......+.+.+.+.. ....|-+..| .+++++++++++-....+....++|
T Consensus 24 ~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~-~~k~Yl~i~G-----~~~f~~~~~~llFG~d~~~l~~~Rv~t 97 (396)
T COG1448 24 PRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE-KTKNYLPIEG-----LPEFLEAVQKLLFGADSPALAEDRVAT 97 (396)
T ss_pred CCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccc-cccccCCcCC-----cHHHHHHHHHHhcCCCcHHHHhhhHhh
Confidence 445679999994 3333221111111222233222 2346888899 5999999999983222222233454
Q ss_pred EEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec--------cCcccccc------CCC
Q 012785 167 VVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA--------GDAKRFNK------DGP 230 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~------~~~ 230 (456)
+-|.|+|.||.++...+.. +.. +|++++|+|+++..+++..|.++..++ +|.+++.. .+.
T Consensus 98 ~Qt~GGTGAL~~~A~fl~~~~~~~----~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~ 173 (396)
T COG1448 98 VQTLGGTGALRVAADFLARFFPDA----TVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGS 173 (396)
T ss_pred eecCCcchHHHHHHHHHHHhCCCc----eEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCC
Confidence 5799999999999988854 333 799999999999999999999997655 34444421 244
Q ss_pred eEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC------C---CCCCCCCcEEEecCccccCCCCc
Q 012785 231 YIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------S---ITYPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~---~~~~~~~~i~i~S~SK~~g~~G~ 293 (456)
.+++..++|||||..++. +.++.+.+.+.|-+|.+..-- + +.......++..||||.||+.|.
T Consensus 174 vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgE 253 (396)
T COG1448 174 VVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGE 253 (396)
T ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhh
Confidence 566778889999999983 667899999999999963211 1 11222348999999999999999
Q ss_pred eEEEEE--EeCHHHHH----HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 294 RIGWAL--VKDMEVAK----KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 294 RiG~l~--~~~~~~~~----~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|+|.+. +.|.+.++ ++....+.+..+++.....+++.+|+..+-. .+|+..++.+++++.++|+.+.+.
T Consensus 254 RVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lr-----a~W~~El~~Mr~Ri~~mR~~lv~~ 328 (396)
T COG1448 254 RVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELR-----AEWEQELEEMRQRILEMRQALVDA 328 (396)
T ss_pred ccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999864 44554444 4455556667788888888889888843332 245788899999999999999999
Q ss_pred HHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhH
Q 012785 368 VQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDEN 443 (456)
Q Consensus 368 L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~ 443 (456)
|+..+ .++....+ .|+|.+..+ +.+++.++.+++||++.... |||++. ++.+
T Consensus 329 L~~~~~~~~f~~i~~Q-------------~GMFsy~Gl--s~~QV~rLree~~IY~v~sG---------Ri~vaGl~~~n 384 (396)
T COG1448 329 LKALGAPRNFDFIISQ-------------RGMFSYTGL--SPEQVDRLREEFGIYLVASG---------RINVAGLNTSN 384 (396)
T ss_pred HHhhCCCcccchHhhc-------------CceeecCCC--CHHHHHHHHHhccEEEecCC---------eeeeccCChhh
Confidence 99842 24444444 444877766 68899999999999998732 999988 9999
Q ss_pred HHHHHHHHHhhh
Q 012785 444 YNLFVQRLSKIL 455 (456)
Q Consensus 444 i~~~l~~L~~~l 455 (456)
++.+.+.|.+++
T Consensus 385 i~~va~ai~~v~ 396 (396)
T COG1448 385 IDYVAKAIAAVL 396 (396)
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=216.41 Aligned_cols=300 Identities=20% Similarity=0.240 Sum_probs=223.3
Q ss_pred ccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCCh
Q 012785 127 SLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSY 204 (456)
Q Consensus 127 ~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~ 204 (456)
+...|+.++|+ +-.|+.+|+|..+ .| ...++++|++|.|++.++..++..++. +.+ .|++|.|.||.|
T Consensus 105 s~GaYS~SqGv-----~~vR~~VA~~I~rRDG-~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~----GvliPiPQYPLY 174 (475)
T KOG0258|consen 105 SLGAYSDSQGV-----PGVRKHVAEFIERRDG-IPADPEDIFLTTGASPAIRSILSLLIAGKKT----GVLIPIPQYPLY 174 (475)
T ss_pred cccccccccCC-----hhHHHHHHHHHHhccC-CCCCHHHeeecCCCcHHHHHHHHHHhcCCCC----ceEeecCCCchh
Confidence 45679999995 9999999999965 56 444578999999999999999998865 445 899999999999
Q ss_pred hhhhhhcCCeEeeeccC--------cccccc--------CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEee
Q 012785 205 PSITDCVKSRLYKWAGD--------AKRFNK--------DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHD 260 (456)
Q Consensus 205 ~~~~~~~g~~~~~~~~d--------~~~l~~--------~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~D 260 (456)
...+..+|...+++-+| .+.++. -+++++++.||.||||.++++ +|.++++.++.|
T Consensus 175 sAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaD 254 (475)
T KOG0258|consen 175 SATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLAD 254 (475)
T ss_pred HHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEech
Confidence 99999999998865554 444432 167889999999999999995 688999999999
Q ss_pred ecCCCCCCC------CCC-------C-CCCC--cEEEecCcccc-CCCCceEEEEEEe--CHHHHHHHHHHHhhccCcCC
Q 012785 261 LAYYWPQYT------SIT-------Y-PADH--DLMLFTVSKST-GHAGTRIGWALVK--DMEVAKKMTKYIELNTIGVS 321 (456)
Q Consensus 261 e~y~~~~~~------~~~-------~-~~~~--~i~i~S~SK~~-g~~G~RiG~l~~~--~~~~~~~l~~~~~~~~~~~s 321 (456)
|+|.+.-|. ++. . ..++ .+.++|.||.+ |=.|-|-||+-+- ++++.+.+.+... ...+.+
T Consensus 255 EVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~s-i~lc~~ 333 (475)
T KOG0258|consen 255 EVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLAS-IKLCPQ 333 (475)
T ss_pred HHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHh-hhhcCC
Confidence 999863222 211 1 1223 56689999987 5678999997543 4677777776654 356666
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEee
Q 012785 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLK 401 (456)
Q Consensus 322 ~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~ 401 (456)
.-.|..+-.+......+. .++..+....+.+...+++|.+.+.+.++..+++++.+++|.| |++.+
T Consensus 334 V~GQ~~vdl~VnPP~Pgd-~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAM-------------Y~fP~ 399 (475)
T KOG0258|consen 334 VSGQKLVDLVVNPPKPGD-PSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAM-------------YLFPQ 399 (475)
T ss_pred ccchhhhceecCCCCCCC-cchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccce-------------eeccc
Confidence 667777666555322221 1112233445567788999999999999999999999999999 55554
Q ss_pred c--C-------------ccHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 402 C--E-------------QEIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 402 ~--~-------------~~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
+ | .+.-.|.++|+..||+++||+.||. +.-++|.++-... + +.+++++++
T Consensus 400 i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~f 466 (475)
T KOG0258|consen 400 ISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKF 466 (475)
T ss_pred ccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHH
Confidence 4 3 1334477899999999999999996 4558999984422 4 666666654
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=223.31 Aligned_cols=318 Identities=13% Similarity=0.098 Sum_probs=220.7
Q ss_pred CCCCeEEecCCC-CCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGD-PTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.++ +.+..++.+.+... ..+.........|....| .+++++++++++...-. .++.|++++
T Consensus 31 ~g~~~id~~~~~~~g~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~g-----~~~l~~~l~~~l~~~~g---~~~~i~~~s 101 (385)
T TIGR01825 31 NGKEVINLSSNNYLGFADHPRLKEAAA-QAIQQYGVGAGAVRTIAG-----TLRLHEELEEKLAKFKK---TEAALVFQS 101 (385)
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHH-HHHHHcCCCCCccCcccC-----CcHHHHHHHHHHHHHhC---CCcEEEECc
Confidence 457889999887 67755554544322 222221111234666778 58999999999865322 135788888
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec-cCcccccc-------CCCeEEEEcCCCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA-GDAKRFNK-------DGPYIELVTSPNNPD 242 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~-~d~~~l~~-------~~~~~i~v~~P~NPt 242 (456)
|+ +++..++.+++++|| .|+++.|+|+.+...+...|.++..++ .|.+.++. .+++++++++++|||
T Consensus 102 G~-~a~~~a~~~~~~~gd----~vi~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~t 176 (385)
T TIGR01825 102 GF-NTNQGVLSALLRKGD----IVLSDELNHASIIDGLRLTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMD 176 (385)
T ss_pred HH-HHHHHHHHHhCCCCC----EEEEEccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCC
Confidence 85 566678888999999 999999999999888888888876654 45544432 257888888889999
Q ss_pred cccch-----HHhhhcCcEEEeeecCCCCCCC--------CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 243 GSVRQ-----SVVNRSGGILVHDLAYYWPQYT--------SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 243 G~~~~-----~l~~~~~~~iI~De~y~~~~~~--------~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
|.+.+ ++|+++|+++|+||+|....+. .+....+++++++||||.+|++| ||++++ +++++.+
T Consensus 177 G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~-~~~~~~~ 252 (385)
T TIGR01825 177 GDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGH-KELIEYL 252 (385)
T ss_pred CCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecC-HHHHHHH
Confidence 99876 4899999999999999642111 11122578999999999998766 999986 8888888
Q ss_pred HHHHh-hc-cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 310 TKYIE-LN-TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 310 ~~~~~-~~-~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
..... .. ....++..|.++.+.++.+.+. .+..++++++++++.+.|++.+ +.+..+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~------------~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~------ 313 (385)
T TIGR01825 253 KNRARPFLFSTAQPPAVVAALAAAVDELQRS------------PELMERLWDNTRFFKAGLGKLG-YDTGGSET------ 313 (385)
T ss_pred HHhCccccccCCCCHHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCC------
Confidence 76532 21 2234567777877877632221 1356667788899999998764 44433332
Q ss_pred cccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 388 GRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+++++.++. +.+.+.+.|.++||.++ +..|+. +.+++|+++. .++|++++++++|++++
T Consensus 314 --------~~~~~~~~~~~~~~~~~~~L~~~gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~ 379 (385)
T TIGR01825 314 --------PITPVVIGDEKAAQEFSRRLFDEGIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVG 379 (385)
T ss_pred --------CEEEEEECCHHHHHHHHHHHHHCCcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 244444532 34567777777799985 455542 4578999864 49999999999999875
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=229.84 Aligned_cols=317 Identities=10% Similarity=0.081 Sum_probs=226.6
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhccccccccc-Cccc---cccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIP-GWQS---LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~-~~~~---~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.++.+|||+.+++ .+..++.+.++.. ..+.. +... -..|++..+ ..+|+++|+++++. ++.|
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~-~al~~~G~g~~g~r~~yg~~~~-----~~~Lee~La~~~~~-------~~~i 173 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCT-SALEKYGVGSCGPRGFYGTIDV-----HLDCETKIAKFLGT-------PDSI 173 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHH-HHHHHhCCCCcccCccccCHHH-----HHHHHHHHHHHhCC-------CCEE
Confidence 5678999998865 5656666655432 22322 2110 113555555 58999999999973 4689
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Cccccc-------c-----CCC-eE
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFN-------K-----DGP-YI 232 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~-------~-----~~~-~~ 232 (456)
++++|.+ ++..++.+++++|| .|+++...+..+...+...|.+++.++. |.+.++ . .++ ++
T Consensus 174 ~~s~G~~-a~~sai~a~~~~gd----~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~ 248 (481)
T PLN02822 174 LYSYGLS-TIFSVIPAFCKKGD----IIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRY 248 (481)
T ss_pred EECCHHH-HHHHHHHHhCCCCC----EEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEE
Confidence 9999887 57889999999999 8887766666666677788888887764 333332 1 123 68
Q ss_pred EEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC--C--CCCCC---C--CCCCcEEEecCccccCCCCceEEEE
Q 012785 233 ELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP--Q--YTSIT---Y--PADHDLMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 233 i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~--~--~~~~~---~--~~~~~i~i~S~SK~~g~~G~RiG~l 298 (456)
|+++.++|+||.+.+ ++|++|++++|+||+|... + ..+.. . ..+.+|+++||||++|.+| ||+
T Consensus 249 Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i 325 (481)
T PLN02822 249 IVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---GFC 325 (481)
T ss_pred EEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---eEE
Confidence 888889999999988 4899999999999999831 1 11111 1 1356799999999999888 999
Q ss_pred EEeCHHHHHHHHHHHhhccCcCC--hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 299 LVKDMEVAKKMTKYIELNTIGVS--KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~s--~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
+++ +++++.++......+++.+ +..|.++.++|+.+. + ....+++++++++++.+.|++..++.+
T Consensus 326 ~g~-~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~-----------~-~~~~~~~l~~~~~~l~~~L~~~~g~~~ 392 (481)
T PLN02822 326 TGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-----------D-NPSVLAKLKENIALLHKGLSDIPGLSI 392 (481)
T ss_pred EcC-HHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHH-----------h-CHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 996 8999988766555566554 777888888887421 1 246788899999999999998755666
Q ss_pred cCCCCcccccccccCCCCCceEEeecCcc----------HHHHHHHH-HhCCEEeecC--CCCCC--CCCeEEEEec--C
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQE----------IEDCESFL-KGNKILTRSG--KHFGF--SPKYVRISML--D 439 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----------~~~~~~~l-~~~gI~v~pg--~~fg~--~~~~iRis~~--~ 439 (456)
..+.++. ++++.+++. ...+.+.| .++||.+.|+ ..|+. .+.++|++++ .
T Consensus 393 ~~~~~sp-------------i~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~ 459 (481)
T PLN02822 393 GSNTLSP-------------IVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGH 459 (481)
T ss_pred CCCCCCC-------------EEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCC
Confidence 5555554 677777421 13455555 5899999976 44542 3468999876 4
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
++++|++++++|++++
T Consensus 460 t~edI~~~~~~l~~~~ 475 (481)
T PLN02822 460 TESDILKASESLKRVA 475 (481)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998875
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=230.38 Aligned_cols=279 Identities=15% Similarity=0.089 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCC---CCcEEEEeCCCCCChhhhhhhcCCeE----
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDAS---EPISVVSAAPYYSSYPSITDCVKSRL---- 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~---~~~~Vlv~~P~y~~~~~~~~~~g~~~---- 215 (456)
.++++++++++.... ..+++++|+|+++++.++++++...++. +..+|++.+++|+++.......+...
T Consensus 80 ~~~~~~la~~l~~~~----~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 155 (396)
T PRK02627 80 IEPQEELAEKLVELS----GMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQE 155 (396)
T ss_pred CHHHHHHHHHHHhhc----CCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccc
Confidence 466677777764321 2369999999999999999987654421 00189999999998876655543211
Q ss_pred ---------eee-ccCcccccc---CCCeEEEEcCCCCCCc-ccch--------HHhhhcCcEEEeeecCCCCCCCCC--
Q 012785 216 ---------YKW-AGDAKRFNK---DGPYIELVTSPNNPDG-SVRQ--------SVVNRSGGILVHDLAYYWPQYTSI-- 271 (456)
Q Consensus 216 ---------~~~-~~d~~~l~~---~~~~~i~v~~P~NPtG-~~~~--------~l~~~~~~~iI~De~y~~~~~~~~-- 271 (456)
..+ ..|.+.++. .+++++++++++||+| .+++ ++|+++++++|+||+|.+..+.+.
T Consensus 156 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~ 235 (396)
T PRK02627 156 GFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLF 235 (396)
T ss_pred cCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCcee
Confidence 001 114555543 3678999988899999 4554 289999999999999986433321
Q ss_pred C-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 272 T-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 272 ~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
. ...+-.--+.||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.++|+.+.+ +++.
T Consensus 236 ~~~~~~~~pdi~t~sK~~~-~G~rig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---------~~~~ 304 (396)
T PRK02627 236 AYQHYGIEPDIMTLAKGLG-GGVPIGAVLAK-EKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE---------EGLL 304 (396)
T ss_pred eehhcCCCCCEEEEcchhh-CCcccEEEEEc-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh---------ccHH
Confidence 1 11111111457999999 99999999997 88888887655567889999999999999985432 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSP 430 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~ 430 (456)
++.++..+..++.+.+.+.+.+.+...++ .++|+|++++.+...+.+.+.++||.+.|+. .
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~-----~ 365 (396)
T PRK02627 305 ENAAEVGEYLRAKLRELLEKYPGIKEVRG--------------LGLMIGIELDRPAAEIVKKALEKGLLINVTG-----D 365 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeecc--------------CcEEEEEEecCcHHHHHHHHHHCCeEEeecC-----C
Confidence 44444444444444444443332222222 2337899885556677777778899999953 5
Q ss_pred CeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 431 KYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 431 ~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+++|++++ .+++++++++++|++++
T Consensus 366 ~~lRi~~~~~~~~~~i~~~~~~l~~~l 392 (396)
T PRK02627 366 NVLRLLPPLIISKEEIDEAVDRLEEVL 392 (396)
T ss_pred CEEEEECCcccCHHHHHHHHHHHHHHH
Confidence 78999864 48999999999998876
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=227.06 Aligned_cols=264 Identities=16% Similarity=0.124 Sum_probs=181.2
Q ss_pred CceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEe-------------eec-cCccc
Q 012785 163 NHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDCVKSRLY-------------KWA-GDAKR 224 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~-------------~~~-~d~~~ 224 (456)
.+++++++|+++|++.+++++. .+||..+.+|++.+++|+++...+...+.... .++ .|.+.
T Consensus 88 ~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 167 (389)
T PRK01278 88 ADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEA 167 (389)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHH
Confidence 3689999999999999998873 34543233899999999999877765543211 111 25555
Q ss_pred ccc---CCCeEEEEcCCCCCCc-ccch--------HHhhhcCcEEEeeecCCCCCCCCC--C-CCCCCcEEEecCccccC
Q 012785 225 FNK---DGPYIELVTSPNNPDG-SVRQ--------SVVNRSGGILVHDLAYYWPQYTSI--T-YPADHDLMLFTVSKSTG 289 (456)
Q Consensus 225 l~~---~~~~~i~v~~P~NPtG-~~~~--------~l~~~~~~~iI~De~y~~~~~~~~--~-~~~~~~i~i~S~SK~~g 289 (456)
++. .++++|+++.+|||+| .+++ ++|+++|+++|+||+|.+..+.+- . ...+-..-+.||||.++
T Consensus 168 l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~ 247 (389)
T PRK01278 168 LKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIG 247 (389)
T ss_pred HHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhcc
Confidence 543 3678888887788888 4555 389999999999999996543321 1 01111111568999999
Q ss_pred CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 012785 290 HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQ 369 (456)
Q Consensus 290 ~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 369 (456)
+|+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.+. ...++++++.+.++++.+.+ .+
T Consensus 248 -~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~------~~~~~~~~~~~~l~~~l~~l---~~ 316 (389)
T PRK01278 248 -GGFPLGACLAT-EEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAP------GFLDNVQRMGLYLKQKLEGL---VD 316 (389)
T ss_pred -CCcceEEEEEc-HHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHH---Hh
Confidence 99999999997 888888877666678899999999999988855332 01233444444444443332 22
Q ss_pred hcC-CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHH
Q 012785 370 KSG-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNL 446 (456)
Q Consensus 370 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~ 446 (456)
..+ .+...++.| .++|++++.+...+.+.|.++||.+.|+. .+++||+++ .+++++++
T Consensus 317 ~~~~~~~~v~g~G--------------~~~~i~~~~~~~~~~~~l~~~GV~~~p~~-----~~~lR~~p~~~~~~~~i~~ 377 (389)
T PRK01278 317 RFPDVIEEVRGKG--------------LLLGLKCVVPNRDLVQALRDEGLLTVGAG-----DNVVRLLPPLIITEEEIDE 377 (389)
T ss_pred hCCCceeeEeccc--------------EEEEEEEecCHHHHHHHHHHCCeEEeecC-----CCEEEEeCCcccCHHHHHH
Confidence 222 222223322 26788775456667777778899999963 689999954 48999999
Q ss_pred HHHHHHhhhC
Q 012785 447 FVQRLSKILS 456 (456)
Q Consensus 447 ~l~~L~~~l~ 456 (456)
++++|+++++
T Consensus 378 ~l~~l~~~l~ 387 (389)
T PRK01278 378 ALERLERAAE 387 (389)
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=223.56 Aligned_cols=278 Identities=14% Similarity=0.144 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCC----hhhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSS----YPSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~ 214 (456)
.++|++++++++. .++++|++|+|+++++++++.++ .++|| +|++++|.|+. +...++..|++
T Consensus 63 ~~~r~~la~~~g~-----~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd----~Vl~~~~~~~s~~~~~~~~~~~~g~~ 133 (398)
T TIGR03392 63 ELARQQVARFLNA-----PDAENIVWTRGTTESINLVAQSYARPRLQPGD----EIIVSEAEHHANLIPWLMVAQQTGAK 133 (398)
T ss_pred HHHHHHHHHHhCC-----CCCCeEEEeCChHHHHHHHHHHhhhccCCCCC----EEEECCcchhHHHHHHHHHHHHcCcE
Confidence 5788999998864 13578999999999999999988 46888 99999999876 44566788999
Q ss_pred EeeeccCc------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEE
Q 012785 215 LYKWAGDA------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLM 280 (456)
Q Consensus 215 ~~~~~~d~------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~ 280 (456)
++.++.|. +.++. .+++++++++||||||.+++ ++|+++|+++|+|++|.......-....+-+++
T Consensus 134 v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~ 213 (398)
T TIGR03392 134 VVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFY 213 (398)
T ss_pred EEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEE
Confidence 88776643 33322 36799999999999999987 378999999999999974333211122345788
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHH---------------------hhccCcCChHHHHHHHHHHHhhhCCC
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI---------------------ELNTIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~---------------------~~~~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
++|++|.+|.+| +||++++ +++++++.... .......+.....++.++++.+.+.
T Consensus 214 ~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~- 289 (398)
T TIGR03392 214 AFSGHKLYGPTG--IGVLYGK-TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDI- 289 (398)
T ss_pred EEecccccCCCc--eEEEEEc-HHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHh-
Confidence 999999998666 8999996 88777664321 0011123334555555656543221
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCE
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKI 418 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI 418 (456)
-+++.+++.++.++.+.+.|++++++.+..+... ..+++.+++ +.+.+.+.|.++||
T Consensus 290 ---------g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~-------------~i~~~~~~~~~~~~l~~~L~~~gI 347 (398)
T TIGR03392 290 ---------DIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGS-------------SLLAFDFAGVHHSDLAALLAESGI 347 (398)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCC-------------cEEEEEeCCcCHHHHHHHHHhCCE
Confidence 2345677778888888888888765554332221 145556653 45678888899999
Q ss_pred EeecCCCCCC-------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGF-------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+++|..+.. .+++||+|+.. +++|++.+++.|++++
T Consensus 348 ~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~ 393 (398)
T TIGR03392 348 ALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAAL 393 (398)
T ss_pred EEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 9999986631 25799999864 8999999999998875
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=221.15 Aligned_cols=279 Identities=14% Similarity=0.139 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCC----hhhhhhhcCC
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSS----YPSITDCVKS 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~ 213 (456)
..++|+.++++++. .++++|++|+|+++++++++.++. ++|| +|++++|.|+. +...++..|+
T Consensus 65 ~~~~r~~la~~~g~-----~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~ 135 (401)
T PRK10874 65 YEAAREQVAQLLNA-----PDAKNIVWTRGTTESINLVAQSYARPRLQPGD----EIIVSEAEHHANLVPWLMVAQQTGA 135 (401)
T ss_pred HHHHHHHHHHHcCC-----CCCCEEEEECCHHHHHHHHHHHhhhccCCCcC----EEEECCcchHHHHHHHHHHHHHhCC
Confidence 36788888888863 135789999999999999999983 6888 99999999875 4556677899
Q ss_pred eEeeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcE
Q 012785 214 RLYKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDL 279 (456)
Q Consensus 214 ~~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i 279 (456)
+++.++.+ .+.++. .+++++++++|+||||.+++ ++|+++|+++|+|++|....+..-....+.++
T Consensus 136 ~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~ 215 (401)
T PRK10874 136 KVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDF 215 (401)
T ss_pred EEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCE
Confidence 98877654 333332 36799999999999999987 37899999999999997432221112234679
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHH---------------------hhccCcCChHHHHHHHHHHHhhhCC
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI---------------------ELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~---------------------~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
++.|++|.+|.+| +||++++ +++++.+.... .....+.+...+.++.++++.+.+
T Consensus 216 ~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~- 291 (401)
T PRK10874 216 YAFSGHKLYGPTG--IGVLYGK-SELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLAD- 291 (401)
T ss_pred EEEecccccCCCc--cEEEEEc-hHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHH-
Confidence 9999999999777 5999996 88877664321 111123444566666666664322
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCC
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNK 417 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~g 417 (456)
...++.+++.++.++.+.+.|++++++....++.. .++++.++. +.+++.+.|.++|
T Consensus 292 ---------~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~-------------~i~~~~~~~~~~~~~~~~L~~~g 349 (401)
T PRK10874 292 ---------IDINQAESWSRSLATLAEDALAKLPGFRSFRCQDS-------------SLLAFDFAGVHHSDLVTLLAEYG 349 (401)
T ss_pred ---------hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC-------------cEEEEEECCcCHHHHHHHHHHCC
Confidence 12345677788888889999988755544332222 245556653 4567878889999
Q ss_pred EEeecCCCCCC-------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFGF-------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|.+++|..+.. ..+++|+|+.. ++++++.+++.|++++
T Consensus 350 I~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~ 396 (401)
T PRK10874 350 IALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRAL 396 (401)
T ss_pred cEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 99999987631 25799999974 8999999999998875
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=226.43 Aligned_cols=269 Identities=18% Similarity=0.166 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcC----------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVK---------- 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g---------- 212 (456)
.+|.+.++++++. ...+++++++|+++++..+++.+..+|+. +|+..+++|+++...+...+
T Consensus 88 ~~la~~l~~~~~~-----~~~~~v~~~~sgsea~~~al~~~~~~g~~---~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 159 (398)
T PRK03244 88 IALAERLVELLGA-----PEGGRVFFCNSGAEANEAAFKLARLTGRT---KIVAAEGGFHGRTMGALALTGQPAKRAPFE 159 (398)
T ss_pred HHHHHHHHHhCCC-----CCCCEEEEeCchHHHHHHHHHHHHHHCCC---eEEEECCCcCCccHHHHhccCCcccccCCC
Confidence 5666666666431 12368999999999999999987767643 78888899998865443221
Q ss_pred ---CeEeeec-cCcccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCC--CC--
Q 012785 213 ---SRLYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTS--IT-- 272 (456)
Q Consensus 213 ---~~~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~--~~-- 272 (456)
.++..++ .|.+.++. .++++++++.++||+|.+++ ++|+++|+++|+||+|.+.++.+ ..
T Consensus 160 ~~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~ 239 (398)
T PRK03244 160 PLPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQ 239 (398)
T ss_pred CCCCCceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhh
Confidence 1222232 25555543 36788999889999999987 27999999999999998643332 11
Q ss_pred -CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 273 -YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 273 -~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
.....+ +.||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.+.
T Consensus 240 ~~~~~pD--i~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~------------- 302 (398)
T PRK03244 240 HDGVTPD--VVTLAKGLG-GGLPIGACLAF-GPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASE------------- 302 (398)
T ss_pred hhCCCCC--EEEEchhhh-CCcccEEEEEc-HHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhc-------------
Confidence 111122 358899999 99999999997 888888876555568899999999999998854332
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--ccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGL--FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
...++++++++.+.+.|++++. +...+ ..++++|+.++. ....+.+.+.++||.+.+.
T Consensus 303 ~~~~~~~~~~~~l~~~L~~~~~~~~~~v~--------------g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~----- 363 (398)
T PRK03244 303 GLLENAERLGEQLRAGIEALGHPLVDHVR--------------GRGLLLGIVLTAPVAKAVEAAAREAGFLVNAV----- 363 (398)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCceeeEe--------------eccEEEEEEEeccHHHHHHHHHHHCCeEEeec-----
Confidence 2445666777778888887531 11111 233478998853 3566788888999999883
Q ss_pred CCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 429 SPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
..+.+|++++ .+++++++++++|++++
T Consensus 364 ~~~~iR~~p~~~~t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 364 APDVIRLAPPLIITDAQVDAFVAALPAIL 392 (398)
T ss_pred CCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 2578999965 38999999999999876
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=218.20 Aligned_cols=293 Identities=12% Similarity=0.084 Sum_probs=193.7
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHH
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQL 175 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~a 175 (456)
+|||+++..+.+.| ...++.. ....+ ...|++..+ ..+|+++|+++++. + .+++++|++++
T Consensus 1 ~~~~~~~~~~~p~~-~~~~a~~--~~~~~---~~~Y~~~~~-----~~~L~~~la~~~g~------~--~~~v~~~g~~a 61 (333)
T PRK10534 1 MIDLRSDTVTRPSR-AMLEAMM--AAPVG---DDVYGDDPT-----VNALQDYAAELSGK------E--AALFLPTGTQA 61 (333)
T ss_pred CcccccccCCCCCH-HHHHHHH--hccCC---CcccCCCHH-----HHHHHHHHHHHhCC------C--eEEEeCchHHH
Confidence 47899988777544 3443211 11222 235643333 48999999999874 2 45677778888
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCCCC-hhhh-hhhcC-CeEeeec------cCcccccc---C------CCeEEEEcC
Q 012785 176 FQAALYALSSQDASEPISVVSAAPYYSS-YPSI-TDCVK-SRLYKWA------GDAKRFNK---D------GPYIELVTS 237 (456)
Q Consensus 176 l~~~~~~l~~~gd~~~~~Vlv~~P~y~~-~~~~-~~~~g-~~~~~~~------~d~~~l~~---~------~~~~i~v~~ 237 (456)
+.+++.+++.+|| +|+++.|+|.. |... +...+ .+.+.++ .|.+.++. . ++++++++|
T Consensus 62 ~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~n 137 (333)
T PRK10534 62 NLVALLSHCERGE----EYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLEN 137 (333)
T ss_pred HHHHHHHhcCCCC----eeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEec
Confidence 8888888899999 99999888853 4322 33444 5555443 34444432 1 478999987
Q ss_pred CCCCCcccchH--------HhhhcCcEEEeeecCCCCC----CCCC---CCCCCCcEEEecCccccCCCCceEE-EEEEe
Q 012785 238 PNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQ----YTSI---TYPADHDLMLFTVSKSTGHAGTRIG-WALVK 301 (456)
Q Consensus 238 P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~----~~~~---~~~~~~~i~i~S~SK~~g~~G~RiG-~l~~~ 301 (456)
|+ ||.+++. +|+++++++|+||+|.... .... ....+ .++.||||.+|++ +| |++++
T Consensus 138 p~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~--~~~~s~SK~~~~~---~G~~~~~~ 210 (333)
T PRK10534 138 TH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCD--SFTICLSKGLGTP---VGSLLVGN 210 (333)
T ss_pred CC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCC--EEEEEeEcCCCCc---ccceEEcC
Confidence 66 5998872 5778899999999976311 0111 11112 3345899988754 78 57775
Q ss_pred CHHHHHHHHHHHhhccCcC--ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 012785 302 DMEVAKKMTKYIELNTIGV--SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL 379 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~--s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 379 (456)
+++++.+++.+.....+. +.+.|.++...|+ + ..+. ++..+++|+.+.+.|++++ +.+.
T Consensus 211 -~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~---~-----------~~~~-~~~~~~~r~~l~~~L~~~g-~~~~-- 271 (333)
T PRK10534 211 -RDYIKRARRWRKMTGGGMRQAGILAAAGLYALK---H-----------NVAR-LQEDHDNAAWLAEQLREAG-ADVM-- 271 (333)
T ss_pred -HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH---h-----------hHHH-HHHHHHHHHHHHHHHHhCC-CccC--
Confidence 999999988876443333 3355666666554 1 1222 2234456788999998874 3333
Q ss_pred CCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 380 PSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 380 ~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
++++||+|++++. +.+.+.+.|+++||.++||. ++|++.. .++|++++++++|++++.
T Consensus 272 ------------~~~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~~~-------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 272 ------------RQDTNMLFVRVGEEQAAALGEYMRERNVLINASP-------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred ------------CCCceEEEEECCchhHHHHHHHHHHcCeeecCCc-------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 3345599999864 45677899999999999863 5788765 389999999999998763
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=216.94 Aligned_cols=319 Identities=14% Similarity=0.114 Sum_probs=212.6
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
.++.+|||..+++ .+.+++.+.+.... .+..-......|....|. .....+++++++++++ .++.|++++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~g~-~~~~~~l~~~la~~~~-------~~~~i~~~~ 107 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQ-AARRYGAGSGGSRLVTGN-SPAHEALEEELAEWFG-------AERALLFSS 107 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHH-HHHhcCCCCCCcCcccCC-cHHHHHHHHHHHHHhC-------CCcEEEECc
Confidence 5678999999875 33344444443221 111100000112222220 0003566666666664 245666666
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc----C--CCeEEEEcCCCCCCc
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK----D--GPYIELVTSPNNPDG 243 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~----~--~~~~i~v~~P~NPtG 243 (456)
|+ +++..++..++++|| .|++++|+|+.+...++..|.+++.++. |.+.++. . ++.++++++++||||
T Consensus 108 g~-~~~~~~l~~~~~~gd----~V~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G 182 (385)
T PRK05958 108 GY-AANLAVLTALAGKGD----LIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDG 182 (385)
T ss_pred HH-HHHHHHHHHhCCCCC----EEEEeCccCHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCC
Confidence 65 555667788899999 9999999999999999988998877654 4454432 1 346677777899999
Q ss_pred ccch-----HHhhhcCcEEEeeecCCCCCCC--C--C-----CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 244 SVRQ-----SVVNRSGGILVHDLAYYWPQYT--S--I-----TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 244 ~~~~-----~l~~~~~~~iI~De~y~~~~~~--~--~-----~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
...+ ++|+++|+++|+||+|....+. + . ....+++|+++||||.+|.+| ||++++ +++.+.+
T Consensus 183 ~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g~~~~~-~~~~~~~ 258 (385)
T PRK05958 183 DLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---AAVLGS-ETLIDYL 258 (385)
T ss_pred CcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---cEEEcC-HHHHHHH
Confidence 8765 3899999999999999632111 1 1 122457899999999999777 999886 8888877
Q ss_pred HHHHh-h-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 310 TKYIE-L-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 310 ~~~~~-~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
.+... . .+.+.++..+.++.++|+.+. +. +..+++++++++.+.+.|++.+ +.+..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~aa~~aal~~~~-----------~~-~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~------- 318 (385)
T PRK05958 259 INRARPFIFTTALPPAQAAAARAALRILR-----------RE-PERRERLAALIARLRAGLRALG-FQLMDSQ------- 318 (385)
T ss_pred HHhCccceecCCCCHHHHHHHHHHHHHHh-----------cC-HHHHHHHHHHHHHHHHHHHHcC-CCcCCCC-------
Confidence 65432 1 223455655556667776321 11 4567889999999999998864 3333333
Q ss_pred cccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 388 GRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
++|+|+.++. +...+.+.|+++||.+.++..+. .+++++||++. .+++++++++++|++++
T Consensus 319 -------~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 319 -------SAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred -------CCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 3367888764 34567788889999999865542 23579999997 38999999999999875
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=219.64 Aligned_cols=271 Identities=14% Similarity=0.107 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.+|++++. +.+++++|+++++..++.++.++|| +|+++.+.|......++..|++++.++.
T Consensus 53 ~~~~~e~lA~~~g~--------~~~~i~~g~~~a~~~~~~~l~~~gd----~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~ 120 (370)
T TIGR02539 53 IHDFLEDLAEFLGM--------DEARVTHGAREGKFAVMHALCKEGD----WVVLDGLAHYTSYVAAERAGLNVKEVPHT 120 (370)
T ss_pred HHHHHHHHHHHhCC--------CceEEECChHHHHHHHHHHhhCCCC----EEEECCcccHHHHHHHHHcCCEEEEEecC
Confidence 36788889999874 3567799999999999999999999 9999988866555778889999887765
Q ss_pred -------Ccccccc----------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCC
Q 012785 221 -------DAKRFNK----------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADH 277 (456)
Q Consensus 221 -------d~~~l~~----------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~ 277 (456)
|.+.++. .++++|++++|+||||...+ ++|+++|+++|+||+|..... +.. ...+.
T Consensus 121 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~-~~~~~~~~~ 199 (370)
T TIGR02539 121 GHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRM-PVSAKEIGA 199 (370)
T ss_pred CcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCc-CCCHHHcCC
Confidence 4444422 14679999999999999876 388999999999999986321 211 12356
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC--------cCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI--------GVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~--------~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
+++++||||.++ +|.|+||++++ +++++.++.......+ ......+.++.+.+.. ..++
T Consensus 200 di~v~s~sK~~~-~~g~~G~l~~~-~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-----------~~~~ 266 (370)
T TIGR02539 200 DFIVGSGHKSMA-ASGPCGVLGMS-EEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH-----------VVER 266 (370)
T ss_pred CEEEeeCccccc-CCCCEEEEEEC-HHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH-----------HHHH
Confidence 788999999999 67899999996 8999988776532111 1111144444444541 1345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEE
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKIL 419 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~ 419 (456)
+++.++.++.+ +.+.+.|++++ +.+.. +.++.++|++++++. ....+.+.|+++||.
T Consensus 267 l~~~~~~~~~~-~~l~~~L~~~g-~~~~~-----------~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~ 333 (370)
T TIGR02539 267 VKRWDEEVKKT-RWFVAELEDIG-FIQLG-----------QKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIH 333 (370)
T ss_pred HHHHHHHHHHH-HHHHHHHHhCC-cEEEc-----------cCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCc
Confidence 55555555554 57899998875 33311 113445688887652 123588899999997
Q ss_pred -eecCCCCCCCCCeEEEEec-CChhHHHHHHHHHHhhhC
Q 012785 420 -TRSGKHFGFSPKYVRISML-DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 -v~pg~~fg~~~~~iRis~~-~~~e~i~~~l~~L~~~l~ 456 (456)
+++| . ++++|+++. .++++++++++.|+++++
T Consensus 334 ~ir~~----~-~~~iRis~~~~t~e~i~~l~~~L~~~~~ 367 (370)
T TIGR02539 334 GIRSG----Q-TKYFKLSVYGLTKEQVEYVVDSFEEIVE 367 (370)
T ss_pred cccCC----c-ceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 6642 2 569999963 399999999999998763
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=216.46 Aligned_cols=305 Identities=12% Similarity=0.083 Sum_probs=197.5
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
.+++|+.+.|+.+.+.+.+.. . . ...+ ....+|++ . ..+|+++++++++. +..+++++| ++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~a~-~-~-~~~~-~~~~~~~~-~------~~~l~~~la~~~~~-------~~~~~~~~G-s~ 66 (353)
T PLN02721 6 RVVDLRSDTVTKPTDAMRAAM-A-N-AEVD-DDVLGYDP-T------ALRLEEEMAKIFGK-------EAALFVPSG-TM 66 (353)
T ss_pred hhhhhhcccccCCCHHHHHHH-H-h-ccCC-CcccCCCH-H------HHHHHHHHHHHhCC-------ceeEEecCc-cH
Confidence 458999999997655444432 1 1 1111 11223433 3 38999999999974 223444455 55
Q ss_pred HHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhh---hhhhcCCeEeeecc------Ccccccc----------CCCeEEE
Q 012785 175 LFQAALYALSS-QDASEPISVVSAAPYYSSYPS---ITDCVKSRLYKWAG------DAKRFNK----------DGPYIEL 234 (456)
Q Consensus 175 al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~~~------d~~~l~~----------~~~~~i~ 234 (456)
++.+++.++.. +|| +|++++|+|..... .+...|.+++.++. |.+.++. .++++++
T Consensus 67 a~~~~l~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 142 (353)
T PLN02721 67 GNLISVLVHCDVRGS----EVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLIC 142 (353)
T ss_pred HHHHHHHHHccCCCC----eEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEE
Confidence 56677777776 899 99999999854433 56777888877664 3343332 2568888
Q ss_pred EcC-CCCCCcccch--------HHhhhcCcEEEeeecCCCCCC--CCCC---CCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 235 VTS-PNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY--TSIT---YPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 235 v~~-P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~--~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
+++ ||||||.+++ ++|+++|+++|+|++|..... .+.. ...+...++.|+||.++. ++||+++
T Consensus 143 l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~ 219 (353)
T PLN02721 143 LENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIV 219 (353)
T ss_pred EeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEe
Confidence 866 5889999876 268999999999999863211 1111 111334667789998873 4687443
Q ss_pred eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCC
Q 012785 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PEL 379 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 379 (456)
.++++++.+...+.....+.+...+.++..+.. .+++++++++. .++++.+.+.|++++++.+ ..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~~ 286 (353)
T PLN02721 220 GSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA------------LQENVPKLEDD-HKKAKLLAEGLNQIKGLRVNVAA 286 (353)
T ss_pred cCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH------------HHHHHHHHHHH-HHHHHHHHHHHHhCCCcEEecCC
Confidence 358998887776653333333333333332222 12344444333 5667889999988755532 111
Q ss_pred CCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHh
Q 012785 380 PSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSK 453 (456)
Q Consensus 380 ~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~ 453 (456)
+.++|+|++++. +.+.+.+.|.++||.++|+. .+++|++++ .+++++++++++|++
T Consensus 287 -------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~-----~~~lR~~~~~~~~~~~i~~~~~~l~~ 348 (353)
T PLN02721 287 -------------VETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGN-----SSRIRVVTHHQISDSDVQYTLSCFQQ 348 (353)
T ss_pred -------------ccceEEEEEccCCccccHHHHHHHHHhCCcEEecCC-----CceEEEEecCcCCHHHHHHHHHHHHH
Confidence 223378888853 46778888889999999963 568999986 289999999999998
Q ss_pred hhC
Q 012785 454 ILS 456 (456)
Q Consensus 454 ~l~ 456 (456)
++.
T Consensus 349 ~~~ 351 (353)
T PLN02721 349 AAL 351 (353)
T ss_pred Hhh
Confidence 763
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=220.01 Aligned_cols=268 Identities=16% Similarity=0.155 Sum_probs=189.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---C----CCCCCCcEEEEeCCCCCChhhhhhhcCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---S----QDASEPISVVSAAPYYSSYPSITDCVKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~----~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~ 214 (456)
..+|++.++++++. +++++++|+++++.++++++. . +++ +|++.+|+|+.+...+...+..
T Consensus 71 ~~~l~~~la~~~g~--------~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~----~vi~~~~~yh~~~~~~~~~~~~ 138 (379)
T TIGR00707 71 QEELAEKLVEHSGA--------DRVFFCNSGAEANEAALKLARKYTGDKGKEKK----KIIAFENSFHGRTMGALSATGQ 138 (379)
T ss_pred HHHHHHHHHhhCCC--------CEEEEeCCcHHHHHHHHHHHHHHhhccCCCCC----eEEEECCCcCCccHHHHHhcCC
Confidence 36777778777642 489999999999999998663 2 256 9999999999988777665543
Q ss_pred Ee-------------eec-cCcccccc---CCCeEEEEcCCCCCCccc-ch--------HHhhhcCcEEEeeecCCCCCC
Q 012785 215 LY-------------KWA-GDAKRFNK---DGPYIELVTSPNNPDGSV-RQ--------SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 215 ~~-------------~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~-~~--------~l~~~~~~~iI~De~y~~~~~ 268 (456)
.. .++ .|.+.++. .++++++++.++||+|.. ++ ++|+++++++|+||+|.+..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~ 218 (379)
T TIGR00707 139 PKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGR 218 (379)
T ss_pred hhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 21 011 04444433 256788885556666754 33 278999999999999986433
Q ss_pred CC--CC----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 269 TS--IT----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 269 ~~--~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
.+ .. ....+ +.||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.++|+.+..
T Consensus 219 ~g~~~~~~~~~~~~d---~~t~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~----- 288 (379)
T TIGR00707 219 TGKFFAYEHYGIEPD---IITLAKGLG-GGVPIGATLAK-EEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEK----- 288 (379)
T ss_pred cchhhhHHhcCCCCC---EEEEccccc-CCcccEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----
Confidence 21 11 11122 347999999 99999999996 89998887755556788899999999998874322
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS 422 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p 422 (456)
...+++++++++.+.+.|++... .... ...++.++|+|++++.+...+.+.|.++||.+.|
T Consensus 289 --------~~~~~~~~~~~~~~~~~l~~~~~-~~~~----------~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 349 (379)
T TIGR00707 289 --------ERLLENVKEKGDYFKERLEELGK-NYPN----------KEVRGKGLMLGIELEAPCKDIVKKALEKGLLVNC 349 (379)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHh-hCCC----------CccccCceEEEEEecCcHHHHHHHHHHCCcEEee
Confidence 13455666777777777765421 1100 0011234588998865667788889999999998
Q ss_pred CCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 423 GKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 423 g~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+. .+++|++++ .+++++++++++|++++
T Consensus 350 ~~-----~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 350 AG-----PKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred CC-----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 42 579999964 48999999999998864
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=221.01 Aligned_cols=269 Identities=10% Similarity=0.094 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC---------CCCCCCcEEEEeCCCCCChhhhhhhc-C
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS---------QDASEPISVVSAAPYYSSYPSITDCV-K 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~---------~gd~~~~~Vlv~~P~y~~~~~~~~~~-g 212 (456)
.+|.+.++++.+ .+.+++++++++|++.+++.+.. +|.. +|+..+-+|++....+... +
T Consensus 85 ~~l~~~l~~~~~--------~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~---~ii~~~~~~HG~~~~~~~~~~ 153 (396)
T PRK04073 85 GPWYEKVAKLTG--------KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKA---EIIACEGNFHGRTMAAVSLSS 153 (396)
T ss_pred HHHHHHHHhcCC--------CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCC---EEEEECCCcCCCCHHHHhhcC
Confidence 456666665532 35899999999999999997742 2321 7999988899876443322 1
Q ss_pred --------------CeEeeeccCcccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCC
Q 012785 213 --------------SRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWP 266 (456)
Q Consensus 213 --------------~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~ 266 (456)
...++++ |.+.++. .+++++++++|+||||.+++ ++|+++|+++|.||+|.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~ 232 (396)
T PRK04073 154 EEEYKRGFGPMLPGIKKIPYG-DLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGL 232 (396)
T ss_pred CcccccCCCCCCCCceEeCCC-CHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCC
Confidence 1222222 4555543 36788889889999999876 2799999999999999965
Q ss_pred CCCC--CC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 267 QYTS--IT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 267 ~~~~--~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
.+.+ .. ...+...-+.+|||.+|.+|+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.+.
T Consensus 233 g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~----- 306 (396)
T PRK04073 233 GRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAAN-RDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEE----- 306 (396)
T ss_pred CcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhc-----
Confidence 4332 11 11121222456899999888999999996 899988876555578899999999999999854322
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcC--CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEee
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSG--LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTR 421 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~ 421 (456)
...++.+++++++.+.|++++ .+...+ +.++|++++++...+.+.+.|.++||.+.
T Consensus 307 --------~l~~~~~~~~~~l~~~L~~l~~~~i~~~~--------------~~g~~~~~~~~~~~~~~~~~l~~~Gv~~~ 364 (396)
T PRK04073 307 --------KLPERSLELGEYFKEQLKEIDNPMIKEVR--------------GRGLFIGVELNEPARPYCEALKEEGLLCK 364 (396)
T ss_pred --------CHHHHHHHHHHHHHHHHHhhcCCccccee--------------cceEEEEEEecchHHHHHHHHHHCCeEEe
Confidence 234556677888888887753 122222 23347888886556677788889999998
Q ss_pred cCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhhC
Q 012785 422 SGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 422 pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l~ 456 (456)
+. ++++|||+ +..++|++++++++|+++++
T Consensus 365 ~~-----~~~~iRi~p~l~~t~e~i~~~~~~l~~~l~ 396 (396)
T PRK04073 365 ET-----HETVIRFAPPLVITKEELDWAFEKIKAVLS 396 (396)
T ss_pred cC-----CCCEEEEECCcccCHHHHHHHHHHHHHHhC
Confidence 72 25799999 44699999999999999874
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=217.50 Aligned_cols=316 Identities=12% Similarity=0.150 Sum_probs=223.2
Q ss_pred hcCCCCeEEecCCCC--CCCchh---HhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCc
Q 012785 90 QDGGERIINVDHGDP--TMYEKY---WQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENH 164 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p--~~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~ 164 (456)
+..+..++.|.+++| |+.++. .+... +..++..+. ..|.+..| .++|+++++++++. +
T Consensus 7 ~~~g~n~~~l~~~~v~iDlltds~t~ams~~-~~~a~~~gd---~~Y~~~~g-----~~~Leeaia~~~g~--------~ 69 (431)
T cd00617 7 KEAGYNVFLLRSEDVYIDLLTDSGTGAMSDY-QWAAMMLGD---EAYAGSKS-----FYDLEDAVQDLFGF--------K 69 (431)
T ss_pred HHcCCCEEeCCCCCcCCCCCCCCCcHHHHHH-HHHHHHhCC---CccCCCCC-----HHHHHHHHHHHHCC--------C
Confidence 567788999999999 777663 11111 111223332 25988888 49999999999964 5
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc----------------Ccccccc-
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG----------------DAKRFNK- 227 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~----------------d~~~l~~- 227 (456)
++++|+|+++|+.+++.+++++|| .| +++|+|..+...+...|++++.++. |.+.++.
T Consensus 70 ~vv~t~~Gt~Al~la~~al~~pGD----~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~ 144 (431)
T cd00617 70 HIIPTHQGRGAENILFSILLKPGR----TV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKL 144 (431)
T ss_pred eEEEcCCHHHHHHHHHHHhCCCCC----EE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHH
Confidence 899999999999999999999999 77 6999999999999999998875544 3333332
Q ss_pred --C----CCeEEEEcCCCCCC-cccch--------HHhhhcCcEEEeeecCCC----------CCCCCCCCCCCCcEEEe
Q 012785 228 --D----GPYIELVTSPNNPD-GSVRQ--------SVVNRSGGILVHDLAYYW----------PQYTSITYPADHDLMLF 282 (456)
Q Consensus 228 --~----~~~~i~v~~P~NPt-G~~~~--------~l~~~~~~~iI~De~y~~----------~~~~~~~~~~~~~i~i~ 282 (456)
. ++++|++++||||+ |.+++ ++|+++|++||+|++... +++... ...+.++.++
T Consensus 145 I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~-si~ei~~e~~ 223 (431)
T cd00617 145 IDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDK-SIAEIAREMF 223 (431)
T ss_pred hCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCC-CHHHHHHHhh
Confidence 1 26789999999998 88875 389999999999999431 111111 1123456688
Q ss_pred cCccccCCCCce------EEEEEEeCHHHHHHHHHHH----hhccCcCChHHHHHH-HHHHHhhhCCCCCCCCcchhHHH
Q 012785 283 TVSKSTGHAGTR------IGWALVKDMEVAKKMTKYI----ELNTIGVSKDSQLRA-AKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 283 S~SK~~g~~G~R------iG~l~~~~~~~~~~l~~~~----~~~~~~~s~~~q~~a-~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
|+||.+.++|+| .||+++++++++++++... ...+.+.-..-|..+ +..|+ +. .+ .+
T Consensus 224 s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~---e~--------~~-~~ 291 (431)
T cd00617 224 SYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLR---EA--------VE-ED 291 (431)
T ss_pred ccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHH---hc--------cc-HH
Confidence 999999999988 5699998667999887542 112223222333333 33554 21 01 23
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-----------cHHHHHHHHHhCCEEe
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-----------EIEDCESFLKGNKILT 420 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----------~~~~~~~~l~~~gI~v 420 (456)
.+.++++ +++++.+.|.+.+ +.+..|.|++ |+|++++. +...+.+++++.||.+
T Consensus 292 ~l~~~~~-~r~~l~~~L~~~G-~~v~~P~Ggh-------------~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~ 356 (431)
T cd00617 292 YLRHRVE-QVRYLGDRLDEAG-VPIVEPAGGH-------------AVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRA 356 (431)
T ss_pred HHHHHHH-HHHHHHHHHHHCC-CCccCCCcce-------------EEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeE
Confidence 3444444 5588999999886 7788889988 89998752 3455678999999997
Q ss_pred ec-CCC-CCC----------CCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 421 RS-GKH-FGF----------SPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 421 ~p-g~~-fg~----------~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
.. |+. ++. .-+.+|+++.+ +.++++...+.|..++
T Consensus 357 ~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~ 406 (431)
T cd00617 357 VELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALY 406 (431)
T ss_pred EeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHH
Confidence 54 442 121 13689999874 8899999999998775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=218.04 Aligned_cols=283 Identities=16% Similarity=0.101 Sum_probs=199.0
Q ss_pred ccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh
Q 012785 131 FSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC 210 (456)
Q Consensus 131 y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~ 210 (456)
|+...+ ..+|++++|++++. ++.|++++|... ...++.+++++|| .|++++|+|+.+...++.
T Consensus 142 ~g~~~~-----~~ele~~lA~~~g~-------~~ai~~~~G~~a-n~~~i~al~~~Gd----~Vi~d~~~h~s~~~~~~~ 204 (489)
T PLN02483 142 GGTTKL-----HRELEELVARFVGK-------PAAIVFGMGYAT-NSTIIPALIGKGG----LIISDSLNHNSIVNGARG 204 (489)
T ss_pred cCCcHH-----HHHHHHHHHHHhCC-------CcEEEECCHHHH-HHHHHHHhCCCCC----EEEEcchhhHHHHHHHHH
Confidence 555545 58999999999974 568888887654 4477788999999 999999999999999999
Q ss_pred cCCeEeeecc-Ccccccc----------CC-----CeEEEEcC-CCCCCcccch-----HHhhhcCcEEEeeecCCCC--
Q 012785 211 VKSRLYKWAG-DAKRFNK----------DG-----PYIELVTS-PNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-- 266 (456)
Q Consensus 211 ~g~~~~~~~~-d~~~l~~----------~~-----~~~i~v~~-P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-- 266 (456)
.|++++.++. |.+.++. .+ .+++++++ ..|++|.+.+ ++|+++++++|+||+|...
T Consensus 205 ~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~ 284 (489)
T PLN02483 205 SGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAV 284 (489)
T ss_pred cCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCcc
Confidence 9999988875 3333321 11 25455545 4699998866 4899999999999999621
Q ss_pred CC-----CCCC--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC--cCChHHHHHHHHHHHhhhC
Q 012785 267 QY-----TSIT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI--GVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 267 ~~-----~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~--~~s~~~q~~a~~~L~~~~~ 337 (456)
+. .... ...+.+|+++||||++|++| ||++++ +++++.++.......+ ..++....++.+.|+.+..
T Consensus 285 G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G---G~i~~~-~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~ 360 (489)
T PLN02483 285 GKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG---GYIAGS-KELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILG 360 (489)
T ss_pred CCCCCchHHhcCCCcccCcEEEEecchhcccCc---eEEEcC-HHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHh
Confidence 11 1111 12467899999999999877 999986 9999999876432112 2233333345555654332
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC--ccHHHHHHHHHh
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--QEIEDCESFLKG 415 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~l~~ 415 (456)
.. ..++..+.+++++++++.+.+.|++++ +.+..+.++. .+|+.+. .....+.+.|.+
T Consensus 361 ~~------g~~~~~~~~~~l~~~~~~l~~~L~~~G-~~v~~~~~sp-------------~~~l~l~~~~~~~~~~~~Ll~ 420 (489)
T PLN02483 361 ED------GTNRGAQKLAQIRENSNFFRSELQKMG-FEVLGDNDSP-------------VMPIMLYNPAKIPAFSRECLK 420 (489)
T ss_pred Cc------cccchHHHHHHHHHHHHHHHHHHHHCC-CcccCCCCCC-------------EEEEEECCHHHHHHHHHHHHH
Confidence 20 123445567889999999999999874 4444333332 4555442 234456677778
Q ss_pred CCEEeecCCCCCC---CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 416 NKILTRSGKHFGF---SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 416 ~gI~v~pg~~fg~---~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+||.+.| ..|.. ..+.+|++++. ++|++++++++|++++
T Consensus 421 ~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~ 464 (489)
T PLN02483 421 QNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVG 464 (489)
T ss_pred CCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 9999997 56632 34789999875 8999999999999874
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=207.86 Aligned_cols=275 Identities=13% Similarity=0.151 Sum_probs=194.2
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP-- 205 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~-- 205 (456)
.+.|+++. ..+|++++|++.+. + ..++++|+++++.+++ .++.+|| +|++++|+|+...
T Consensus 46 y~r~~~pt------~~~le~~la~l~g~------~--~~~~~~sG~~ai~~~~-~ll~~Gd----~Vl~~~~~y~~t~~~ 106 (366)
T PRK08247 46 YSRTGNPT------RGVLEQAIADLEGG------D--QGFACSSGMAAIQLVM-SLFRSGD----ELIVSSDLYGGTYRL 106 (366)
T ss_pred ccCCCCch------HHHHHHHHHHHhCC------C--cEEEEcCHHHHHHHHH-HHhCCCC----EEEEecCCcCcHHHH
Confidence 34567666 48999999999874 2 3466777789999876 5778999 9999999999753
Q ss_pred --hhhhhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCC
Q 012785 206 --SITDCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITY 273 (456)
Q Consensus 206 --~~~~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~ 273 (456)
..++..|+++..++. |.+.++. .++++|++++|+||+|...+ ++|+++|+++|+|++|..+- ..++
T Consensus 107 ~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-- 184 (366)
T PRK08247 107 FEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-- 184 (366)
T ss_pred HHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch--
Confidence 344568998887775 4555543 36899999999999998755 37899999999999996421 1222
Q ss_pred CCCCcEEEecCccccCC-CCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 274 PADHDLMLFTVSKSTGH-AGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~-~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
..+.+|+++|+||.++- ++++.||++++++++.+++...+.......+++.|.++...|+ .+..
T Consensus 185 ~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~---------------tl~~ 249 (366)
T PRK08247 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMK---------------TLAL 249 (366)
T ss_pred hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccC---------------cHHH
Confidence 34568999999999963 4679999998657888888888776677788888887777655 2333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccc-cCC-CCcccccccccCCCCCceEEeecCccHHHHHHHH-------------HhCC
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSV-PEL-PSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFL-------------KGNK 417 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l-------------~~~g 417 (456)
..++.+++++.+.+.|++++.+.. ..| .|++ |.| .++. .+...+.+ ..+.
T Consensus 250 r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~-------------~sf-~~~~-~~~~~~~~~~l~~~~~~~slg~~~s 314 (366)
T PRK08247 250 RMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGM-------------LSF-RLQD-EEWVNPFLKSLKLITFAESLGGVES 314 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcE-------------EEE-EECC-HHHHHHHHHcCCcceEccCCCCCce
Confidence 445679999999999999876553 333 6776 555 5542 22222111 2345
Q ss_pred EEeecCCCCC------------CCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFG------------FSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg------------~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+.+.|++.+. ..++.+|+|++. |+.+.+++.|.+.|
T Consensus 315 l~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl--E~~~dl~~dl~~al 362 (366)
T PRK08247 315 FITYPATQTHADIPEEIRIANGVCNRLLRFSVGI--ENVEDLIADLKQAF 362 (366)
T ss_pred EEECCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHH
Confidence 6667875542 235789999864 34445555555544
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=212.76 Aligned_cols=271 Identities=16% Similarity=0.150 Sum_probs=192.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 219 (456)
..+|++++|++++. ++.|++++|+ +++..++..+.. +|+ .|+++.+.|..+...++..|.++..++
T Consensus 93 ~~~Le~~la~~~g~-------~~~i~~~sG~-~a~~~~i~~l~~~~~g~----~vi~~~~~h~s~~~~~~~~g~~~~~~~ 160 (410)
T PRK13392 93 HVLLERELADLHGK-------ESALLFTSGY-VSNDAALSTLGKLLPGC----VILSDALNHASMIEGIRRSGAEKQVFR 160 (410)
T ss_pred HHHHHHHHHHHhCC-------CCEEEECcHH-HHHHHHHHHHhcCCCCC----EEEEehhhhHHHHHHHHHcCCeEEEEe
Confidence 37899999999863 4678888885 667777776643 777 888877777777677787888876654
Q ss_pred c-Ccccc----c---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CCCCCCC---CCCCC-c
Q 012785 220 G-DAKRF----N---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQYTSIT---YPADH-D 278 (456)
Q Consensus 220 ~-d~~~l----~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~~~~~~---~~~~~-~ 278 (456)
. |.+.+ + ..++++|++++|+||||.+++ ++|+++++++|+||+|.. +...++. ...++ +
T Consensus 161 ~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~d 240 (410)
T PRK13392 161 HNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRID 240 (410)
T ss_pred CCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCc
Confidence 3 22222 2 136789999999999999877 388999999999999982 1111221 11233 5
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
++++||||.||++| ||++++ +++++.+++.... .+.+.+++.|.++.++|+.+.. ....++.
T Consensus 241 iv~~tlsK~~g~~G---G~~~~~-~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~------------~~~~~~~ 304 (410)
T PRK13392 241 MIQGTLAKAFGCLG---GYIAAS-ADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKT------------SQTERDA 304 (410)
T ss_pred EEEEEChHhhhccc---chhhcC-HHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhc------------CHHHHHH
Confidence 88999999999998 999985 8999988876532 2445666788888888874321 2345677
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHH-HhCCEEeecCCCCC--CCCC
Q 012785 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFL-KGNKILTRSGKHFG--FSPK 431 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l-~~~gI~v~pg~~fg--~~~~ 431 (456)
++++++.+.+.|++.+ +.+.++.+. |+.+.++. ....+.+.| +++||.++++.... .+..
T Consensus 305 ~~~~~~~l~~~L~~~g-~~~~~~~~~--------------~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~ 369 (410)
T PRK13392 305 HQDRVAALKAKLNANG-IPVMPSPSH--------------IVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTE 369 (410)
T ss_pred HHHHHHHHHHHHHHcC-CCCCCCCCC--------------EEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCc
Confidence 8899999999998864 444433333 44344432 334566655 57899999865332 2457
Q ss_pred eEEEEec--CChhHHHHHHHHHHhhh
Q 012785 432 YVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
++||++. .++++++.+++.|++++
T Consensus 370 ~lRis~~~~~t~edid~l~~aL~~~~ 395 (410)
T PRK13392 370 RLRITPTPLHDDEDIDALVAALVAIW 395 (410)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999985 48999999999998874
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=207.68 Aligned_cols=204 Identities=13% Similarity=0.127 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCC----CChhhhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYY----SSYPSITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y----~~~~~~~~~~g~~~~~ 217 (456)
..+|++++|++.+. +..+++++| ++++..++.+++++|| +|+++.|.| ..+...++..|+++..
T Consensus 47 ~~~L~~~lA~l~g~-------~~~v~~~sG-~~ai~~~l~al~~~Gd----~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~ 114 (376)
T PRK06460 47 VLELTKKIVELENA-------EMGVAFSSG-MGAISTTALALLKPGN----SVLVHRDMFGRSYRFFTDYLKNWGVNVDA 114 (376)
T ss_pred HHHHHHHHHHHhCC-------CcEEEeCCH-HHHHHHHHHHHhCCCC----EEEEecCCcCcHHHHHHHHHHhhCcEEEE
Confidence 48999999999864 235666555 6899999999999999 999998655 4455677888999887
Q ss_pred eccCcccc----ccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAGDAKRF----NKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~d~~~l----~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++.+.+.+ ...++++|++++||||||.+++ ++|+++|+++|+|++|..+ ....+...+.+++++|+||.+
T Consensus 115 ~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~-~~~~~l~~~~divv~S~sK~l 193 (376)
T PRK06460 115 SNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTP-INQKPLELGADIVVHSASKFL 193 (376)
T ss_pred ECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcc-ccCChhhcCCCEEEeecceec
Confidence 77653322 2346799999999999999988 3788999999999999854 111112235689999999998
Q ss_pred C-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 G-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+ +.|.|+||++++ +++++++++.+.....+.++..+ ..+++ + .++++..++++.++++.+.+.
T Consensus 194 ~G~~~~~~G~~~~~-~~l~~~l~~~~~~~g~~~~~~~a---~~~l~----~--------~~~l~~r~~~~~~n~~~l~~~ 257 (376)
T PRK06460 194 AGHNDVIAGLAAGY-GKLLNVIDQMRRTLGTSLDPHAA---YLTLR----G--------IKTLKIRMDVINRNAEQIAEF 257 (376)
T ss_pred cCCCCceEEEEecC-HHHHHHHHHHHHhcCCCCCHHHH---HHHHh----c--------hhhHHHHHHHHHHHHHHHHHH
Confidence 5 335789999986 89999998877655555555433 33333 1 356778888999999999999
Q ss_pred HHhcCCc
Q 012785 368 VQKSGLF 374 (456)
Q Consensus 368 L~~~~~~ 374 (456)
|++++.+
T Consensus 258 L~~~p~v 264 (376)
T PRK06460 258 LEGHPKV 264 (376)
T ss_pred HHcCCCc
Confidence 9988654
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-24 Score=204.40 Aligned_cols=313 Identities=16% Similarity=0.183 Sum_probs=221.7
Q ss_pred hcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
...+-.+.+|||.+|.+... ++++.....+.++ .+|.++. .+|.+.+++... ..+.|+++
T Consensus 47 f~~Giav~~lGH~hP~iv~a--l~~Q~~kl~h~sn----~~~~~~~-------~~la~~L~~~s~-------~~d~vff~ 106 (404)
T COG4992 47 FAAGIAVNNLGHCHPALVEA--LKEQAEKLWHVSN----LFYNEPQ-------AELAEKLVELSP-------FADRVFFC 106 (404)
T ss_pred eccceeeeccCCCCHHHHHH--HHHHHHHhhhccc----ccCChHH-------HHHHHHHHhhCc-------cccEEEEc
Confidence 45667889999999876543 3433222222222 1344433 456565555542 14799999
Q ss_pred cCHHHHHHHHHHHhcCCCC-CCCcEEEEeCCCCCChhhhhhhcCCeE---------------eeeccCcccccc---CCC
Q 012785 170 TGSTQLFQAALYALSSQDA-SEPISVVSAAPYYSSYPSITDCVKSRL---------------YKWAGDAKRFNK---DGP 230 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd-~~~~~Vlv~~P~y~~~~~~~~~~g~~~---------------~~~~~d~~~l~~---~~~ 230 (456)
|+++||++.+++...+.+. .+..+|+...-+|++....+-.++.+. ++|. |.++++. +++
T Consensus 107 NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-Di~al~~ai~~~t 185 (404)
T COG4992 107 NSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-DIEALEAAIDEDT 185 (404)
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-CHHHHHHHhccCe
Confidence 9999999999998754332 122289999999999887666654433 2232 6666553 377
Q ss_pred eEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCCC-----CCcEEEecCccccCCCCceEE
Q 012785 231 YIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYPA-----DHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~~-----~~~i~i~S~SK~~g~~G~RiG 296 (456)
.+|++..-|...|+..+ ++|+++|+++|.||++.+.+.++-.... ..+ |.++.|.+| .|++||
T Consensus 186 aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PD--I~tlaK~Lg-GG~Pig 262 (404)
T COG4992 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPD--ILTLAKALG-GGFPIG 262 (404)
T ss_pred EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCC--EEEeecccc-CCccce
Confidence 89999777888888876 3899999999999999987777643222 223 556899999 999999
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
.+++. +.+.+.+....+.+|+|.++++..++.+.|+.+.+ ++.+++.++.-..-++.|.+...+.+.+.-
T Consensus 263 A~la~-~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~---------e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~ 332 (404)
T COG4992 263 AMLAT-EEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE---------EGLLENVREKGEYLLQRLRELKRRYPLVKE 332 (404)
T ss_pred eeEEc-hhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc---------hhHHHHHHHHHHHHHHHHHHHhhcCCceee
Confidence 99996 77788888888889999999999999999997755 345555444443344444443333344455
Q ss_pred cCCCCcccccccccCCCCCceEEeecCcc--HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHH
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLS 452 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~ 452 (456)
.+..|. ++-+.+..+ ..++.+.++++|+++.+ .+++.+|+.-. .++|++++++++|+
T Consensus 333 vRG~GL--------------miGiel~~~~~a~~~~~~~~~~gvL~~~-----a~~~ViR~~PpL~i~~eei~~~~~~l~ 393 (404)
T COG4992 333 VRGRGL--------------MIGIELKEPYRARDIVRALREEGVLVLP-----AGPNVIRFLPPLVITEEEIDEALDALE 393 (404)
T ss_pred eeccee--------------EEEEEecCcccHHHHHHHHHHCCeEEec-----CCCCeEEecCCccCCHHHHHHHHHHHH
Confidence 555554 477787654 68899999999999998 45789999843 49999999999999
Q ss_pred hhh
Q 012785 453 KIL 455 (456)
Q Consensus 453 ~~l 455 (456)
+++
T Consensus 394 ~~l 396 (404)
T COG4992 394 RAL 396 (404)
T ss_pred HHH
Confidence 876
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=208.20 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCC----hhhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSS----YPSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~ 214 (456)
.++|+++|++++. .++++|++|+|+++++++++.++ .++|| +|+++++.|+. +...++..|++
T Consensus 70 ~~~r~~la~~~~~-----~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~ 140 (406)
T PRK09295 70 ENVRKQAALFINA-----RSAEELVFVRGTTEGINLVANSWGNSNVRAGD----NIIISEMEHHANIVPWQMLCARVGAE 140 (406)
T ss_pred HHHHHHHHHHcCc-----CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcC----EEEECcchhhHHHHHHHHHHHHcCcE
Confidence 6788888888863 13579999999999999998874 57888 99999988764 45556778998
Q ss_pred EeeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 215 LYKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 215 ~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
++.++.+ .+.++. .+++++++++|+||||.+++ ++|+++|+++|+|++|.... .++. ...+.++
T Consensus 141 v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~-~~~~~~~~~~D~ 219 (406)
T PRK09295 141 LRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMH-HPVDVQALDCDF 219 (406)
T ss_pred EEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCc-cccCchhcCCCE
Confidence 8877653 334432 36799999999999999987 37889999999999997532 2222 2345679
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHH----------------------hhccCcCChHHHHHHHHHHHhhhC
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI----------------------ELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~----------------------~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
+++|++|.+|.+| +||++++ +++.+.+.... .......+.....++.++++.+.+
T Consensus 220 ~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~ 296 (406)
T PRK09295 220 YVFSGHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSA 296 (406)
T ss_pred EEeehhhccCCCC--cEEEEEc-hHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 9999999988666 7999997 77766543210 111224555566666677664322
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhC
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGN 416 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~ 416 (456)
.-++..+++.++.++.+.+.|++++++.+..+.. . ...+-+.++. +.+++.+.|.++
T Consensus 297 ----------~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~-----------~-~~iv~~~~~~~~~~~~~~~L~~~ 354 (406)
T PRK09295 297 ----------LGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN-----------R-LGVIAFNLGKHHAYDVGSFLDNY 354 (406)
T ss_pred ----------hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-----------C-ceEEEEEECCcCHHHHHHHHHhC
Confidence 1245667778888888899888876555544320 0 1123344543 456778889999
Q ss_pred CEEeecCCCCCC-------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 417 KILTRSGKHFGF-------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 gI~v~pg~~fg~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
||.++.|..+.. .++++|+|+.. ++||++.+++.|+++.
T Consensus 355 gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 355 GIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred CeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 999999886531 24689999874 8899999999998764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=207.48 Aligned_cols=280 Identities=17% Similarity=0.196 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCCh----hhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSY----PSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~----~~~~~~~g~~ 214 (456)
.++|+.++++++. .++++|++|+|+++++++++.++ .++|| +|+++++.|+.. ...++..|++
T Consensus 65 ~~~r~~ia~~~~~-----~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~----~vl~~~~~~~s~~~~~~~~~~~~g~~ 135 (403)
T TIGR01979 65 EAVREKVAKFINA-----ASDEEIVFTRGTTESINLVAYSWGDSNLKAGD----EIVISEMEHHANIVPWQLLAERTGAT 135 (403)
T ss_pred HHHHHHHHHHhCc-----CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCC----EEEECcchhhHHHHHHHHHHHhcCcE
Confidence 6888999998864 12568999999999999998875 46788 999999987763 3455677998
Q ss_pred EeeeccCc------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 215 LYKWAGDA------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 215 ~~~~~~d~------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
+..++.|. +.++. .+++++++++|+||||.+++ ++|+++|+++|+|++|.... .++. ...+.++
T Consensus 136 ~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~-~~~~~~~~~~d~ 214 (403)
T TIGR01979 136 LKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPH-MPVDVQALDCDF 214 (403)
T ss_pred EEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCc-cccCccccCCCE
Confidence 87776543 33332 36789999999999999987 37889999999999997532 2221 2345789
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh---------------------hccCcCChHHHHHHHHHHHhhhCC
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---------------------LNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~---------------------~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
+++|++|.+|.+| +|+++++ +++++.+..... ......+.....++.+.++.+.+
T Consensus 215 ~~~s~~K~~gp~G--~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~- 290 (403)
T TIGR01979 215 YVFSGHKMYGPTG--IGVLYGK-EELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEA- 290 (403)
T ss_pred EEEecccccCCCC--ceEEEEc-hHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHH-
Confidence 9999999998777 8999996 777766532110 00112344455555666653221
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCC
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNK 417 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~g 417 (456)
.-+++.+++..+.++.+.+.|++++++++..|... ...++++.+.++. +..++.+.|+++|
T Consensus 291 ---------~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~L~~~g 352 (403)
T TIGR01979 291 ---------IGLENIEAHEHELTAYALERLGEIPGLRIYGPRDA---------EDRGGIISFNVEGVHPHDVGTILDEEG 352 (403)
T ss_pred ---------hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc---------cccCceEEEEeCCcCHHHHHHHHhhCC
Confidence 12456778888888899998988766665543210 0112345555643 4567788899999
Q ss_pred EEeecCCCC--------CCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHF--------GFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~f--------g~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|.+++|..+ + .++++|||+.. ++++++.+++.|++++
T Consensus 353 I~v~~g~~~~~~~~~~~~-~~~~iRiS~~~~~t~~di~~l~~~l~~~~ 399 (403)
T TIGR01979 353 IAVRSGHHCAQPLMRRFG-VPATCRASFYIYNTEEDIDALVEALKKVR 399 (403)
T ss_pred EEEcchhhhhHHHHHHhC-CCCEEEEEeccCCCHHHHHHHHHHHHHHH
Confidence 999988743 2 26799999874 8899999999998875
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=207.52 Aligned_cols=207 Identities=13% Similarity=0.120 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh-----hhcCCeEe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-----DCVKSRLY 216 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~-----~~~g~~~~ 216 (456)
..+|++.+|++++. +.+++++|+++++.+++.+++++|| +|+++.|.|+.+...+ +..|.++.
T Consensus 78 ~~~LE~~lA~l~g~--------~~~l~~~sG~~Ai~~al~al~~~GD----~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~ 145 (418)
T PLN02242 78 VLNLGRQMAALEGT--------EAAYCTASGMSAISSVLLQLCSSGG----HVVASNTLYGGTHALLAHFLPRKCNITTT 145 (418)
T ss_pred HHHHHHHHHHHhCC--------CeEEEEccHHHHHHHHHHHHhCCCC----EEEEcCCcHHHHHHHHHHhhhhccCceEE
Confidence 47999999999863 4678899999999999999999999 9999999999887654 34687776
Q ss_pred eecc-Ccccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc
Q 012785 217 KWAG-DAKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 217 ~~~~-d~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK 286 (456)
.++. |.+.++. . ++++|++++|+||||.+.+ ++|+++++++|+|++|....+.+. ..+.+|+++||||
T Consensus 146 ~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~~~~--~~g~divv~S~SK 223 (418)
T PLN02242 146 FVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSPA--RLGADVVVHSISK 223 (418)
T ss_pred EcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCCCHH--HcCCcEEEEeCcc
Confidence 6655 4555543 2 4899999999999999976 378999999999999974333222 2256899999999
Q ss_pred ccCCCCce-EEEEEEeCHHHHHHHHHHHh--hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 287 STGHAGTR-IGWALVKDMEVAKKMTKYIE--LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 287 ~~g~~G~R-iG~l~~~~~~~~~~l~~~~~--~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
.++.+|.| .||++++ +++++.++..+. ....|.+...|.++..++. .+.+...+++++++++.
T Consensus 224 ~l~g~g~~~gG~iv~~-~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~-------------l~tl~~r~~~~~~~a~~ 289 (418)
T PLN02242 224 FISGGADIIAGAVCGP-AELVNSMMDLHHGALMLLGPTMNPKVAFELSER-------------LPHLSLRMKEHCRRAME 289 (418)
T ss_pred ccCCCCCceEEEEEcC-HHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC-------------CCcHHHHHHHHHHHHHH
Confidence 99888987 5999986 889998887754 2345666777777766554 12455567789999999
Q ss_pred HHHHHHhcCCcccc
Q 012785 364 LRMAVQKSGLFSVP 377 (456)
Q Consensus 364 l~~~L~~~~~~~~~ 377 (456)
+.+.|++++ +.+.
T Consensus 290 la~~L~~~~-~~V~ 302 (418)
T PLN02242 290 YAKRMKELG-LKVI 302 (418)
T ss_pred HHHHHHhCC-CEEE
Confidence 999999985 4444
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-23 Score=202.72 Aligned_cols=264 Identities=15% Similarity=0.092 Sum_probs=180.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh---hhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS---ITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~ 218 (456)
..++++.++++++ + +++++++|+++++..+++++.++|| +|+++.|+|..... .....|++++.+
T Consensus 34 ~~~l~~~~a~~~g-------~-~~~~~~~~gt~a~~~~~~~l~~~gd----~v~~~~~~~~~~~~~~~~~~~~g~~~~~v 101 (338)
T cd06502 34 TAKLEARAAELFG-------K-EAALFVPSGTAANQLALAAHTQPGG----SVICHETAHIYTDEAGAPEFLSGVKLLPV 101 (338)
T ss_pred HHHHHHHHHHHhC-------C-CeEEEecCchHHHHHHHHHhcCCCC----eEEEecCcceeeecCCcHHHHcCceEEee
Confidence 4788998988885 2 3677777778999999999999999 99999999876443 345578888776
Q ss_pred cc-----Ccccccc----------CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCC----CCCCC
Q 012785 219 AG-----DAKRFNK----------DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWP----QYTSI 271 (456)
Q Consensus 219 ~~-----d~~~l~~----------~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~----~~~~~ 271 (456)
+. |.+.++. .+++++++++|||| |.+++ ++|+++|+++|+||+|... ...++
T Consensus 102 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~ 180 (338)
T cd06502 102 PGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVAL 180 (338)
T ss_pred cCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCH
Confidence 54 4444432 15789999999998 54434 2678899999999998421 00111
Q ss_pred C-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 272 T-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 272 ~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
. ...+..+++.|+||.+|++| |++++.++++++++...... .+.+.+.+.+.++...|+ ++ .
T Consensus 181 ~~~~~~~d~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~---~~---------~ 245 (338)
T cd06502 181 KTYKSGVDSVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALE---ND---------L 245 (338)
T ss_pred HHHHhcCCEEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhc---Cc---------h
Confidence 1 11234577889999999887 55443348899988876532 234456677777777775 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHH------HhCCEEeec
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFL------KGNKILTRS 422 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l------~~~gI~v~p 422 (456)
+ .+..+++.++++++.+.|++++. ... ++.++|+.++.+.......+++ .++|+.+.+
T Consensus 246 ~-~~~~~~~~~~~~~l~~~L~~~~~-~~~--------------~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~ 309 (338)
T cd06502 246 W-LRRLRHDHEMARRLAEALEELGG-LES--------------EVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYA 309 (338)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcCC-Ccc--------------cccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEe
Confidence 2 23446677778899999988753 222 2344566666643322222222 268999987
Q ss_pred CCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 423 GKHFGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 423 g~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.. .+++|++... +++++++++++|+++
T Consensus 310 ~~-----~~~lRi~~~~~~~~~~i~~~~~~l~~~ 338 (338)
T cd06502 310 WG-----EGGVRFVTHWDTTEEDVDELLSALKAV 338 (338)
T ss_pred cC-----CCeEEEEeecCCCHHHHHHHHHHHhcC
Confidence 42 3899999863 889999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=200.26 Aligned_cols=287 Identities=16% Similarity=0.165 Sum_probs=195.9
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI 207 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~ 207 (456)
..+|+++. ..+|++++|++. . ++.|++++| ++++..++.+++++|| +|++++|+|..+...
T Consensus 45 y~ry~~p~------~~~Le~~lA~l~-~-------~~~v~~~sG-~~Ai~~~l~all~~Gd----~Vl~~~~~y~~~~~~ 105 (366)
T PRK07582 45 YGRASNPT------WRALEAALGELE-G-------AEALVFPSG-MAAITAVLRALLRPGD----TVVVPADGYYQVRAL 105 (366)
T ss_pred eECCCCcc------HHHHHHHHHHHc-C-------CCEEEECCH-HHHHHHHHHHhcCCCC----EEEEeCCCcHhHHHH
Confidence 34577765 589999999988 2 345666555 5799999999999999 999999999988765
Q ss_pred h----hhcCCeEeeeccCccc-cccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCC
Q 012785 208 T----DCVKSRLYKWAGDAKR-FNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPAD 276 (456)
Q Consensus 208 ~----~~~g~~~~~~~~d~~~-l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~ 276 (456)
+ +..|++++.++.+.+. ....+++++++++|+||||.+.+ ++|+++|+++|+|++|..+ ...++. .+
T Consensus 106 ~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~--~g 183 (366)
T PRK07582 106 AREYLAPLGVTVREAPTAGMAEAALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE--LG 183 (366)
T ss_pred HHHHHhcCeEEEEEECCCChHHHhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh--cC
Confidence 5 3468888888765322 22246789999999999998765 3788999999999999632 222332 23
Q ss_pred CcEEEecCcccc-CCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 277 HDLMLFTVSKST-GHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 277 ~~i~i~S~SK~~-g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
.+++++|+||.+ |++|+|+||++++++++.++++..+.......+++.+..+...|+ .+....+
T Consensus 184 ~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~---------------tl~~R~~ 248 (366)
T PRK07582 184 ADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLG---------------TLGLRFA 248 (366)
T ss_pred CcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc---------------cHHHHHH
Confidence 468999999988 567899999998668899999888776677788888877776665 2334446
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC----
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG---- 427 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg---- 427 (456)
+..++...+.+.|++++.+.....+|.- .....+.....+..+-++++ +.+.+.+.+.+.++... +..+|
T Consensus 249 ~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~~~~~~~~~~~l~~~~~-~~s~G~~~s 326 (366)
T PRK07582 249 RQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-DAAAAERFVAASRLVVA-ATSFGGVHT 326 (366)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-CHHHHHHHHHhCCccee-cccCCCccc
Confidence 6678888999999988755432211100 00111111123334566675 46667777777776553 22222
Q ss_pred -----------CCCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 428 -----------FSPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 428 -----------~~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
..++.||+|+... +.+.+++.|.+.
T Consensus 327 l~~~~~~~~~~~~~~liR~svGlE--~~~dli~dl~~a 362 (366)
T PRK07582 327 SADRRARWGDAVPEGFVRLSCGIE--DTDDLVADLERA 362 (366)
T ss_pred hhhhHHHcCCCCCCCeEEEEeccC--CHHHHHHHHHHH
Confidence 1346899999652 223344444443
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=200.69 Aligned_cols=213 Identities=15% Similarity=0.160 Sum_probs=167.1
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI 207 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~ 207 (456)
.++|+++. ..+|++++|++.+. +.+++++|+++++.+++.+++++|| +|++++|+|+.....
T Consensus 46 Y~R~~~pt------~~~L~~~lA~l~g~--------~~~i~~~sg~~Ai~~~l~~l~~~GD----~Vl~~~~~y~~~~~~ 107 (386)
T PRK08045 46 YSRRGNPT------RDVVQRALAELEGG--------AGAVLTNTGMSAIHLVTTVFLKPGD----LLVAPHDCYGGSYRL 107 (386)
T ss_pred eeCCCCcc------HHHHHHHHHHHhCC--------CeEEEECCHHHHHHHHHHHHcCCCC----EEEEcCCCcHHHHHH
Confidence 34677766 48999999999862 3699999999999999999999999 999999999964433
Q ss_pred hhh----cCCeEeeec-cCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCC
Q 012785 208 TDC----VKSRLYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITY 273 (456)
Q Consensus 208 ~~~----~g~~~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~ 273 (456)
+.. .|.++..++ .|.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+.. .++
T Consensus 108 ~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl-- 185 (386)
T PRK08045 108 FDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL-- 185 (386)
T ss_pred HHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch--
Confidence 322 234544443 34555543 36799999999999999987 378899999999999986432 223
Q ss_pred CCCCcEEEecCccccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 274 PADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
...-+++++|+||.++ +++++.|++++.++++.++++..+.....+.+++.+..+...|+ .+..
T Consensus 186 ~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~---------------tl~~ 250 (386)
T PRK08045 186 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---------------TLVP 250 (386)
T ss_pred hhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc---------------cHHH
Confidence 2234699999999985 77889999988668898988877777788899999998888776 2556
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
.+++..++...+.+.|++++.+.
T Consensus 251 R~~~~~~na~~la~~L~~~p~v~ 273 (386)
T PRK08045 251 RMELAQRNAQAIVKYLQTQPLVK 273 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEe
Confidence 77788888999999999987654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=206.22 Aligned_cols=271 Identities=17% Similarity=0.179 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc-CCCCCCCcEEEEeCCCCCChhhhhhhc-CCe-----
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS-SQDASEPISVVSAAPYYSSYPSITDCV-KSR----- 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~----- 214 (456)
..++++.+++++.... +.+.+++++++++++..+++... .+|+. +|++.++.|++........ +..
T Consensus 69 ~~~~~~~la~~l~~~~----~~~~~~~~~sG~~a~~~A~~~a~~~~g~~---~vi~~~~~~Hg~~~~~~~~~~~~~~~~~ 141 (377)
T PRK02936 69 TNSLQEEVASLLAENS----AGDLVFFCNSGAEANEAALKLARKHTGKS---KIVTFEQSFHGRTFGTMSATGQEKIKEG 141 (377)
T ss_pred CCHHHHHHHHHHHhcC----CCCEEEEeCCcHHHHHHHHHHHHHhcCCC---eEEEECCCcCCCcHHhhhccCCcccccc
Confidence 3678888998886421 12579999999999999998653 23431 7999999999765433222 211
Q ss_pred -------Eeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC--
Q 012785 215 -------LYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT-- 272 (456)
Q Consensus 215 -------~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~-- 272 (456)
+..++. |.+.++. .+++++++..+++++|.... ++|+++|+++|+||+|.+..+.+..
T Consensus 142 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~ 221 (377)
T PRK02936 142 FGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFA 221 (377)
T ss_pred CCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhH
Confidence 112221 4444443 35788889888999887743 2899999999999999864433211
Q ss_pred ---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 273 ---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 273 ---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
...+.+ +.||||.++ +|+|+||++++ +++.+.+.......+++.+++.|.++.++|+.+.. +++
T Consensus 222 ~~~~~~~~d--i~t~sK~l~-~G~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---------~~~ 288 (377)
T PRK02936 222 YEQFGLDPD--IVTVAKGLG-NGIPVGAMIGK-KELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ---------PSF 288 (377)
T ss_pred HHhhCCCCc--EEEEccccc-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---------ccH
Confidence 011122 447999999 99999999996 89998887655556788999999999999985422 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCC
Q 012785 350 FEFTNHQMSTRWKQLRMAVQK----SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~ 425 (456)
+++++++.+.+.+.|++ .+.+....+. |+ ++|++++.+.+.+.+.++++||.+.|+
T Consensus 289 ----~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~-------------~~~i~~~~~~~~~~~~l~~~gv~v~~~-- 348 (377)
T PRK02936 289 ----LEEVQEKGEYFLQKLQEELEHLECVKNIRGK-GL-------------MIGIECTEEVAPVIEQLREEGLLVLSA-- 348 (377)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhCCcEEeEeec-ce-------------EEEEEecchHHHHHHHHHHCCeEEecC--
Confidence 34455566666666654 2222111222 23 799998755677888899999999984
Q ss_pred CCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 426 FGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
+.+++||++ ..+++++++++++|++++
T Consensus 349 ---g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 349 ---GPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred ---CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 257999995 459999999999998865
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=200.82 Aligned_cols=213 Identities=16% Similarity=0.170 Sum_probs=163.1
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI 207 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~ 207 (456)
.++|+++. ..+|++++|++.+ .+++++|+|+++++.+++.+++++|| +|+++.|+|......
T Consensus 45 Y~R~~~p~------~~~le~~lA~l~g--------~~~v~~~~gg~~Ai~~~l~all~~GD----~Vl~~~p~y~~~~~~ 106 (382)
T TIGR02080 45 YSRSGNPT------RDLLQQALAELEG--------GAGAVVTNTGMSAIHLVTTALLGPDD----LLVAPHDCYGGTYRL 106 (382)
T ss_pred ccCCCCch------HHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCC----EEEEcCCCcHHHHHH
Confidence 35677766 4899999999885 25799999999999999999999999 999999999975543
Q ss_pred hhh----cCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCC
Q 012785 208 TDC----VKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITY 273 (456)
Q Consensus 208 ~~~----~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~ 273 (456)
+.. .|.++..++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+.. .++
T Consensus 107 ~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl-- 184 (382)
T TIGR02080 107 LNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL-- 184 (382)
T ss_pred HHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch--
Confidence 332 2445444432 4444543 36899999999999999987 378899999999999985422 222
Q ss_pred CCCCcEEEecCccccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 274 PADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
..+-+++++|+||.++ ++|++.|++++.++++.++++..+.......+++.+..+...++ .+..
T Consensus 185 ~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~---------------tl~~ 249 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR---------------TLVA 249 (382)
T ss_pred hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc---------------hHHH
Confidence 1234699999999885 68899999988668899999888777778888888776655443 3333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
..++..++...+.+.|+.++.++
T Consensus 250 R~~~~~~na~~~a~~L~~~p~v~ 272 (382)
T TIGR02080 250 RMRLQQRNAQAIVEYLQTQPLVK 272 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCee
Confidence 46667788889999999887554
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=199.34 Aligned_cols=280 Identities=12% Similarity=0.085 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~~ 220 (456)
.++++.++++++. .+++.+++++|+++++.+++.++..+|| +|+++.|+|+. +...++..|.+++.++.
T Consensus 35 ~~~~~~la~~~g~-----~~~~~~~~~~~~t~al~~~~~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 105 (356)
T cd06451 35 DEILEGLRYVFQT-----ENGLTFLLSGSGTGAMEAALSNLLEPGD----KVLVGVNGVFGDRWADMAERYGADVDVVEK 105 (356)
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEecCcHHHHHHHHHHhCCCCC----EEEEecCCchhHHHHHHHHHhCCCeEEeec
Confidence 4677777777753 1334678899999999999999999999 99999988765 45677888988877654
Q ss_pred C------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecC
Q 012785 221 D------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTV 284 (456)
Q Consensus 221 d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~ 284 (456)
| .+.++. .+++++++++|+||||.+++ ++|+++|+++|+|++|.... .++. ...+.++++.|.
T Consensus 106 ~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~-~~~~~~~~~~d~~~~s~ 184 (356)
T cd06451 106 PWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGG-EPFRMDEWGVDVAYTGS 184 (356)
T ss_pred CCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccC-ccccccccCccEEEecC
Confidence 4 333332 26789999999999999987 37889999999999876321 1121 122446788899
Q ss_pred ccccCCCCceEEEEEEeCHHHHHHHHH---HHh----------------hccCcCChHHHHHHHHHHHhhhCCCCCCCCc
Q 012785 285 SKSTGHAGTRIGWALVKDMEVAKKMTK---YIE----------------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSE 345 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~~~~l~~---~~~----------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~ 345 (456)
+|.++.| .++||++++ +++++.+.. ... ....+.+...+.++.++++.+.
T Consensus 185 ~K~l~~p-~g~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~--------- 253 (356)
T cd06451 185 QKALGAP-PGLGPIAFS-ERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL--------- 253 (356)
T ss_pred chhccCC-CCcceeEEC-HHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHH---------
Confidence 9999844 468999996 888777753 000 1112234444555556665322
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-CEEeec
Q 012785 346 DECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-KILTRS 422 (456)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-gI~v~p 422 (456)
...+++..++.+++++.+.+.|.+.+ +++..+.... .+.+.|+.++. +.+.+.+.|.++ ||.+++
T Consensus 254 -~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~ 321 (356)
T cd06451 254 -EEGLENRWARHRRLAKALREGLEALG-LKLLAKPELR----------SPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAG 321 (356)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCcccC----------CCceEEEECCCCCCHHHHHHHHHHhCCEEEec
Confidence 23456677888899999999998864 4443221111 11245676653 456777788777 999999
Q ss_pred CCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 423 GKHFGFSPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 423 g~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
|..+. .+++||++++. ++|++++++++|+++++
T Consensus 322 g~~~~-~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 322 GLGPT-AGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred ccccc-cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 87543 35799999964 79999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=202.31 Aligned_cols=272 Identities=13% Similarity=0.083 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA 222 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~ 222 (456)
.+++++++++++. +++++|+|+++++.+++.+++.+|| +|+++.|+|......++..|++++.++.|.
T Consensus 47 ~~l~~~la~~~g~--------~~i~~~~g~t~al~~~l~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 114 (361)
T cd06452 47 KDFHHDLAEFLGM--------DEARVTPGAREGKFAVMHSLCEKGD----WVVVDGLAHYTSYVAAERAGLNVREVPNTG 114 (361)
T ss_pred HHHHHHHHHHcCC--------ceEEEeCCHHHHHHHHHHHhcCCCC----EEEEcCCcchHHHHHHHhcCCEEEEEecCC
Confidence 6888888888863 5899999999999999999999999 999999988877777888999998776553
Q ss_pred c--------cccc----------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCc
Q 012785 223 K--------RFNK----------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHD 278 (456)
Q Consensus 223 ~--------~l~~----------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~ 278 (456)
+ .++. .+++++++++|+||||...+ ++|+++|+++|+|++|..... ++. ...+.+
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~-~~~~~~~~~d 193 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRM-PVSGKELGAD 193 (361)
T ss_pred CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCc-CCCHHHcCCC
Confidence 2 2211 25789999999999999866 378899999999999984321 121 223568
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc------cC--cCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN------TI--GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~------~~--~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
++++|+||.++ ++.|+||++++ +++++++.+.+... .. ......+..+.+.++. ..+++
T Consensus 194 ~~~~s~~K~l~-~~~~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-----------~~~~~ 260 (361)
T cd06452 194 FIVGSGHKSMA-ASAPIGVLATT-EEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH-----------VKERV 260 (361)
T ss_pred EEEecCCcccc-CCCCeEEEEEC-HHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHH-----------HHHHH
Confidence 99999999998 56699999996 88888886654310 01 1111123333343431 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEEe
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKILT 420 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~v 420 (456)
++..+. .++++.+.+.|++++++++..+. ++.++|+.++.+. ....+.+.|+++||.+
T Consensus 261 ~~~~~~-~~~~~~l~~~L~~l~g~~v~~~~-----------~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~ 328 (361)
T cd06452 261 KRWDEE-VEKARWFVAELEKIEGIKQLGEK-----------PKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHG 328 (361)
T ss_pred HHHHHH-HHHHHHHHHHHhcCCCeEEECCC-----------CCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceE
Confidence 333333 33457888999888555543211 1234455555431 1235778888899995
Q ss_pred ecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhhC
Q 012785 421 RSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKILS 456 (456)
Q Consensus 421 ~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l~ 456 (456)
.. .+ ..+++|++... ++|+++.+++.|+++++
T Consensus 329 ~~---~~-~~~~~ri~~~g~~~e~~~~l~~al~~~~~ 361 (361)
T cd06452 329 IK---PG-LTRYFKLSTYGLTWEQVEYVVDAFKEIAE 361 (361)
T ss_pred Ec---CC-CceEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 32 12 25689999844 89999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=199.65 Aligned_cols=271 Identities=17% Similarity=0.210 Sum_probs=194.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.++++++. ++.|++++| ++++..++.+++++|| +|++++|+|+.+...++..|++++.++.
T Consensus 48 ~~~l~~~la~~~~~-------~~~iv~~sg-~~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 115 (349)
T cd06454 48 HEELEEELAEFHGK-------EAALVFSSG-YAANDGVLSTLAGKGD----LIISDSLNHASIIDGIRLSGAKKRIFKHN 115 (349)
T ss_pred HHHHHHHHHHHhCC-------CCEEEeccH-HHHHHHHHHHhcCCCC----EEEEehhhhHHHHHHHHHcCCceEEecCC
Confidence 46788888888753 235555544 6788888888889999 9999999999998888999998877643
Q ss_pred Ccccccc--------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCC----C---CC-CCCCCcE
Q 012785 221 DAKRFNK--------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYT----S---IT-YPADHDL 279 (456)
Q Consensus 221 d~~~l~~--------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~----~---~~-~~~~~~i 279 (456)
|.+.++. .+++++++++|+||||...+ ++|+++|+++|+|++|...... . +. ...+.++
T Consensus 116 ~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i 195 (349)
T cd06454 116 DMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDI 195 (349)
T ss_pred CHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcE
Confidence 4343321 24678888999999999876 3899999999999999631111 1 11 2346789
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc--cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN--TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~--~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
+++|+||.++.+| ||++.+ +++.+.+....... ....++..+.++.+.|+.+ .+ .+..++++
T Consensus 196 ~~~s~sK~~~~~g---G~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----------~~-~~~~~~~~ 259 (349)
T cd06454 196 IMGTLGKAFGAVG---GYIAGS-KELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL-----------QG-GPERRERL 259 (349)
T ss_pred EEeechhhhcccC---CEEECC-HHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH-----------hc-CHHHHHHH
Confidence 9999999998655 999986 88888776653322 2346666677777777632 12 34567889
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC--ccHHHHHHHHHhCCEEeecCCCCC--CCCCeE
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--QEIEDCESFLKGNKILTRSGKHFG--FSPKYV 433 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~l~~~gI~v~pg~~fg--~~~~~i 433 (456)
+++++.+.+.|++.+ +....+.+++ +.++.++ .+.+++.+.|.++||.+.++.... ...+++
T Consensus 260 ~~~~~~l~~~l~~~g-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~i 325 (349)
T cd06454 260 QENVRYLRRGLKELG-FPVGGSPSHI-------------IPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARL 325 (349)
T ss_pred HHHHHHHHHHHHhcC-CcccCCCCCc-------------EEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeE
Confidence 999999999998864 3333332322 3444343 245678888888899999863221 135799
Q ss_pred EEEecC--ChhHHHHHHHHHHhh
Q 012785 434 RISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 434 Ris~~~--~~e~i~~~l~~L~~~ 454 (456)
|++++. +++++++++++|+++
T Consensus 326 Ri~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 326 RISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHh
Confidence 999974 899999999999874
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=198.35 Aligned_cols=280 Identities=13% Similarity=0.138 Sum_probs=198.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCC-CCC-hhhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPY-YSS-YPSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~-y~~-~~~~~~~~g~~~~~~~ 219 (456)
..++|+.++++++. +. ....|+++.|+++++..++..+..++| ++++..+. |+. +...++..|.+++.++
T Consensus 33 ~~~~~~~la~~~~~---~~-~~~~i~~~~~gt~~l~~~~~~~~~~~~----~vi~~~~~~~~~~~~~~a~~~g~~~~~i~ 104 (355)
T TIGR03301 33 TDQVRDRLLALAGG---DD-NHTCVLLQGSGTFAVEATIGSLVPRDG----KLLVLINGAYGERLAKICEYLGIPHTDLN 104 (355)
T ss_pred HHHHHHHHHHHhcC---CC-CCcEEEEeCCcHHHHHHHHHhccCCCC----eEEEECCCchhhHHHHHHHHcCCceEEEe
Confidence 36888888888864 11 112688899999999999999988887 76665554 443 4567788899888665
Q ss_pred cC------cccccc-----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 220 GD------AKRFNK-----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 220 ~d------~~~l~~-----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
.+ .+.++. .+.+++++++++||||...+ ++|+++++++|+|+++.... .++. ...+.+++++
T Consensus 105 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~-~~~~~~~~~~d~~~~ 183 (355)
T TIGR03301 105 FSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGA-IPIDIEELDVDALIA 183 (355)
T ss_pred cCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCC-cccchhhcCccEEEe
Confidence 43 334432 23567778899999999987 47899999999998766322 2221 2346679999
Q ss_pred cCcccc-CCCCceEEEEEEeCHHHHHHHHHHH-----------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 283 TVSKST-GHAGTRIGWALVKDMEVAKKMTKYI-----------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 283 S~SK~~-g~~G~RiG~l~~~~~~~~~~l~~~~-----------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
|++|.+ |++| +||++++ +++++.+.... ....++++...+.++.++++.+.+
T Consensus 184 s~~K~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~------- 253 (355)
T TIGR03301 184 SANKCLEGVPG--FGFVIAR-RDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEA------- 253 (355)
T ss_pred cCCcccccCCc--eeEEEEC-HHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHH-------
Confidence 999986 5566 6999997 88887765210 112346777788887777775432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEe
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILT 420 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v 420 (456)
+..+++.+++++++++++.+.|++++ +.+..+.. . ..+.++|+.++. +.+.+.+.|.++||.+
T Consensus 254 --~g~~~~~~~~~~~~~~~~~~~L~~~g-~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i 320 (355)
T TIGR03301 254 --EGGVPARIARYRRNRELLVDGLRALG-FQPLLPER-W---------QSPIIVSFLYPDDPDFDFDDFYQELKERGFVI 320 (355)
T ss_pred --cccHHHHHHHHHHHHHHHHHHHHHcC-CeeecCCC-C---------CCCcEEEEECCCCCcchHHHHHHHHHHCCEEE
Confidence 12356777888999999999998875 33322211 0 111257787763 3457888899999999
Q ss_pred ecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 421 RSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 421 ~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+|..+. .+++||++.. ++++++++++.|++++
T Consensus 321 ~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 321 YPGKLTL--ADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred ECCcccc--ccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 9987654 3799999754 8999999999999864
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=207.41 Aligned_cols=255 Identities=13% Similarity=0.118 Sum_probs=178.3
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcC-------------CeEeeecc-Cc
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVK-------------SRLYKWAG-DA 222 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g-------------~~~~~~~~-d~ 222 (456)
+.+++++++++|+..+++.... .+.. +|+..+-+|++....+...+ .+...++. |.
T Consensus 98 ~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~---~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 174 (403)
T PRK05093 98 ERVFFANSGAEANEAAFKLARRYACDRHGPEKT---EIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDL 174 (403)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCC---eEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCH
Confidence 5899999999999999986632 1221 79999999998764332211 11222322 55
Q ss_pred ccccc---CCCeEEEEcCCCCCCcccc--h--------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCcc
Q 012785 223 KRFNK---DGPYIELVTSPNNPDGSVR--Q--------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSK 286 (456)
Q Consensus 223 ~~l~~---~~~~~i~v~~P~NPtG~~~--~--------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK 286 (456)
+.++. .++++|+++ |.||+|.++ + ++|+++|+++|+||+|.+..+.+.. ...+-..-+.||||
T Consensus 175 ~~l~~~l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK 253 (403)
T PRK05093 175 AAVKAVIDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAK 253 (403)
T ss_pred HHHHHHhcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecc
Confidence 55543 256677764 888888765 3 3899999999999999864443311 01111111679999
Q ss_pred ccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
+++ +|+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.++ ..++.++++++.+.+
T Consensus 254 ~l~-~G~rig~vv~~-~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~-------------~~~~~~~~~~~~l~~ 318 (403)
T PRK05093 254 ALG-GGFPIGAMLTT-AEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTP-------------EVLEGVKARRQRFVD 318 (403)
T ss_pred ccc-CCcceEEEEEc-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhc-------------cHHHHHHHHHHHHHH
Confidence 999 99999999997 899888876555567889999999999988754322 345778889999999
Q ss_pred HHHhcCC-c-cc-cCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec-
Q 012785 367 AVQKSGL-F-SV-PELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML- 438 (456)
Q Consensus 367 ~L~~~~~-~-~~-~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~- 438 (456)
.|+++.. . .+ ..+.+|+ ++|+.++. ....+...+.++||.+.|+ +.+++|++++
T Consensus 319 ~L~~~~~~~~~~~~~~~~G~-------------~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-----g~~~lRl~~~~ 380 (403)
T PRK05093 319 GLQKINQKYGVFSEIRGMGL-------------LIGAELKPQYKGRARDFLNAAAEEGVMVLVA-----GPDVLRFAPSL 380 (403)
T ss_pred HHHHHHhhCCCeEeEeeCce-------------EEEEEecCcchhHHHHHHHHHHHCCeEEecC-----CCCEEEEeCCC
Confidence 9987521 1 11 1112333 78888753 3455677788899999973 3579999644
Q ss_pred -CChhHHHHHHHHHHhhh
Q 012785 439 -DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 439 -~~~e~i~~~l~~L~~~l 455 (456)
.+++++++++++|++++
T Consensus 381 ~~~~~~i~~~~~~l~~~l 398 (403)
T PRK05093 381 VIEEADIDEGLARFEKAV 398 (403)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 48999999999999876
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=200.52 Aligned_cols=247 Identities=14% Similarity=0.172 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC----hhhhhhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS----YPSITDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~~~~~ 218 (456)
.+|++.+|++.+. ++.+++++| ++++.+++.+++++|| +|+++.|+|.. +...++..|.+++.+
T Consensus 63 ~~Le~~lA~l~g~-------~~~v~~~sG-~~Ai~~~l~all~pGD----~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v 130 (405)
T PRK08776 63 DLLGEALAELEGG-------AGGVITATG-MGAINLVLNALLQPGD----TLVVPHDAYGGSWRLFNALAKKGHFALITA 130 (405)
T ss_pred HHHHHHHHHHhCC-------CceEEEcCH-HHHHHHHHHHHhCCCC----EEEEccCCchHHHHHHHHHHHhcCcEEEEE
Confidence 6888888888752 346665555 7999999999999999 99999999997 344455568888877
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.. .++ ..+-+++++|.+|.+
T Consensus 131 ~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl--~~gaDivv~S~tK~l 208 (405)
T PRK08776 131 DLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL--EFGADLVLHSTTKYI 208 (405)
T ss_pred CCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc--cccCCEEEecCceee
Confidence 65 4555543 36799999999999999966 378899999999999986432 233 234469999999999
Q ss_pred CCC-CceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHA-GTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~-G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+.+ ++..|+++++++++.+++...+.....+.+++.+.++...++ +++...++..++...+.+.
T Consensus 209 ~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~---------------tl~~r~~~~~~na~~la~~ 273 (405)
T PRK08776 209 NGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLR---------------TLDARLRVHQENADAIAAL 273 (405)
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhC---------------cHHHHHHHHHHHHHHHHHH
Confidence 644 688999988778898888877665666778888777765544 5667788888999999999
Q ss_pred HHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCE
Q 012785 368 VQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418 (456)
Q Consensus 368 L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI 418 (456)
|++++.+.....+|.- ....++.....+..+.+.++++.+.+.+.+..-.+
T Consensus 274 L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l 328 (405)
T PRK08776 274 LDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRY 328 (405)
T ss_pred HHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCc
Confidence 9988755422222111 11111122233445666776544444555444433
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=201.56 Aligned_cols=276 Identities=12% Similarity=0.140 Sum_probs=186.0
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh-
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI- 207 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~- 207 (456)
++|+.+. ..+|++++|++.+. +++++++|+++++..++.+++++|| +|+++.|.|+.+...
T Consensus 59 ~r~~~p~------~~~Le~~iA~~~g~--------~~~l~~~sG~~Ai~~al~~ll~~Gd----~Vl~~~~~y~~~~~~~ 120 (400)
T PRK06234 59 SRLGNPT------STEVENKLALLEGG--------EAAVVAASGMGAISSSLWSALKAGD----HVVASDTLYGCTFALL 120 (400)
T ss_pred cCCCCcc------HHHHHHHHHHHhCC--------CcEEEEcCHHHHHHHHHHHHhCCCC----EEEEecCccchHHHHH
Confidence 3455654 48999999999863 3577888888999999999999999 999999999876544
Q ss_pred ---hhhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhc--CcEEEeeecCCCCCCCCCCC
Q 012785 208 ---TDCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS--GGILVHDLAYYWPQYTSITY 273 (456)
Q Consensus 208 ---~~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~--~~~iI~De~y~~~~~~~~~~ 273 (456)
++..|+++..++. |.+.++. .++++|++++|+||||.+.+ ++|+++ ++++|+|++|..+.+. .+.
T Consensus 121 ~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~-~~l 199 (400)
T PRK06234 121 NHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ-RPL 199 (400)
T ss_pred HHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC-Cch
Confidence 4667888887765 4555543 36799999999999999977 378886 9999999999854221 112
Q ss_pred CCCCcEEEecCccccCCCCceE-EEEEEeCHHHHHHHHHH--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 274 PADHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAKKMTKY--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~~l~~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
..+.+|+++|+||.++.+|+|+ ||++++ ++++++++.. ........+++....+...|+ .+
T Consensus 200 ~~g~Divv~S~sK~l~g~g~~~gG~v~~~-~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~---------------tl 263 (400)
T PRK06234 200 QLGADVVVHSATKYLNGHGDVIAGFVVGK-EEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMK---------------TL 263 (400)
T ss_pred hhCCcEEEeeccccccCCCCceeEEEEec-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC---------------cH
Confidence 3356899999999998889876 999986 8888888753 223455667666655555444 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCc----ccccccccCCCCCceEEeecCccH---HHHHHHHHhCCEEeecC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ----FCTFLGRAFEPQPAFAWLKCEQEI---EDCESFLKGNKILTRSG 423 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~----~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~l~~~gI~v~pg 423 (456)
....++..++...+.+.|++++.+.....+|. .+.+.++.....+..+-++++++. ..+.+.|+-.++.+.-|
T Consensus 264 ~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G 343 (400)
T PRK06234 264 QIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLG 343 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCC
Confidence 34455566778888899998765433222221 001111122233445666775432 34445555445444434
Q ss_pred CCC----------------------CCCCCeEEEEecC
Q 012785 424 KHF----------------------GFSPKYVRISMLD 439 (456)
Q Consensus 424 ~~f----------------------g~~~~~iRis~~~ 439 (456)
..+ |..++.||+|++.
T Consensus 344 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl 381 (400)
T PRK06234 344 DAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL 381 (400)
T ss_pred CCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC
Confidence 222 1135789999965
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=205.70 Aligned_cols=278 Identities=12% Similarity=0.090 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCC---hhhhhhhcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSS---YPSITDCVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~---~~~~~~~~g~~~ 215 (456)
.++|+.++++++. ++++|++|+|+++++..++.++. ++|+ +|++..+.|+. +...++..|+++
T Consensus 46 ~~~r~~la~~~g~------~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~----~vv~~~~~h~s~~~~~~~~~~~g~~v 115 (381)
T PRK02948 46 QVCRKTFAEMIGG------EEQGIYFTSGGTESNYLAIQSLLNALPQNKK----HIITTPMEHASIHSYFQSLESQGYTV 115 (381)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCcHHHHHHHHHHHHHHhccCCCC----EEEECCcccHHHHHHHHHHHhCCCEE
Confidence 5778888888764 46799999999999999988885 4677 89998855554 444566678888
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLM 280 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~ 280 (456)
..++.| .+.++. .+++++++++|+||||.+++ ++|+++|+++|+|+++.... .++. ...+.+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~-~~~~~~~~~~d~~ 194 (381)
T PRK02948 116 TEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGK-LPIDVFEMGIDSL 194 (381)
T ss_pred EEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccc-cccCcccCCCCEE
Confidence 776654 333432 35789999999999999988 37899999999997655322 2221 33467899
Q ss_pred EecCccccCCCCceEEEEEEeCHHH-HHHHHH----HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEV-AKKMTK----YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~-~~~l~~----~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
++|++|.+|.+| +|+++++ +++ ...+.. .......+++.+++.++.++++.. .+++++.++
T Consensus 195 ~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~-----------~~~~~~~~~ 260 (381)
T PRK02948 195 SVSAHKIYGPKG--VGAVYIN-PQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI-----------LKNMQEESL 260 (381)
T ss_pred EecHHhcCCCCc--EEEEEEc-CCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 999999999888 8999986 543 111110 011234567888888888888732 346778889
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCC-CcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-----
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF----- 428 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~----- 428 (456)
++++.++.+.+.|++++ +.+.... ..+ + .+..+-+.++. +.+.+...|.++||.+++|..+..
T Consensus 261 ~~~~~~~~l~~~L~~~~-~~v~~~~~~~~------~---~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p 330 (381)
T PRK02948 261 RFKELRSYFLEQIQTLP-LPIEVEGHSTS------C---LPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEP 330 (381)
T ss_pred HHHHHHHHHHHHHhcCC-CCEEEeCCCcc------C---cCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCC
Confidence 99999999999999875 2222111 110 0 01122222332 445566678899999999885311
Q ss_pred -------------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 -------------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 -------------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..+++|+|+.. ++++++.+++.|++++
T Consensus 331 ~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~ 372 (381)
T PRK02948 331 SKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIG 372 (381)
T ss_pred CHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 14789999863 8999999999998875
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=200.83 Aligned_cols=268 Identities=12% Similarity=0.132 Sum_probs=192.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..+|++.+|++++. +.+++++|+++|+..+++++..+|| .|+++.+.|......++..|.+++.+..
T Consensus 101 ~~~le~~la~~~g~--------~~~~~~~sG~~An~~~l~~l~~~g~----~v~~~~~~h~s~~~~~~~~g~~~~~~~~~ 168 (407)
T PRK07179 101 KPQFEKKLAAFTGF--------ESCLLCQSGWAANVGLLQTIADPNT----PVYIDFFAHMSLWEGVRAAGAQAHPFRHN 168 (407)
T ss_pred HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHhCCCCC----EEEEECCcCHHHHHHHHHCCCeEEEecCC
Confidence 47888999999863 3567899999999999999999999 9999999998888888888988877753
Q ss_pred Ccccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC--CC--CCC---CCCCC-cEEEec
Q 012785 221 DAKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ--YT--SIT---YPADH-DLMLFT 283 (456)
Q Consensus 221 d~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~--~~--~~~---~~~~~-~i~i~S 283 (456)
|.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+||+|.... .. ++. ...++ ++++.|
T Consensus 169 d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S 248 (407)
T PRK07179 169 DVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITAS 248 (407)
T ss_pred CHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEee
Confidence 6665543 24688899999999999988 38999999999999997421 11 111 11123 689999
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC-c-CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI-G-VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~-~-~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
+||.+| + |+||++++ +++++.+........+ + .++....++.+.++.+. ..+..++++++++
T Consensus 249 ~sK~~g-~--~~G~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~------------~~~~~~~~l~~~~ 312 (407)
T PRK07179 249 LAKAFA-G--RAGIITCP-RELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIE------------SADDRRARLHANA 312 (407)
T ss_pred chHhhh-c--cCeEEEeC-HHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHh------------cCHHHHHHHHHHH
Confidence 999987 2 69999996 8888777654321112 2 22332233445555321 1235678899999
Q ss_pred HHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC-----CCCCeEE
Q 012785 362 KQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG-----FSPKYVR 434 (456)
Q Consensus 362 ~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg-----~~~~~iR 434 (456)
+++.+.|++++ +.+. .. ++++++.++. ..+.+.+.|.++||.+. .|. ...+++|
T Consensus 313 ~~l~~~L~~~g-~~v~-~~--------------~~i~~l~~~~~~~~~~~~~~L~~~GI~~~---~~~~p~~~~~~~~lR 373 (407)
T PRK07179 313 RFLREGLSELG-YNIR-SE--------------SQIIALETGSERNTEVLRDALEERNVFGA---VFCAPATPKNRNLIR 373 (407)
T ss_pred HHHHHHHHHcC-CCCC-CC--------------CCEEEEEeCCHHHHHHHHHHHHHCCceEe---eecCCCCCCCCceEE
Confidence 99999998874 4333 12 2367777653 44667788899999843 221 1357999
Q ss_pred EEecC--ChhHHHHHHHHHHhhhC
Q 012785 435 ISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 435 is~~~--~~e~i~~~l~~L~~~l~ 456 (456)
|++.. ++++++++++.|+++++
T Consensus 374 is~~~~~t~edi~~~~~~l~~~~~ 397 (407)
T PRK07179 374 LSLNADLTASDLDRVLEVCREARD 397 (407)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHH
Confidence 99975 89999999999998753
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-22 Score=187.58 Aligned_cols=293 Identities=15% Similarity=0.177 Sum_probs=195.9
Q ss_pred ccc-cCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHh-cC--CC------CCCCcEEEEe
Q 012785 129 SYF-SDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYAL-SS--QD------ASEPISVVSA 197 (456)
Q Consensus 129 ~~y-~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l-~~--~g------d~~~~~Vlv~ 197 (456)
..| +...|+ +|+|+..|+.++. ++++|++ +|++-+.++-++... +. .| +.+..+.++|
T Consensus 62 RNY~G~l~Gi-----pe~r~l~a~llgv------~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP 130 (425)
T PF12897_consen 62 RNYPGGLDGI-----PEARELFAELLGV------PPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP 130 (425)
T ss_dssp TSS-S-SS-------HHHHHHHHHHHTS-------GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred cCCCCccCCh-----HHHHHHHHHHhCC------CHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence 468 888896 9999999999986 5677765 455656555444322 11 11 1235699999
Q ss_pred CCCCCChhhhhhhcCCeEeeeccCccccc----------cCCCeEEE-EcCCCCCCcccchH-----Hh----hhcCcEE
Q 012785 198 APYYSSYPSITDCVKSRLYKWAGDAKRFN----------KDGPYIEL-VTSPNNPDGSVRQS-----VV----NRSGGIL 257 (456)
Q Consensus 198 ~P~y~~~~~~~~~~g~~~~~~~~d~~~l~----------~~~~~~i~-v~~P~NPtG~~~~~-----l~----~~~~~~i 257 (456)
.|+|..+..+++.+|++.++++++.++-+ ....|.|+ ++-.+||||.++|+ ++ ...+..|
T Consensus 131 vPGYDRHFai~E~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI 210 (425)
T PF12897_consen 131 VPGYDRHFAITEHFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRI 210 (425)
T ss_dssp ES--HHHHHHHHHCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EE
T ss_pred CCCchHHHHHHHhhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEE
Confidence 99999999999999999999998655432 12456664 44559999999994 33 3589999
Q ss_pred EeeecCCCCCC------CC---C------CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCCh
Q 012785 258 VHDLAYYWPQY------TS---I------TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 258 I~De~y~~~~~------~~---~------~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
+.|++|.--+. .. + ...+++++.+.|.||.. +||..|+++.++ ++.++.+++.....+.|...
T Consensus 211 ~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS-~~Nl~~~~~~~~~~tIgpdK 288 (425)
T PF12897_consen 211 FWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAAS-EANLAWIKKHLSVQTIGPDK 288 (425)
T ss_dssp EEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE--HHHHHHHHHHHHHH-S---H
T ss_pred EeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecC-HHHHHHHHHHhcCceeCccH
Confidence 99999983222 11 1 13578899999999987 599999999997 88888898888888999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-----CCccccCCCCcccccccccCCCCCce
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-----GLFSVPELPSQFCTFLGRAFEPQPAF 397 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~f 397 (456)
+.|..-.++++...++ .++|+++.++.++-+.+.+.+.|++. +..+|..|.||| |
T Consensus 289 vNQLRHvrff~d~~gG-------v~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGY-------------F 348 (425)
T PF12897_consen 289 VNQLRHVRFFKDAEGG-------VRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGY-------------F 348 (425)
T ss_dssp HHHHHHHHHHHSHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS--------------
T ss_pred HHHHHHHHHhcChhhH-------HHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCce-------------E
Confidence 9999999999965423 57899999999999999888888653 357899999999 9
Q ss_pred EEeec-CccHHHHHHHHHhCCEEeec-CCCCC--C--CCCeEEEEecC-ChhHHHHHHHHHHhh
Q 012785 398 AWLKC-EQEIEDCESFLKGNKILTRS-GKHFG--F--SPKYVRISMLD-RDENYNLFVQRLSKI 454 (456)
Q Consensus 398 ~~~~~-~~~~~~~~~~l~~~gI~v~p-g~~fg--~--~~~~iRis~~~-~~e~i~~~l~~L~~~ 454 (456)
++++. ++..+.+.+++++.||.+.| |..|. . .+..|||+-+. +.|+++.+++.+.-.
T Consensus 349 Isld~~~G~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~c 412 (425)
T PF12897_consen 349 ISLDVLDGTAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATC 412 (425)
T ss_dssp EEEEESTT-HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHH
Confidence 99987 55789999999999999999 77773 2 46789999876 789999998887644
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=198.48 Aligned_cols=278 Identities=18% Similarity=0.162 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh-----hhhcCCeEe
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI-----TDCVKSRLY 216 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~-----~~~~g~~~~ 216 (456)
+++++.+++++. .+|.. ...|++++| ++++.+++.++.++|| +|++++|+|+.+... ++..|.++.
T Consensus 64 ~~l~~~~~~~~~~~~g~~---~~~v~~~sg-t~a~~~~l~~l~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~ 135 (402)
T cd00378 64 DEIEDLAIERAKKLFGAE---YANVQPHSG-SQANLAVYFALLEPGD----TIMGLDLSHGGHLTHGSFTKVSASGKLFE 135 (402)
T ss_pred HHHHHHHHHHHHHHhCCC---ceeeecCCc-HHHHHHHHHHhcCCCC----EEEEecCccCccccccccccccccceeEE
Confidence 677776665553 33432 235666654 6999999999999999 999999999877544 556676544
Q ss_pred eecc---------Ccccccc----CCCeEEEEcCCCCCCcccchH---HhhhcCcEEEeeecCC-CCCC---CCCCCCCC
Q 012785 217 KWAG---------DAKRFNK----DGPYIELVTSPNNPDGSVRQS---VVNRSGGILVHDLAYY-WPQY---TSITYPAD 276 (456)
Q Consensus 217 ~~~~---------d~~~l~~----~~~~~i~v~~P~NPtG~~~~~---l~~~~~~~iI~De~y~-~~~~---~~~~~~~~ 276 (456)
.++. |.+.++. .+++++++++|+||+...+.+ +|+++|+++|+|++|+ +..+ .+.... .
T Consensus 136 ~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~ 214 (402)
T cd00378 136 SVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-G 214 (402)
T ss_pred EecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-C
Confidence 3322 3343332 367899999999987655554 7899999999999964 2111 111111 3
Q ss_pred CcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHH-HHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 277 HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQL-RAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 277 ~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~-~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
.+++++|+||.+ +|.|.||++++++++++++.........+.+...+. ++...+.... +...++.++
T Consensus 215 ~dv~~~s~sK~l--~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~~~~~~~~~ 282 (402)
T cd00378 215 ADVVTTTTHKTL--RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEAL----------EPEFKAYAK 282 (402)
T ss_pred CcEEEeccccCC--CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHh----------hHHHHHHHH
Confidence 358899999976 889999999975589998877654334444433333 2233333111 224567778
Q ss_pred HHHHHHHHHHHHHHhcCCcccc-CCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCC----CCC
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVP-ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGK----HFG 427 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~----~fg 427 (456)
+++++++.+.+.|++.+ +.+. .+.+++ |+|++++. +...+.+.|+++||.+.++. .++
T Consensus 283 ~~~~~~~~l~~~L~~~g-~~~~~~~~~~~-------------~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~ 348 (402)
T cd00378 283 QVVENAKALAEALKERG-FKVVSGGTDNH-------------LVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSS 348 (402)
T ss_pred HHHHHHHHHHHHHHhCC-CeEeecCCCCe-------------EEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCC
Confidence 89999999999999874 4443 334444 89999863 35677788999999998632 221
Q ss_pred -CCCCeEEEEecC------ChhHHHHHHHHHHhhh
Q 012785 428 -FSPKYVRISMLD------RDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 -~~~~~iRis~~~------~~e~i~~~l~~L~~~l 455 (456)
...+++|+++.. ++++++++++.|++++
T Consensus 349 ~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 349 PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARAL 383 (402)
T ss_pred CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 135689999754 4899999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=197.68 Aligned_cols=282 Identities=14% Similarity=0.135 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+|++.++++++. +++++++|+++++..++.+++++|| +|+++.+.|.+... .+...|++++.
T Consensus 63 ~~~le~~la~l~g~--------~~~v~~ssG~~Ai~~al~al~~~Gd----~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~ 130 (390)
T PRK08133 63 VTMFQERLAALEGA--------EACVATASGMAAILAVVMALLQAGD----HVVSSRSLFGSTVSLFEKIFARFGIETTF 130 (390)
T ss_pred HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCC----EEEEccCcchhHHHHHHHHHHHcCcEEEE
Confidence 36888999988852 4688899999999999999999999 99999999987554 45567999888
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.. .++ ..+.+++++|+||.
T Consensus 131 vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl--~~g~Divv~S~sK~ 208 (390)
T PRK08133 131 VDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL--KLGADVVIHSATKY 208 (390)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch--hhCCcEEEeeccee
Confidence 776 3455543 36899999999999999976 488999999999999875322 222 22457999999999
Q ss_pred cCCCCceEE-EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIG-WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~g~~G~RiG-~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++.+|.++| |++.+ +++++++...........+++.+..+...+ +.+....++..++...+.+
T Consensus 209 ~~g~g~~~GG~vv~~-~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl---------------~tl~~R~~~~~~~a~~la~ 272 (390)
T PRK08133 209 LDGQGRVLGGAVVGS-KELMEEVFGFLRTAGPTLSPFNAWVFLKGL---------------ETLSLRMEAHSANALALAE 272 (390)
T ss_pred ecCCcceEeEEEEcC-HHHHHHHHHHHHHhCCCCCHHHHHHHHccc---------------chHHHHHHHHHHHHHHHHH
Confidence 998999985 55554 777777776655455555655544433322 2455556666788889999
Q ss_pred HHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCC----------------
Q 012785 367 AVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHF---------------- 426 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~f---------------- 426 (456)
.|++++.+.....+|.- +....+.....+..+-++++++.+.+.+.+..-.+.. .+..+
T Consensus 273 ~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~-~~~slG~~~sl~~~p~~~~~~ 351 (390)
T PRK08133 273 WLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLIS-ITANLGDTKTTITHPATTTHG 351 (390)
T ss_pred HHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcce-EeccCCCcceeeecCCCCCcc
Confidence 99988655433222210 0111111122233456667544444444444433321 12111
Q ss_pred ----------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 427 ----------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 ----------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|..++.||+|++. |+.+.+++.|.+.|+
T Consensus 352 ~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~ 389 (390)
T PRK08133 352 RLSPEARAAAGITEGLIRVAVGL--EDVADIKADLARGLA 389 (390)
T ss_pred cCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHHhh
Confidence 1135789999854 345667777776653
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=203.92 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCC----hhhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSS----YPSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~ 214 (456)
.++|++++++++. .++++|++|+|++++++.+++.+ .++|| +|++++|.|+. +...++..|++
T Consensus 79 ~~~r~~la~~~~~-----~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~a~~~g~~ 149 (424)
T PLN02855 79 ELARKKVAAFINA-----STSREIVFTRNATEAINLVAYTWGLANLKPGD----EVILSVAEHHSNIVPWQLVAQKTGAV 149 (424)
T ss_pred HHHHHHHHHHcCC-----CCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcC----EEEECCCccHHHHHHHHHHHHHcCCE
Confidence 5888899998864 12479999999999999998863 57888 99999997764 45556778999
Q ss_pred EeeeccCc------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 215 LYKWAGDA------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 215 ~~~~~~d~------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
++.++.+. +.++. .+++++++++|+||||.+++ ++|+++|+++|+|++|..+. .++. ...+.++
T Consensus 150 v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~-~~~~~~~~~~d~ 228 (424)
T PLN02855 150 LKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPH-MPVDVQTLGADF 228 (424)
T ss_pred EEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC-cCCCchhcCCCE
Confidence 88776542 33332 36799999999999999988 37899999999999997432 2332 2234578
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHH--------------------hhccCcCCh-HHHHHHHHHHHhhhCC
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI--------------------ELNTIGVSK-DSQLRAAKVLKVVSDS 338 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~--------------------~~~~~~~s~-~~q~~a~~~L~~~~~~ 338 (456)
+++|++|.+|.+| +||++++ +++++++.... .....|.+. ....++.++++.+.
T Consensus 229 ~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~-- 303 (424)
T PLN02855 229 LVASSHKMCGPTG--IGFLWGK-SDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS-- 303 (424)
T ss_pred EEeecccccCCCc--cEEEEEc-hhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH--
Confidence 9999999888666 8999997 77776653221 001223333 33344445554322
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhC-
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGN- 416 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~- 416 (456)
+..+++.+++.++.++.+.+.|++++++++..+...- ....++++.+.+++ +.+.+.+.|.++
T Consensus 304 --------~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~-------~~~r~~~v~~~~~~~~~~~v~~~L~~~~ 368 (424)
T PLN02855 304 --------EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSE-------GVGRAALCAFNVEGIHPTDLSTFLDQQH 368 (424)
T ss_pred --------HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccc-------ccCcccEEEEEECCcCHHHHHHHhcccC
Confidence 2245677788888888999999887655555332100 00123356666653 456788888766
Q ss_pred CEEeecCCCCCC-------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 417 KILTRSGKHFGF-------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 gI~v~pg~~fg~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
||.++.|..+.. .++++|+|+.. +++|++.+++.|++++
T Consensus 369 gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~ 416 (424)
T PLN02855 369 GVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTI 416 (424)
T ss_pred CEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHH
Confidence 999999875421 24789999874 8999999999999875
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=200.04 Aligned_cols=272 Identities=13% Similarity=0.133 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhh-hcCCe-----
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITD-CVKSR----- 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~-~~g~~----- 214 (456)
.++++.+++.+.. .+...+++++++++++..+++... .+++ +|++.+.+|++...... ..|.+
T Consensus 69 ~~~~~~la~~l~~-----~~~~~~~~~~SGseA~~~Al~~ar~~~~~~----~vv~~~~~yHg~~~~~~~~~~~~~~~~~ 139 (375)
T PRK04260 69 NSLQEEVAQKLIG-----DKDYLAFFCNSGAEANEAAIKIARKATGKQ----EIITFQNSFHGRTFGSMSATGQDKIKDG 139 (375)
T ss_pred CHHHHHHHHHHhc-----CcCCEEEEcCccHHHHHHHHHHHHHhcCCC----eEEEECCCcCcccHHHHhccCCcccCCC
Confidence 6788889987642 122356899999999999988764 2344 89999999997543322 11111
Q ss_pred ----E--eee--ccCcccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCC--CC
Q 012785 215 ----L--YKW--AGDAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTS--IT 272 (456)
Q Consensus 215 ----~--~~~--~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~--~~ 272 (456)
+ +.+ ..|.+.++. .++.++++.+++|++|...+ ++|+++|+++|+||+|.+....+ ..
T Consensus 140 ~~~~~~~~~~~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~ 219 (375)
T PRK04260 140 FGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYA 219 (375)
T ss_pred CCCCCCCeEEeCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhh
Confidence 1 111 125555543 35678889999999998754 27999999999999998643332 11
Q ss_pred ---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 273 ---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 273 ---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
.....+ +.||||.++ +|+|+||++++ +++.+.+.......+++.+++.|.++.++|+.+.. +++
T Consensus 220 ~~~~~~~pd--i~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~---------~~~ 286 (375)
T PRK04260 220 FEHYGIEPD--IFTLAKGLA-NGVPVGAMLAK-SSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT---------AGF 286 (375)
T ss_pred hHhhCCCCC--EEEeccccc-CCcceEEEEEc-HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh---------hHH
Confidence 011122 458999998 89999999997 88888886655567889999999999999986432 467
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCC
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
+++.++..+..++.+.+.+.+.+.+...+. .|. |+|++++.+...+.+.+.++||.+.|+ +
T Consensus 287 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~-------------~~~~~~~~~~~~~~~~l~~~Gi~v~~~-----~ 347 (375)
T PRK04260 287 LEQALENGNYLQEQLQKALQDKETVTTVRG-LGY-------------MIGIETTADLSQLVEAARDKGLIVLTA-----G 347 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEEec-cce-------------EEEEEecCcHHHHHHHHHhCCCEEecC-----C
Confidence 788888888888888888876643222221 233 799998656677888999999999874 3
Q ss_pred CCeEEEEec-C-ChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISML-D-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~-~-~~e~i~~~l~~L~~~l 455 (456)
.+.+|++.. . +++++++++++|++++
T Consensus 348 ~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 348 TNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 578999984 3 8999999999998764
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=201.61 Aligned_cols=262 Identities=15% Similarity=0.092 Sum_probs=180.3
Q ss_pred CceEEEccCHHHHHHHHHHHhcCC----CCCC-------CcEEEEeCCCCCChhhhhhhcCCe---------------Ee
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQ----DASE-------PISVVSAAPYYSSYPSITDCVKSR---------------LY 216 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~----gd~~-------~~~Vlv~~P~y~~~~~~~~~~g~~---------------~~ 216 (456)
.+.++++++++|+++.+++..... +... ..+|+...-+|++....+...... .+
T Consensus 72 ~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~ 151 (382)
T PLN00144 72 ADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFV 151 (382)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEe
Confidence 358999999999999999876421 0000 127999999999987655543211 11
Q ss_pred eeccCcccccc----CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-----CCCCCc
Q 012785 217 KWAGDAKRFNK----DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT-----YPADHD 278 (456)
Q Consensus 217 ~~~~d~~~l~~----~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~-----~~~~~~ 278 (456)
+++ |.+.++. .+++++++..-+||.|.... ++|+++|+++|+||+|.+..+.+.. ...+.+
T Consensus 152 ~~~-d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD 230 (382)
T PLN00144 152 EYG-NLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD 230 (382)
T ss_pred CCC-CHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC
Confidence 111 4444432 35567766544899544432 2899999999999999865443311 111122
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
+.||||.++ +|+|+||++++ +++++.+.......+++.+++.+.++.+.|+.+.++ ...++++++.+.+
T Consensus 231 --i~t~sK~l~-~G~pig~v~~~-~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~------~~~~~~~~~g~~l- 299 (382)
T PLN00144 231 --IMTLAKPLA-GGLPIGAVLVT-EKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKP------GFLASVAKKGEYL- 299 (382)
T ss_pred --EEEeccccc-CCcceEEEEEc-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhc------hHHHHHHHHHHHH-
Confidence 889999998 99999999997 899988876556678999999999999888877554 1344444444444
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML 438 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~ 438 (456)
++.+.+.+.+.+.+.-.+. .|+ ++|+.+......+...+.++||.+.|+. . .+.||++.+
T Consensus 300 --~~~l~~~~~~~~~~~~vrg-~G~-------------~~~l~l~~~~~~~~~~~~~~Gv~i~~~~---~-~~~lrl~p~ 359 (382)
T PLN00144 300 --RELLRRKLGGNPHVKEVRG-VGL-------------LVGIQLDVPAGPLVDACRDSGLLVLTAG---K-GDVVRLVPP 359 (382)
T ss_pred --HHHHHHHHhhCCCceeeec-Cce-------------EEEEEecCccHHHHHHHHHCCeEEeecC---C-CCEEEEeCC
Confidence 4455555655543222222 344 7999885445678888899999999862 1 489999987
Q ss_pred C--ChhHHHHHHHHHHhhhC
Q 012785 439 D--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 439 ~--~~e~i~~~l~~L~~~l~ 456 (456)
. +++++++++++|.++++
T Consensus 360 ~~~~~~~i~~~~~~l~~~l~ 379 (382)
T PLN00144 360 LVISEAELEQAVEILADCLP 379 (382)
T ss_pred CccCHHHHHHHHHHHHHHHH
Confidence 4 78999999999998763
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=200.33 Aligned_cols=275 Identities=16% Similarity=0.142 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC---CCCCCCcEEEEeCCCCCCh----hhhhhhcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS---QDASEPISVVSAAPYYSSY----PSITDCVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~---~gd~~~~~Vlv~~P~y~~~----~~~~~~~g~~~ 215 (456)
.++++.++++++. .++++|++|+|+++++++++.++.. +|+ +|++++|+|+.. ...++..|+++
T Consensus 46 ~~~~~~la~~~~~-----~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~~g~~~ 116 (373)
T cd06453 46 EAAREKVARFINA-----PSPDEIIFTRNTTEAINLVAYGLGRANKPGD----EIVTSVMEHHSNIVPWQQLAERTGAKL 116 (373)
T ss_pred HHHHHHHHHHhCC-----CCCCeEEEeCCHHHHHHHHHHHhhhcCCCCC----EEEECcchhHHHHHHHHHHHhhcCcEE
Confidence 5788888888864 1257899999999999999999987 888 999999999874 33455678888
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLM 280 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~ 280 (456)
+.++.| .+.++. .+++++++++|+||||.+.+ ++|+++|+++|+|++|..... ++. ...+.+++
T Consensus 117 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~d~~ 195 (373)
T cd06453 117 KVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHM-PVDVQDLGCDFL 195 (373)
T ss_pred EEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCce-eeeccccCCCEE
Confidence 776654 333332 36789999999999999977 378999999999999874322 221 22345788
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh---------------------ccCcCChHHHHHHHHHHHhhhCCC
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL---------------------NTIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~---------------------~~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
++|++|.++. .++||++++ +++++.+...... ....++.....++.++++.+.+
T Consensus 196 ~~s~~K~~~~--~g~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~-- 270 (373)
T cd06453 196 AFSGHKMLGP--TGIGVLYGK-EELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEK-- 270 (373)
T ss_pred EeccccccCC--CCcEEEEEc-hHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHH--
Confidence 8999999884 568999996 8888776653210 0112333344444445553322
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCE
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKI 418 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI 418 (456)
.-++.++++.++.++++.+.|++++.+++..+.. ..++++++.++. +.+++.+.|.++||
T Consensus 271 --------~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~l~~~gi 331 (373)
T cd06453 271 --------IGMEAIAAHEHELTAYALERLSEIPGVRVYGDAE-----------DRAGVVSFNLEGIHPHDVATILDQYGI 331 (373)
T ss_pred --------cCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcc-----------ccCCeEEEEECCcCHHHHHHHHHHCCE
Confidence 2246677778888889999998876555542211 123366777754 56778888899999
Q ss_pred EeecCCCCCC-------CCCeEEEEecC--ChhHHHHHHHHH
Q 012785 419 LTRSGKHFGF-------SPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 419 ~v~pg~~fg~-------~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
.+.+|..+.. .+++||+|+.. ++++++++++.|
T Consensus 332 ~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 332 AVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 9998875421 26799999974 899999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=204.26 Aligned_cols=266 Identities=16% Similarity=0.155 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~ 214 (456)
.+|.+.++++. ..+++++++++++|++.+++.... +.. +|+..+.+|++....+...+..
T Consensus 84 ~~la~~l~~~~--------~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~----~ii~~~~~yHG~t~~~~~~~~~ 151 (406)
T PRK12381 84 LRLAKKLIDAT--------FADRVFFCNSGAEANEAALKLARKYAHDRYGSHKS----GIVAFKNAFHGRTLFTVSAGGQ 151 (406)
T ss_pred HHHHHHHHhhC--------CCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCC----eEEEECCCcCCcchhHHhhcCC
Confidence 45555555543 235899999999999999998632 223 8999999999987655443321
Q ss_pred -------------Eeeec-cCcccccc---CCCeEEEEcCCCCCCcccch----------HHhhhcCcEEEeeecCCCCC
Q 012785 215 -------------LYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVRQ----------SVVNRSGGILVHDLAYYWPQ 267 (456)
Q Consensus 215 -------------~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~~----------~l~~~~~~~iI~De~y~~~~ 267 (456)
+..++ .|.+.++. .+++++++ +|.||+|.+++ ++|++||+++|+||+|.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~g 230 (406)
T PRK12381 152 PKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVG 230 (406)
T ss_pred cccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCC
Confidence 11121 24444442 35666766 79999987653 28999999999999998654
Q ss_pred CCCCCC---C--CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 268 YTSITY---P--ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 268 ~~~~~~---~--~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
+.+... . ...+ +.||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.++
T Consensus 231 r~G~~~~~~~~~v~pD--i~t~sK~l~-gG~~ig~~~~~-~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~---- 302 (406)
T PRK12381 231 RTGELYAYMHYGVTPD--VLTTAKALG-GGFPIGAMLTT-EKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTP---- 302 (406)
T ss_pred CCcchhhhHhhCCCCC--EEEehhhhh-CCCceEEEEEc-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhc----
Confidence 433111 1 1122 469999999 99999999997 899988876555568899999999999988854322
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcC-Ccc-ccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhC
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSG-LFS-VPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGN 416 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~ 416 (456)
..+++++++.+++.+.|+++. ... +.... ..+.++|+.++. ....+.+.++++
T Consensus 303 ---------~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vr------------g~Gl~~~~~l~~~~~~~~~~~~~~l~~~ 361 (406)
T PRK12381 303 ---------EMLNGVKQRHDWFVERLNTINARYGLFSEIR------------GLGLLIGCVLNAEYAGKAKQISQEAAKA 361 (406)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHhhCCCEEEEe------------cCeEEEEEEecCchhhHHHHHHHHHHHC
Confidence 356778888888888887652 111 11111 112267887753 245677889999
Q ss_pred CEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 417 KILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
||.+.+. +++.+|++++ .+++++++++++|++++
T Consensus 362 Gv~v~~~-----g~~~lRl~p~~~~t~~~i~~~~~~l~~~l 397 (406)
T PRK12381 362 GVMVLIA-----GPNVVRFAPALNISEEEITTGLDRFARAC 397 (406)
T ss_pred CcEEeeC-----CCCEEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 9999863 2579999876 48999999999998876
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=202.38 Aligned_cols=269 Identities=14% Similarity=0.076 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcC--------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVK-------- 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g-------- 212 (456)
.+|++.++++++. ..+++++++|+++++..+++.+. .+++ +|++.+|+|++........+
T Consensus 82 ~~l~~~l~~~~~~------~~~~v~~~~sgsea~~~al~~~~~~~~~~----~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 151 (413)
T cd00610 82 VELAELLLALTPE------GLDKVFFVNSGTEAVEAALKLARAYTGRK----KIISFEGAYHGRTLGALSLTGSKKYRGG 151 (413)
T ss_pred HHHHHHHHHhCCC------CCCEEEEcCcHHHHHHHHHHHHHHHcCCC----eEEEECCCcCCccHHHHHhcCCcccccc
Confidence 4455555555432 35699999999999999999874 4667 99999999999765544432
Q ss_pred -----CeEeeecc------------Ccccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEee
Q 012785 213 -----SRLYKWAG------------DAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHD 260 (456)
Q Consensus 213 -----~~~~~~~~------------d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~D 260 (456)
.+++.++. |.+.++. .++++++++..+|++|..++ ++|+++++++|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 231 (413)
T cd00610 152 FGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIAD 231 (413)
T ss_pred CCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 12333333 3444432 13455555444667798764 2789999999999
Q ss_pred ecCCCCCCCCC--C-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH--HHHHhhccCcCChHHHHHHHHHHHhh
Q 012785 261 LAYYWPQYTSI--T-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM--TKYIELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 261 e~y~~~~~~~~--~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l--~~~~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
|+|.+....+. . ...+...-+.||||.++ .|+|+||++++ +++++.+ .......+++.+++.|.++.+.|+.+
T Consensus 232 ev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~-~g~~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l 309 (413)
T cd00610 232 EVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLG-GGLPLGAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL 309 (413)
T ss_pred ccccCCCcCcchhhHhhcCCCCCeEEEccccc-CccccEEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 99986422221 1 11121222568999999 68999999996 8888886 33444467889999999998888754
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC----CccccCCCCcccccccccCCCCCceEEeecCc-------
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG----LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ------- 404 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~------- 404 (456)
.+. ...++++++++.+.+.|++.. ......+. +.++|+.++.
T Consensus 310 ~~~-------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~~~~ 362 (413)
T cd00610 310 EEE-------------GLLENAAELGEYLRERLRELAEKHPLVGDVRGR--------------GLMIGIELVKDRATKPP 362 (413)
T ss_pred Hhc-------------cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecC--------------ceEEEEEEecCCCcCCc
Confidence 332 345556666666666666542 11111222 2367777642
Q ss_pred ---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 405 ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
....+.+.|.++||.+.|+. .+.+|++++. +++++++++++|++++
T Consensus 363 ~~~~~~~~~~~l~~~gv~v~~~~-----~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 363 DKELAAKIIKAALERGLLLRPSG-----GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred chHHHHHHHHHHHHCCeEEeecC-----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 24567788889999999964 5789998764 8899999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=204.92 Aligned_cols=273 Identities=12% Similarity=0.116 Sum_probs=188.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhc---CC---
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCV---KS--- 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~---g~--- 213 (456)
..+|+++|++++.. .++|++++|++++++.+++.... ..+ +|+..+|+|+++...+... +.
T Consensus 90 ~~~lae~l~~~~~~-------~~~v~~~~sGseA~e~Alk~ar~~~gr~----~ii~~~~~yhG~~~~~~~~~~~~~~~~ 158 (423)
T TIGR00713 90 EILLAKEIISRVPS-------VEMVRFVNSGTEATMSAVRLARGYTGRD----KIIKFEGCYHGHHDALLVKAGSGAATL 158 (423)
T ss_pred HHHHHHHHHHhCCc-------ccEEEEeCCHHHHHHHHHHHHHHhhCCC----EEEEEcCCCCCChhhhhccccCccccc
Confidence 48999999988743 25899999999999999986533 334 9999999999986533321 10
Q ss_pred --------------eEeeec-cCcccccc------CCCeEEEE-cCCCCCCcccch---------HHhhhcCcEEEeeec
Q 012785 214 --------------RLYKWA-GDAKRFNK------DGPYIELV-TSPNNPDGSVRQ---------SVVNRSGGILVHDLA 262 (456)
Q Consensus 214 --------------~~~~~~-~d~~~l~~------~~~~~i~v-~~P~NPtG~~~~---------~l~~~~~~~iI~De~ 262 (456)
..+.++ .|.+.++. .+++++++ +.|+| +|.+.+ ++|+++|+++|+||+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv 237 (423)
T TIGR00713 159 GLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEV 237 (423)
T ss_pred CCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcc
Confidence 011111 14444432 34567777 57888 787766 279999999999999
Q ss_pred CCCCCCCCC--C--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH---HHhhccCcCChHHHHHHHHHHHhh
Q 012785 263 YYWPQYTSI--T--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK---YIELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 263 y~~~~~~~~--~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~---~~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
|.+..+... . .....+ +.||||.++ +|+|+||++++ +++++.+.. .....+++.++++|.++.+.|+.+
T Consensus 238 ~~g~r~g~~~~~~~~~~~pD--i~t~sK~l~-~G~pig~v~~~-~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~ 313 (423)
T TIGR00713 238 MTGFRVALGGAQEYFGVEPD--LTTLGKIIG-GGLPVGAFGGR-REIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLL 313 (423)
T ss_pred ccccccCcchhHHHhCCCcc--hhhhhhhhc-CCCceeeeeEH-HHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHH
Confidence 986421100 0 011112 348999999 99999999997 899888863 224468899999999999999866
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------c
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------E 405 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~ 405 (456)
.+. .+++..++..+..++.+.+.+++++.....+..|++. ++++..+. +
T Consensus 314 ~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~------------~v~~~~~~~~~~~~~~~~~ 372 (423)
T TIGR00713 314 DEE---------GVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMF------------SLFFTEEEVTNYADAKKSD 372 (423)
T ss_pred hcc---------cHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEE------------EEEEecCCCCChhhhhccc
Confidence 442 3677778888888888888888775332233455541 24443211 1
Q ss_pred ---HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 406 ---IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 406 ---~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
...+.+.+.++||.+.++ .| +.+|++...+++++++++++|.++++
T Consensus 373 ~~~~~~~~~~l~~~Gv~v~~~-~~----~~~~l~~~~t~~~i~~~~~~l~~~l~ 421 (423)
T TIGR00713 373 TELFAKFFHEMLDKGVFLPPS-QF----EACFLSAAHTEEDIENTIEAAEEVFA 421 (423)
T ss_pred HHHHHHHHHHHHHCCeEEecC-Cc----cceeeECCCCHHHHHHHHHHHHHHHh
Confidence 124666777899998763 22 35789887799999999999998863
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=195.96 Aligned_cols=204 Identities=15% Similarity=0.178 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+|++.+|++.+. +..++++++++++.+++.+++.+|| +|+++.|+|..... .+...|+++..
T Consensus 66 ~~~le~~lA~l~g~--------~~~i~~ssG~~Ai~~~l~all~~GD----~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~ 133 (398)
T PRK08249 66 VQAFEEKVRILEGA--------EAATAFSTGMAAISNTLYTFLKPGD----RVVSIKDTYGGTNKIFTEFLPRMGVDVTL 133 (398)
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCChHHHHHHHHHHhcCCCC----EEEEcCCchHHHHHHHHHHHhhCCeEEEE
Confidence 47899999999863 3456666668999999999999999 99999999987543 34567888776
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+.. .++ ..+.+++++|+||.
T Consensus 134 vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l--~~~~Divv~S~sK~ 211 (398)
T PRK08249 134 CETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL--ALGADLVIHSATKF 211 (398)
T ss_pred cCCCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch--hhCCCEEeccCcee
Confidence 553 5555543 36899999999999999987 488999999999999985422 222 23456899999999
Q ss_pred cCCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
+|.+|.++ ||++. +++++++++..+.....+.+++.+..+...++ .+....++..++++.+.+
T Consensus 212 l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~---------------tL~~R~~~~~~na~~la~ 275 (398)
T PRK08249 212 LSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMK---------------TLKLRVRQQQESAMALAK 275 (398)
T ss_pred cCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcc---------------hHHHHHHHHHHHHHHHHH
Confidence 98778887 55555 58999999888776677778877777666554 344455667788889999
Q ss_pred HHHhcCCcc
Q 012785 367 AVQKSGLFS 375 (456)
Q Consensus 367 ~L~~~~~~~ 375 (456)
.|++++.+.
T Consensus 276 ~L~~~p~v~ 284 (398)
T PRK08249 276 YLQTHPKVE 284 (398)
T ss_pred HHHcCCCee
Confidence 999887554
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=197.91 Aligned_cols=285 Identities=13% Similarity=0.110 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh---cCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL---SSQDASEPISVVSAAPYYSSYP----SITDCVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~ 215 (456)
.++|+.++++++. ++++|++++|+++++..++.++ .++|| +|++.+|.|+... ..++..|+++
T Consensus 63 ~~l~~~ia~~~~~------~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd----~vl~~~~~~~s~~~~~~~~~~~~g~~~ 132 (397)
T TIGR01976 63 DDAREAVADLLNA------DPPEVVFGANATSLTFLLSRAISRRWGPGD----EVIVTRLDHEANISPWLQAAERAGAKV 132 (397)
T ss_pred HHHHHHHHHHcCC------CCCeEEEeCCHHHHHHHHHHHHHhcCCCCC----EEEEcCCchHhHHHHHHHHHHhcCCEE
Confidence 5888888888864 3457999999999998887776 57899 9999999887643 4556789988
Q ss_pred eeeccCc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 216 YKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 216 ~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
..++.|. +.++. .+++++++++|+||||.+.+ ++|+++|+++|+|+++.... .++. ...+.++
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~-~~~~~~~~~~d~ 211 (397)
T TIGR01976 133 KWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH-GLIDVQATGADF 211 (397)
T ss_pred EEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc-cCCCHHHcCCCE
Confidence 8766543 33322 35789999999999999977 37899999999999986321 1221 2235678
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc----------CcCChHHHHHHHHHHHhhhCCCC-CCC---Cc
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT----------IGVSKDSQLRAAKVLKVVSDSCK-PSG---SE 345 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~----------~~~s~~~q~~a~~~L~~~~~~~~-~~~---~~ 345 (456)
+++|++|.+| .|+||++++ +++++.+........ ...+.....++.++++.+.+... ... ..
T Consensus 212 ~~~s~~K~~g---~~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~ 287 (397)
T TIGR01976 212 LTCSAYKFFG---PHMGILWGR-PELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRER 287 (397)
T ss_pred EEEechhhcC---CceEEEEEc-HHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhh
Confidence 8899999875 469999996 888777654322111 11222222223333332212100 000 00
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCC
Q 012785 346 DECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~ 424 (456)
..+.+++.+++..+.++++.+.|++++.+.+..+.-+ ...++++.+.+++ +.+.+.+.|.++||.++.|.
T Consensus 288 ~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~ 358 (397)
T TIGR01976 288 LVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARL---------AARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGH 358 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc---------cCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCc
Confidence 0113567778888888889898888765555432100 1133456666653 45678888999999999987
Q ss_pred CCC----------CCCCeEEEEecC--ChhHHHHHHHHH
Q 012785 425 HFG----------FSPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 425 ~fg----------~~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
.|. ...+++|||+.. ++++++.+++.|
T Consensus 359 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 359 FYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred cchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 663 135689999864 888999988764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=192.73 Aligned_cols=253 Identities=14% Similarity=0.116 Sum_probs=179.2
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
++|+.+. ...|++++|++.+ .+++++|+|+++++.+++.+++++|| +|+++.|+|......+
T Consensus 48 ~R~~npt------~~~Le~~lA~leg--------~e~ivvt~gg~~Ai~~~l~all~~Gd----~Il~~~~~y~~~~~~~ 109 (388)
T PRK08861 48 TRSGNPN------RGLLEQTLSELES--------GKGAVVTNCGTSALNLWVSALLGPDD----LIVAPHDCYGGTYRLF 109 (388)
T ss_pred cCCCCch------HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHcCCCC----EEEEcCCchHHHHHHH
Confidence 4566665 4899999999986 36999999999999999999999999 9999999998644332
Q ss_pred ----hhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCC
Q 012785 209 ----DCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYP 274 (456)
Q Consensus 209 ----~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~ 274 (456)
...|+++..++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+. ..++ .
T Consensus 110 ~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl--~ 187 (388)
T PRK08861 110 NTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL--E 187 (388)
T ss_pred HHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc--c
Confidence 234667666543 4555543 37899999999999999987 37889999999999998542 2333 2
Q ss_pred CCCcEEEecCccccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 275 ADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
.+-+++++|++|.++ +.+++.|+++++++++.++++..+.......+++....+...|+ .+.-.
T Consensus 188 ~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~---------------Tl~lR 252 (388)
T PRK08861 188 LGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIR---------------TLGAR 252 (388)
T ss_pred cCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCC---------------CHHHH
Confidence 345799999999886 45688999988667888888877776677788888776666555 24445
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhC
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGN 416 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 416 (456)
.++..++...+.+.|+.++.+.....+|.- ....++.....+..+.+.++++.+.+.+.+..-
T Consensus 253 ~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l 319 (388)
T PRK08861 253 MRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKAL 319 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcC
Confidence 566677888899999998765432222211 011112222234456667754444444444433
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=193.50 Aligned_cols=284 Identities=15% Similarity=0.159 Sum_probs=195.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
..+|++.++++.+. +..++++++++|+..++.+++++|| +|+++.+.|...... ++..|.++..
T Consensus 42 ~~~le~~la~l~g~--------~~a~~~~sG~~Ai~~~l~~l~~~gd----~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 109 (369)
T cd00614 42 VDALEKKLAALEGG--------EAALAFSSGMAAISTVLLALLKAGD----HVVASDDLYGGTYRLFERLLPKLGIEVTF 109 (369)
T ss_pred HHHHHHHHHHHHCC--------CCEEEEcCHHHHHHHHHHHHcCCCC----EEEECCCCcchHHHHHHHHHhhcCeEEEE
Confidence 48999999998863 3566677778999999999999999 999999999986643 4466888877
Q ss_pred eccC-cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAGD-AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~d-~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++.+ .+.++. .++++|++++|+||+|.+.+ ++|+++|+++|+|++|..+.. .++ ..+.+++++|+||.
T Consensus 110 v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~--~~g~Divv~S~tK~ 187 (369)
T cd00614 110 VDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPL--ELGADIVVHSATKY 187 (369)
T ss_pred eCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChh--hhCCcEEEecccee
Confidence 7664 444432 36799999999999999977 478999999999999985432 222 23568999999999
Q ss_pred cCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++.+| ++.||+++++++++++++........+.+++.+.++...|+ .+....++..++.+.+.+
T Consensus 188 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~---------------tl~~r~~~~~~na~~la~ 252 (369)
T cd00614 188 IGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLK---------------TLPLRMERHSENALKVAE 252 (369)
T ss_pred ccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC---------------CHHHHHHHHHHHHHHHHH
Confidence 97665 89999999744899999887765666777777666555443 233456667788889999
Q ss_pred HHHhcCCccccCCCCc----ccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEe---ecC------------CCC-
Q 012785 367 AVQKSGLFSVPELPSQ----FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILT---RSG------------KHF- 426 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v---~pg------------~~f- 426 (456)
.|++++.+.....++. .+....+.....+..+-+.++++.+...+.+..-.+.. .-| .+.
T Consensus 253 ~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~ 332 (369)
T cd00614 253 FLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQ 332 (369)
T ss_pred HHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCccccccc
Confidence 9998875432221110 00000111223345566677544455555555555442 111 111
Q ss_pred ---------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 427 ---------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 ---------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|..++.+|+|++. |+.+.+++.|.+.|+
T Consensus 333 ~~~~~~~~~g~~~~liR~svGl--E~~~dl~~dl~~al~ 369 (369)
T cd00614 333 LPPEERAAAGITPGLVRLSVGI--EDVEDLIADLEQALK 369 (369)
T ss_pred CCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhhC
Confidence 2235789999965 566777888877764
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=198.53 Aligned_cols=275 Identities=12% Similarity=0.022 Sum_probs=187.5
Q ss_pred HHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEe-------
Q 012785 147 KEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLY------- 216 (456)
Q Consensus 147 ~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~------- 216 (456)
..+++.+. ..+.... ++++++++++++++.+++.... ... +|+...|+|++....+...+....
T Consensus 87 ~~la~~l~~~~~~~~~--~~~~f~~sGsea~e~Alklar~~~~r~----~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~ 160 (425)
T PRK08088 87 LELCEKMNQKVPGDFA--KKTLLVTTGSEAVENAVKIARAATKRS----GVIAFTGAYHGRTHYTLALTGKVNPYSAGMG 160 (425)
T ss_pred HHHHHHHHHhCCCCCC--CEEEEeCCcHHHHHHHHHHHHHHhCCC----eEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence 35666663 3332221 3666666666777777765532 122 688889999999877766543211
Q ss_pred ---------eeccCc---------cccc--------cCCCeEEEEcC-CCCCCcccch--------HHhhhcCcEEEeee
Q 012785 217 ---------KWAGDA---------KRFN--------KDGPYIELVTS-PNNPDGSVRQ--------SVVNRSGGILVHDL 261 (456)
Q Consensus 217 ---------~~~~d~---------~~l~--------~~~~~~i~v~~-P~NPtG~~~~--------~l~~~~~~~iI~De 261 (456)
.++.+. +.++ ..+..++++.. .+||.+...+ ++|+++++++|+||
T Consensus 161 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De 240 (425)
T PRK08088 161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE 240 (425)
T ss_pred CCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 122111 1121 12345555533 3677555555 38999999999999
Q ss_pred cCCCCCCCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 262 AYYWPQYTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 262 ~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
+|.+..+.+-. ...+.+..+.||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.++|+....
T Consensus 241 v~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~-~G~rig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~- 317 (425)
T PRK08088 241 VQTGAGRTGTLFAMEQMGVAADLTTFAKSIA-GGFPLAGVTGR-AEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ- 317 (425)
T ss_pred cccCCCcCcchhHHhhcCCCCCEEEEecccc-CCCcceeeEec-HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-
Confidence 99975443311 12334556899999999 99999999997 99999888777777899999999999999996532
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC--------c--cHHH
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--------Q--EIED 408 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--------~--~~~~ 408 (456)
++++++.++..+++++.+.+.+++.+.+....+. |+ ++|+.+. . ....
T Consensus 318 --------~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~-------------~~~l~l~~~~~~~~p~~~~~~~ 375 (425)
T PRK08088 318 --------ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GA-------------MIAIELFEDGDHSKPNAKLTAQ 375 (425)
T ss_pred --------cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ce-------------EEEEEEecCCCCCCCCHHHHHH
Confidence 4677778877777777777666665543223333 33 6899872 1 1456
Q ss_pred HHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 409 CESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 409 ~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+.+.+.++||.+.|+..| .+.||++++. +++++++++++|++.+
T Consensus 376 l~~~~~~~Gv~~~~~~~~---~~~iRl~~~~~~t~~ei~~~i~~l~~~l 421 (425)
T PRK08088 376 IVARARDKGLILLSCGPY---YNVLRILVPLTIEDAQIRQGLEIIAQCF 421 (425)
T ss_pred HHHHHHhCCCEEecCCCC---CCEEEEECCCCcCHHHHHHHHHHHHHHH
Confidence 778888999999886544 4789999983 7999999999999876
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=196.68 Aligned_cols=283 Identities=12% Similarity=0.145 Sum_probs=198.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc-----CC-CCCCCcEEEEeCCCCCChhh---hhhhcC
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS-----SQ-DASEPISVVSAAPYYSSYPS---ITDCVK 212 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-----~~-gd~~~~~Vlv~~P~y~~~~~---~~~~~g 212 (456)
.+.+++++++++...+. .++++|++|+|++++++.+++++. ++ ++ +|++..+.|+.+.. .++..|
T Consensus 41 ~~~l~~a~~~~~~~~~~--~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~----~vi~~~~e~ps~~~~~~~~~~~G 114 (382)
T TIGR03403 41 HPAIAEALDKLYKGINA--RDLDDIIITSCATESNNWVLKGVYFDEILKGGKN----HIITTEVEHPAVRATCAFLESLG 114 (382)
T ss_pred HHHHHHHHHHHHHHcCc--CCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCC----EEEEcCCccHHHHHHHHHHHHCC
Confidence 47899999988865443 235799999999999999998762 44 45 79998866655544 455679
Q ss_pred CeEeeeccCc------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCC
Q 012785 213 SRLYKWAGDA------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADH 277 (456)
Q Consensus 213 ~~~~~~~~d~------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~ 277 (456)
++++.++.|. +.++. .+++++++++||||||.+++ ++|+++|+++|+|+++..... ++. ...+-
T Consensus 115 ~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~-~~~~~~~~~ 193 (382)
T TIGR03403 115 VEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI-PVDVQKAGV 193 (382)
T ss_pred CEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC-ccCccccCC
Confidence 9988777643 33322 25789999999999999987 378999999999999874322 222 22345
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHH--HHHH---HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVA--KKMT---KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~--~~l~---~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
++++.|++|.+|.+| +|++++. +... ..+. .........++...+.++.+.++.. .++++.
T Consensus 194 D~~~~s~~K~~gp~G--~g~l~vr-~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-----------~~~~~~ 259 (382)
T TIGR03403 194 DFLSFSAHKFHGPKG--VGGLYIR-KGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLA-----------NEYLDF 259 (382)
T ss_pred CEEEEcchhhCCCCc--eEEEEEC-CCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHH-----------HHhHHH
Confidence 699999999988888 5888875 3220 1010 0001123456777777777777632 345777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCC----
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFG---- 427 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg---- 427 (456)
..+++++.++.+.+.|++++++.+..+... ..++++.+.++. +.+.+...|.++||.++.|+.|.
T Consensus 260 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~ 329 (382)
T TIGR03403 260 EKSHVRRLRDRLEDALLELPDVFVVGDREH----------RVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDL 329 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEECCCCC----------CcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCC
Confidence 888999999999999988776666543210 123355566653 45667777889999999887652
Q ss_pred ----------C----CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 428 ----------F----SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 ----------~----~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
. ..+.||+|+.. +++|++++++.|++++
T Consensus 330 ~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~ 373 (382)
T TIGR03403 330 EANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAV 373 (382)
T ss_pred CcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 1 12579999875 8999999999998875
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-21 Score=191.50 Aligned_cols=282 Identities=12% Similarity=0.090 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh--hhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY--PSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~ 219 (456)
..++++.++++++. +. ..+.|+++.|+++++..++..+..++| +|+++.++|.+. ...++..|+++..++
T Consensus 39 ~~~~~~~l~~l~~~---~~-~~~~i~~~~~gt~~l~~~~~~l~~~~~----~vlv~~~~~~~~~~~~~~~~~g~~~~~i~ 110 (368)
T PRK13479 39 TASVRAKLVAIATG---EE-GYTCVPLQGSGTFSVEAAIGSLVPRDG----KVLVPDNGAYGARIAQIAEYLGIAHVVLD 110 (368)
T ss_pred HHHHHHHHHHHhCC---CC-CceEEEEcCCcHHHHHHHHHhccCCCC----eEEEEeCCchHHHHHHHHHHcCCcEEEEE
Confidence 47888888888763 11 125688999999999999999999998 899998888776 377788899888766
Q ss_pred cC------cccccc-----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 220 GD------AKRFNK-----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 220 ~d------~~~l~~-----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
.+ .+.++. .+++++++++|+||||...+ ++|+++++++|+|+++.. +..++. ...+.++++.
T Consensus 111 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~-g~~~~~~~~~~~d~~v~ 189 (368)
T PRK13479 111 TGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSF-GAIPIDIAELGIDALIS 189 (368)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEccccc-CCccccccccCceEEEe
Confidence 54 233322 23567889999999999977 488999999999965542 222232 2224568889
Q ss_pred cCcccc-CCCCceEEEEEEeCHHHHHHHHHHHh-----------------hccCcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 283 TVSKST-GHAGTRIGWALVKDMEVAKKMTKYIE-----------------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 283 S~SK~~-g~~G~RiG~l~~~~~~~~~~l~~~~~-----------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
|++|.+ |.+| +||++++ +++++.+..... ...++++...+.++.++++.+.+
T Consensus 190 s~~K~l~g~~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~------- 259 (368)
T PRK13479 190 SANKCIEGVPG--FGFVIAR-RSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEE------- 259 (368)
T ss_pred cCccccccCCC--ceEEEEC-HHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHH-------
Confidence 999965 6778 6999997 888777654321 11135666666666666664322
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC--ccHHHHHHHHHhCCEEeec
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--QEIEDCESFLKGNKILTRS 422 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~l~~~gI~v~p 422 (456)
+..+++.+++++++++.+.+.|++++ +.+..+.. .. .+....+++... .+.+.+.+.|.++||.+++
T Consensus 260 --~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~ 328 (368)
T PRK13479 260 --EGGVPARGARYANNQRTLVAGMRALG-FEPLLDAE-IQ-------SPIIVTFHAPADPAYDFKEFYERLKEQGFVIYP 328 (368)
T ss_pred --hhCHHHHHHHHHHHHHHHHHHHHHcC-CcccCCch-hc-------CceEEEEECCCCCCcCHHHHHHHHHHCCEEEec
Confidence 22456677889999999999998875 33322211 00 000012333222 1456788889999999999
Q ss_pred CCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 423 GKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 423 g~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|..+ ..+++|++... ++++++.+++.|++++
T Consensus 329 g~~~--~~~~iRis~~~~~t~edi~~~l~~L~~~l 361 (368)
T PRK13479 329 GKLT--QVDTFRIGCIGDVDAADIRRLVAAIAEAL 361 (368)
T ss_pred CCCC--CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 8654 25689998634 8999999999999876
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-21 Score=190.11 Aligned_cols=281 Identities=11% Similarity=0.072 Sum_probs=197.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh--hhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY--PSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~ 219 (456)
..++|+.++++++. +. .++.|++|+|++++++.++..+..++| ++++..+++++. ...++..|.+++.++
T Consensus 37 ~~~~r~~la~l~~~---~~-~~~~i~~t~~~t~al~~~~~~l~~~~~----~vlv~~~~~~~~~~~~~a~~~g~~~~~v~ 108 (363)
T TIGR02326 37 VEQIRQQLLALATA---EE-GYTSVLLQGSGTFAVEAVIGSAVPKDG----KLLVVINGAYGARIVQIAEYLGIPHHVVD 108 (363)
T ss_pred HHHHHHHHHHHhCC---CC-CceEEEEcCCCHHHHHHHHHhcCCCCC----eEEEEeCChhhHHHHHHHHHcCCceEEEe
Confidence 35677778887754 10 124799999999999999999988888 777776666554 356788899888666
Q ss_pred cCc------ccccc-----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 220 GDA------KRFNK-----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 220 ~d~------~~l~~-----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
.+. +.++. .+++++.+++++||||..++ ++|+++|+++|+|+++.-. ..++. ...+-+++++
T Consensus 109 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g-~~~~~~~~~~~D~~~~ 187 (363)
T TIGR02326 109 TGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFG-GIPIDIAELHIDYLIS 187 (363)
T ss_pred CCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEcccccc-CcccchhhcCccEEEe
Confidence 542 33322 13567888899999999987 4889999999999877632 22222 2234579999
Q ss_pred cCcccc-CCCCceEEEEEEeCHHHHHHHHHHH------------------hhccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 283 TVSKST-GHAGTRIGWALVKDMEVAKKMTKYI------------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 283 S~SK~~-g~~G~RiG~l~~~~~~~~~~l~~~~------------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
|++|.+ |.+| +||++++ ++..+++.... ....+..+...+.++.++++.+.+.
T Consensus 188 s~~K~l~~p~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~----- 259 (363)
T TIGR02326 188 SANKCIQGVPG--FGFVIAR-QAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKE----- 259 (363)
T ss_pred cCccccccCCc--ceEEEEC-HHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHh-----
Confidence 999987 5556 7999997 77766543210 0123456777888877777643221
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEE
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKIL 419 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~ 419 (456)
..+++.+++++++++++.+.|++++ +....+.. ...+...|+.+++ +...+.+.|+++||.
T Consensus 260 ----g~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~ 324 (363)
T TIGR02326 260 ----GGVAARHQRYQQNQKTLVAGMRALG-FEPLLDDE----------IQSPIITSFYSPEDPDYRFADFYQRLKEQGFV 324 (363)
T ss_pred ----hCHHHHHHHHHHHHHHHHHHHHHcC-CeeccCcc----------cCCceEEEEECCCCCCCCHHHHHHHHHHCCEE
Confidence 2356678899999999999998875 33322110 0112245666653 346688888999999
Q ss_pred eecCCCCCCCCCeEEEEe-cC-ChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRISM-LD-RDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~-~~-~~e~i~~~l~~L~~~l~ 456 (456)
++||..+. .++|||++ +. +.++++++++.|++++.
T Consensus 325 v~~g~~~~--~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 325 IYPGKVSQ--VDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred EECCcCCC--CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 99998663 57999995 43 89999999999998863
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=194.80 Aligned_cols=271 Identities=16% Similarity=0.157 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 219 (456)
..+|++.++++++. ++.+++++| ++++..++..+.. +++ .|+.....|......+...|.++..|+
T Consensus 92 ~~~Le~~la~~~g~-------~~~l~~~sG-~~an~~ai~~l~~~~~~~----~v~~~~~~h~s~~~~~~~~g~~~~~~~ 159 (402)
T TIGR01821 92 HVELEAELADLHGK-------ESALVFTSG-YVANDATLATLAKIIPGC----VIFSDELNHASMIEGIRHSGAEKFIFR 159 (402)
T ss_pred HHHHHHHHHHHhCC-------CeEEEECch-HHHHHHHHHHhhCCCCCC----EEEEcchHhHHHHHHHHHcCCeEEEEC
Confidence 37899999998852 345555555 7888888888765 555 555554555455566666787766554
Q ss_pred c-Cccccc---c----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CCCCCCCC---C-CCCc
Q 012785 220 G-DAKRFN---K----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQYTSITY---P-ADHD 278 (456)
Q Consensus 220 ~-d~~~l~---~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~~~~~~~---~-~~~~ 278 (456)
. |.+.++ . .++++|++++|+||||.+.+ ++|+++++++|+||+|.. +...+... . .+.+
T Consensus 160 ~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~d 239 (402)
T TIGR01821 160 HNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRID 239 (402)
T ss_pred CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCe
Confidence 3 433332 1 24689999999999999977 389999999999999972 21122211 1 2347
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
|+++||||.+|++| ||++++ +++++.+...... .+.+.++..+.++.+.|+.+.+ . ...++.
T Consensus 240 iv~~t~sKa~g~~G---G~i~~~-~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~-----------~-~~~~~~ 303 (402)
T TIGR01821 240 IIEGTLAKAFGVVG---GYIAAS-RKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKE-----------S-QDLRRA 303 (402)
T ss_pred EEEEechhhhccCC---ceeecC-HHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhc-----------C-HHHHHH
Confidence 88999999999888 999986 8898888765432 2456788888888888874322 1 344556
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHH-HhCCEEeecCCCCC--CCCC
Q 012785 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFL-KGNKILTRSGKHFG--FSPK 431 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l-~~~gI~v~pg~~fg--~~~~ 431 (456)
++++++++.+.|++++ +.+..+.+ +++.+.++. ....+.+.| +++||.+++..... .+.+
T Consensus 304 ~~~~~~~l~~~L~~~g-~~~~~~~~--------------~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~ 368 (402)
T TIGR01821 304 HQENVKRLKNLLEALG-IPVIPNPS--------------HIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTE 368 (402)
T ss_pred HHHHHHHHHHHHHHcC-CCcCCCCC--------------CEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCc
Confidence 6788888999998864 34333333 355555543 244566665 46799999855322 2357
Q ss_pred eEEEEec--CChhHHHHHHHHHHhhh
Q 012785 432 YVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
++||++. .++++++++++.|++++
T Consensus 369 ~lRis~~~~~t~edi~~~~~~l~~~~ 394 (402)
T TIGR01821 369 RLRITPTPAHTDKMIDDLVEALLLVW 394 (402)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 8999985 38999999999998875
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=194.93 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP----SITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~ 217 (456)
..+|+++++++.+. + ..++++++++++.+++.+++++|| +|+++.|+|.... ..++..|+++..
T Consensus 67 ~~~le~~lA~l~g~-------~-~~i~~~sG~~Al~~~l~~ll~~Gd----~Viv~~~~y~~t~~~~~~~~~~~G~~v~~ 134 (403)
T PRK07503 67 LALLEQRMASLEGG-------E-AAVALASGMGAITATLWTLLRPGD----EVIVDQTLYGCTFAFLHHGLGEFGVTVRH 134 (403)
T ss_pred HHHHHHHHHHHhCC-------C-cEEEEcCHHHHHHHHHHHHcCCCC----EEEEccCccchHHHHHHHHHhhCCEEEEE
Confidence 48999999999863 2 345555667899999999999999 9999999997633 344567888887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.. ..+...+.+++++|+||.+
T Consensus 135 vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~-~~~l~~g~Di~v~S~tK~l 213 (403)
T PRK07503 135 VDLTDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL-QRPLELGADLVVHSATKYL 213 (403)
T ss_pred eCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-CCchhhCCCEEEccccccc
Confidence 766 4555543 36899999999999999977 378999999999999985421 1112235579999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHHHHHHH--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAKKMTKY--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~~l~~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
+.+| +|.||++. +++++++++.. +.......+++.+..+...|+ .+....++..++...+.
T Consensus 214 ~g~gd~~gG~v~~-~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~---------------tl~~r~~~~~~na~~~a 277 (403)
T PRK07503 214 GGHGDITAGLVVG-GKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK---------------TLALRMDRHCASAQAVA 277 (403)
T ss_pred cCCCceeEEEEEc-CHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc---------------hHHHHHHHHHHHHHHHH
Confidence 8766 78888886 48898888743 443456677777766655444 33334445557888889
Q ss_pred HHHHhcCCcccc
Q 012785 366 MAVQKSGLFSVP 377 (456)
Q Consensus 366 ~~L~~~~~~~~~ 377 (456)
+.|++++.++..
T Consensus 278 ~~L~~~p~v~~V 289 (403)
T PRK07503 278 EWLARHPAVELV 289 (403)
T ss_pred HHHHhCCCccEE
Confidence 999988765543
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=192.60 Aligned_cols=286 Identities=13% Similarity=0.119 Sum_probs=188.3
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
++|+++. ..+|++.+|++++. ++.+++++| +.++..++.+++++|| +|+++.|.|......+
T Consensus 56 ~r~~~pt------~~~Le~~lA~l~G~-------~~al~~~sG-~~Ai~~~l~al~~~Gd----~Vv~~~~~y~~~~~~~ 117 (386)
T PRK06767 56 SRLGNPT------VKLFEERMAVLEGG-------EEALAFGSG-MAAISATLIGFLKAGD----HIICSNGLYGCTYGFL 117 (386)
T ss_pred cCCCCcc------hHHHHHHHHHHhCC-------CcEEEECCH-HHHHHHHHHHHhCCCC----EEEEcCCcHHHHHHHH
Confidence 4566665 48999999999973 345656555 5789999999999999 9999999888765554
Q ss_pred hh----cCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCC
Q 012785 209 DC----VKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYP 274 (456)
Q Consensus 209 ~~----~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~ 274 (456)
.. .|+++...+. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+. ..++ .
T Consensus 118 ~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl--~ 195 (386)
T PRK06767 118 EVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL--E 195 (386)
T ss_pred HHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch--h
Confidence 33 3555443332 4555543 36799999999999999977 48899999999999997431 1222 2
Q ss_pred CCCcEEEecCccccCCCCceE-EEEEEeCHHHHHHHH-HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 275 ADHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAKKMT-KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~~l~-~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
.+.+++++|+||.++.+|.|+ ||++++ ++.++++. ..+.......+++.+.++...|+ .+..
T Consensus 196 ~g~Div~~S~sK~l~g~g~~~gG~v~~~-~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~---------------tl~~ 259 (386)
T PRK06767 196 LGCDAVVHSATKYIGGHGDVVAGVTICK-TRALAEKIRPMRKDIGGIMAPFDAWLLLRGLK---------------TLAV 259 (386)
T ss_pred cCCcEEEecCcceecCCCCceeEEEEeC-hHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC---------------cHHH
Confidence 344799999999998889986 899986 66666654 33333334456666555444333 2344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccc-CCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCC--
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVP-ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHF-- 426 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~f-- 426 (456)
..++.+++.+.+.+.|++++.+... .|+. ...++..+..+..+.+.+++ +...+.+.|+..++.+.-|...
T Consensus 260 r~~~~~~~a~~la~~L~~~p~v~~v~~p~~---~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl 336 (386)
T PRK06767 260 RMDRHCDNAEKIVSFLKNHDAVEGVWYPEG---ELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETL 336 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccEEECCCc---HHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCcc
Confidence 5667788999999999998766532 2211 11111112223345556653 3455667777777776665332
Q ss_pred --------------------CCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 427 --------------------GFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 --------------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|..++.||+|++. |+.+.+++-|.+.|
T Consensus 337 ~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~~al 383 (386)
T PRK06767 337 IQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL--ESWEDIVSDLEQAL 383 (386)
T ss_pred ccCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHH
Confidence 1125689999964 34555566665554
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=193.90 Aligned_cols=313 Identities=12% Similarity=0.037 Sum_probs=206.2
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccC-----CCCcccCCCHHHHHHHHHHHHH-hcCccCCCceE
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-----VRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHI 166 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-----~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I 166 (456)
+..+++|+.|+|+++.|+.+..... +. .. .+.|.+ ..| .+++++++++++.. +|.. .+++
T Consensus 19 ~~~~~~l~~g~~~~~~p~~~~~~~~-~~--~~---~~~~~~~~~~~~~g-----~~~~~~~~~~~la~~~g~~---~~~v 84 (398)
T cd00613 19 DQSMSFLGSGTYKHNPPAVIKRNIL-EN--EF---YTAYTPYQPEISQG-----RLQALFELQTMLCELTGMD---VANA 84 (398)
T ss_pred ccCcccccccccCCcCcHHHHHHhc-cc--cC---cccCCCCChhhhhh-----HHHHHHHHHHHHHHHHCCC---ccce
Confidence 3456999999999998876654322 11 11 123444 567 48999999998854 4543 2356
Q ss_pred EEcc-CHHHHHHHHHHHhcCC--CCCCCcEEEEeCCCCCChhhhhhhcC----CeEeeeccC------cccccc---CCC
Q 012785 167 VVGT-GSTQLFQAALYALSSQ--DASEPISVVSAAPYYSSYPSITDCVK----SRLYKWAGD------AKRFNK---DGP 230 (456)
Q Consensus 167 ~~t~-G~~~al~~~~~~l~~~--gd~~~~~Vlv~~P~y~~~~~~~~~~g----~~~~~~~~d------~~~l~~---~~~ 230 (456)
++++ |++++...+..++..+ || +|++++|.|+.+...+...| .+++.++.+ .+.++. .++
T Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~~gd----~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 85 SLQDEATAAAEAAGLAAIRAYHKRN----KVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred eccCchHHHHHHHHHHHHhcccCCC----EEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 5555 5555555555565665 88 99999999999998888877 777766543 344433 367
Q ss_pred eEEEEcCCCCCCcccch------HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCC----CceEEEEEE
Q 012785 231 YIELVTSPNNPDGSVRQ------SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHA----GTRIGWALV 300 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~------~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~----G~RiG~l~~ 300 (456)
++|++++|+ |||.+.+ ++|+++|+++|+|+++............+.+++++|++|.+ .| |.|+||+++
T Consensus 161 ~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~ 238 (398)
T cd00613 161 AALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAV 238 (398)
T ss_pred EEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEEE
Confidence 889898885 9999865 37899999999999875322111122345789999999998 46 799999999
Q ss_pred eCHHHHHHHHHH-----------------------------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 301 KDMEVAKKMTKY-----------------------------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 301 ~~~~~~~~l~~~-----------------------------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
+ +++.+.+... ....+++.+.....++...+..+ + ++.++
T Consensus 239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~--~--------~~g~~ 307 (398)
T cd00613 239 K-KELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL--G--------PEGLK 307 (398)
T ss_pred h-hhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh--C--------HHHHH
Confidence 6 7777654110 00111222233333333333321 1 44677
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCC
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFG 427 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg 427 (456)
+.+++++++++++.+.|++++... .+.+.+. .-++++++. +.+.+.+.|.++||.+.... .
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~--~ 372 (398)
T cd00613 308 EIAERAHLNANYLAKRLKEVGGVL--PFNGPFF-----------HEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMY--L 372 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcc--cCCCCee-----------EEEEEEcCCcchHHHHHHHHhhhhcCccccccc--c
Confidence 888999999999999999876433 2222220 014666653 35667788889999865421 1
Q ss_pred CCCCeEEEEecC--ChhHHHHHHHHH
Q 012785 428 FSPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 428 ~~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
...+.+|++... ++|+++++++.|
T Consensus 373 ~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 373 PVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 235789999764 899999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=192.14 Aligned_cols=256 Identities=16% Similarity=0.170 Sum_probs=168.2
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
..|+.+. ..+|++.+|++++. + ..+++++++.++..++.+++++|| +|++++|.|..+...+
T Consensus 60 ~r~~~p~------~~~Le~~lA~l~G~------~--~~~~~~sG~~Ai~~~l~~~l~~Gd----~Vl~~~~~y~~~~~~~ 121 (398)
T PRK07504 60 SRYSNPT------VDMFEKRMCALEGA------E--DARATASGMAAVTAAILCQVKAGD----HVVAARALFGSCRYVV 121 (398)
T ss_pred ecCCCch------HHHHHHHHHHHhCC------C--eeeEecCHHHHHHHHHHHHhCCCC----EEEEcCCchhHHHHHH
Confidence 3566655 48999999999864 2 334466777888888888889999 9999999999865443
Q ss_pred ----hhcCCeEeeec-cCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCC
Q 012785 209 ----DCVKSRLYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPA 275 (456)
Q Consensus 209 ----~~~g~~~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~ 275 (456)
...|+++..++ .|.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.+. .+...
T Consensus 122 ~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~-~~~~~ 200 (398)
T PRK07504 122 ETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQ-KPLEL 200 (398)
T ss_pred HHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccC-Cchhh
Confidence 45688777665 35555543 36899999999999999987 4889999999999999853221 11233
Q ss_pred CCcEEEecCccccCCCCceEEEEEEeCHHHHH-HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK-KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~-~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
+.+++++|+||.++.+|+|+|++++.+++.++ .++..........+++.+..+...|+ .+....
T Consensus 201 gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~---------------tl~~R~ 265 (398)
T PRK07504 201 GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLE---------------TLPVRV 265 (398)
T ss_pred CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc---------------hHHHHH
Confidence 56899999999998899999754443355543 45555444455566665555555444 344455
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCcccc----cccccCCCCCceEEeecCccHHHHHHHHHhCCE
Q 012785 355 HQMSTRWKQLRMAVQKSGLFSVPELPSQFCT----FLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~----~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI 418 (456)
++..++...+.+.|++++.+.....+|.-.. ..++.....+..+-++++++.+...+.+..-.+
T Consensus 266 ~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~ 333 (398)
T PRK07504 266 RQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKI 333 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCc
Confidence 5556888888999998875542222221100 011112223555677775444444444444333
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=194.32 Aligned_cols=271 Identities=16% Similarity=0.162 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 219 (456)
..+|++.+|++++. ++.+++++|. ++...++..+.. +++ .|+.....+......++..+.++..++
T Consensus 93 ~~~l~~~la~~~g~-------~~~~~~~sG~-~an~~ai~~l~~~~~~~----~i~~~~~~h~s~~~~~~~~~~~~~~~~ 160 (407)
T PRK09064 93 HVELERELADLHGK-------EAALVFTSGY-VSNDATLSTLAKLIPDC----VIFSDELNHASMIEGIRRSRCEKHIFR 160 (407)
T ss_pred HHHHHHHHHHHhCC-------CcEEEECcHH-HHHHHHHHHHhCCCCCC----EEEEeCcchHHHHHHHHHcCCcEEEEC
Confidence 47899999988752 4567777765 676667776654 555 555565555555566666777776665
Q ss_pred c-Cccccc---c----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCC-C---CCCCCCC---CC-CCCc
Q 012785 220 G-DAKRFN---K----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYY-W---PQYTSIT---YP-ADHD 278 (456)
Q Consensus 220 ~-d~~~l~---~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~-~---~~~~~~~---~~-~~~~ 278 (456)
. |.+.++ . .++++|++++|+||+|.+.+ ++|+++++++|+||+|. + +...++. .. .+.+
T Consensus 161 ~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~d 240 (407)
T PRK09064 161 HNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRID 240 (407)
T ss_pred CCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCe
Confidence 4 333322 1 35689999999999998866 48999999999999996 2 1111221 11 2347
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
|+++||||.||++| ||++++ +++++.+...... .+.+.++..+.++.+.|+.+.. ....+++
T Consensus 241 iv~~t~sKa~g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~------------~~~~~~~ 304 (407)
T PRK09064 241 IIEGTLAKAFGVMG---GYIAGS-AALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKE------------SNEERER 304 (407)
T ss_pred EEEEecchhhhccC---ceEecC-HHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhc------------CHHHHHH
Confidence 89999999999888 999986 8888888765432 2446677778888787774322 1234677
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHH-HhCCEEeecCCCCCC--CCC
Q 012785 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFL-KGNKILTRSGKHFGF--SPK 431 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l-~~~gI~v~pg~~fg~--~~~ 431 (456)
++++++++.+.|++.+ +.+..+. ++++++.++. ....+.+.| +++||.+++...... +.+
T Consensus 305 ~~~~~~~l~~~L~~~g-~~~~~~~--------------~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~ 369 (407)
T PRK09064 305 HQERAAKLKAALDAAG-IPVMPNE--------------SHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTE 369 (407)
T ss_pred HHHHHHHHHHHHHHcC-CCCCCCC--------------CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCc
Confidence 8889999999998864 3333222 3356666643 344566655 467999998653322 347
Q ss_pred eEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 432 YVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++||++.. ++++++++++.|++++
T Consensus 370 ~lRis~~~~~t~edi~~l~~~l~~~~ 395 (407)
T PRK09064 370 RLRITPTPFHTDEMIDHLVEALVEVW 395 (407)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 89999853 8999999999999875
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=195.33 Aligned_cols=268 Identities=14% Similarity=0.080 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC---------C-CCCCcEEEEeCCCCCChhhhhhhcC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ---------D-ASEPISVVSAAPYYSSYPSITDCVK 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~---------g-d~~~~~Vlv~~P~y~~~~~~~~~~g 212 (456)
.+|.+.++++.+ .+++++++++++|++.+++++... | + +|++.+-+|++....+...+
T Consensus 86 ~~l~~~l~~~~~--------~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~----~vi~~~~~~HG~~~~~~~~~ 153 (401)
T PRK00854 86 APLYEELAALTG--------SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQA----EIIVCADNFHGRTLSIVGFS 153 (401)
T ss_pred HHHHHHHHhhCC--------CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCc----eEEEECCCcCCccHHHHhcc
Confidence 567777777653 248999999999999999988531 2 3 78998888888654443322
Q ss_pred C-------------eEeeec-cCcccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCC
Q 012785 213 S-------------RLYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWP 266 (456)
Q Consensus 213 ~-------------~~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~ 266 (456)
. .+..++ .|.+.++. .++++|++++|+||+|.+++ ++|+++|+++|+||+|.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~ 233 (401)
T PRK00854 154 TDPDARGGFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL 233 (401)
T ss_pred CCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 1 111222 25555543 36789999999999999886 2799999999999999864
Q ss_pred CCCCC--C---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 267 QYTSI--T---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 267 ~~~~~--~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
.+.+. . .....++.+ +||.++-..+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.+
T Consensus 234 g~~g~~~~~~~~g~~~D~~~--~~K~l~gg~~~ig~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~---- 306 (401)
T PRK00854 234 GRTGKLLAEEHEGIEADVTL--IGKALSGGFYPVSAVLSN-SEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTE---- 306 (401)
T ss_pred CCCchHhHHhhcCCCCCEEE--ecccccCCccCeEEEEEc-HHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHH----
Confidence 44431 1 111223443 479998333799999996 88888876555556788899999999999985322
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc--cccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCC
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF--SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNK 417 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~g 417 (456)
+...+.++++++++.+.|++++.. ...++.|.+ +.+.-.++ ....+.+.|.++|
T Consensus 307 ---------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~-------------~~i~~~~~~~~~~~~~~~L~~~G 364 (401)
T PRK00854 307 ---------EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLM-------------LAVELEPEAGGARQYCEALKERG 364 (401)
T ss_pred ---------cCHHHHHHHHHHHHHHHHHhhccCceEEEeccceE-------------EEEEEecCchhHHHHHHHHHHCC
Confidence 124677888888888888876421 112333443 33222222 3566778888899
Q ss_pred EEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 418 ILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
|.+.+. ..+++|++.. .+++++++++++|++++.
T Consensus 365 V~v~~~-----~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 365 LLAKDT-----HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred eEEecC-----CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 999762 3579999964 599999999999998763
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=189.34 Aligned_cols=282 Identities=13% Similarity=0.093 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
..+|++++|++.+. ...++++ ++++++.+++.+++++|| +|+++.|+|......+ ...|+++..
T Consensus 63 ~~~Le~~lA~~~g~-------~~~i~~~-sG~~Ai~~~l~all~~Gd----~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 63 RTALEEQLAALEGG-------AYGRAFS-SGMAATDCLLRAVLRPGD----HIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred HHHHHHHHHHHhCC-------CceEEeC-CHHHHHHHHHHHHhCCCC----EEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 48999999999874 2345554 557999999999999999 9999999999644332 235777666
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.. .++ ..+.+++++|+||.
T Consensus 131 ~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~--~~gaDivv~S~sK~ 208 (388)
T PRK07811 131 VDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL--ALGADVVVHSTTKY 208 (388)
T ss_pred eCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch--hhCCcEEEecCcee
Confidence 553 5555543 36899999999999999866 378999999999999985422 222 23456999999999
Q ss_pred cCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++.+| .+.||++++++++.++++..+.......+++.+..+...|+ .+....++..++...+.+
T Consensus 209 l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~---------------tl~~R~~~~~~na~~la~ 273 (388)
T PRK07811 209 IGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK---------------TLAVRMDRHSENAEAVAE 273 (388)
T ss_pred ecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC---------------cHHHHHHHHHHHHHHHHH
Confidence 98654 57899998768888888776654455566665554444443 244455666778889999
Q ss_pred HHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC---------------
Q 012785 367 AVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG--------------- 427 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg--------------- 427 (456)
.|++++.+.....+|.- +....+.....+..+.++++++.+...+.+..-.+. ..|..+|
T Consensus 274 ~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~-~~~~s~G~~~sl~~~~~~~~~~ 352 (388)
T PRK07811 274 FLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVF-TLAESLGGVESLIEHPSAMTHA 352 (388)
T ss_pred HHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcc-eeeccCCCCcceEeCCcccCcc
Confidence 99988755422222210 011111122234456677764444444444443331 1122221
Q ss_pred --------CCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 428 --------FSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 --------~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..++.||||++. |+.+.+++.|.+.|
T Consensus 353 ~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al 386 (388)
T PRK07811 353 STAGSQLEVPDDLVRLSVGI--EDVADLLADLEQAL 386 (388)
T ss_pred cCCHhhcCCCCCEEEEEeCC--CCHHHHHHHHHHHh
Confidence 125789999964 34555666666655
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=187.47 Aligned_cols=205 Identities=11% Similarity=0.104 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh---hhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT---DCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~---~~~g~~~~~~ 218 (456)
..+|++.+|++++. +++++++|+++|+..++.+++++|| +|+++.|+|..+...+ ...|+++..+
T Consensus 55 ~~~lE~~lA~l~g~--------~~~l~~~sG~~Ai~~~l~~ll~~GD----~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~ 122 (385)
T PRK08574 55 LRPLEEALAKLEGG--------VDALAFNSGMAAISTLFFSLLKAGD----RVVLPMEAYGTTLRLLKSLEKFGVKVVLA 122 (385)
T ss_pred HHHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHhhccCcEEEEE
Confidence 48999999999862 4677888899999999999999999 9999999999987666 4458887776
Q ss_pred ccCcccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCcccc
Q 012785 219 AGDAKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~d~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
..|.+.++. . ++++|++++|+||||.+++ ++|+++|+++|+|++|..+ .+.++ ..+.+++++|+||.+
T Consensus 123 ~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l--~~GaDivv~S~sK~l 200 (385)
T PRK08574 123 YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL--RHGADFVVHSLTKYI 200 (385)
T ss_pred CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh--hhCCcEEEeeCceee
Confidence 667666543 3 6899999999999999987 4789999999999999643 22333 235689999999999
Q ss_pred CCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+.+|-.+ |++++.++++.++++..+.......+++....+...|+ .+....++..++...+.+.
T Consensus 201 ~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~---------------tL~~R~~~~~~na~~la~~ 265 (385)
T PRK08574 201 AGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK---------------TLEVRFERQCRNAMAIAEF 265 (385)
T ss_pred cCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC---------------cHHHHHHHHHHHHHHHHHH
Confidence 7677664 76777668898988877765566666665555444443 2334455556677888999
Q ss_pred HHhcCCcc
Q 012785 368 VQKSGLFS 375 (456)
Q Consensus 368 L~~~~~~~ 375 (456)
|++++.+.
T Consensus 266 L~~~p~v~ 273 (385)
T PRK08574 266 LSEHPKVA 273 (385)
T ss_pred HHcCCCcC
Confidence 99887554
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=189.03 Aligned_cols=289 Identities=12% Similarity=0.104 Sum_probs=186.5
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh---
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--- 205 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--- 205 (456)
+.|+.+. ..+|++++|++.+. +..+++++++.++.+++.+++.+|| +|+++.|.|....
T Consensus 54 ~r~~~p~------~~~le~~lA~l~g~--------~~av~~~sG~~Ai~~~l~al~~~Gd----~Vi~~~~~y~~t~~~~ 115 (391)
T TIGR01328 54 SRLGNPT------VSNLEGRIAFLEGT--------EAAVATSSGMGAIAATLLTILKAGD----HLISDECLYGCTFALL 115 (391)
T ss_pred eCCCCch------HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCC----EEEEecCcchHHHHHH
Confidence 3455554 47899999999974 2456777777899999999999999 9999999887543
Q ss_pred -hhhhhcCCeEeeeccC-cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCC
Q 012785 206 -SITDCVKSRLYKWAGD-AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPA 275 (456)
Q Consensus 206 -~~~~~~g~~~~~~~~d-~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~ 275 (456)
..+...|+++..++.+ .+.++. .++++|++++|+||+|.+.+ ++|+++|+++|+|++|..+.. ..+...
T Consensus 116 ~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~-~~~~~~ 194 (391)
T TIGR01328 116 EHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPML-TNPVAL 194 (391)
T ss_pred HHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhcc-CCchhc
Confidence 3345578888777663 455543 36799999999999999876 378999999999999985321 112233
Q ss_pred CCcEEEecCccccCCCCceE-EEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
..+++++|+||.+|.+|.++ |+++. +++++++++..... .....+++....+...|+ .+..
T Consensus 195 g~Divv~S~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~---------------tl~~ 258 (391)
T TIGR01328 195 GVDVVVHSATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLILRGLK---------------TLNI 258 (391)
T ss_pred CCCEEEccccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcC---------------cHHH
Confidence 55699999999999889875 55555 58988888765322 223445555544444333 2334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC-
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG- 427 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg- 427 (456)
..++..++.+.+.+.|++++.++....+|.. ....++.....+..+-++++++.+.+.+.+..-.+.. .+..+|
T Consensus 259 r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~-~~~s~G~ 337 (391)
T TIGR01328 259 RMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIR-LAVSLGD 337 (391)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcce-EecCCCC
Confidence 5666778888899999988765433222211 0111122223344566677544444444444433321 121121
Q ss_pred -------------------------CCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 428 -------------------------FSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 -------------------------~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..++.||||++. |+.+.+++.|.+.|
T Consensus 338 ~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al 388 (391)
T TIGR01328 338 AETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL--EDADDLIADLKQAL 388 (391)
T ss_pred CcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHHH
Confidence 124689999964 34555666666554
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=192.36 Aligned_cols=262 Identities=12% Similarity=0.014 Sum_probs=176.4
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCe----------------Eeeecc------
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSR----------------LYKWAG------ 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~----------------~~~~~~------ 220 (456)
+.+++++++++|++.+++.... .|.. +|+...-+|++....+...... .++++.
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRP---GVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGL 171 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCC---cEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccc
Confidence 5899999999999999987643 2321 7999999999987655443110 011110
Q ss_pred ---------Cccccc--------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC--
Q 012785 221 ---------DAKRFN--------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT-- 272 (456)
Q Consensus 221 ---------d~~~l~--------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~-- 272 (456)
+.+.++ .++..++++..-+.-+|..++ ++|+++|+++|+||+|.+..+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a 251 (420)
T TIGR00700 172 LDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFA 251 (420)
T ss_pred cccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHH
Confidence 011221 124567777555767787765 3899999999999999976544411
Q ss_pred -CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 273 -YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 273 -~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
...+....+.+|||.++ +|+|+||++++ +++++.+.......+++.++++|.++.+.|+.+.++ ...+
T Consensus 252 ~~~~~~~pDi~~lsK~l~-~G~pig~v~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~---------~~~~ 320 (420)
T TIGR00700 252 CEHEGPEPDLITTAKSLA-DGLPLSGVTGR-AEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESE---------GLIE 320 (420)
T ss_pred HhhcCCCCCEEEeecccc-CCcceEEEEec-HHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhc---------cHHH
Confidence 11222333667999999 99999999997 999888876556679999999999999988765443 2333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-c-----c---HHHHHHHHHhCCEEeec
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-Q-----E---IEDCESFLKGNKILTRS 422 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-~-----~---~~~~~~~l~~~gI~v~p 422 (456)
+.++.-+..++.+.+..+.++.+...++.|. ++|+.+. . + ...+.+.+.++||.+.|
T Consensus 321 ~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~--------------~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p 386 (420)
T TIGR00700 321 RARQIGRLVTDRLTTLKAVDPRIGDVRGLGA--------------MIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLT 386 (420)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEeeccce--------------EEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEec
Confidence 3333333333444444444444444445544 5677651 1 1 23455666799999999
Q ss_pred CCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 423 GKHFGFSPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 423 g~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
+..|+ +++||+++. +++++++++++|.++++
T Consensus 387 ~~~f~---~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 387 CGMFG---NIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred cCCCC---CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 88774 799999853 89999999999998863
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-21 Score=194.07 Aligned_cols=319 Identities=12% Similarity=0.114 Sum_probs=209.6
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHH---H-HhcCccCCCceEEEcc
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLH---K-VVGNAITENHHIVVGT 170 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~---~-~~g~~~~~~~~I~~t~ 170 (456)
.++.++.|.|+...|..+..... ...+ .+.|.+..+ ...+.++++++++. . ..|. +.+++++|+
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~----~~~~--~~~y~~~~~---~~~~g~~~~~~e~~~~la~l~g~---~~~~v~~~~ 136 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIIS----RSEF--YTAYTPYQP---EISQGTLQAIFEYQTMICELTGM---DVANASMYD 136 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHh----chhH--HHhcCCCCC---ccchHHHHHHHHHHHHHHHHhCC---CcceEEecC
Confidence 57789999998877755543211 1111 223544110 00234555555332 2 2333 235799999
Q ss_pred CHHHHHHHHHHHhc-CCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEeeeccCc-----ccccc---CCCeEEEEcC
Q 012785 171 GSTQLFQAALYALS-SQDASEPISVVSAAPYYSSYPSITDC----VKSRLYKWAGDA-----KRFNK---DGPYIELVTS 237 (456)
Q Consensus 171 G~~~al~~~~~~l~-~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~~~d~-----~~l~~---~~~~~i~v~~ 237 (456)
|+++++..++.++. .+|| +|++++|.|+.+...++. .|.+++.++.|. +.++. .+++++++++
T Consensus 137 g~t~~~~~~~~a~~~~~g~----~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~v~l~~ 212 (447)
T PRK00451 137 GATALAEAALMAVRITKRK----KVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAAVVVQY 212 (447)
T ss_pred cHHHHHHHHHHHHHhcCCC----EEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEEEEEEC
Confidence 99999999988874 6888 999999999998887665 588888777653 33332 3678999999
Q ss_pred CCCCCcccch-----HHhhhcCcEEEe--eecCCCCCCCCCCCCCCCcEEEe---cCccccCCCCceEEEEEEeCHHHHH
Q 012785 238 PNNPDGSVRQ-----SVVNRSGGILVH--DLAYYWPQYTSITYPADHDLMLF---TVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 238 P~NPtG~~~~-----~l~~~~~~~iI~--De~y~~~~~~~~~~~~~~~i~i~---S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
| ||||.+.+ ++|+++|+++|+ |.+..+ ....+...+.+++++ +|||.+++.|.|+||++++ +++++
T Consensus 213 p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~g--~~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~-~~~~~ 288 (447)
T PRK00451 213 P-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLG--LLKPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATR-KKLVR 288 (447)
T ss_pred C-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHhc--cCCCcccCCCCEEEECCCcCCCCCCCCCCCchHHHhh-HHHHh
Confidence 9 89999976 489999999988 433221 111123445677776 7888888889999999997 77777
Q ss_pred HH----------------------------HHHHhhccCcCChHHH-HHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 308 KM----------------------------TKYIELNTIGVSKDSQ-LRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 308 ~l----------------------------~~~~~~~~~~~s~~~q-~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
.+ +........+.+...| .++...++.+ + ++.+++.++++.
T Consensus 289 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~--~--------~~g~~~~~~~~~ 358 (447)
T PRK00451 289 QMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLL--G--------PEGLRELAEQNH 358 (447)
T ss_pred hCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHH--C--------HHHHHHHHHHHH
Confidence 63 1111112233333334 3333334321 1 456888999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEe-ecCCCCCC-CCCeEEEE
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILT-RSGKHFGF-SPKYVRIS 436 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v-~pg~~fg~-~~~~iRis 436 (456)
++++++.+.|++++++++. .+.+.. ++.++++.+.+.+.+.|.++||.+ .++..|+. ..+++|++
T Consensus 359 ~~~~~l~~~L~~~~g~~~~--~~~~~~-----------~~~v~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs 425 (447)
T PRK00451 359 QKAHYLAERLAEIGGVELF--DGPFFN-----------EFVVRLPKPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVC 425 (447)
T ss_pred HHHHHHHHHHhhcCCEEec--CCCeEE-----------EEEEecCCCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEe
Confidence 9999999999988766553 233300 223555435567788888888763 45666642 25799999
Q ss_pred ec--CChhHHHHHHHHHHhhhC
Q 012785 437 ML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 437 ~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+. .++++++++++.|++++.
T Consensus 426 ~~~~~t~e~i~~l~~~L~~~~~ 447 (447)
T PRK00451 426 VTEKRTKEDIDALVAALGEVLA 447 (447)
T ss_pred cCCCCCHHHHHHHHHHHHHHhC
Confidence 86 489999999999998763
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=191.53 Aligned_cols=277 Identities=15% Similarity=0.150 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---CCCCCCCcEEEEeCCCCCChhhh---hhhcCCeEe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---SQDASEPISVVSAAPYYSSYPSI---TDCVKSRLY 216 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~~gd~~~~~Vlv~~P~y~~~~~~---~~~~g~~~~ 216 (456)
.++|+.++++++. ++++|++|+|+++++++++..+. .+++ +|++....|+.+... ++..|.++.
T Consensus 45 ~~~r~~la~~~g~------~~~~i~~t~~~t~a~~~al~~~~~~~~~~~----~vv~~~~~~~s~~~~~~~~~~~G~~v~ 114 (379)
T TIGR03402 45 EEAREQVAKLLGA------EPDEIIFTSGGTESDNTAIKSALAAQPEKR----HIITTAVEHPAVLSLCQHLEKQGYKVT 114 (379)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCcHHHHHHHHHHHHHHhcCCCC----eEEEcccccHHHHHHHHHHHHcCCEEE
Confidence 5677778888764 45789999999999999998764 3456 899988888766543 334588888
Q ss_pred eeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEE
Q 012785 217 KWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLML 281 (456)
Q Consensus 217 ~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i 281 (456)
.++.+ .+.++. .+++++++++++||||.+++ ++|+++|+++|+|+++.... .++. ...+-++++
T Consensus 115 ~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~-~~~~~~~~~~D~~~ 193 (379)
T TIGR03402 115 YLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGK-IPIDLKEMNIDMLS 193 (379)
T ss_pred EEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccc-cccCcccCCCCEEE
Confidence 77654 333332 36789999999999999988 38899999999999998532 2222 223457888
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
.|..|.+|.+| +|+++++ ++.. +.... .......+.....++.+.++.. .++++...
T Consensus 194 ~s~~K~~gp~G--~g~l~v~-~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-----------~~~~~~~~ 257 (379)
T TIGR03402 194 LSGHKLHGPKG--VGALYIR-KGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELA-----------TEHLEEEN 257 (379)
T ss_pred EcHHHcCCCCc--eEEEEEC-CCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHH-----------HHhHHHHH
Confidence 88999888677 8888886 4321 11111 0112233444444455555521 34567777
Q ss_pred HHHHHHHHHHHHHHHh-cCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCC----
Q 012785 355 HQMSTRWKQLRMAVQK-SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFS---- 429 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~-~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~---- 429 (456)
+++++.++.+.+.|++ ++.+.+..+.... .+....+|++.. +.+.+...|.++||.+++|..|...
T Consensus 258 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~l~~~gI~v~~g~~c~~~~~~~ 328 (379)
T TIGR03402 258 TRVRALRDRLEAGLLARIPDARLNGDPTKR--------LPNTVNISFEYI-EGEAILLLLDMEGICASSGSACTSGSLEP 328 (379)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEeCCCccC--------CCCEEEEEecCC-CHHHHHHhhccCCEEEEchhhcCCCCCCc
Confidence 8888889999998885 6655554322100 011113455433 4567778888999999999877321
Q ss_pred --------------CCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 430 --------------PKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 --------------~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+.+|+|+.. +++|++++++.|++++
T Consensus 329 ~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~ 370 (379)
T TIGR03402 329 SHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPII 370 (379)
T ss_pred CHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999875 8999999999998875
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=188.45 Aligned_cols=290 Identities=14% Similarity=0.146 Sum_probs=191.5
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCC----CCh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYY----SSY 204 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y----~~~ 204 (456)
+.|+.+. ..+|++.+|++.+. ++.+++++++.++..++.+++++|| +|+++...| ..+
T Consensus 65 ~r~~~p~------~~~le~~lA~l~g~--------~~al~~~sG~~Ai~~~l~all~~Gd----~Vl~~~~~~~~t~~~~ 126 (403)
T PRK07810 65 SRYGNPT------VSMFEERLRLIEGA--------EACFATASGMSAVFTALGALLGAGD----RLVAARSLFGSCFVVC 126 (403)
T ss_pred eCCCCch------HHHHHHHHHHHhCC--------CcEEEECChHHHHHHHHHHHhCCCC----EEEEccCCcchHHHHH
Confidence 3466665 48999999999863 3666777777898889988999999 999988555 444
Q ss_pred hhhhhhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCC
Q 012785 205 PSITDCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYP 274 (456)
Q Consensus 205 ~~~~~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~ 274 (456)
...++..|+++..++. |.+.++. .++++|++++|+||||.+.+ ++|+++++++|+|++|..+.. .++ .
T Consensus 127 ~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~--~ 204 (403)
T PRK07810 127 NEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGL--P 204 (403)
T ss_pred HHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChh--h
Confidence 5566778999887765 4455543 36799999999999999876 378999999999999985422 233 2
Q ss_pred CCCcEEEecCccccCCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 275 ADHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
.+.+++++|++|.++..|.++ ||++++++.+.++++..........+++.++++...|+ .+...
T Consensus 205 ~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~---------------tl~~R 269 (403)
T PRK07810 205 LGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLE---------------TLALR 269 (403)
T ss_pred cCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC---------------cHHHH
Confidence 356899999999998789998 77877633344456665555566788888887777665 34455
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCc----cHHHHHHHHHhCC--------
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNK-------- 417 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~g-------- 417 (456)
.++..++...+.+.|++++.+.....+|.- +...++.....+..+.+++++ +.+.+.+.+..-.
T Consensus 270 ~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~sl 349 (403)
T PRK07810 270 VRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNL 349 (403)
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccC
Confidence 566667777788899988765433322110 001111111223345556653 2344444444322
Q ss_pred -----EEeecCC----CC--------CCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 418 -----ILTRSGK----HF--------GFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 -----I~v~pg~----~f--------g~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+...|+. .+ |..++.+|||++. |+.+.+++.|.+.|
T Consensus 350 G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGl--E~~~dli~dl~~Al 402 (403)
T PRK07810 350 GDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGL--EDTDDLIADLDRAL 402 (403)
T ss_pred CCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHhh
Confidence 2233332 11 2235789999854 45666777777654
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=191.87 Aligned_cols=257 Identities=16% Similarity=0.148 Sum_probs=176.5
Q ss_pred ceEEEccCHHHHHHHHHHHhcC----CCC-CCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeeccCcc
Q 012785 164 HHIVVGTGSTQLFQAALYALSS----QDA-SEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWAGDAK 223 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~----~gd-~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~d~~ 223 (456)
+.+++++++++|++.+++.... .|. ....+|+...-+|++....+..... ..++++ |.+
T Consensus 99 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-d~~ 177 (408)
T PRK04612 99 EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFN-DVE 177 (408)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCC-CHH
Confidence 6899999999999999987653 121 0011799999999998765443211 111222 444
Q ss_pred cccc---CCCeEEEEcCCCCCCcccch----------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccc
Q 012785 224 RFNK---DGPYIELVTSPNNPDGSVRQ----------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKS 287 (456)
Q Consensus 224 ~l~~---~~~~~i~v~~P~NPtG~~~~----------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~ 287 (456)
.++. .+..+.++..|.+++|.+++ ++|+++|+++|+||+|.+..+.+.. ...+.+..+.||||.
T Consensus 178 ~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~ 257 (408)
T PRK04612 178 ALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKA 257 (408)
T ss_pred HHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcch
Confidence 4432 23345556688888887765 2899999999999999875444421 123456778999999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
++ +|+|+||++++ +++++.+.......+++.+++.+.++.+.|+.+.+. ...++++++.+.+.+.
T Consensus 258 l~-~G~piga~~~~-~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~-------------~l~~~~~~~g~~l~~~ 322 (408)
T PRK04612 258 LG-GGFPIGAMLAG-PKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASP-------------QIAANVARQSAALRAG 322 (408)
T ss_pred hc-CCCceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHH
Confidence 99 99999999997 888888776555678889999999999999876542 2334444444444444
Q ss_pred HHh----cCCccccCCCCcccccccccCCCCCceEEeecC----ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec-
Q 012785 368 VQK----SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML- 438 (456)
Q Consensus 368 L~~----~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~- 438 (456)
|++ .+.+...++.|.+ +.+.+. .....+.+.+.++||.+.+. +.+.+|+...
T Consensus 323 l~~l~~~~~~i~~vrg~Gl~--------------~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~-----g~~~lRl~Ppl 383 (408)
T PRK04612 323 LEALNAEFGVFAQVRGRGLM--------------LGAVLAPAHAGQAGAILDLAAEHGLLLLQA-----GPDVLRFVPAL 383 (408)
T ss_pred HHHHHhhCCCeeeeeccceE--------------EEEEecCchhhHHHHHHHHHHHCCeEEeeC-----CCCEEEEcCCc
Confidence 443 3333344555544 444442 12456778889999999872 3578999843
Q ss_pred -CChhHHHHHHHHHHhhh
Q 012785 439 -DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 439 -~~~e~i~~~l~~L~~~l 455 (456)
.+++++++++++|.+.+
T Consensus 384 ~it~eeid~~l~~l~~~l 401 (408)
T PRK04612 384 NLTDAELADGLARLRLAL 401 (408)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 48999999999998876
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-20 Score=183.63 Aligned_cols=288 Identities=15% Similarity=0.168 Sum_probs=190.3
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh----
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY---- 204 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~---- 204 (456)
++|+.+. ..+|++.++++.+. +.+++++++++++.+++.+++++|| +|+++.+.|...
T Consensus 49 ~r~~~p~------~~~le~~la~l~g~--------~~~~~~~sG~~Ai~~al~al~~~Gd----~Vl~~~~~~~~t~~~~ 110 (380)
T TIGR01325 49 SRYANPT------VAAFEERIAALEGA--------ERAVATATGMSAIQAALMTLLQAGD----HVVASRSLFGSTVGFI 110 (380)
T ss_pred ecCCCch------HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCC----EEEEecCCcchHHHHH
Confidence 3466554 48999999998853 4678899999999999999999999 999999988763
Q ss_pred hhhhhhcCCeEeeeccC-cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCC
Q 012785 205 PSITDCVKSRLYKWAGD-AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYP 274 (456)
Q Consensus 205 ~~~~~~~g~~~~~~~~d-~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~ 274 (456)
...++..|.++..++.+ .+.++. .++++|++++|+||+|.+.+ ++|+++|+++|+|++|..+. ..++ .
T Consensus 111 ~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl--~ 188 (380)
T TIGR01325 111 SEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL--K 188 (380)
T ss_pred HHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch--h
Confidence 33556678888777653 455543 36799999999999999976 48899999999999997532 2222 2
Q ss_pred CCCcEEEecCccccCCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 275 ADHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
.+.+|++.|+||.++.+|.++ |+++++ +++++.++..........++.....+...+ +.+...
T Consensus 189 ~g~Divv~S~sK~l~g~g~~~gG~vv~~-~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l---------------~tl~~r 252 (380)
T TIGR01325 189 LGADVVVYSATKHIDGQGRVMGGVIAGS-EELMAEVAVYLRHTGPAMSPFNAWVLLKGL---------------ETLSLR 252 (380)
T ss_pred hCCCEEEeeccceecCCCCeEEEEEEeC-HHHHHHHHHHHHhhCCCCCHHHHHHHHhcc---------------CcHHHH
Confidence 356799999999998788887 667765 888888887765444445555444333322 345556
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCc----ccccccccCCCCCceEEeecCccHHHHHHHHHhCCE---EeecCCC-
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQ----FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI---LTRSGKH- 425 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI---~v~pg~~- 425 (456)
.++..++++.+.+.|++++.++....++. .+...++.....+..+.+.++ +.+.+.+.+..-.+ .+.-|..
T Consensus 253 ~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~-~~~~~~~f~~~l~~~~~~~s~G~~~ 331 (380)
T TIGR01325 253 MQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA-DRAAAWKVLDAVELVSITNNLGDAK 331 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHHHcCCcceEcccCCCCC
Confidence 67777888899999998875543222110 011111222223345666775 33434444433332 2211210
Q ss_pred ---------------------CCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 426 ---------------------FGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 ---------------------fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.|..++.||||++. |+.+.+++.|++.|
T Consensus 332 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al 380 (380)
T TIGR01325 332 STITHPATTTHGRMQPEERAAAGIGDGLVRLSVGL--EDVDDLIADLKRAL 380 (380)
T ss_pred eeeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHhhC
Confidence 11135789999854 34566677776653
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=185.06 Aligned_cols=212 Identities=10% Similarity=0.097 Sum_probs=160.7
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS-- 206 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~-- 206 (456)
+.|+++. ..+|++.++++.+ .+++++++|+++++.+++.+++++|| +|++++|+|..+..
T Consensus 60 ~r~~~pt------~~~Le~~lA~l~g--------~~~~l~~~sgt~Ai~~~l~al~~~GD----~Vl~~~~~y~~~~~~~ 121 (394)
T PRK07050 60 GLHATPT------SLALAQRLAEIEG--------GRHALLQPSGLAAISLVYFGLVKAGD----DVLIPDNAYGPNRDHG 121 (394)
T ss_pred CCCCCHH------HHHHHHHHHHHhC--------CCeEEEeccHHHHHHHHHHHHhCCCC----EEEEecCCcccHHHHH
Confidence 3455554 4788888888875 35899999999999999999999999 99999999998764
Q ss_pred --hhhhcCCeEeeeccC-ccccc---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCC
Q 012785 207 --ITDCVKSRLYKWAGD-AKRFN---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYP 274 (456)
Q Consensus 207 --~~~~~g~~~~~~~~d-~~~l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~ 274 (456)
.+...|+++..++.+ .+.++ ..++++|++++|+||+|...+ ++|+++|+++|+|++|..+. +.++ .
T Consensus 122 ~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l--~ 199 (394)
T PRK07050 122 EWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPF--E 199 (394)
T ss_pred HHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHH--H
Confidence 456679888877542 23343 246899999999999998765 37889999999999997532 2232 2
Q ss_pred CCCcEEEecCccccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 275 ADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
.+.+|++.|+||.++ +.+++.|++++.+++++++++..+.....+.++.....+...|+ .+...
T Consensus 200 ~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~---------------tl~~R 264 (394)
T PRK07050 200 HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLP---------------SLQVR 264 (394)
T ss_pred cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCC---------------cHHHH
Confidence 345799999999995 56678999998778999999888776677788777665554443 22234
Q ss_pred HHHHHHHHHHHHHHHHhcCCcc
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
.++..++...+.+.|++++.+.
T Consensus 265 l~~~~~~a~~la~~L~~~p~v~ 286 (394)
T PRK07050 265 LAAHDRSALEVAEWLKARPEIA 286 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 4555666678889999886544
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=191.18 Aligned_cols=252 Identities=13% Similarity=0.071 Sum_probs=171.0
Q ss_pred ceEEEccCHHHHHHHHHHHhcC----------CCCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeee
Q 012785 164 HHIVVGTGSTQLFQAALYALSS----------QDASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKW 218 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~----------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~ 218 (456)
+.+++++++++|.+.+++.+.. .++ +|++.+-.|++.......... ..+++
T Consensus 89 ~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~----~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (400)
T PTZ00125 89 DKVLPMNSGAEAGETALKFARKWGYEVKGIPENQA----KIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY 164 (400)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCC----eEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC
Confidence 4788999999999999997742 223 799999999887654433211 11122
Q ss_pred ccCcccccc----CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCC--CC---CCCCCcEE
Q 012785 219 AGDAKRFNK----DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTS--IT---YPADHDLM 280 (456)
Q Consensus 219 ~~d~~~l~~----~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~--~~---~~~~~~i~ 280 (456)
.|.+.++. .++++|+++.++||||.+++ ++|+++|+++|+||+|.+..+.+ +. .....++
T Consensus 165 -~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~- 242 (400)
T PTZ00125 165 -NDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDI- 242 (400)
T ss_pred -CCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCE-
Confidence 15555542 35788989888999999886 27999999999999997543322 11 1111223
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
.++||.++.+++|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.++ + ..++.+++
T Consensus 243 -~~~sK~l~~g~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~---------~----~~~~~~~~ 307 (400)
T PTZ00125 243 -VLLGKALSGGLYPISAVLAN-DDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEE---------K----LAENAQRL 307 (400)
T ss_pred -EEEcccccCCCcCcEEEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---------C----HHHHHHHH
Confidence 35789998433599999997 889888876555567889999999998888765432 1 22333344
Q ss_pred HHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCCCCCe
Q 012785 361 WKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 361 ~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~~~~~ 432 (456)
.+.+.+.|++. +.+...++.|. +.|+.++. ....+.+.|.++||.+.|+ ..++
T Consensus 308 ~~~l~~~l~~l~~~~~~~~~~~~~g~--------------~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----~~~~ 368 (400)
T PTZ00125 308 GEVFRDGLKELLKKSPWVKEIRGKGL--------------LNAIVFDHSDGVNAWDLCLKLKENGLLAKPT-----HDNI 368 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccE--------------EEEEEEccCcchHHHHHHHHHHHCCeEEeec-----CCCE
Confidence 44455555442 32222333333 56776642 3455667778899999985 3679
Q ss_pred EEEEec--CChhHHHHHHHHHHhhh
Q 012785 433 VRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
|||+.. .+++++++++++|.+++
T Consensus 369 lRi~~~~~~~~~~i~~~l~~l~~~l 393 (400)
T PTZ00125 369 IRFAPPLVITKEQLDQALEIIKKVL 393 (400)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHH
Confidence 999953 59999999999998875
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=192.07 Aligned_cols=261 Identities=15% Similarity=0.073 Sum_probs=171.4
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCe--------------E--eeecc---Ccc
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSR--------------L--YKWAG---DAK 223 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~--------------~--~~~~~---d~~ 223 (456)
+.++++++++||.+.+++.... .|.. +|+...-+|++....+...... + ++++. ...
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQ---GIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPE 192 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCC---cEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccc
Confidence 5899999999999999987643 2222 7999999999987655443110 0 11110 000
Q ss_pred -------------cc--------ccCCCeEEEEcCCCCCC-cccch---------HHhhhcCcEEEeeecCCCCCCCCCC
Q 012785 224 -------------RF--------NKDGPYIELVTSPNNPD-GSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT 272 (456)
Q Consensus 224 -------------~l--------~~~~~~~i~v~~P~NPt-G~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~ 272 (456)
.+ ...+..++++ .|-+.. |.+++ ++|+++|+++|+||+|.+..+.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~-EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~ 271 (451)
T PRK06918 193 GLTEEQYDDFMIEEFKNFFISEVAPETIAAVVM-EPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY 271 (451)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCCceEEEEE-CcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCce
Confidence 01 1123445555 665555 55454 2899999999999999975443311
Q ss_pred ---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 273 ---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 273 ---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
...+..--+.||||.++ +|+|+||++++ +++++.+.......+++.++++|.++.++|+.+.++. ..++
T Consensus 272 ~a~~~~~v~pDi~t~sK~l~-~G~pig~v~~~-~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~------~~~~ 343 (451)
T PRK06918 272 FAIEHFDVVPDLITVSKSLG-AGVPISGVIGR-KEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKEN------LNDR 343 (451)
T ss_pred ehhHhcCCCCCEEeeehhhc-CCCccEEEEEc-HHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCC------HHHH
Confidence 11111111668999999 99999999997 8998888766666789999999999999998765441 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec-------Cc--cHHHHHHHHHhCCEEe
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC-------EQ--EIEDCESFLKGNKILT 420 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~-------~~--~~~~~~~~l~~~gI~v 420 (456)
++.+.+.++++.+ +..++++.+...++.|++ |.|... ++ ....+.+.+.++||.+
T Consensus 344 ~~~~g~~l~~~l~---~l~~~~~~~~~vrg~G~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv 407 (451)
T PRK06918 344 AIELGKVVMNRFE---EMKNKYNCIGDVRGLGAM-------------CAFELVQDRKTKEPDKTLTANICKEANKRGLLL 407 (451)
T ss_pred HHHHHHHHHHHHH---HHHhhCCCceeeccceeE-------------EEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEE
Confidence 4444444443333 222233433344556766 554432 11 1345666778999999
Q ss_pred ecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 421 RSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 421 ~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.|+..|+ +++|++++ .+++++++++++|.+++
T Consensus 408 ~~~~~~~---~~lrl~p~l~~t~~~id~~l~~l~~~l 441 (451)
T PRK06918 408 LSAGTYG---NVIRVLMPLVITDEQLEEGLTIIEESL 441 (451)
T ss_pred eecCCCC---CEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 9987663 78999975 48999999999999876
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=188.18 Aligned_cols=268 Identities=17% Similarity=0.139 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcCC--
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVKS-- 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-- 213 (456)
.+|.+.++++.. .+.+++++++++|++.+++.+.. ++.. +|+..+-+|++....+...+.
T Consensus 80 ~~la~~L~~~~~--------~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~---~ii~~~~~yHG~~~~~~~~~~~~ 148 (397)
T TIGR03246 80 LRLAKKLVDATF--------ADKVFFCNSGAEANEAALKLARRYALDKHGADKS---EIVAFKNSFHGRTLFTVSVGGQP 148 (397)
T ss_pred HHHHHHHHhhCC--------CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCC---EEEEECCCcCCccHHHHHhcCCc
Confidence 456666665432 35899999999999999997731 2221 799999999987644433221
Q ss_pred -----------eEeeec-cCcccccc---CCCeEEEEcCCCCCCcccc-h--------HHhhhcCcEEEeeecCCCCCCC
Q 012785 214 -----------RLYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVR-Q--------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 214 -----------~~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~-~--------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
.+..++ .|.+.++. +++++|+++.++++.|... + ++|+++|+++|.||+|.+.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~ 228 (397)
T TIGR03246 149 KYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRT 228 (397)
T ss_pred ccccCCCCCCCceEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcc
Confidence 111222 15555543 3567777765555556553 2 3899999999999999765443
Q ss_pred CCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 270 SIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 270 ~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
+.. ...+-..-+.||||.+| .|+|+||++++ +++++.+.......+++.+++++.++.+.|+.+.+
T Consensus 229 G~~~a~~~~gv~pDi~t~~K~lg-gG~pigav~~~-~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~--------- 297 (397)
T TIGR03246 229 GELYAYMHYGVTPDILTSAKALG-GGFPIGAMLTT-TEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNT--------- 297 (397)
T ss_pred ccchhhhhcCCCCCEEEeehhhh-CCcceeEEEEc-HHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhh---------
Confidence 321 11111122448999998 89999999997 88988886554556788899999999999985422
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC----CccccCCCCcccccccccCCCCCceEEeecC----ccHHHHHHHHHhCCE
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSG----LFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----QEIEDCESFLKGNKI 418 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~~~l~~~gI 418 (456)
+...+.++++.+++.+.|+++. .+...++.|. ++.+.+. .....+.+.|.++||
T Consensus 298 ----~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~--------------~~~i~~~~~~~~~~~~~~~~l~~~Gv 359 (397)
T TIGR03246 298 ----PELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGL--------------LIGAVLTEAYQGKAKQFVNAAAEEGV 359 (397)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCce--------------EEEEEEcCchhhHHHHHHHHHHHCCe
Confidence 2356677777888888777643 1222223333 3344442 134567778889999
Q ss_pred EeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
.+.+. +.+++|++ +..+++++++++++|.+++
T Consensus 360 ~~~~~-----g~~~lR~~p~~~~t~~~i~~~~~~l~~~l 393 (397)
T TIGR03246 360 IALIA-----GPNVVRFAPSLVISDDDIDEGLARFERAI 393 (397)
T ss_pred EEeec-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99872 25789995 5459999999999999876
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=181.71 Aligned_cols=289 Identities=10% Similarity=0.100 Sum_probs=197.7
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD 209 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~ 209 (456)
+|+...+ ..+|++++|++++. ++.+++++|.+... .++.++.++|| .|+++++.|+.+...+.
T Consensus 38 ~yg~~~~-----~~~LE~~lA~~~g~-------e~al~~~sG~~a~~-~~i~~l~~~GD----~Vl~~~~~h~s~~~~~~ 100 (392)
T PLN03227 38 FYGTIDA-----HLELEQCMAEFLGT-------ESAILYSDGASTTS-STVAAFAKRGD----LLVVDRGVNEALLVGVS 100 (392)
T ss_pred ccCChHH-----HHHHHHHHHHHhCC-------CcEEEecCcHHHHH-HHHHHhCCCCC----EEEEeccccHHHHHHHH
Confidence 4665555 58999999999975 46788888887776 66677899999 99999999999988877
Q ss_pred hcCCeEeeecc-Ccccccc-----------------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC
Q 012785 210 CVKSRLYKWAG-DAKRFNK-----------------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP 266 (456)
Q Consensus 210 ~~g~~~~~~~~-d~~~l~~-----------------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~ 266 (456)
..+.+++.++. |.+.++. .++++|++.+|+||+|.+.+ ++|+++|+++|.||+|...
T Consensus 101 l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g 180 (392)
T PLN03227 101 LSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFG 180 (392)
T ss_pred HcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccccc
Confidence 77777765543 3322211 24688999999999999977 4899999999999999721
Q ss_pred --CCC--C------CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCC--hHHHHHHHHHHHh
Q 012785 267 --QYT--S------ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVS--KDSQLRAAKVLKV 334 (456)
Q Consensus 267 --~~~--~------~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s--~~~q~~a~~~L~~ 334 (456)
+.. + +....+.+|++.|+||.+|. +.||++++ +++++.++......+++.+ +..+.++.+.+..
T Consensus 181 ~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~---~gg~v~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~ 256 (392)
T PLN03227 181 TLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGS---VGGMTVGS-EEVVDHQRLSGSGYCFSASAPPFLAKADATATAG 256 (392)
T ss_pred ccCCCCCcHHHHcCCCCCCCceEEEeechhhhhc---cCcEEecC-HHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHH
Confidence 111 1 11123458999999998763 45898886 8888777655444455654 6667777766653
Q ss_pred hhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc---------
Q 012785 335 VSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE--------- 405 (456)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~--------- 405 (456)
+.. .+..+++++++.+++.+.|++.+.-.+....|++. -.....++.+.+.+.+.
T Consensus 257 ~~~------------~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~----~~~~~~~~i~~i~~~~~~~~~~~~~~ 320 (392)
T PLN03227 257 ELA------------GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLV----ITSDPISPIIYLRLSDQEATRRTDET 320 (392)
T ss_pred Hhc------------CHHHHHHHHHHHHHHHHHHHhcCCccccccccccc----cCCCCCCCEEEEEeCCHHHhhhhhhh
Confidence 211 13467778888889999887532111111122210 00122344555666431
Q ss_pred --HHHHHHHHHhCCEEeecCCC-----CC-CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 406 --IEDCESFLKGNKILTRSGKH-----FG-FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 --~~~~~~~l~~~gI~v~pg~~-----fg-~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
...+.+.+.++||.+.+... +. .++..+|+++.. ++|++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~ 380 (392)
T PLN03227 321 LILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAV 380 (392)
T ss_pred hHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 13677888899999975321 11 246789999875 9999999999999876
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=181.53 Aligned_cols=271 Identities=17% Similarity=0.136 Sum_probs=186.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 219 (456)
..+|++.++++++. ++.+++++|+ +++..++..+.. +|+ .|++....|..........|.++..++
T Consensus 92 ~~~le~~la~~~g~-------~~~~~~~SG~-~An~~ai~~l~~~~~g~----~I~~~~~~H~s~~~~~~~~g~~~~~~~ 159 (406)
T PRK13393 92 HVLLEAELADLHGK-------EAALLFTSGY-VSNWAALSTLGSRLPGC----VILSDELNHASMIEGIRHSRAEKRIFR 159 (406)
T ss_pred HHHHHHHHHHHhCC-------CcEEEeCCcH-HHHHHHHHHhhcCCCCC----EEEEccchhHHHHHHHHHcCCeEEEeC
Confidence 36788888888752 3456666665 688888887765 566 666666666666666677787776665
Q ss_pred -cCcccccc-------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCC----CCCCCCCC---CC-CCCc
Q 012785 220 -GDAKRFNK-------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYY----WPQYTSIT---YP-ADHD 278 (456)
Q Consensus 220 -~d~~~l~~-------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~----~~~~~~~~---~~-~~~~ 278 (456)
.|.+.++. .++++|++++++||+|.+.+ ++|+++++++|+||+|. ++...++. .. .+.+
T Consensus 160 ~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~ 239 (406)
T PRK13393 160 HNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLT 239 (406)
T ss_pred CCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCe
Confidence 24443321 25678999999999999987 38999999999999997 22111111 11 2246
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
|+++||||.+|++| ||++++ +++++.+...... .+.+.++..+.++.+.|+.+.+ .. ..+.+
T Consensus 240 i~~~tlsKa~g~~G---G~~~~~-~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~-----------~~-~~~~~ 303 (406)
T PRK13393 240 IIEGTLAKAFGVMG---GYITGS-AALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKA-----------SS-AERER 303 (406)
T ss_pred EEEEeCchhhcccC---ceeeCC-HHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhh-----------CH-HHHHH
Confidence 88899999999888 999886 8888888776432 2456677778888888874322 11 23456
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHh-CCEEeecCCCCC--CCCC
Q 012785 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKG-NKILTRSGKHFG--FSPK 431 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~-~gI~v~pg~~fg--~~~~ 431 (456)
++++++++.+.|++.+ +.+.++.+. ++.+.+++ ....+.+.|.+ +||.++++.... .+.+
T Consensus 304 ~~~~~~~l~~~L~~~g-~~~~~~~~~--------------i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~ 368 (406)
T PRK13393 304 HQDRVARLRARLDKAG-IPHLPNPSH--------------IVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTE 368 (406)
T ss_pred HHHHHHHHHHHHHHcC-CCcCCCCCC--------------eEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCc
Confidence 7788889999998764 333333333 44444432 33556666665 699999865332 2347
Q ss_pred eEEEEec--CChhHHHHHHHHHHhhh
Q 012785 432 YVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
++||++. .+++++++++++|++++
T Consensus 369 ~iRis~~~~~t~edid~l~~~l~~~~ 394 (406)
T PRK13393 369 RLRITPSPLHTDADIEHLVQALSEIW 394 (406)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 8999986 38999999999999875
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=184.36 Aligned_cols=282 Identities=14% Similarity=0.147 Sum_probs=191.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..++|+.++++++. .++++|++|+|++++++.++.+++++|| +|++..++|+.+.. .++..|.+++.
T Consensus 46 ~~~~~~~la~~~~~-----~~~~~v~~~~g~t~al~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 116 (376)
T TIGR01977 46 VEETRQLLAKLFNA-----PSSAHVVFTNNATTALNIALKGLLKEGD----HVITTPMEHNSVARPLECLKEQIGVEITI 116 (376)
T ss_pred HHHHHHHHHHHhCc-----CCCCeEEEeCCHHHHHHHHHHhccCCCC----EEEECcchhhHHHHHHHHHHHHcCcEEEE
Confidence 36888999998864 1235899999999999999999989999 99999999987643 44556888876
Q ss_pred eccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 218 WAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 218 ~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
++.+ .+.++. .+++++++++|+||||.+++ ++|+++|+++|+|+++.-.. .++. ...+-++++.
T Consensus 117 v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~-~~~~~~~~~~D~~~~ 195 (376)
T TIGR01977 117 VKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGV-IPIDMTELAIDMLAF 195 (376)
T ss_pred EecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCc-cCCCchhcCCCEEEe
Confidence 6643 333332 36789999999999999987 38899999999999997422 2221 2235679999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHH----------------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKY----------------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~----------------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
|+.|.++.|. -+|.+++.+...+..+... ..+.....+.....++.+.++.+.+
T Consensus 196 s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~--------- 265 (376)
T TIGR01977 196 TGHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEK--------- 265 (376)
T ss_pred cccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHH---------
Confidence 9999875332 2677776533211111100 0001122334444444555553322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhC-CEEeecCC
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGN-KILTRSGK 424 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~-gI~v~pg~ 424 (456)
.-.+.++++.++..+.+.+.|.+.+++++..+... ...+..+++.+++ +.+.+.+.|.++ ||.+.+|.
T Consensus 266 -~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~ 335 (376)
T TIGR01977 266 -IGIANIAKKECMLTEKLLNGLREINKVKIYGPADP---------ANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGL 335 (376)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc---------cccCCeEEEEECCCCHHHHHHHHhccCCEEEEccc
Confidence 12356677778888888888887765555432100 0112356667654 567788888776 99999988
Q ss_pred CCCC---------CCCeEEEEecC--ChhHHHHHHHHHHh
Q 012785 425 HFGF---------SPKYVRISMLD--RDENYNLFVQRLSK 453 (456)
Q Consensus 425 ~fg~---------~~~~iRis~~~--~~e~i~~~l~~L~~ 453 (456)
.+.. ..+.||+++.. ++++++.++++|++
T Consensus 336 ~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 336 HCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 6632 45799999875 89999999999986
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=181.69 Aligned_cols=271 Identities=10% Similarity=0.095 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhh---hhhcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSI---TDCVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~---~~~~g~~~ 215 (456)
.+|++.++++++ .+.+++++| +++...++..+. .+++. .|++.+..|++.... ....+.++
T Consensus 94 ~~l~~~la~~~~--------~~~~~~~sG-~~a~~~ai~~~~~~~~~~~~~---~vi~~~~~~H~s~~~~~~~~~~~~~v 161 (402)
T PRK07505 94 KDLEEALSELFG--------ASVLTFTSC-SAAHLGILPLLASGHLTGGVP---PHMVFDKNAHASLNILKGICADETEV 161 (402)
T ss_pred HHHHHHHHHHhC--------CCEEEECCh-HHHHHHHHHHHHhcccCCCCC---CEEEEchhhhHhHHhhhhhhhcCCeE
Confidence 566677776653 145656655 467777775543 22331 577888787764321 11124455
Q ss_pred eeecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CC---CC--CCCC-CCC
Q 012785 216 YKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQ---YT--SITY-PAD 276 (456)
Q Consensus 216 ~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~---~~--~~~~-~~~ 276 (456)
+.++. |.+.++. .+++++++++|+||||.+++ ++|+++++++|+||+|.. +. +. .+.. .++
T Consensus 162 ~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d 241 (402)
T PRK07505 162 ETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNE 241 (402)
T ss_pred EEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCC
Confidence 55543 5555543 24578889999999999987 389999999999999842 11 11 1112 467
Q ss_pred CcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc--CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 277 HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG--VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 277 ~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~--~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
++++++||||.+|.+| ||++++++++++.+.......+++ ++++++.++.+.++...+ +.+.+.+
T Consensus 242 ~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~----------~~~~~~~ 308 (402)
T PRK07505 242 RTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLS----------EELDQLQ 308 (402)
T ss_pred CeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhc----------cCcHHHH
Confidence 8999999999999776 898765588998888765544443 345677777777663222 2334455
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CC
Q 012785 355 HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SP 430 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~ 430 (456)
+.++++.+.+.+.+... ..|.+. .+.++.++. ....+.+.|.++||.++++..+.. +.
T Consensus 309 ~~l~~~~~~~~~~~~~~-------~~g~~~-----------~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~ 370 (402)
T PRK07505 309 QKLQNNIALFDSLIPTE-------QSGSFL-----------PIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGR 370 (402)
T ss_pred HHHHHHHHHHHHHHHhc-------CCCCCC-----------CEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCC
Confidence 55666655544433211 112110 023444432 345677888899999999743322 34
Q ss_pred CeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 431 KYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 431 ~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
++|||++. .++|++++++++|+++++
T Consensus 371 ~~lRi~~~~~~t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 371 AGLRIMFRASHTNDEIKRLCSLLKEILD 398 (402)
T ss_pred ceEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 79999987 399999999999998763
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=180.48 Aligned_cols=282 Identities=15% Similarity=0.130 Sum_probs=187.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP----SITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~ 217 (456)
..+|++.+|++++. + ..+++++|. .++.+++. ++++|| +|++++|.|+... ..++..|+++..
T Consensus 56 ~~~le~~lA~l~g~------~-~~v~~~sG~-~ai~~~l~-~l~~Gd----~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~ 122 (390)
T PRK08064 56 REALEDIIAELEGG------T-KGFAFASGM-AAISTAFL-LLSKGD----HVLISEDVYGGTYRMITEVLSRFGIEHTF 122 (390)
T ss_pred HHHHHHHHHHHhCC------C-CeEEECCHH-HHHHHHHH-HhCCCC----EEEEccCccchHHHHHHHHHHHcCCEEEE
Confidence 46889999999864 3 467777774 68888886 678899 9999999998533 345567998887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.. .++ ..+.+++++|+||.
T Consensus 123 v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~--~~g~Divv~S~tK~ 200 (390)
T PRK08064 123 VDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL--DLGADVVLHSATKF 200 (390)
T ss_pred ECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch--hhCCcEEEeeccee
Confidence 775 4555543 36799999999999999977 488999999999999985422 222 33568999999999
Q ss_pred cC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 TG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++ ++|+..|++++.+++++++++..+.......++.....+. + + -+.+....++..++...+.+
T Consensus 201 ~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~---~----g--------l~tl~~R~~~~~~~a~~la~ 265 (390)
T PRK08064 201 LAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVL---R----G--------LKTLHVRLEHSSETANKIAL 265 (390)
T ss_pred ccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHH---c----c--------cCcHHHHHHHHHHHHHHHHH
Confidence 85 5567788888866789999988876444444444444322 2 2 22455666777888888999
Q ss_pred HHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCE---EeecC------------CCCC
Q 012785 367 AVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI---LTRSG------------KHFG 427 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI---~v~pg------------~~fg 427 (456)
.|++++.+.....++.- ..+..+.....+..+.+.+++ .+.+...+.+.++ .+.-| .++.
T Consensus 266 ~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~-~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~ 344 (390)
T PRK08064 266 YLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS-EEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAA 344 (390)
T ss_pred HHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC-HHHHHHHHHhCCcceEcccCCCCcceeECCccccccc
Confidence 99988644221111100 111111122233345666653 4567777777777 55555 2221
Q ss_pred ----------CCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 428 ----------FSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 428 ----------~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
..++.+|+|++. .++.++.+.++|+++
T Consensus 345 ~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 345 MPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred CCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 135789999975 344555555555543
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=176.75 Aligned_cols=276 Identities=14% Similarity=0.170 Sum_probs=189.0
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
+.|+.+. ..+|++++|++.+ .+++++++|+++|+.+++. ++++|| +|+++.+.|......+
T Consensus 49 ~R~~~p~------~~~le~~lA~leg--------~~~~v~~~sG~aAi~~~l~-~l~~GD----~VI~~~~~yg~~~~~~ 109 (364)
T PRK07269 49 TRTKNPT------RAKLEETLAAIES--------ADYALATSSGMSAIVLAFS-VFPVGS----KVVAVRDLYGGSFRWF 109 (364)
T ss_pred eCCCCcc------HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHH-HhCCCC----EEEEecCCcCchHHHH
Confidence 3456655 4899999999985 3689999999999999995 668999 9999999998766544
Q ss_pred hhc---CCeEeeeccCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCC
Q 012785 209 DCV---KSRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPAD 276 (456)
Q Consensus 209 ~~~---g~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~ 276 (456)
... +...+.+..|.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.. .++ ...
T Consensus 110 ~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl--~~g 187 (364)
T PRK07269 110 NQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPI--ELG 187 (364)
T ss_pred HHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch--hhC
Confidence 332 1111234556666643 36899999999999998866 378899999999999875422 222 334
Q ss_pred CcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 277 HDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 277 ~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
-+++++|++|.++-+| .=.||+++.++++.++++..+.......+++..+.+...|+ .+....+
T Consensus 188 aDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~---------------tL~~r~~ 252 (364)
T PRK07269 188 ADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK---------------TLSLRME 252 (364)
T ss_pred CcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC---------------cHHHHHH
Confidence 5699999999996433 34688888668888888876654556678877777666555 3556667
Q ss_pred HHHHHHHHHHHHHHhcCCcc-cc-CCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHH----------hCCEEee
Q 012785 356 QMSTRWKQLRMAVQKSGLFS-VP-ELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLK----------GNKILTR 421 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~-~~-~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~----------~~gI~v~ 421 (456)
+.+++...+.+.|++++.+. +. ++.||+ +.+.+.+ ....+.+.++ .+.+.+.
T Consensus 253 ~~~~na~~~a~~L~~~p~v~~v~ypg~gg~--------------~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~ 318 (364)
T PRK07269 253 RSTANAQEVVAFLKKSPAVKEVLYTGKGGM--------------ISFKVADETRIPHILNSLKVFTFAESLGGVESLITY 318 (364)
T ss_pred HHHHHHHHHHHHHHhCCCccEEeCCCcCcE--------------EEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeC
Confidence 77888889999999887432 22 445555 3333332 1112222222 2344555
Q ss_pred cCCCC------------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 422 SGKHF------------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 422 pg~~f------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+..+ |..++.||+|++. |+.+.+++-|.+.|+
T Consensus 319 p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl--E~~~dli~dl~~al~ 363 (364)
T PRK07269 319 PTTQTHADIPAEVRHSYGLTDDLLRLSIGI--EDARDLIADLKQALE 363 (364)
T ss_pred CcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHhc
Confidence 64432 2246789999954 356667777777653
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=183.08 Aligned_cols=259 Identities=12% Similarity=0.044 Sum_probs=176.7
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCC----------------eEeeeccC-----
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKS----------------RLYKWAGD----- 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~----------------~~~~~~~d----- 221 (456)
+.+++++++++|++.+++.... .|.. +|+...-+|++....+...+. ..++++.+
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~ 178 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRP---GVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGIS 178 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCC---eEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccccc
Confidence 5889999999999999987653 2322 899999999997654433211 11223221
Q ss_pred ----ccccc--------cCCCeEEEEcCCCCCCcccc-h--------HHhhhcCcEEEeeecCCCCCCCCCC---C--CC
Q 012785 222 ----AKRFN--------KDGPYIELVTSPNNPDGSVR-Q--------SVVNRSGGILVHDLAYYWPQYTSIT---Y--PA 275 (456)
Q Consensus 222 ----~~~l~--------~~~~~~i~v~~P~NPtG~~~-~--------~l~~~~~~~iI~De~y~~~~~~~~~---~--~~ 275 (456)
.+.++ ..+.+++++...++|+|..+ + ++|+++|+++|+||+|.+.++.+.. . ..
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~ 258 (421)
T PRK09792 179 TQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD 258 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCC
Confidence 12221 12456777766699999876 4 2899999999999999975444321 1 11
Q ss_pred CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
..+ +.||||.++ +|+|+||++++ +++++.+.......+++.++++|.++.+.++.+.++ +++++.++
T Consensus 259 ~pD--i~t~gK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~---------~~~~~~~~ 325 (421)
T PRK09792 259 KPD--LMTMAKSLA-GGMPLSGVVGN-ANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKE---------SLCERANQ 325 (421)
T ss_pred CCc--EEEeehhhc-CCCceEEEEEc-HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhh---------hHHHHHHH
Confidence 223 689999999 99999999996 889888766556678999999999988888876543 45555553
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCC-cccccccccCCCCCceEEeecCcc---------HHHHHHHHHhCCEEeecCCC
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPS-QFCTFLGRAFEPQPAFAWLKCEQE---------IEDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g-~~~~~~~~~~~~~~~f~~~~~~~~---------~~~~~~~l~~~gI~v~pg~~ 425 (456)
.-+..++.+.+..++++.+ ..+.| |+ ++|+.+++. ...+...+.++||.+.+.
T Consensus 326 ~g~~l~~~l~~l~~~~p~v--~~vrG~Gl-------------~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~-- 388 (421)
T PRK09792 326 LGQRLKNTLIDAKESVPAI--AAVRGLGS-------------MIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTC-- 388 (421)
T ss_pred HHHHHHHHHHHHHHhCCCc--ceecccce-------------EEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeec--
Confidence 3333333333333344532 23344 44 788888532 345677788999999642
Q ss_pred CCCCCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 426 FGFSPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 426 fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
+...+.||+..+. +++++++++++|.++++
T Consensus 389 -g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 389 -GAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred -CCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 2236889999653 89999999999998863
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=181.67 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=121.9
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh---
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--- 205 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--- 205 (456)
++|+.+. ..+|++.+|++++. +..++++++++++..++.+++++|| +|+++.|.|++..
T Consensus 52 sr~~~p~------~~~le~~lA~l~g~--------~~~v~~~sG~~Ai~~al~~l~~~Gd----~Vl~~~~~y~~t~~~~ 113 (418)
T TIGR01326 52 SRLMNPT------TDVLEQRIAALEGG--------VAALAVASGQAAITYAILNLAQAGD----NIVSSSYLYGGTYNLF 113 (418)
T ss_pred ECCCChh------HHHHHHHHHHHhCC--------CeEEEEccHHHHHHHHHHHHhCCCC----EEEEECCCcHHHHHHH
Confidence 3455554 47999999999862 3678888999999999999999999 9999999987643
Q ss_pred -hhhhhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCC
Q 012785 206 -SITDCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPA 275 (456)
Q Consensus 206 -~~~~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~ 275 (456)
..++..|++++.++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+ ....+...
T Consensus 114 ~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~-~~~~~l~~ 192 (418)
T TIGR01326 114 KHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATP-YLCRPIDH 192 (418)
T ss_pred HHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchh-hcCCchhc
Confidence 345668988887765 4455543 36789999999999999877 4889999999999999743 11112234
Q ss_pred CCcEEEecCccccCCCCceEEEEEEe
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
+.+++++|+||.++.+|+|+||++++
T Consensus 193 g~Divv~S~sK~l~g~G~~lGg~v~~ 218 (418)
T TIGR01326 193 GADIVVHSATKYIGGHGTAIGGVIVD 218 (418)
T ss_pred CCeEEEECccccccCCccceEEEEEe
Confidence 57999999999999899999999996
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=186.47 Aligned_cols=272 Identities=15% Similarity=0.090 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC-----CCC-CCcEEEEeCCCCCChhhhhhhcC----
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ-----DAS-EPISVVSAAPYYSSYPSITDCVK---- 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~-----gd~-~~~~Vlv~~P~y~~~~~~~~~~g---- 212 (456)
.+|.+.++++.+ .+.++++++++++++.+++..... |.. ....|+...-+|++....+....
T Consensus 120 ~~la~~L~~~~~--------~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~ 191 (474)
T PLN02624 120 PEFAEYLTSMFG--------YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNE 191 (474)
T ss_pred HHHHHHHHhhcC--------CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcc
Confidence 567777777642 258999999999999999865431 100 01168888888988754443321
Q ss_pred -----------CeEeeeccCcccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCC
Q 012785 213 -----------SRLYKWAGDAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWP 266 (456)
Q Consensus 213 -----------~~~~~~~~d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~ 266 (456)
...+++. |.+.++. .++++|+++.++||+|.+++ ++|++||+++|.||+|.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~-d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~ 270 (474)
T PLN02624 192 ATRGFGPLLPGHLKVDFG-DLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGL 270 (474)
T ss_pred ccccCCCCCCCceEeCCC-CHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 1222222 4444432 35678999999999999877 2799999999999999865
Q ss_pred CCCCC--CC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 267 QYTSI--TY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 267 ~~~~~--~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
++++- .. ..+...-+.+|||.+|.+++++|+++++ +++++.+.......+++.+++.+.++.+.|+.+.+.
T Consensus 271 GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~-~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~----- 344 (474)
T PLN02624 271 ARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLAD-KDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDE----- 344 (474)
T ss_pred CcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeec-HHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhc-----
Confidence 44331 11 1111112444799999666999999996 888887765555567889999999999999865432
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHh----cC-CccccCCCCcccccccccCCCCCce-EEeecC----ccHHHHHHHH
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQK----SG-LFSVPELPSQFCTFLGRAFEPQPAF-AWLKCE----QEIEDCESFL 413 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~-~~~~~~~~g~~~~~~~~~~~~~~~f-~~~~~~----~~~~~~~~~l 413 (456)
+ +.+...++.+.+.+.|++ ++ .+...++.|.+ + ++++.+ .....+.+.|
T Consensus 345 ----~----l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~-------------~~i~l~~~~~~~~~a~~~~~~L 403 (474)
T PLN02624 345 ----K----LAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLL-------------NAVVLNSPKLGPVSAYDVCLKL 403 (474)
T ss_pred ----h----HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEE-------------EEEEecCCCcChHHHHHHHHHH
Confidence 1 222333333334333333 22 12223344544 2 233322 1234567778
Q ss_pred HhCCEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 414 KGNKILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 414 ~~~gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
.++||.+.|+ +.+++||+. ..+++++++++++|++++
T Consensus 404 ~e~GV~v~p~-----~~~~lR~~p~l~~t~e~id~~l~~L~~~l 442 (474)
T PLN02624 404 KERGLLAKPT-----HDTIIRLAPPLSISEDELQECSKALSDVL 442 (474)
T ss_pred HhCCeEEecC-----CCCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 8999999985 367899985 359999999999999876
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=183.13 Aligned_cols=257 Identities=14% Similarity=0.072 Sum_probs=176.2
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCe---E-------------eeecc------
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSR---L-------------YKWAG------ 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~---~-------------~~~~~------ 220 (456)
+.+++++++++|++.+++.... .|.. +|+...-+|++....+...... . ++++-
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 178 (421)
T PRK06777 102 AKTAFFTTGAEAVENAVKIARAYTGRP---GVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVS 178 (421)
T ss_pred ceEEEeCCcHHHHHHHHHHHHHhhCCC---eEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcC
Confidence 5899999999999999987643 2322 7999999999987655433111 0 01110
Q ss_pred ---Cccccc--------cCCCeEEEEcCCCCCCccc-ch--------HHhhhcCcEEEeeecCCCCCCCCCC---CCC--
Q 012785 221 ---DAKRFN--------KDGPYIELVTSPNNPDGSV-RQ--------SVVNRSGGILVHDLAYYWPQYTSIT---YPA-- 275 (456)
Q Consensus 221 ---d~~~l~--------~~~~~~i~v~~P~NPtG~~-~~--------~l~~~~~~~iI~De~y~~~~~~~~~---~~~-- 275 (456)
+.+.++ .++..++++...+++.|.. .+ ++|+++|+++|.||+|.+..+.+.. ...
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~ 258 (421)
T PRK06777 179 VEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV 258 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCC
Confidence 011121 1245677776568888864 33 3899999999999999975443321 111
Q ss_pred CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
..+ +.+|||.++ +|+|+||++++ +++++.+.......+++.++++|.++.+.|+.+.+. .+.+
T Consensus 259 ~pD--iv~~sK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~-------------~l~~ 321 (421)
T PRK06777 259 KPD--LITMAKSLG-GGMPISAVVGR-AEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEE-------------KLCQ 321 (421)
T ss_pred CCC--EEeeehhhc-CCCceEEEEEc-HHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc-------------cHHH
Confidence 123 347999999 99999999997 899888876656678999999999999999865332 3455
Q ss_pred HHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceE-EeecCc----c---HHHHHHHHHhCCEEeecC
Q 012785 356 QMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFA-WLKCEQ----E---IEDCESFLKGNKILTRSG 423 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~-~~~~~~----~---~~~~~~~l~~~gI~v~pg 423 (456)
+++++.+++.+.|+++ +.+...++.|.+ |. .+..+. + ...+...+.++||.+.|+
T Consensus 322 ~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~-------------~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~ 388 (421)
T PRK06777 322 RALILGAHLVEVLEKAKASCPAIVDIRARGSM-------------VAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSC 388 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEecCceEE-------------EEEEEecCccCCccHHHHHHHHHHHHhCCeEEeec
Confidence 6666666666666553 445556677776 32 232221 1 233455577899999998
Q ss_pred CCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 424 KHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 424 ~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
..|+ +++||... .+++++++++++|.+++.
T Consensus 389 ~~~g---~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 389 GVHG---NVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CCCC---CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 7664 68999974 599999999999998763
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=178.73 Aligned_cols=273 Identities=16% Similarity=0.120 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc------CCCCCCCcEEEEeCCCCCChhhhhhhcCCeE
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS------SQDASEPISVVSAAPYYSSYPSITDCVKSRL 215 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~------~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~ 215 (456)
..++++.++++++. ++.++++++|+++++..++.++. .+|| +|++++|+|..+...++..|+++
T Consensus 61 ~~~~~~~la~~~g~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~----~vl~~~~~h~~~~~~~~~~G~~~ 130 (373)
T TIGR03812 61 EEEVVGSLGNLLHL------PDAYGYIVSGGTEANIQAVRAAKNLAREEKRTP----NIIVPESAHFSFEKAAEMLGLEL 130 (373)
T ss_pred HHHHHHHHHHHhCC------CCCCeEEeccHHHHHHHHHHHHHHHHhccCCCc----EEEECCcchHHHHHHHHHcCCeE
Confidence 36777778877764 44678889999999988877664 3567 99999999999999999999998
Q ss_pred eeecc------Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC---------CCCC
Q 012785 216 YKWAG------DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY---------TSIT 272 (456)
Q Consensus 216 ~~~~~------d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~---------~~~~ 272 (456)
+.++. |.+.++. .++..+++.+|+||||.+.+ ++|+++++++|+|++|.+... ..+.
T Consensus 131 ~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d 210 (373)
T TIGR03812 131 RYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD 210 (373)
T ss_pred EEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc
Confidence 87764 3334432 23444444458999999876 378899999999999974210 0111
Q ss_pred -CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC--------cCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 273 -YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI--------GVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 273 -~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~--------~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
....-..+..|..| +++++.|.|+++..++++++.+......... ..+.....++...|+.+.
T Consensus 211 ~~~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~------- 282 (373)
T TIGR03812 211 FSLPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLG------- 282 (373)
T ss_pred ccCCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhC-------
Confidence 01122445667789 6678889997775457777766422111111 122344555556565321
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecC
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg 423 (456)
++.+++..+++.++++.+.+.|++++...+.. +..+++.+++++ .+.+.+.|.++||.++++
T Consensus 283 ---~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------~~~~~v~~~~~~-~~~v~~~L~~~gi~v~~~ 344 (373)
T TIGR03812 283 ---REGYRKIVAECMENTRYLVEELKKIGFEPVIE--------------PVLNIVAFEVDD-PEEVRKKLRDRGWYVSVT 344 (373)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcC--------------CCceEEEEEeCC-HHHHHHHHHHCCceeccC
Confidence 34567788899999999999999876322222 223466677653 456888888999999874
Q ss_pred CCCCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 424 KHFGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 424 ~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
. .++++|+++.. ++++++.+++.|+++
T Consensus 345 ~----~~~~iRis~~~~~t~edid~l~~~L~~~ 373 (373)
T TIGR03812 345 R----CPKALRIVVMPHVTREHIEEFLEDLKEI 373 (373)
T ss_pred C----CCCEEEEEEECCCCHHHHHHHHHHHhhC
Confidence 2 36799999873 899999999999864
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=182.63 Aligned_cols=268 Identities=12% Similarity=0.093 Sum_probs=189.5
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcC------------CCCCCCcEEEE
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSS------------QDASEPISVVS 196 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~------------~gd~~~~~Vlv 196 (456)
.|....+ ..++++++++++.. .|.+. ++.++++|+|+++++..++.++.. +++ ...|++
T Consensus 29 ~y~~~~~-----~~~le~~~~~~~~~~~g~~~-~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~--~~~v~~ 100 (345)
T cd06450 29 TWDESPA-----ATEMEAEVVNWLAKLFGLPS-EDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGID--KLVIVC 100 (345)
T ss_pred ccccCch-----hHHHHHHHHHHHHHHhCCCC-CCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccC--CeEEEE
Confidence 3666666 48999999999854 46552 245799999999999999988753 221 117888
Q ss_pred eCCCCCChhhhhhhcCCeEeeeccCc------ccccc---C------CCeEEEEcCCCCCCcccch-----HHhhhcCcE
Q 012785 197 AAPYYSSYPSITDCVKSRLYKWAGDA------KRFNK---D------GPYIELVTSPNNPDGSVRQ-----SVVNRSGGI 256 (456)
Q Consensus 197 ~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~~---~------~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~ 256 (456)
++++|..+...++..|.+++.++.|. +.++. . +++++++++|+||||.+.+ ++|+++|++
T Consensus 101 ~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~ 180 (345)
T cd06450 101 SDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLW 180 (345)
T ss_pred cCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCe
Confidence 89999999888888899888776543 33322 2 5678888999999999866 388999999
Q ss_pred EEeeecCCCCCCC-----CCCCC-CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHH
Q 012785 257 LVHDLAYYWPQYT-----SITYP-ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAK 330 (456)
Q Consensus 257 iI~De~y~~~~~~-----~~~~~-~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~ 330 (456)
+++|++|.+.... ..... .+-+.+..|++|.++ ++.++|+++++ .+.+.++..
T Consensus 181 l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~~--------------------~~~~~~~l~ 239 (345)
T cd06450 181 LHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGL-VPLGCSAVLVR--------------------ALKLWATLR 239 (345)
T ss_pred EEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhC-CCcchHHHHHH--------------------HHHHHHHHH
Confidence 9999999853221 10011 233567789999776 66788887653 444555555
Q ss_pred HHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCCcccccccccCCCCCceEEeecCc-----
Q 012785 331 VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPSQFCTFLGRAFEPQPAFAWLKCEQ----- 404 (456)
Q Consensus 331 ~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~~~~~~~f~~~~~~~----- 404 (456)
.+. ...+++.+++..+.++.+.+.|++++.+.+.. +.++ ++.+.++.
T Consensus 240 ~l~-------------~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--------------iv~f~~~~~~~~~ 292 (345)
T cd06450 240 RFG-------------RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLS--------------LVCFRLKPSVKLD 292 (345)
T ss_pred HHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcee--------------EEEEEECCcchhh
Confidence 554 34566778888889999999998876554432 2222 34444443
Q ss_pred -cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhh
Q 012785 405 -EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKI 454 (456)
Q Consensus 405 -~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~ 454 (456)
+...+.+.|.++|+.+.++..|. .++++|+++.. ++++++++++.|++.
T Consensus 293 ~~~~~i~~~L~~~g~~~~~~~~~~-~~~~lRis~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 293 ELNYDLSDRLNERGGWHVPATTLG-GPNVLRFVVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred HHHHHHHHHHHhcCCEEEEeeEEC-CeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence 34567888888877666665554 46799999873 779999999999763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-19 Score=178.15 Aligned_cols=272 Identities=13% Similarity=0.042 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.+|++++. +++++++|+++++.+++.++..+|| +|+++.++|......++..|++++.++.
T Consensus 65 ~~~l~~~lA~~~g~--------~~~~~~~g~t~a~~~al~~l~~~gd----~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 132 (387)
T PRK09331 65 IADFHEDLAEFLGM--------DEARVTHGAREGKFAVMHSLCKKGD----YVVLDGLAHYTSYVAAERAGLNVREVPKT 132 (387)
T ss_pred HHHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHhcCCCC----EEEECCCchHHHHHHHHHcCCEEEEEeCc
Confidence 48999999999964 3678899999999999999999999 9999999988877778889999887765
Q ss_pred -C------cccccc----------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCC
Q 012785 221 -D------AKRFNK----------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADH 277 (456)
Q Consensus 221 -d------~~~l~~----------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~ 277 (456)
| .+.++. .++++|++++|+||||...+ ++|+++|+++|+|++|..... ++. ...+.
T Consensus 133 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~-~~~~~~~g~ 211 (387)
T PRK09331 133 GYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRM-PVDGKKLGA 211 (387)
T ss_pred cCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCc-CCCHHHcCC
Confidence 2 333321 15789999999999999876 489999999999999984321 221 23356
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc------cCc--CChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN------TIG--VSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~------~~~--~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
+++++|++|.++ .+.|+||++++ +++++.+.+..... .++ .+.....++.+.++.+ .+.
T Consensus 212 D~~~~s~~K~l~-~~~~~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~-----------~~~ 278 (387)
T PRK09331 212 DFIVGSGHKSMA-ASAPSGVLATT-EEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHV-----------VER 278 (387)
T ss_pred CEEEeeCccccc-CCCCEEEEEEC-HHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHH-----------HHH
Confidence 899999999998 56699999996 88887765542100 011 1111222223333311 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEE
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKIL 419 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~ 419 (456)
++ ..++..++.+.+++.|++++++.+.... ++.+++..++.+. ....+.+.|+++||.
T Consensus 279 ~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~-----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~ 346 (387)
T PRK09331 279 VK-RWDEEVKKARWFVDELEKIEGFKQLGEK-----------PRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIH 346 (387)
T ss_pred HH-HHHHHHHHHHHHHHHHhcCCCEEEeccC-----------cCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCce
Confidence 33 2344456677888999988555544211 1122344344331 224577888899998
Q ss_pred eecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 420 TRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+.+. .....+|+.... ++++++.+++.|++++
T Consensus 347 ~~~~----~~~~i~ri~~~g~t~~di~~l~~aL~~i~ 379 (387)
T PRK09331 347 GIKP----GATKEFKLSTYGLTWEQVEYVADAFKEIA 379 (387)
T ss_pred EEcc----CCceEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 4331 125567777645 8999999999999875
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=174.97 Aligned_cols=283 Identities=13% Similarity=0.131 Sum_probs=183.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+|++.+|++.+. +..+++++|. .++.+++ .++++|| +|++++|+|+.... .+...|+++..
T Consensus 52 ~~~Le~~lA~l~g~-------~~~~~~~sG~-aai~~~~-~~l~~Gd----~Viv~~~~y~~~~~~~~~~~~~~G~~v~~ 118 (377)
T PRK07671 52 RAALEELIAVLEGG-------HAGFAFGSGM-AAITAVM-MLFSSGD----HVILTDDVYGGTYRVMTKVLNRFGIEHTF 118 (377)
T ss_pred HHHHHHHHHHHhCC-------CceEEeCCHH-HHHHHHH-HHhCCCC----EEEECCCccchHHHHHHHHHhcCCeEEEE
Confidence 47899999999863 3467777775 6777765 5778999 99999999985433 33446888887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.+. .+...+.+++++|+||.+
T Consensus 119 v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~-~p~~~g~Divv~S~sK~l 197 (377)
T PRK07671 119 VDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQ-SPISLGADIVLHSATKYL 197 (377)
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccC-ChhhhCCeEEEecCcccc
Confidence 765 5555543 36799999999999999876 4889999999999999753221 112234579999999999
Q ss_pred CCC-CceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHA-GTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~-G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+-+ +.-.|++++.+++++++++..+.......++...+.+..-+ +.+....++..++...+.+.
T Consensus 198 ~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l---------------~tl~~R~~~~~~na~~la~~ 262 (377)
T PRK07671 198 GGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGL---------------KTLGIRMEEHETNSRAIAEF 262 (377)
T ss_pred cCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCc---------------ChHHHHHHHHHHHHHHHHHH
Confidence 744 34567788766889999988876555556665555444333 34556777788899999999
Q ss_pred HHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCEEe---ecCCC---------------
Q 012785 368 VQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILT---RSGKH--------------- 425 (456)
Q Consensus 368 L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v---~pg~~--------------- 425 (456)
|++++.+.....++.- .....+.....+..+-+++. +.+.+.+.+..-.+.. .-|..
T Consensus 263 L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~ 341 (377)
T PRK07671 263 LNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG-SEETANKVLERLQYFTLAESLGAVESLISIPSQMTHASI 341 (377)
T ss_pred HHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC-CHHHHHHHHHhCCcceEccCCCCCCeEeECCCccccccC
Confidence 9988654332222110 01111111222334555663 4444444444433321 11110
Q ss_pred -------CCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 426 -------FGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 426 -------fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.|..++.||||++. |+.+.+++-|.+.|+
T Consensus 342 ~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~ 377 (377)
T PRK07671 342 PADRRKELGITDGLIRISVGI--EDGEDLIEDLAQALA 377 (377)
T ss_pred CHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHhC
Confidence 11235789999854 345667777777653
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=176.24 Aligned_cols=283 Identities=13% Similarity=0.043 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh--hhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY--PSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~ 219 (456)
.++.+.+++.+. .+|.. .++.+++++|++++++.++..+.++|| +|++.+|.|+.. ...++..|++++.++
T Consensus 41 ~~~~~~~~~~l~~~~g~~--~~~~vi~~~~gt~a~~~a~~~~~~~Gd----~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 41 PALTKELLEDVKYIFKTK--SGTPFIFPTTGTGAWESALTNTLSPGD----KVVSFRIGQFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred HHHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHHHHHHHhcCCCCC----EEEEeCCCchhHHHHHHHHHcCCceEEEE
Confidence 566666666663 33433 234788999999999999999999999 999999988765 466778899888766
Q ss_pred cC------ccccc----c---CCCeEEEEcCCCCCCcccch-----HH--hhhcCcEEEeeecCCCCCCCCCC-CCCCCc
Q 012785 220 GD------AKRFN----K---DGPYIELVTSPNNPDGSVRQ-----SV--VNRSGGILVHDLAYYWPQYTSIT-YPADHD 278 (456)
Q Consensus 220 ~d------~~~l~----~---~~~~~i~v~~P~NPtG~~~~-----~l--~~~~~~~iI~De~y~~~~~~~~~-~~~~~~ 278 (456)
.+ .+.++ . .+++++++++++||||.+++ ++ |+++|+++|+|+++.-. ..++. ...+.+
T Consensus 115 ~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g-~~~id~~~~~~D 193 (401)
T PLN02409 115 SPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIG-ALDFRMDEWGVD 193 (401)
T ss_pred CCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccC-CccccccccCcc
Confidence 54 23332 1 25789999999999999987 37 88899999999998732 22332 233557
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh---------------h---ccCcCChHHHHHHHHHHHhhhCCCC
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---------------L---NTIGVSKDSQLRAAKVLKVVSDSCK 340 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~---------------~---~~~~~s~~~q~~a~~~L~~~~~~~~ 340 (456)
+++.|.+|.++.|. ++||++++ +++.+++..... . ...+++...+.++.++++.+.
T Consensus 194 ~~~~s~~K~l~~P~-G~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~---- 267 (401)
T PLN02409 194 VALTGSQKALSLPT-GLGIVCAS-PKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIF---- 267 (401)
T ss_pred EEEEcCccccCcCC-CcceeEEC-HHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH----
Confidence 88899999986443 69999997 888887754210 0 023455666777777777432
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHH-HHHHhCC
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCE-SFLKGNK 417 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~-~~l~~~g 417 (456)
+.-++++++++++.++.+.+.|++.+ +++..+.... ..+...++.++. +.+.+. .++.++|
T Consensus 268 ------~~G~e~i~~~~~~l~~~l~~~L~~~g-~~~~~~~~~~---------~s~~v~~~~~p~~~~~~~l~~~l~~~~~ 331 (401)
T PLN02409 268 ------EEGLENVIARHARLGEATRLAVEAWG-LKLCTKKPEW---------RSDTVTAVVVPEGIDSAEIVKNAWKKYN 331 (401)
T ss_pred ------HhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCChhh---------cccceEEEeCCCCCCHHHHHHHHHHhCC
Confidence 23467888899999999999998774 4444332111 111235666653 444554 4557889
Q ss_pred EEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|.+.+|..- .....|||+.-. +.+++..+++.|.++|
T Consensus 332 i~i~~G~~~-~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l 370 (401)
T PLN02409 332 LSLGLGLNK-VAGKVFRIGHLGNVNELQLLGALAGVEMVL 370 (401)
T ss_pred EEEEcCCCc-ccCCEEEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 999998642 246899999654 8899999999998865
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=173.70 Aligned_cols=281 Identities=15% Similarity=0.179 Sum_probs=210.0
Q ss_pred CHHHHHHHHHHHHHhcCccCC-CceEEEccCHHHHHHHHHHHh---cCCCCCCCcEEEEeCCCCCC----hhhhhhhcCC
Q 012785 142 EPEFAKEVVRLHKVVGNAITE-NHHIVVGTGSTQLFQAALYAL---SSQDASEPISVVSAAPYYSS----YPSITDCVKS 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~-~~~I~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~ 213 (456)
+++.|+++|++++. + .++|++|.|+|++|+++..++ ..+|| +|++.+-.|+. +....+..|+
T Consensus 68 ~e~aRe~va~~~~a------~~~~eIvft~~tT~aln~va~~l~~~~~~gd----eIv~s~~EH~sn~~pw~~~~~~~Ga 137 (405)
T COG0520 68 YEAAREAVARFLNA------DSSDEIVFTRGTTEALNLVARGLGRSLKPGD----EIVVSDLEHHSNIVPWQELAKRTGA 137 (405)
T ss_pred HHHHHHHHHHHhCC------CCCCeEEEeCChhHHHHHHHHHhhhhhcCCC----EEEEccCcchhhHHHHHHHHHhcCc
Confidence 47888999999875 4 478999999999999999999 58899 99999988775 3445555688
Q ss_pred eEeeeccCccc------cc---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcE
Q 012785 214 RLYKWAGDAKR------FN---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDL 279 (456)
Q Consensus 214 ~~~~~~~d~~~------l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i 279 (456)
++..+++|.++ ++ ..+++++.++.-+|.||.+.+ ++|+++|+++++|-+++-++..--....+.++
T Consensus 138 ~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df 217 (405)
T COG0520 138 KVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDF 217 (405)
T ss_pred EEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCE
Confidence 88888876332 22 247899999999999999988 48999999999999988665444335668899
Q ss_pred EEecCcc-ccCCCCceEEEEEEeCHHHHHHHHHHHh---------------------hccCcCChHHHH-HHHHHHHhhh
Q 012785 280 MLFTVSK-STGHAGTRIGWALVKDMEVAKKMTKYIE---------------------LNTIGVSKDSQL-RAAKVLKVVS 336 (456)
Q Consensus 280 ~i~S~SK-~~g~~G~RiG~l~~~~~~~~~~l~~~~~---------------------~~~~~~s~~~q~-~a~~~L~~~~ 336 (456)
+.+|-.| .+|..| +|.+.++ +++.+.+..... ....|++.+.+. ++.++++.+.
T Consensus 218 ~afsgHKwl~gP~G--iGvLy~r-~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~ 294 (405)
T COG0520 218 LAFSGHKWLLGPTG--IGVLYVR-KELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLL 294 (405)
T ss_pred EEEcccccccCCCc--eEEEEEc-hHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHH
Confidence 9999999 777447 8999997 888887732110 012334444443 3345555432
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHh
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKG 415 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~ 415 (456)
. --++.+.++.++..+++.+.|++++.+.+..++.. .....+-+.++. +..++...|.+
T Consensus 295 ~----------ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~----------~r~~~vsF~v~~~~~~dv~~~L~~ 354 (405)
T COG0520 295 E----------IGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDA----------DRGGIVSFNVKGIHPHDVATLLDE 354 (405)
T ss_pred H----------HhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcc----------cCceEEEEEeCCCCHHHHHHHHHh
Confidence 2 23567888888888999999999987777765420 011134455544 68899999999
Q ss_pred CCEEeecCCCCCC-------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 416 NKILTRSGKHFGF-------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 416 ~gI~v~pg~~fg~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+||.++.|.++.. -...+|+|+.. ++||++++++.|+++.
T Consensus 355 ~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~ 403 (405)
T COG0520 355 KGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKAL 403 (405)
T ss_pred CCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 9999999988742 24459999874 9999999999999875
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=172.60 Aligned_cols=203 Identities=11% Similarity=0.094 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~ 218 (456)
.+|+++||++.+ .+++++++|+++|+..++.+++++|| +|++++|.|.++...+ ...|+++..+
T Consensus 64 ~~Le~~iA~le~--------~~~~~~~~sG~~Ai~~~l~all~~GD----~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v 131 (394)
T PRK09028 64 FAFQAAIVELEG--------GAGTALYPSGAAAISNALLSFLKAGD----HLLMVDSCYEPTRDLCDKILKGFGIETTYY 131 (394)
T ss_pred HHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEECCCcHHHHHHHHHhhhhcceEEEEE
Confidence 699999999864 24789999999999999999999999 9999999998877543 4568877766
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+- ..|+ ..+-+++++|.+|.+
T Consensus 132 ~~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl--~~GaDivv~S~tK~l 209 (394)
T PRK09028 132 DPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPF--EMGVDISIQAATKYI 209 (394)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCcc--ccCceEEEEeCCeEe
Confidence 54 3344433 46899999999999999876 47889999999999998532 2222 445689999999999
Q ss_pred -CCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 -GHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 -g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|+.++..|+++. ++++.++++..+.......++.....+...|+ .+.-..++..++...+.+.
T Consensus 210 ~Gh~d~~~G~~~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~---------------TL~lR~~~~~~na~~la~~ 273 (394)
T PRK09028 210 VGHSDVMLGTATA-NEKHWDQLREHSYLMGQCTSPDDVYLAMRGLR---------------TLGVRLAQHEKNALKVANW 273 (394)
T ss_pred cCCCCEEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC---------------cHHHHHHHHHHHHHHHHHH
Confidence 677788898776 48888878776665677788887777666555 3555667778888899999
Q ss_pred HHhcCCcc
Q 012785 368 VQKSGLFS 375 (456)
Q Consensus 368 L~~~~~~~ 375 (456)
|++++.+.
T Consensus 274 L~~~p~v~ 281 (394)
T PRK09028 274 LATRPEVD 281 (394)
T ss_pred HhcCCCcc
Confidence 99987543
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=181.16 Aligned_cols=257 Identities=12% Similarity=0.091 Sum_probs=169.8
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-CC--------------eEeeecc-------
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-KS--------------RLYKWAG------- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g~--------------~~~~~~~------- 220 (456)
+.++++++++||++.+++.... .|.. +|+.-.-+|++....+... |. ..++++.
T Consensus 102 ~~v~f~~sGsEAve~AlklAr~~tgr~---~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (443)
T PRK08360 102 PKVSFGLSGSDANDGAIKFARAYTKRR---KILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFG 178 (443)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcCCC---eEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCcccccccc
Confidence 5899999999999999987643 2321 7888888898875433221 11 1111110
Q ss_pred ---------Ccc----ccc----cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC--C
Q 012785 221 ---------DAK----RFN----KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI--T 272 (456)
Q Consensus 221 ---------d~~----~l~----~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~--~ 272 (456)
+.+ .++ ..+++++++..-+||+|.+++ ++|+++|+++|+||+|.+..+.+- .
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a 258 (443)
T PRK08360 179 KEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFA 258 (443)
T ss_pred CchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchh
Confidence 011 111 135677777645799999877 279999999999999986543331 1
Q ss_pred ---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 273 ---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 273 ---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
.....++ .+|||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.+. +.
T Consensus 259 ~~~~~~~pDi--itlsK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~---------~l 325 (443)
T PRK08360 259 IEHFGVEPDI--ITLGKPLG-GGLPISATIGR-AEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK---------NL 325 (443)
T ss_pred hhhcCCCCCE--EEeccccc-CCceeEEEEEc-HHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHc---------CH
Confidence 1112233 37899999 99999999997 899988876555678899999999999999876543 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEE
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKIL 419 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~ 419 (456)
+++.++.-+..++.|.+...+.+.+...++.|.+ +-+.+.. ....+...+.++||.
T Consensus 326 ~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~--------------~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 391 (443)
T PRK08360 326 LKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLM--------------IGVDLVKDRETKERAYEEAAKVVWRAWELGLI 391 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceE--------------EEEEEecCCcccCccHHHHHHHHHHHHHCCeE
Confidence 4444444444444444433344434344445544 3333311 134567778899999
Q ss_pred eecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 420 TRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+.+. ..+.+|++ +..+++++++++++|.+.+
T Consensus 392 ~~~~-----~~~~lr~~P~l~~t~~~id~~~~~l~~~l 424 (443)
T PRK08360 392 VTFF-----SGNVLRIQPPLTIEKEVLDEGLDILEEAI 424 (443)
T ss_pred Eeec-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 8752 25789995 4459999999999998876
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=176.01 Aligned_cols=283 Identities=14% Similarity=0.131 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcCCCCC-----------CCcEEEEeCCCCCCh----hh
Q 012785 143 PEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSSQDAS-----------EPISVVSAAPYYSSY----PS 206 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~-----------~~~~Vlv~~P~y~~~----~~ 206 (456)
+++++++.+++.. +| .+++++|+|+++++.+++.+++++||. ...+|+++.|.|..| ..
T Consensus 44 ~~~~~~~~~~~a~~~g-----~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~ 118 (363)
T TIGR01437 44 KELVNKTGEYIANLLG-----VEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVET 118 (363)
T ss_pred HHHHHHHHHHHHHhhC-----CCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHH
Confidence 5666666666532 22 247899999999999999999988860 112788899888766 46
Q ss_pred hhhhcCCeEeeec----cCcccccc---CCCeEEE-EcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCC
Q 012785 207 ITDCVKSRLYKWA----GDAKRFNK---DGPYIEL-VTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITY 273 (456)
Q Consensus 207 ~~~~~g~~~~~~~----~d~~~l~~---~~~~~i~-v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~ 273 (456)
.....|++++.++ +|.+.++. .++++++ +++|+||+|.+.+ ++|+++|+++|+|++|...- ... .
T Consensus 119 ~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~-~ 196 (363)
T TIGR01437 119 MVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKY-Y 196 (363)
T ss_pred HHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHH-H
Confidence 6677898888655 45555543 3567655 6789999998866 48999999999999997321 110 1
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc--cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN--TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~--~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
..+-+++++|++|.+ +|.|.|+++.+ +++++.++...... .+........+..+.++.+.+.. .+
T Consensus 197 ~~g~D~~~~S~~K~l--~gp~~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~-------~~--- 263 (363)
T TIGR01437 197 RLGADLVIYSGAKAI--EGPTSGLVLGK-KKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTG-------KE--- 263 (363)
T ss_pred HcCCCEEEEeCCccc--CCCceEEEEEc-HHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccC-------cc---
Confidence 124579999999965 67789999985 77877765432210 01111112223333343222210 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec---CccHHHHHHHHHhCC--EEeecCCCC
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC---EQEIEDCESFLKGNK--ILTRSGKHF 426 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~---~~~~~~~~~~l~~~g--I~v~pg~~f 426 (456)
..+.+.++++.+.+.|++++++.+..+.+.... .++. .-+.++. .-+..++.+.|+++| |.+++ +
T Consensus 264 -~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~----~~~~--~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~---~ 333 (363)
T TIGR01437 264 -SGAEMVAKLTPFIEALNTLKGVSASIVQDEAGR----DIAR--AEIRFDESELGMTAADVVQALRQGEPAIYTRG---Y 333 (363)
T ss_pred -cHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCC----cCce--EEEEEeccCCCCCHHHHHHHHhcCCCCEEEee---e
Confidence 233344566778999998876665532211000 0000 0122332 225778889998777 77765 3
Q ss_pred CCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 427 GFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 g~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
....+.+|+++.. +++|++.++++|++++
T Consensus 334 ~~~~~~~~l~~~~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 334 KANEGIIEIDPRSVTGGQLDIIVERIREIV 363 (363)
T ss_pred eecCCeEEEEeecCCHHHHHHHHHHHHHhC
Confidence 3357889999866 8999999999999874
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=174.45 Aligned_cols=262 Identities=18% Similarity=0.170 Sum_probs=173.2
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh-----hhhcCCeEeeecc-------Ccccccc---
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI-----TDCVKSRLYKWAG-------DAKRFNK--- 227 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~-----~~~~g~~~~~~~~-------d~~~l~~--- 227 (456)
..+|++++| ++++..++.+++++|| +|+++.|+|+.+... +...|.+++.++. |.+.++.
T Consensus 88 ~~~i~~~sg-t~al~~~l~~l~~~gd----~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~ 162 (416)
T PRK00011 88 YANVQPHSG-SQANAAVYFALLKPGD----TILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLAL 162 (416)
T ss_pred ceeeecCCc-hHHHHHHHHHhcCCCC----EEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHH
Confidence 345766666 5799999999999999 999999999865321 2233556655444 3444432
Q ss_pred -CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCCC-CC---CCCCCCCCCcEEEecCccccCCCCceEEEEE
Q 012785 228 -DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYWP-QY---TSITYPADHDLMLFTVSKSTGHAGTRIGWAL 299 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~~-~~---~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~ 299 (456)
.+++++++++++||+..-+. ++|+++|+++|+|++|... .. .+.... ..+++++|+||.+ +|.|.||++
T Consensus 163 ~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l--~g~~gg~i~ 239 (416)
T PRK00011 163 EHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTL--RGPRGGLIL 239 (416)
T ss_pred hcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCC--CCCCceEEE
Confidence 36788888777777544444 3789999999999998531 11 111111 4468899999965 789999999
Q ss_pred EeCHHHHHHHHHHHhhccCcCChHHHHHH-HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 012785 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRA-AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378 (456)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~a-~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 378 (456)
++++++.++++........+.+...+.++ ...+... .++.++..+++++++++.+.+.|++.+ +.+..
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 308 (416)
T PRK00011 240 TNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA----------LEPEFKEYAQQVVKNAKALAEALAERG-FRVVS 308 (416)
T ss_pred eCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHhCC-Ceeee
Confidence 97678998887765433333332222222 2222211 123467788889999999999998864 44321
Q ss_pred CCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCC-CCC----CCCCeEEEEe------cCChhHH
Q 012785 379 LPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGK-HFG----FSPKYVRISM------LDRDENY 444 (456)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~-~fg----~~~~~iRis~------~~~~e~i 444 (456)
.+ +.++++|+.+++ +.+.+.+.|+++||.+..+. .|. ..+..+|++. ..+++++
T Consensus 309 -~~-----------~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di 376 (416)
T PRK00011 309 -GG-----------TDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEM 376 (416)
T ss_pred -cC-----------CCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHH
Confidence 11 122478998853 45678888999999998432 121 1245799964 1268999
Q ss_pred HHHHHHHHhhh
Q 012785 445 NLFVQRLSKIL 455 (456)
Q Consensus 445 ~~~l~~L~~~l 455 (456)
+.+++.|++++
T Consensus 377 ~~l~~~l~~~~ 387 (416)
T PRK00011 377 KEIAELIADVL 387 (416)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=174.05 Aligned_cols=267 Identities=13% Similarity=0.102 Sum_probs=178.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP----SITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~ 217 (456)
..+|++++|++.+. +..++++ +++.++.+++.+++++|| +|+++.|.|.... ..+...|+++..
T Consensus 65 ~~~le~~lA~l~g~-------~~av~~~-sG~~Ai~~al~al~~~Gd----~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 132 (389)
T PRK05968 65 VRAFEEMLAKLEGA-------EDARGFA-SGMAAISSTVLSFVEPGD----RIVAVRHVYPDAFRLFETILKRMGVEVDY 132 (389)
T ss_pred HHHHHHHHHHHhCC-------CcEEEEC-CHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHHcCceEEE
Confidence 37999999999864 3345554 556899999999999999 9999999998743 455667988877
Q ss_pred ecc-Ccccccc--CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK--DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~--~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|.||++.+.+ ++|+++|+++|+|++|..+. ..++ ..+-++++.|+||.+
T Consensus 133 vd~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~--~~g~Divv~S~tK~l 210 (389)
T PRK05968 133 VDGRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI--TLGVDLVIHSASKYL 210 (389)
T ss_pred eCCCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch--hcCCcEEEeeccccc
Confidence 665 4555543 35789999999999988755 37889999999999997542 2233 234579999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHHHHHHHHh-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAKKMTKYIE-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~~l~~~~~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
+.+| ++.|+++.+ ++++++++.... ......+++.+..+...|+ .+....++-.++.+.+.+
T Consensus 211 ~g~~~~~gG~i~~~-~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~---------------tl~~r~~~~~~~a~~la~ 274 (389)
T PRK05968 211 GGHSDTVAGVVAGS-KEHIARINAEAYPYLGAKLSPFEAWLLLRGLR---------------TLPLRMKAHEASALEIAR 274 (389)
T ss_pred cCCCCeEEEEEEEC-HHHHHHHHHHHHHhCCCCCChHHHHHHHcccC---------------cHHHHHHHHHHHHHHHHH
Confidence 7655 588998875 888888876543 2344567666666555444 223344445556778889
Q ss_pred HHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC-----------------
Q 012785 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG----------------- 427 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg----------------- 427 (456)
.|++++.++....+|.-.+. .+.....+..+-+++++ +...+.+.|+..++.+.-|..+.
T Consensus 275 ~L~~~p~v~~v~~p~l~~~~-~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~ 353 (389)
T PRK05968 275 RLKAHPVVERVCHPALANHP-PAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNS 353 (389)
T ss_pred HHHhCCCccEEECCCCCCCh-HHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHH
Confidence 99988766544322210000 00001112245555642 34567777777777666554432
Q ss_pred -----CCCCeEEEEecC
Q 012785 428 -----FSPKYVRISMLD 439 (456)
Q Consensus 428 -----~~~~~iRis~~~ 439 (456)
..++.||+|++.
T Consensus 354 ~~~~gi~~~liR~SvGl 370 (389)
T PRK05968 354 AARFGVSPRSVRLHVGL 370 (389)
T ss_pred HHhcCCCCCeEEEEecc
Confidence 135789999965
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=175.66 Aligned_cols=273 Identities=15% Similarity=0.114 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~ 218 (456)
.++++.++++++. ++.++++++|+++++..++.++.. +++ +|++.+++|..+...++..|.++..+
T Consensus 62 ~~~~~~la~~~g~------~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~----~vl~~~~~h~s~~~~~~~~g~~~~~v 131 (371)
T PRK13520 62 EEAVEMLGELLHL------PDAYGYITSGGTEANIQAVRAARNLAKAEKP----NIVVPESAHFSFDKAADMLGVELRRA 131 (371)
T ss_pred HHHHHHHHHHhCC------CCCCeEEecCcHHHHHHHHHHHHhhccCCCc----eEEecCcchHHHHHHHHHcCceEEEe
Confidence 4566666666643 345788999999999999887754 356 89999999999998888899988876
Q ss_pred cc------Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC--C--C--CCCC-CCCC
Q 012785 219 AG------DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ--Y--T--SITY-PADH 277 (456)
Q Consensus 219 ~~------d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~--~--~--~~~~-~~~~ 277 (456)
+. |.+.++. ++++.++++.++||||.+.+ ++|+++|+++++|++|.+.. + . .+.. ..+-
T Consensus 132 ~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~v 211 (371)
T PRK13520 132 PLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV 211 (371)
T ss_pred cCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCC
Confidence 64 3444443 24666777788999999987 38999999999999997421 1 1 1111 1223
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc--------CcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT--------IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~--------~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
+.+..|..| ++.+|.++|++++.++++++.+........ ...+.....++...|+.+. ++.
T Consensus 212 d~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~----------~~g 280 (371)
T PRK13520 212 DSITIDPHK-MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG----------REG 280 (371)
T ss_pred ceEEECCcc-ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhc----------HhH
Confidence 455567778 566889999988765777776642211100 0112334555555565321 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFS-VPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
+++.+++..++++.+.+.|++.+ +. +..+ ..+++.++++ +.+.+.+.|.++||.+.++.
T Consensus 281 ~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~--------------~~~~v~~~~~-~~~~v~~~L~~~gi~v~~~~---- 340 (371)
T PRK13520 281 YRKVVERCMENTRWLAEELKERG-FEPVIEP--------------VLNIVAFDDP-NPDEVREKLRERGWRVSVTR---- 340 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CEEecCC--------------CceEEEEecC-CHHHHHHHHHHCCceeccCC----
Confidence 56788888899999999998863 44 2222 2235666766 56678888888999998743
Q ss_pred CCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 429 SPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 429 ~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
.++++|+|+. .++++++.+++.|+++++
T Consensus 341 ~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 341 CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 2578999976 389999999999998763
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=173.08 Aligned_cols=281 Identities=12% Similarity=0.091 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~ 218 (456)
.+|++.++++++. ++++++++++.++.+++. ++++|| +|++++|.|..+... +...|+++..+
T Consensus 50 ~~le~~la~l~g~--------~~~l~~~sG~~al~~~l~-ll~~Gd----~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v 116 (378)
T TIGR01329 50 TALESLLAKLDKA--------DRAFAFSSGMAALDVITR-LLNNGD----EIIAGDDLYGGTDRLLTQVVPRSGVVVVHV 116 (378)
T ss_pred HHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHH-HhCCCC----EEEEcCCCchHHHHHHHHHHHHcCcEEEEe
Confidence 5777777777652 355555666679998876 779999 999999999887653 45579998877
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+. ..++ ..+-+++++|++|.+
T Consensus 117 d~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l--~~g~Di~v~S~tK~l 194 (378)
T TIGR01329 117 DTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL--ELGADIVYHSATKFL 194 (378)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCcEEEEecceec
Confidence 75 4555543 46899999999999999877 47899999999999986432 2223 224579999999988
Q ss_pred C-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 G-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+ +.+++.|+++++++++.++++..+.....+.++.....+...+ +.+....++..++...+.+.
T Consensus 195 ~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l---------------~tl~~R~e~~~~na~~la~~ 259 (378)
T TIGR01329 195 AGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGI---------------KTLAIRIEKQQENARAIAMF 259 (378)
T ss_pred cCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccC---------------CCHHHHHHHHHHHHHHHHHH
Confidence 5 4568999999866777788887766445556666544333322 24555666777888888889
Q ss_pred HHhcCCccccCCCCcc----cccccccCCCCCceEEeecCc-c-HHHHHHHHHhCCEEeecCCCCC--------------
Q 012785 368 VQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQ-E-IEDCESFLKGNKILTRSGKHFG-------------- 427 (456)
Q Consensus 368 L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~-~-~~~~~~~l~~~gI~v~pg~~fg-------------- 427 (456)
|++++.+.....+|.- .....+.....+..+.+.+.+ . ...+...|+..+|.++-|....
T Consensus 260 L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~ 339 (378)
T TIGR01329 260 LSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIP 339 (378)
T ss_pred HHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCCceeeCCCccccccCC
Confidence 9887654322211110 000111111122334555632 2 4567777777888888876531
Q ss_pred --------CCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 428 --------FSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 --------~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..++.||+|++. |+.+.+++.|.+.|
T Consensus 340 ~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al 373 (378)
T TIGR01329 340 AEVREERGLPEDLVRLSVGI--EDVDDLISDLDIAF 373 (378)
T ss_pred HHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHH
Confidence 125789999964 33445555555544
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=175.28 Aligned_cols=206 Identities=15% Similarity=0.167 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP----SITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~ 217 (456)
...|++.+|++.+. ++.++++|+++++..++..++++|| +|+++.|.|+... ..++..|++++.
T Consensus 66 ~~~Le~~lA~leg~--------~~al~~~sG~~Ai~~al~~ll~~GD----~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~ 133 (431)
T PRK08248 66 TDVFEKRIAALEGG--------IGALAVSSGQAAITYSILNIASAGD----EIVSSSSLYGGTYNLFAHTLPKLGITVKF 133 (431)
T ss_pred HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCC----EEEEccCchhhHHHHHHHHHHhCCEEEEE
Confidence 37888889988852 4677888889999999999999999 9999999997643 345667999887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+ ....+...+.+++++|++|.+
T Consensus 134 vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~-~~~~pl~~gaDivv~S~tK~l 212 (431)
T PRK08248 134 VDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP-YLLRPIEHGADIVVHSATKFI 212 (431)
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc-ccCChhHcCCCEEEEcCcccc
Confidence 765 4555543 36799999999999999987 4789999999999998743 111222456789999999999
Q ss_pred CCCCceEEEEEEeCHHH---------------------------------HHHHHHHHhhccCcCChHHHHHHHHHHHhh
Q 012785 289 GHAGTRIGWALVKDMEV---------------------------------AKKMTKYIELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 289 g~~G~RiG~l~~~~~~~---------------------------------~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
|.+|.++|++++...+. ...............+++..+.+..-|+
T Consensus 213 gg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~-- 290 (431)
T PRK08248 213 GGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLE-- 290 (431)
T ss_pred CCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcC--
Confidence 99999999988742211 0111122223345556655554444443
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
.+....++..++...+.+.|++++.+.
T Consensus 291 -------------tl~~R~~~~~~nA~~la~~L~~~p~v~ 317 (431)
T PRK08248 291 -------------TLHLRMERHSENALAVAKFLEEHEAVE 317 (431)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 344455666777888999999987654
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=179.14 Aligned_cols=277 Identities=13% Similarity=0.112 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhh---cCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDC---VKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~---~g~~~ 215 (456)
.++|+.++++++. ++++|++|+|+++++++++.++. .+|| +|++++++|+......+. .|+++
T Consensus 52 ~~~r~~ia~~~g~------~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd----~Vi~~~~~~~s~~~~~~~~~~~g~~~ 121 (404)
T PRK14012 52 DIARNQIADLIGA------DPREIVFTSGATESDNLAIKGAAHFYQKKGK----HIITSKTEHKAVLDTCRQLEREGFEV 121 (404)
T ss_pred HHHHHHHHHHcCc------CcCeEEEeCCHHHHHHHHHHHHHHhhcCCCC----EEEEecCccHHHHHHHHHHHhCCCEE
Confidence 6778888888864 45789999999999999988764 6788 999999999887655443 48888
Q ss_pred eeeccCc------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCC-CCCCCCCCcEE
Q 012785 216 YKWAGDA------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYT-SITYPADHDLM 280 (456)
Q Consensus 216 ~~~~~d~------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~-~~~~~~~~~i~ 280 (456)
+.++.|. +.++. .+++++++++++||||.+++ ++|+++|+++|+|+++...... .+ ...+-+++
T Consensus 122 ~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~-~~~~~D~~ 200 (404)
T PRK14012 122 TYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDL-SKLKVDLM 200 (404)
T ss_pred EEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCc-ccCCCCEE
Confidence 7766543 33332 36789999999999999987 3889999999999998743221 12 22345788
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHHh------hccCcC-ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE------LNTIGV-SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~------~~~~~~-s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
++|++|.+| |+ ++|+++++ ++...++..... ....+. +........+.++.. +...+..
T Consensus 201 ~~s~~K~~g-p~-g~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-----------~~~~~~~ 266 (404)
T PRK14012 201 SFSAHKIYG-PK-GIGALYVR-RKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-----------KEEMATE 266 (404)
T ss_pred EEehhhccC-CC-ceEEEEEe-cCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHH-----------HhhHHHH
Confidence 899999887 54 69999987 433222222100 011222 222233333444421 2234456
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-----
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF----- 428 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~----- 428 (456)
.++.++.++.+.+.|++++.+.+..... ...+...++|+.+.+ .+.+...+ +++.|..|..|..
T Consensus 267 ~~~~~~l~~~l~~~L~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~l--~~~~i~~g~~~~~~~~~~ 335 (404)
T PRK14012 267 NERIRALRDRLWNGIKDIEEVYLNGDLE--------QRVPGNLNVSFNYVE-GESLIMAL--KDLAVSSGSACTSASLEP 335 (404)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCcc--------ccCCCEEEEEEeCcC-HHHHHHhC--CCeEEEchhhhCCCCCCC
Confidence 6777788888888887765444321100 001111145555432 23455555 3788888766522
Q ss_pred -------------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 -------------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 -------------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..+.||+++.. ++++++.+++.|++++
T Consensus 336 ~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~ 377 (404)
T PRK14012 336 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSI 377 (404)
T ss_pred CHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 13789999975 8899999999999875
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=173.74 Aligned_cols=284 Identities=12% Similarity=0.130 Sum_probs=186.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
..+|++.+|++.+. .+.+.+++++.|+.+++.+++++|| +|+++.++|.+.... +...|+++..
T Consensus 63 v~~lE~~la~leg~--------~~av~~~SG~aAi~~al~all~~GD----~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~ 130 (432)
T PRK06702 63 LAAFEQKLAELEGG--------VGAVATASGQAAIMLAVLNICSSGD----HLLCSSTVYGGTFNLFGVSLRKLGIDVTF 130 (432)
T ss_pred HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHhcCCCC----EEEECCCchHHHHHHHHHHHHHCCCEEEE
Confidence 37889999998853 4678899999999999999999999 999999999876665 5778998876
Q ss_pred ecc--Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc-
Q 012785 218 WAG--DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSK- 286 (456)
Q Consensus 218 ~~~--d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK- 286 (456)
+.. |.+.++. .++++|++++|+||++.+.+ ++|+++|+++|+|++|.-|... -+...+-+|+++|+||
T Consensus 131 vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~-~pl~~GADIvv~S~TKy 209 (432)
T PRK06702 131 FNPNLTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLC-QAFEHGANIIVHSTTKY 209 (432)
T ss_pred ECCCCCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhhC-ChhhcCCCEEEEccccc
Confidence 654 5556643 47899999999999999877 4889999999999998633111 1123345699999999
Q ss_pred ----ccCCCCceE-----EEEEEeCHHHHH---------------------HHH-HHHhhccCcCChHHHHHHHHHHHhh
Q 012785 287 ----STGHAGTRI-----GWALVKDMEVAK---------------------KMT-KYIELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 287 ----~~g~~G~Ri-----G~l~~~~~~~~~---------------------~l~-~~~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
..+++|+++ +|...+++++.+ +.+ ..........+++....+...|+.
T Consensus 210 ~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~T- 288 (432)
T PRK06702 210 IDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLET- 288 (432)
T ss_pred cCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCc-
Confidence 777888887 676554333321 111 222234567888888887777762
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc----ccccccccC-CCCCceEEeecCccHHHHH
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ----FCTFLGRAF-EPQPAFAWLKCEQEIEDCE 410 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~----~~~~~~~~~-~~~~~f~~~~~~~~~~~~~ 410 (456)
++...++..++...+.+.|+.++.+.....+|. .+.+.++.. ...+..+.+.++++.+...
T Consensus 289 --------------l~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~ 354 (432)
T PRK06702 289 --------------LHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAK 354 (432)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHH
Confidence 334455556888999999999876654433321 111111112 1223445667654444444
Q ss_pred HHHHhCCEEe---e----------cCCC------------CCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 411 SFLKGNKILT---R----------SGKH------------FGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 411 ~~l~~~gI~v---~----------pg~~------------fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+.+..-.+.. . |.+. .|..++.||||++. |+.+.+++.|.+.|
T Consensus 355 ~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl--Ed~eDLi~Dl~~Al 422 (432)
T PRK06702 355 EFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGI--EDVSDIIADLEAAL 422 (432)
T ss_pred HHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHH
Confidence 4444333321 1 1110 11135789999964 34555666666654
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-19 Score=176.75 Aligned_cols=277 Identities=12% Similarity=0.115 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhh---hhcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSIT---DCVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~---~~~g~~~ 215 (456)
.++|+.++++++. ++++|++|+|+++++++++.++. .+|+ +|+++.+.|+.+.... +..|+++
T Consensus 50 ~~~r~~la~~~g~------~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~----~Vi~~~~~h~s~~~~~~~~~~~g~~v 119 (402)
T TIGR02006 50 ENARNQVAELIGA------DSREIVFTSGATESNNLAIKGIAHFYKSKGN----HIITSKTEHKAVLDTCRYLEREGFEV 119 (402)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCCHHHHHHHHHHHHHHhhcCCCC----EEEECCCccHHHHHHHHHHHhcCCEE
Confidence 5678888888764 45789999999999999887763 5788 9999999998766544 3458888
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLM 280 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~ 280 (456)
+.++.+ .+.++. .+++++++++|+||||.+.+ ++|+++|+++++|+++..... ++. ...+-+++
T Consensus 120 ~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~-~~~~~~~~~D~~ 198 (402)
T TIGR02006 120 TYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI-PINVNELKVDLM 198 (402)
T ss_pred EEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCc-ccCccccCCCEE
Confidence 777654 333332 35789999999999999987 488999999999999874322 221 22345789
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
+.|..|.+|.+| +|++++. ++...++.... .......+.....++.+.++.+ .+.++..
T Consensus 199 ~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-----------~~~~~~~ 264 (402)
T TIGR02006 199 SISGHKIYGPKG--IGALYVR-RKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIA-----------KEEMAQD 264 (402)
T ss_pred EEehhhhcCCCc--eEEEEEc-cCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHH-----------HHhHHHH
Confidence 999999888557 8999887 43332222111 1112233444444444666632 2346677
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-----
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF----- 428 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~----- 428 (456)
.++.++.++.+.+.|++++.+.+..+.... .+....+.+... +.+.+...+ ++|.++.|..+..
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~-------~p~~~~v~f~~~--~~~~~~~~l--~~i~v~~G~~c~~~~~~~ 333 (402)
T TIGR02006 265 TAHVLALRDRLLNGIKSIEEVYLNGDLEHR-------VPGNLNVSFNYV--EGESLIMAL--KDLAVSSGSACTSASLEP 333 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCcccc-------CCCeEEEEEeCc--CHHHHHHhc--CCEEEechhhcCCCCCCc
Confidence 788999999999999887654443211100 011111222112 333444333 5899988877632
Q ss_pred -------------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 -------------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 -------------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..+.+|+|+.. ++||++.+++.|++++
T Consensus 334 ~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~ 375 (402)
T TIGR02006 334 SYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAI 375 (402)
T ss_pred cHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 13789999975 8999999999998875
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=175.92 Aligned_cols=270 Identities=13% Similarity=0.073 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC---------CCCCCCcEEEEeCCCCCChhh-hhhhcC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS---------QDASEPISVVSAAPYYSSYPS-ITDCVK 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~---------~gd~~~~~Vlv~~P~y~~~~~-~~~~~g 212 (456)
.+|.+.++++++ .+.+++++++++++..+++.+.. +++. .|+..+-+|++... .....+
T Consensus 82 ~~l~~~l~~~~~--------~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~---~i~~~~~~yhg~~~~~~~~~~ 150 (401)
T TIGR01885 82 GEFAEYVTKLFG--------YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQA---IIVSAKGNFHGRTLGAISMST 150 (401)
T ss_pred HHHHHHHHhhcC--------CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCC---EEEEECCCcCcccHHHHhCcC
Confidence 567777777653 24889999999999999998632 2221 78889999987532 222211
Q ss_pred ------------CeEeeecc-Ccccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCC
Q 012785 213 ------------SRLYKWAG-DAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYY 264 (456)
Q Consensus 213 ------------~~~~~~~~-d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~ 264 (456)
..+..++. |.+.++. .+..++++..+++++|.+.+ ++|+++++++|.||+|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~ 230 (401)
T TIGR01885 151 DPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT 230 (401)
T ss_pred CcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 11222221 4444432 24567788788999999876 27999999999999997
Q ss_pred CCCCCCCC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCC
Q 012785 265 WPQYTSIT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 265 ~~~~~~~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
+..+++-. .....+++ ++||.++..|+|+||++.+ +++++.+.......+++.+++.+.++.+.|+.+.+.
T Consensus 231 g~g~~G~~~~~~~~~~~~di~--~~gK~l~~g~~~ig~v~~~-~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~- 306 (401)
T TIGR01885 231 GLGRTGKLLCVDHENVKPDIV--LLGKALSGGVYPVSAVLAD-DDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEE- 306 (401)
T ss_pred CCCccchhhHHhhcCCCCCEE--EeeccccCCCCCcEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhc-
Confidence 64333211 11122333 5789998666999999996 888888765434457788999999999999865432
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC--CccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHH
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG--LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK 414 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~ 414 (456)
...++.++..+++.+.|++++ .+...++.|.+. -++++.+. ....+...|.
T Consensus 307 ------------~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~------------~i~~~~~~~~~~~~~l~~~l~ 362 (401)
T TIGR01885 307 ------------KLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLN------------AIVIDESKTGRTAWDLCLKLK 362 (401)
T ss_pred ------------cHHHHHHHHHHHHHHHHHhccCCceeEEeecCeeE------------EEEeccCcchhHHHHHHHHHH
Confidence 234556666788888888763 112223344441 12333332 3456777888
Q ss_pred hCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 415 GNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 415 ~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
++||.+.|+ .++.+||+.. .+++++++++++|+++++
T Consensus 363 ~~Gv~v~~~-----~~~~lRi~p~l~~t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 363 EKGLLAKPT-----HGNIIRLAPPLVITEEQLDEGLEIIKKVID 401 (401)
T ss_pred hCCEEEEec-----CCCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence 999999874 2678999964 499999999999999875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-18 Score=167.02 Aligned_cols=202 Identities=8% Similarity=0.052 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~ 218 (456)
..|++++|++.+. +++++++|+++|+..++.+++++|| +|++++|.|+..... .+..|+++..+
T Consensus 53 ~~lE~~lA~l~g~--------~~~~~~~sG~~Ai~~al~all~~GD----~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~ 120 (377)
T TIGR01324 53 FALQDAMCELEGG--------AGCYLYPSGLAAVTNSILAFVKAGD----HVLMVDSAYEPTRYFCDIVLKRMGVDITYY 120 (377)
T ss_pred HHHHHHHHHHhCC--------CcEEEECcHHHHHHHHHHHhcCCCC----EEEEcCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 6999999999862 4788999999999999999999999 999999999887643 34567777665
Q ss_pred ccCc-ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcccc
Q 012785 219 AGDA-KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~d~-~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+.+. +.++. .++++|++++|+||+|.+.+ ++|+++|+++|+|++|..+. +.++ ..+-+++++|++|.+
T Consensus 121 d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl--~~gaDivv~S~tK~l 198 (377)
T TIGR01324 121 DPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL--EHGVDISIQAGTKYL 198 (377)
T ss_pred CCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc--ccCceEEEecCceec
Confidence 4422 34432 46899999999999999876 47899999999999998542 2233 345679999999999
Q ss_pred C-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 G-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+ ++++..|++++. ++..++++..........++.....+...++ .+....++..++...+.+.
T Consensus 199 ~G~~d~~gG~v~~~-~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~---------------tl~~R~~~~~~~a~~la~~ 262 (377)
T TIGR01324 199 VGHSDIMIGTVVAN-ARTWDQLREHSYLMGQMVDADDAYTTLRGLR---------------TLGVRLKQHQESSLAIAKW 262 (377)
T ss_pred cCCCCceEEEEEeC-HHHHHHHHHHHHHhCCCCCHHHHHHHHhhhh---------------hHHHHHHHHHHHHHHHHHH
Confidence 5 556889998885 7777777765554455566655555544444 3444566677777788999
Q ss_pred HHhcCCc
Q 012785 368 VQKSGLF 374 (456)
Q Consensus 368 L~~~~~~ 374 (456)
|++++.+
T Consensus 263 L~~~p~v 269 (377)
T TIGR01324 263 LSEQPEV 269 (377)
T ss_pred HHhCCCc
Confidence 9988754
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=174.77 Aligned_cols=260 Identities=10% Similarity=0.013 Sum_probs=169.1
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-C---------------CeEeeeccC-----
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-K---------------SRLYKWAGD----- 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g---------------~~~~~~~~d----- 221 (456)
+.++++++++||++.+++.... .|.. +|+...-+|++....+... | ...++++.+
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARAATGRS---AVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVS 178 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCC---eEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccccccc
Confidence 5899999999999999987643 2322 8999999999976443322 1 111233321
Q ss_pred ----cccc----c----cCCCeEEEEcCC-CCCCccc-ch--------HHhhhcCcEEEeeecCCCCCCCCCC---CCCC
Q 012785 222 ----AKRF----N----KDGPYIELVTSP-NNPDGSV-RQ--------SVVNRSGGILVHDLAYYWPQYTSIT---YPAD 276 (456)
Q Consensus 222 ----~~~l----~----~~~~~~i~v~~P-~NPtG~~-~~--------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~ 276 (456)
.+.+ + ..+..++++... +| +|.. ++ ++|+++|+++|+||+|.+..+.+-. ...+
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~g 257 (425)
T PRK07495 179 VEQSLAALDKLFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHE 257 (425)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccC
Confidence 1111 1 124556666433 45 7744 34 3899999999999999875444421 2233
Q ss_pred CcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 277 HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 277 ~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
.+..+.||||.++ +|+|+||++++ +++++.+.......+++.+++++.++.+.|+.+.++. ..++++++.+.
T Consensus 258 v~pDi~tlsK~l~-~G~pigav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~------l~~~~~~~g~~ 329 (425)
T PRK07495 258 VAADLTTMAKGLA-GGFPLAAVTGR-AEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEED------LCERANQLGNR 329 (425)
T ss_pred CCCCEEeehhhhc-CCccceEEEEc-HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhch------HHHHHHHHHHH
Confidence 4556899999999 99999999997 8888887665556789999999999999988765541 12333333333
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc---------HHHHHHHHHhCCEEeecCCCCC
Q 012785 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE---------IEDCESFLKGNKILTRSGKHFG 427 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~---------~~~~~~~l~~~gI~v~pg~~fg 427 (456)
++++. .+..++.+.+.-.+..| .++|+.+.+. ...+.+.+.++||.+.+. +
T Consensus 330 l~~~L---~~l~~~~~~i~~vrG~G--------------l~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g 389 (425)
T PRK07495 330 LKQRL---ASLRETVPEIADIRGPG--------------FMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTC---G 389 (425)
T ss_pred HHHHH---HHHHhhCCCeeeeecCc--------------eEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec---C
Confidence 33332 22222233222222223 2688887321 245677788999999763 2
Q ss_pred CCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 428 FSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 ~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
...+.+||. +..+++++++++++|.+.+
T Consensus 390 ~~~~~~r~~Ppl~it~~~id~~~~~l~~~l 419 (425)
T PRK07495 390 VHGNVIRFLAPITIQDDVFAEALDILEASI 419 (425)
T ss_pred CCCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 234789998 4359999999999999876
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-18 Score=170.75 Aligned_cols=206 Identities=15% Similarity=0.150 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~ 217 (456)
..+|++++|++.+. +..++++++++++.+++.+++++|| +|+++.|.|+.....+.. .|.++..
T Consensus 60 ~~~Le~~lA~l~g~--------~~~l~~ssG~~Ai~~al~al~~~Gd----~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~ 127 (425)
T PRK06084 60 NDVLEQRVAALEGG--------VGALAVASGMAAITYAIQTIAEAGD----NIVSVAKLYGGTYNLLAHTLPRIGIETRF 127 (425)
T ss_pred HHHHHHHHHHHhCC--------CceeEehhHHHHHHHHHHHHhCCCC----EEEEeCCCcchHHHHHHHhcccceeEEEE
Confidence 37899999998852 2455677777999999999999999 999999999965554432 4656554
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++++++|+|++|..+.. ..+...+-+++++|++|.+
T Consensus 128 ~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~-~~p~~~gaDivv~S~tK~l 206 (425)
T PRK06084 128 AAHDDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL-CRPFEHGADIVVHSLTKYI 206 (425)
T ss_pred ECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChhhcCCCEEEECchhcc
Confidence 443 5555543 36789999999999999987 488999999999999984321 1112335679999999999
Q ss_pred CCCCceEEEEEEeCHHH--HH---H-------------------------H----HHHHhhccCcCChHHHHHHHHHHHh
Q 012785 289 GHAGTRIGWALVKDMEV--AK---K-------------------------M----TKYIELNTIGVSKDSQLRAAKVLKV 334 (456)
Q Consensus 289 g~~G~RiG~l~~~~~~~--~~---~-------------------------l----~~~~~~~~~~~s~~~q~~a~~~L~~ 334 (456)
+.+|.++|.+++.++.+ .+ . + ...........+++..+.+..-|+
T Consensus 207 ~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~- 285 (425)
T PRK06084 207 GGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLE- 285 (425)
T ss_pred cccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcC-
Confidence 98999999988752211 00 0 0 011222345566665555554444
Q ss_pred hhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012785 335 VSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
.+....++..++...+.+.|++++.+.
T Consensus 286 --------------tl~~R~~~~~~na~~la~~L~~~p~v~ 312 (425)
T PRK06084 286 --------------TLALRMERHTENALKVARYLQQHPQVA 312 (425)
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 344556666777788899999887654
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=167.02 Aligned_cols=280 Identities=14% Similarity=0.161 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh---hhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS---ITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~~ 219 (456)
.+|+++++++.+. ...+++++| +.|+..++.+++++|| +|+++++.|+.... .++..|+++..++
T Consensus 50 ~~lE~~la~leg~-------~~~v~~ssG-~~Ai~~~l~all~~Gd----~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~ 117 (397)
T PRK05939 50 AALEAKITKMEGG-------VGTVCFATG-MAAIAAVFLTLLRAGD----HLVSSQFLFGNTNSLFGTLRGLGVEVTMVD 117 (397)
T ss_pred HHHHHHHHHHhCC-------CeEEEeCCH-HHHHHHHHHHHcCCCC----EEEECCCccccHHHHHHHHHhcCCEEEEEC
Confidence 3899999998863 334555555 8999999999999999 99999999987543 4556798888776
Q ss_pred c-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCccccC
Q 012785 220 G-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKSTG 289 (456)
Q Consensus 220 ~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~g 289 (456)
. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+. +.+ ...+.+++++|+||.++
T Consensus 118 ~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~--~~~gaDivv~S~sK~~~ 195 (397)
T PRK05939 118 ATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRP--KDVGASLVINSLSKYIA 195 (397)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccccCc--cccCCEEEEecCeeccc
Confidence 5 4566543 46899999999999999866 47899999999999987432 122 23367899999999999
Q ss_pred CCCceEEEEEEeCHH--------H-------------HHHHHH-HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 290 HAGTRIGWALVKDME--------V-------------AKKMTK-YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 290 ~~G~RiG~l~~~~~~--------~-------------~~~l~~-~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
.+|.++|++++.+.. + ...++. .........++.....+..-++
T Consensus 196 g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~-------------- 261 (397)
T PRK05939 196 GHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAE-------------- 261 (397)
T ss_pred CCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcC--------------
Confidence 899999998874221 1 111211 1122334455655554444333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecC
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg 423 (456)
.+.-..++..++...+.+.|+.++.+.....+|.- ....++.+...+..+-+++++. +...+.+..-.+. ..+
T Consensus 262 -tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~-~~~~~f~~~l~l~-~~~ 338 (397)
T PRK05939 262 -TLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG-IDCFDFLNRLKLV-IKA 338 (397)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCH-HHHHHHHHhCCcc-eEc
Confidence 23334444555888899999998755432222200 0111112223344566677532 3444555444442 111
Q ss_pred CCC--------------------------CCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 424 KHF--------------------------GFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 424 ~~f--------------------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..+ |..++.||||++. |+.+.+++.|.+.|
T Consensus 339 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGl--Ed~~dLi~dl~~Al 394 (397)
T PRK05939 339 THLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGI--EDEADLIADFEQAL 394 (397)
T ss_pred cCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHH
Confidence 111 1125689999964 34556666666655
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-17 Score=165.06 Aligned_cols=263 Identities=16% Similarity=0.137 Sum_probs=166.1
Q ss_pred CceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc-------ccc---CCCe
Q 012785 163 NHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR-------FNK---DGPY 231 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~-------l~~---~~~~ 231 (456)
.+++++|+|+++++.+++.++ .++|| +|++++|+|+.+...+...|++++.+++|.++ ++. .+++
T Consensus 46 ~~~~v~~~sgt~aL~~~l~al~~~pGd----~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk 121 (376)
T TIGR02379 46 TKKALLTPSCTAALEMAALLLDIQPGD----EVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRTK 121 (376)
T ss_pred CCeEEEeCCHHHHHHHHHHHcCCCCcC----EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCce
Confidence 358999999999999999988 78999 99999999999999999999999887766443 222 2567
Q ss_pred EEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCc----cccCCCCceEEEEEEe
Q 012785 232 IELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVS----KSTGHAGTRIGWALVK 301 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~S----K~~g~~G~RiG~l~~~ 301 (456)
+|+ |+||+|...+ ++|+++|++||+|++|.... +.+.+ .+....+.+|| |.+. +|.+.|+++++
T Consensus 122 ~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~--~g~~~~~~~fSf~~~K~l~-~g~~gG~v~~~ 195 (376)
T TIGR02379 122 AIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRA--LGSIGHLGTFSFHETKNYT-SGGEGGALLIN 195 (376)
T ss_pred EEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcc--cCCCCCEEEEeCCCCCcCc-ccCCceEEEEC
Confidence 775 6778898766 38999999999999987532 32221 12222344444 8886 78899999998
Q ss_pred CHHHHHHHHHHHhhcc-----------------CcCChHHHHH-HHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 302 DMEVAKKMTKYIELNT-----------------IGVSKDSQLR-AAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~-----------------~~~s~~~q~~-a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
++++.++++..+.... .|.+.-.+.. |+-.+.. -+.+++..+.-++..+.
T Consensus 196 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~q------------L~~l~~~~~~r~~~~~~ 263 (376)
T TIGR02379 196 DQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQ------------LEQADRINQDRLATWQL 263 (376)
T ss_pred CHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHH------------HHHhHHHHHHHHHHHHH
Confidence 8999999988764210 1211111111 1211121 11222333333333333
Q ss_pred HHHHHHhcC---CccccC-CCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCC----C------CC
Q 012785 364 LRMAVQKSG---LFSVPE-LPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGK----H------FG 427 (456)
Q Consensus 364 l~~~L~~~~---~~~~~~-~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~----~------fg 427 (456)
..+.|.++. ....+. +.+...++ .+.++.++. +.+.+.+.|+++||.++++. . |+
T Consensus 264 y~~~L~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~ 334 (376)
T TIGR02379 264 YQDALKPLEEKGIIELPSIPNGCQHNA---------HMFYIKLKDEDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFG 334 (376)
T ss_pred HHHHhccCCcCCeeeCCCCCCCCeeee---------EEEEEEECCcCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhC
Confidence 555555432 112211 12211110 023566653 57889999999999987432 1 11
Q ss_pred C-----------CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 428 F-----------SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 428 ~-----------~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
. ..+.+.|.+.. ++++++..++.|+++++
T Consensus 335 ~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~~ 376 (376)
T TIGR02379 335 RFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYLS 376 (376)
T ss_pred CCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHhC
Confidence 0 02346666543 88999999999998764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-18 Score=168.38 Aligned_cols=205 Identities=12% Similarity=0.080 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
...|+++++++.+. +..+++++|. .++.+++ .++++|| +|++++|.|+.... .+...|+++..
T Consensus 52 ~~~Le~~la~l~g~-------~~al~~~SG~-~Al~~~l-~~l~pGd----~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~ 118 (380)
T PRK06176 52 RFALEELIADLEGG-------VKGFAFASGL-AGIHAVF-SLFQSGD----HVLLGDDVYGGTFRLFDKVLVKNGLSCTI 118 (380)
T ss_pred HHHHHHHHHHHhCC-------CCEEEECCHH-HHHHHHH-HHcCCCC----EEEEcCCChhHHHHHHHHHHHhcCeEEEE
Confidence 37899999998863 3456676665 6888776 4678999 99999999986543 34556887776
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.. ..+...+-+++++|++|.+
T Consensus 119 vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~-~~p~~~gaDivv~S~tK~l 197 (380)
T PRK06176 119 IDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY-QNPLLLGADIVVHSGTKYL 197 (380)
T ss_pred cCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc-CCccccCCCEEEecCceec
Confidence 654 4555543 36899999999999999977 488999999999999985422 1222345679999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+.+| .-.|++++.++++.++++..+.......++...+.+...++ .+....++..++...+.+.
T Consensus 198 ~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~---------------tl~~R~~~~~~~a~~la~~ 262 (380)
T PRK06176 198 GGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK---------------TLGLRMEAHQKNALCVAEF 262 (380)
T ss_pred cCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC---------------cHHHHHHHHHHHHHHHHHH
Confidence 7555 45677777557888888877665444456655544433332 2344455555677788889
Q ss_pred HHhcCCcc
Q 012785 368 VQKSGLFS 375 (456)
Q Consensus 368 L~~~~~~~ 375 (456)
|++++.+.
T Consensus 263 L~~~p~v~ 270 (380)
T PRK06176 263 LEKHPKVE 270 (380)
T ss_pred HHhCCCee
Confidence 98876543
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=173.78 Aligned_cols=272 Identities=10% Similarity=0.014 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCC--------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKS-------- 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-------- 213 (456)
.+|.+.++++... ..+.+++++++++|++.+++.... .|.. +|+..+-+|++....+.....
T Consensus 89 ~~la~~L~~~~~~------~~~~v~f~~SGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~s~~~~~~~~~~~ 159 (433)
T PRK08117 89 LKLAEELAEITPG------GLDCFFFSNSGAEAIEGALKLAKHVTKRP---YIISFTGCFHGRTLGALSVTTSKSKYRKY 159 (433)
T ss_pred HHHHHHHHHhCCC------CCCEEEEeCcHHHHHHHHHHHHHHhcCCC---eEEEECCCcCCcCHHHHhhcCCCcccccc
Confidence 4555555555411 235899999999999999986432 2321 799999999987654432211
Q ss_pred --------eEeeecc----------------Cccccc--------cCCCeEEEEcCCCCCCcccch---------HHhhh
Q 012785 214 --------RLYKWAG----------------DAKRFN--------KDGPYIELVTSPNNPDGSVRQ---------SVVNR 252 (456)
Q Consensus 214 --------~~~~~~~----------------d~~~l~--------~~~~~~i~v~~P~NPtG~~~~---------~l~~~ 252 (456)
..++++- |.+.++ ..+..+|++...+.-.|.+.+ ++|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~ 239 (433)
T PRK08117 160 YQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDR 239 (433)
T ss_pred CCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHH
Confidence 1111110 111121 124556666555666677654 38999
Q ss_pred cCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHH
Q 012785 253 SGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAA 329 (456)
Q Consensus 253 ~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~ 329 (456)
||+++|.||+|.+....+.. ...+-..-+.||||.+| +|+|+|+++++ +++++.+.......+++.+++++.++.
T Consensus 240 ~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg-~G~pigav~~~-~~i~~~~~~~~~~~T~~~np~~~aaa~ 317 (433)
T PRK08117 240 HGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIA-SGLPLSAVVAS-KELMEQWPLGSHGTTFGGNPVACAAAL 317 (433)
T ss_pred cCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhcc-CCCcceeEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHH
Confidence 99999999999975443321 11122223579999999 99999999996 888888765555567889999999999
Q ss_pred HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc-
Q 012785 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ- 404 (456)
Q Consensus 330 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~- 404 (456)
+.|+.+... + ..++++++.+.+.+.|+++ +.+.-.+..| .++++.+..
T Consensus 318 a~L~~l~~~---------~----l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G--------------l~~gi~~~~~ 370 (433)
T PRK08117 318 ATLEVIKEE---------K----LLDNANEMGAYALERLEVLKEKHPVIGDVRGIG--------------LMIGIEIVDP 370 (433)
T ss_pred HHHHHHHhc---------c----HHHHHHHHHHHHHHHHHHHHhcCCceeeeecCC--------------cEEEEEEecC
Confidence 999865432 1 2333444444444444432 2211122222 245665521
Q ss_pred -------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 405 -------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 -------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
....+.+.+.++||.+.+. +...+++|++. ..+++++++++++|.+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~~Gv~~~~~---g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l 427 (433)
T PRK08117 371 DGEPDGDAVEKILDKCLEKGLLFYLC---GNAGNVLRMIPPLTVTKEEIDEGLDILDEAL 427 (433)
T ss_pred CCCcchHHHHHHHHHHHHCCCEEeec---CCCCCEEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 2345677888999998763 23367999994 459999999999998875
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=172.39 Aligned_cols=254 Identities=11% Similarity=0.041 Sum_probs=168.3
Q ss_pred ceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC----------------eEee--ecc-Cc
Q 012785 164 HHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS----------------RLYK--WAG-DA 222 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~----------------~~~~--~~~-d~ 222 (456)
+.+++++++++|++.+++.... ..+ +|+...++|++....+..... ...+ ++. +.
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~~tgr~----~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARSYTGRQ----AVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDP 193 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhhCCC----eEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccc
Confidence 4788888889999999985432 223 899999999998865543211 0011 111 10
Q ss_pred ---------------cccc----cCCCeEEEEcCCCCCCccc-ch---------HHhhhcCcEEEeeecCCCCCCCCCC-
Q 012785 223 ---------------KRFN----KDGPYIELVTSPNNPDGSV-RQ---------SVVNRSGGILVHDLAYYWPQYTSIT- 272 (456)
Q Consensus 223 ---------------~~l~----~~~~~~i~v~~P~NPtG~~-~~---------~l~~~~~~~iI~De~y~~~~~~~~~- 272 (456)
+.++ .+++.++++ .|-++.|.+ .+ ++|+++|+++|.||++.+..+++..
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~-EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f 272 (443)
T PRK06058 194 KGLATDGEEAAARAITVIEKQVGADNLAAVII-EPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF 272 (443)
T ss_pred cccccchHHHHHHHHHHHHHhhCCCceEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh
Confidence 1111 134455554 676666444 32 3899999999999999976544421
Q ss_pred --C--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 273 --Y--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 273 --~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
. .-..+++ +++|.+| .|+++|+++++ +++++.+.......+++.+++++.++.+.|+.+.+.
T Consensus 273 a~~~~gv~PDiv--~~gK~l~-~G~Pi~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~---------- 338 (443)
T PRK06058 273 ACEHEGIVPDLI--TTAKGIA-GGLPLSAVTGR-AEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEED---------- 338 (443)
T ss_pred HHHhcCCCCCEE--EEccccc-CCCccEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHc----------
Confidence 1 1122343 5689999 99999999997 889888876656679999999999999999865442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCccccCCCCcccccccccCCCCCceEEeec-Cc-----c---HHHHHHHHHh
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQK----SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC-EQ-----E---IEDCESFLKG 415 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~-~~-----~---~~~~~~~l~~ 415 (456)
.+.++++++.+++.+.|++ .+.+.-.++.|.+ +.+.+ ++ + ...+.+.+.+
T Consensus 339 ---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~--------------~~i~~~~~~~~~~~~~~~~~l~~~~~~ 401 (443)
T PRK06058 339 ---DLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAM--------------IAIELVKPGTTEPDAELTKALAAAAHA 401 (443)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceE--------------EEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 2344455555555555554 3333334555655 33333 11 1 2446666778
Q ss_pred CCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhhC
Q 012785 416 NKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 416 ~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l~ 456 (456)
+||.+.++..| .+.+|+. +..+++++++++++|.++++
T Consensus 402 ~Gv~~~~~~~~---~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~ 441 (443)
T PRK06058 402 AGVIVLTCGTY---GNVIRLLPPLVIGDELLREGLDVLEAALA 441 (443)
T ss_pred CCeEEeccCCC---CCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 99999987555 3689996 55699999999999998863
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=174.38 Aligned_cols=270 Identities=14% Similarity=0.082 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC--CCCCCcEEEEeCCCCCChhhhhhhc--------C
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ--DASEPISVVSAAPYYSSYPSITDCV--------K 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~--gd~~~~~Vlv~~P~y~~~~~~~~~~--------g 212 (456)
.+|.+.+++... ..+.+++++++++|++.+++..... ++ +|+..+++|+++...+... +
T Consensus 93 ~~la~~L~~~~~-------~~~~v~~~~sGseA~e~Aik~a~~~~g~~----~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 161 (426)
T PRK00062 93 VELAELVIELVP-------SIEMVRMVNSGTEATMSAIRLARGYTGRD----KIIKFEGCYHGHADSLLVKAGSGAATLG 161 (426)
T ss_pred HHHHHHHHHhCC-------CCCEEEEecCHHHHHHHHHHHHHHHhCCC----eEEEEcCccCCchhhhhhccCccccccC
Confidence 556666655541 1358999999999999999986543 34 8999999999987433221 1
Q ss_pred -----C-------eEeeec-cCcccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCC
Q 012785 213 -----S-------RLYKWA-GDAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYY 264 (456)
Q Consensus 213 -----~-------~~~~~~-~d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~ 264 (456)
. ..+.++ .|.+.++. .++.+|++..-+.-+|.+.+ ++|++|++++|.||+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 241 (426)
T PRK00062 162 LPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT 241 (426)
T ss_pred CCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 0 011111 13433322 24566666533334777765 37999999999999998
Q ss_pred CCCCCCCC--CCC--CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH---HHhhccCcCChHHHHHHHHHHHhhhC
Q 012785 265 WPQYTSIT--YPA--DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK---YIELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 265 ~~~~~~~~--~~~--~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~---~~~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
+....... ... ..+ +.+|||.++ .|+++|+++++ +++++.+.. .....+++.+++.+.++.+.|+.+.+
T Consensus 242 G~r~g~~~~~~~~~~~pD--i~~~gK~l~-~G~p~ga~~~~-~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~ 317 (426)
T PRK00062 242 GFRVALGGAQGYYGVTPD--LTTLGKIIG-GGLPVGAFGGR-REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE 317 (426)
T ss_pred ccccCCccHHHHhCCCcc--hHhhhhHhh-CCCcceeeeEH-HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc
Confidence 54111110 000 112 478999999 99999999986 889888853 23345778999999999999986544
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-------------c
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-------------Q 404 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------------~ 404 (456)
++.+++.++..+..++.+.+.+++++.....++.|.+ +-+.+. +
T Consensus 318 ---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~--------------~~i~l~~~~~~~~~~~~~~~ 374 (426)
T PRK00062 318 ---------PGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSM--------------FGLFFTDEPVTNYADAKKSD 374 (426)
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecce--------------EEEEEecCCCcchhhhcccc
Confidence 2455666666666666666666666543334455655 222221 0
Q ss_pred --cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 405 --EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 --~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
....+...|.++||.+.|.. .+.+|+++..+++++++++++|++++
T Consensus 375 ~~~~~~i~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~~ei~~~~~~l~~~l 422 (426)
T PRK00062 375 TERFARFFHAMLDEGVYLAPSQ-----FEAGFVSAAHTDEDIEKTLEAARKAF 422 (426)
T ss_pred HHHHHHHHHHHHHCCeEeecCC-----cCceeeeccCCHHHHHHHHHHHHHHH
Confidence 12467788889999998832 24567887669999999999999876
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-17 Score=164.23 Aligned_cols=206 Identities=12% Similarity=0.121 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEeeecc
Q 012785 145 FAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYKWAG 220 (456)
Q Consensus 145 lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~~~ 220 (456)
.++++.+++.... ..++.++++|+++++.+++ .++++|| +|++++|.|+.+... ....|+++..++.
T Consensus 134 t~~aLE~~lA~le----g~e~ai~~~SG~aAi~~il-~ll~~GD----~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~ 204 (464)
T PLN02509 134 TRDALESLLAKLD----KADRAFCFTSGMAALSAVT-HLIKNGE----EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 204 (464)
T ss_pred HHHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHH-HHhCCCC----EEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC
Confidence 4555555553321 2346677777789997766 5789999 999999999988643 4466888776654
Q ss_pred -Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCC
Q 012785 221 -DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 221 -d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 291 (456)
|.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+.. ..+...+-+++++|++|.++-+
T Consensus 205 ~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~~pl~~gaDivv~S~tK~l~G~ 283 (464)
T PLN02509 205 TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGH 283 (464)
T ss_pred CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc-CChhhcCCcEEEecCcccccCC
Confidence 3444543 36799999999999999865 378999999999999875421 2222335679999999988643
Q ss_pred C-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 012785 292 G-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK 370 (456)
Q Consensus 292 G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 370 (456)
| +=.|.+++.++.+.++++..+.......++.....+...|+ .+....++.+++.+.+.+.|++
T Consensus 284 gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~---------------tL~~R~~r~~~nA~~la~~L~~ 348 (464)
T PLN02509 284 SDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK---------------TMALRIEKQQENARKIAMYLSS 348 (464)
T ss_pred CccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhh---------------hHHHHHHHHHHHHHHHHHHHhc
Confidence 3 44677777556677766655543344456665444444443 4566677788888999999998
Q ss_pred cCCcc
Q 012785 371 SGLFS 375 (456)
Q Consensus 371 ~~~~~ 375 (456)
++.++
T Consensus 349 ~p~V~ 353 (464)
T PLN02509 349 HPRVK 353 (464)
T ss_pred CCCcc
Confidence 87654
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=171.46 Aligned_cols=267 Identities=14% Similarity=0.110 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC----CC-CCCCcEEEEeCCCCCChh---hhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS----QD-ASEPISVVSAAPYYSSYP---SITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~----~g-d~~~~~Vlv~~P~y~~~~---~~~~~~g~~ 214 (456)
.++|+.++++++. ++++|++|+|++++++.++.++.. +| + .|++....|+.+. ..++..|++
T Consensus 45 ~~~r~~la~~~g~------~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~----~vi~~~~~~~s~~~~~~~~~~~G~~ 114 (353)
T TIGR03235 45 ERARKQVAEALGA------DTEEVIFTSGATESNNLAILGLARAGEQKGKK----HIITSAIEHPAVLEPIRALERNGFT 114 (353)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCCHHHHHHHHHHHHHHhcccCCCC----eeeEcccccHHHHHHHHHHHhcCCE
Confidence 5788888888764 457899999999999999988864 34 4 7888876666543 334556888
Q ss_pred EeeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 215 LYKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 215 ~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
++.++.+ .+.++. .+++++++++|+||||.+++ ++|+++|+++|+|+++..... ++. ...+-++
T Consensus 115 v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~-~~~~~~~~~D~ 193 (353)
T TIGR03235 115 VTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI-TVDLSADRIDL 193 (353)
T ss_pred EEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc-cccccccCCCE
Confidence 8876654 333432 35789999999999999987 478999999999999774322 221 2335678
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHH--HHHH-------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKK--MTKY-------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~--l~~~-------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
++.|..|.+|.+| +|+++++ ++.... +... ........+.....++.+.++.+ .+.+
T Consensus 194 ~~~s~~K~~gp~g--~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~-----------~~~~ 259 (353)
T TIGR03235 194 ISCSGHKIYGPKG--IGALVIR-KRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIA-----------RRNA 259 (353)
T ss_pred EEeehhhcCCCCc--eEEEEEc-cCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHH-----------HhhH
Confidence 9999999888667 8999997 543221 1110 00112234444445555555532 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~- 428 (456)
+..+++++++++.+++.|++. ++++..++... .+..+-+.++. +.+++.+.|++ +|.+.+|..|+.
T Consensus 260 ~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~----------~~~i~~~~~~~~~~~~v~~~L~~-~i~v~~g~~~~~~ 327 (353)
T TIGR03235 260 QAWEVKLRAMRNQLRDALQTL-GVKLNGDPAET----------IPHILNFSIDGVNSEALIVNLRA-DAAVSTGSACSSS 327 (353)
T ss_pred HHHHHHHHHHHHHHHHHhccC-CeEEeCCcccc----------cCCEEEEEeCCcCHHHHHHHHhC-CeEEEchhhcCCC
Confidence 677888999999999999874 45443222111 11123333443 56778888865 999999999964
Q ss_pred --CCCeEEEEecCChhHHHH
Q 012785 429 --SPKYVRISMLDRDENYNL 446 (456)
Q Consensus 429 --~~~~iRis~~~~~e~i~~ 446 (456)
.+.++|.+++.+++++..
T Consensus 328 ~~~~~~~l~~~g~~~~~~~~ 347 (353)
T TIGR03235 328 KYEPSHVLQAMGLDTDRARG 347 (353)
T ss_pred CCCCCHHHHHcCCCHHHhCc
Confidence 244788888766655443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-17 Score=162.66 Aligned_cols=275 Identities=12% Similarity=0.081 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|++++|++++. +++++++|+++++.+++.++ +++|| +|++++|+|..+...+...|++++.++.
T Consensus 35 ~~~le~~la~~~g~--------~~~v~~~sgt~al~lal~al~~~~Gd----~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 35 NQALEQAFCQLTGN--------QHAIAVSSATAGMHITLMALGIGPGD----EVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred HHHHHHHHHHHhCC--------CeEEEECCHHHHHHHHHHHcCCCCCC----EEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 38999999999974 36888999999999999999 78999 9999999999999999999999987766
Q ss_pred Cccc-------ccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC-CCCCCCCCCCCCcEEEecC
Q 012785 221 DAKR-------FNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-PQYTSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d~~~-------l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-~~~~~~~~~~~~~i~i~S~ 284 (456)
|.+. ++. .++++|+ |+||+|...+ ++|+++|+++|+|++|.. ..+.+... ....+.+.||
T Consensus 103 ~~~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~-g~~g~~~~Sf 178 (379)
T PRK11658 103 DRDTLMVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHI-GARGTAIFSF 178 (379)
T ss_pred CCCcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeec-CCCCCEEEeC
Confidence 5433 322 2577776 6678999866 488999999999999983 22222111 1122357788
Q ss_pred ccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc--------------------CcCC-hHHH-HHHHHHHHhhhCCCCCC
Q 012785 285 SKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT--------------------IGVS-KDSQ-LRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~--------------------~~~s-~~~q-~~a~~~L~~~~~~~~~~ 342 (456)
+|...+++.+.|+++.+++++.++++..+.... .|.+ .+.. .++.....
T Consensus 179 ~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~q--------- 249 (379)
T PRK11658 179 HAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQ--------- 249 (379)
T ss_pred CCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHH---------
Confidence 876667778899999877899988877542110 0111 0111 12222221
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC-cccccccccCCCCCceE-EeecC-----ccHHHHHHHHHh
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS-QFCTFLGRAFEPQPAFA-WLKCE-----QEIEDCESFLKG 415 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g-~~~~~~~~~~~~~~~f~-~~~~~-----~~~~~~~~~l~~ 415 (456)
.+.+++..++-++..+.+.+.|++++...+..+.. ...+ .++ .+.++ .+.+.+.+.|++
T Consensus 250 ----l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~r~~~~~~L~~ 315 (379)
T PRK11658 250 ----LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHA----------WHLFIIRVDEERCGISRDALMEALKE 315 (379)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCcee----------EEEEEEEECCccccCCHHHHHHHHHH
Confidence 12345555555566666677777665332322211 0000 011 22332 146778889999
Q ss_pred CCEEeecCC----C------------CCC----CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 416 NKILTRSGK----H------------FGF----SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 416 ~gI~v~pg~----~------------fg~----~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+||.+++.. . |.. ....+.+.+.. ++|+++..++.|++++
T Consensus 316 ~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 316 RGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred CCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 999876321 0 100 12345555432 8899999999999875
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-17 Score=159.74 Aligned_cols=202 Identities=10% Similarity=0.125 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEeeec
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYKWA 219 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~~~ 219 (456)
.|++.++.+.+ .++.+++++ +++|+..++.+++++|| +|++++|.|+++.. .++..|+++..++
T Consensus 68 ~Le~~la~le~-------~~~~v~~sS-G~aAi~~~l~all~~GD----~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd 135 (395)
T PRK05967 68 ALCKAIDALEG-------SAGTILVPS-GLAAVTVPFLGFLSPGD----HALIVDSVYYPTRHFCDTMLKRLGVEVEYYD 135 (395)
T ss_pred HHHHHHHHHhC-------CCCEEEECc-HHHHHHHHHHHhcCCCC----EEEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence 45555554432 234555555 68999999999999999 99999999999875 4567798887776
Q ss_pred cC-cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcccc-
Q 012785 220 GD-AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKST- 288 (456)
Q Consensus 220 ~d-~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~- 288 (456)
.+ .+.++. .++++|++++|+||++.+.+ ++|+++|+++|+|++|..+- +.|+ ..+-+|++.|.+|.+
T Consensus 136 ~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl--~~GaDivv~S~tKy~~ 213 (395)
T PRK05967 136 PEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPL--DFGVDISIHAATKYPS 213 (395)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChh--HcCCCEEEEecccccC
Confidence 53 233443 46899999999999998866 47889999999999998642 3333 345679999999987
Q ss_pred CCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV 368 (456)
Q Consensus 289 g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L 368 (456)
|++++..|+++.. +++.+++...........++...+.+..-|+ .+.-..++..++...+.+.|
T Consensus 214 Gh~d~~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~---------------Tl~lR~~~~~~na~~lA~~L 277 (395)
T PRK05967 214 GHSDILLGTVSAN-EKCWPQLLEAHGTLGLCAGPDDTYQILRGLR---------------TMGIRLEHHRKSALEIARWL 277 (395)
T ss_pred CCCCeeEEEEEcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHcCcc---------------cHHHHHHHHHHHHHHHHHHH
Confidence 4667888987764 7777777766655566677776655555444 34445556667778889999
Q ss_pred HhcCCcc
Q 012785 369 QKSGLFS 375 (456)
Q Consensus 369 ~~~~~~~ 375 (456)
++++.+.
T Consensus 278 ~~hp~v~ 284 (395)
T PRK05967 278 EGRPDVA 284 (395)
T ss_pred HhCCCCc
Confidence 9987553
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=163.47 Aligned_cols=317 Identities=13% Similarity=0.073 Sum_probs=201.1
Q ss_pred hcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
..++..+.++||++|..... ++.+.. .-.+....|..... .-++.+.+.+.... .....++++
T Consensus 61 f~sgi~v~~~GH~hP~Vv~A--v~~q~~-----~~~h~~~~~~~~e~-----~v~~ae~L~~~~p~-----~~~~~~~f~ 123 (447)
T COG0160 61 FLSGIAVLNLGHNHPRVVEA--VKRQLA-----KLNHTHTRDLYYEP-----YVELAEKLTALAPG-----SGLKKVFFG 123 (447)
T ss_pred cccCcchhccCCCCHHHHHH--HHHHHH-----HhhcccCCcccchh-----HHHHHHHHHHhCCc-----ccCCeEEec
Confidence 35556778888888865533 332211 11111111211111 13455555544421 024679999
Q ss_pred cCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCe--------------E--eeecc--------Ccc-
Q 012785 170 TGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSR--------------L--YKWAG--------DAK- 223 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~--------------~--~~~~~--------d~~- 223 (456)
+++++|++.+++.... .|.. .|+...-.|++....+..+-.. + ++++. +.+
T Consensus 124 ~sGaeA~E~AiKiAr~~Tgr~---~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~ 200 (447)
T COG0160 124 NSGAEAVEAAIKIARAYTGRP---GVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEE 200 (447)
T ss_pred CCcHHHHHHHHHHHHHHhCCC---cEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhh
Confidence 9999999999997643 2222 7999999999988766554211 1 12211 000
Q ss_pred -------cccc---------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCCCCC-
Q 012785 224 -------RFNK---------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYPADH- 277 (456)
Q Consensus 224 -------~l~~---------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~~~~- 277 (456)
.++. .++.++++..-+.-.|.+.+ ++|+++|+++|.||++.+.+.++-....++
T Consensus 201 ~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~ 280 (447)
T COG0160 201 CGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHF 280 (447)
T ss_pred hhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhc
Confidence 0111 24677777666888888765 389999999999999998777763322221
Q ss_pred cEE--EecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 278 DLM--LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 278 ~i~--i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
.|. +-++||.+| .|+.+|.++.. +++.+ ........+++.|+++..++.+.|+.+++. ..+++..+
T Consensus 281 gv~PDivt~aK~ig-~G~Pl~avv~r-~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e---------~L~~~a~~ 348 (447)
T COG0160 281 GVEPDIVTLAKSLG-GGLPLSAVVGR-AEIMD-WPPGGHGGTFGGNPVACAAALAVLDVIEEE---------NLLERAAE 348 (447)
T ss_pred CCCCCEEEeccccc-CCCceeEEecc-HHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHc---------cHHHHHHH
Confidence 112 567999999 79999999997 88888 555566678999999999999999976543 23333333
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-------c---cHHHHHHHHHhCCEEeecCCC
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-------Q---EIEDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~---~~~~~~~~l~~~gI~v~pg~~ 425 (456)
.=+..++.|.+.-++++.+--.+..|. ++-+++- . ..+.+.+.+.++|+.+..+.
T Consensus 349 ~G~~l~~~L~~l~~~~~~IgdVRG~Gl--------------m~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G- 413 (447)
T COG0160 349 LGEYLRDRLEELQEKHPLIGDVRGLGL--------------MIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCG- 413 (447)
T ss_pred HHHHHHHHHHHHHhhcCceecccccce--------------EEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccC-
Confidence 333333344443334454444455554 3555542 1 24567788889999888743
Q ss_pred CCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 426 FGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
...+.|||.-. .++|++++++++|.+.+
T Consensus 414 --~~~nviRi~PPL~is~e~~d~~l~il~~al 443 (447)
T COG0160 414 --PHGNVLRILPPLTISDEELDEGLDILEEAL 443 (447)
T ss_pred --CCCcEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 44778999843 49999999999999876
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-17 Score=166.13 Aligned_cols=259 Identities=14% Similarity=0.084 Sum_probs=165.7
Q ss_pred eEEE-ccCHHHHHHHHHHHhcCC-CCCCCcEEEEeCCCCCChhhhhhhcCC-------------eEeeecc---------
Q 012785 165 HIVV-GTGSTQLFQAALYALSSQ-DASEPISVVSAAPYYSSYPSITDCVKS-------------RLYKWAG--------- 220 (456)
Q Consensus 165 ~I~~-t~G~~~al~~~~~~l~~~-gd~~~~~Vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~--------- 220 (456)
.+++ +++++|+++.+++..... |.. +|+...-+|++....+..... .+..++.
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 176 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGRS---NVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVD 176 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCCC---eEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchh
Confidence 4655 588999999999876532 221 899999999998765544311 1111111
Q ss_pred Cccccc----c-----CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-----CCCCC
Q 012785 221 DAKRFN----K-----DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT-----YPADH 277 (456)
Q Consensus 221 d~~~l~----~-----~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~-----~~~~~ 277 (456)
+.+.++ . +++.++++..-+++.|...+ ++|+++|+++|+||++.+.+.++.. ..-+.
T Consensus 177 ~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~P 256 (412)
T TIGR02407 177 TIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEP 256 (412)
T ss_pred HHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCC
Confidence 112222 1 23467777666888898643 3899999999999999865433211 11122
Q ss_pred cEEEecCccccCCC-CceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHh-hhCCCCCCCCcchhHHHHHHH
Q 012785 278 DLMLFTVSKSTGHA-GTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKV-VSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 278 ~i~i~S~SK~~g~~-G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~-~~~~~~~~~~~~~~~l~~~~~ 355 (456)
+ +.+|||.++ + |+|+||++++ +++ +.+.......+++.++++..++.+.|+. +.++ ...++++++.+
T Consensus 257 D--i~~~~K~lg-~~G~pigav~~~-~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~------~l~~~~~~~g~ 325 (412)
T TIGR02407 257 D--IVCLSKSIS-GYGLPLALTLIK-PEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDD------AFEKAVQRKSE 325 (412)
T ss_pred C--EEEechhcc-CCccceeEEEEc-hhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhccc------HHHHHHHHHHH
Confidence 3 446899998 7 9999999997 665 5554444556889999988888888874 4333 12334444444
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc--HHHHHHHHHhCCEEeecCCCCCCCCCeE
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGKHFGFSPKYV 433 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~~~gI~v~pg~~fg~~~~~i 433 (456)
.++++.+.+. +.++.........|+ ++|+.++.. ...+...+.++||.+.+.. ...+.|
T Consensus 326 ~l~~~l~~l~---~~~~~~~~~vrg~Gl-------------~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~---~~~~~l 386 (412)
T TIGR02407 326 IIQERLDRIV---AEYPELIKQVRGRGL-------------MQGIECGDGDLAGKIAKAAFENGLIIETSG---PNDEVI 386 (412)
T ss_pred HHHHHHHHHH---hhCCCceEeeeccee-------------EEEEEecChHHHHHHHHHHHHCCCEEeccC---CCCCEE
Confidence 4444333322 223311111122233 789998642 4567788889999998743 225679
Q ss_pred EEEec--CChhHHHHHHHHHHhhhC
Q 012785 434 RISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 434 Ris~~--~~~e~i~~~l~~L~~~l~ 456 (456)
|++.. .+++++++++++|++.++
T Consensus 387 r~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 387 KLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHh
Confidence 98865 399999999999998874
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=163.33 Aligned_cols=269 Identities=13% Similarity=0.075 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCChhhh---hhhcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSYPSI---TDCVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~~~~---~~~~g~~~ 215 (456)
.++|+.++++++. ++++|++|+|+++++++++..+ .++|| +|++....|+.+... ++..|.++
T Consensus 46 ~~~r~~la~~~g~------~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~----~vl~~~~~h~s~~~~~~~~~~~g~~v 115 (364)
T PLN02651 46 EKARAQVAALIGA------DPKEIIFTSGATESNNLAIKGVMHFYKDKKK----HVITTQTEHKCVLDSCRHLQQEGFEV 115 (364)
T ss_pred HHHHHHHHHHhCC------CCCeEEEeCCHHHHHHHHHHHHHHhccCCCC----EEEEcccccHHHHHHHHHHHhcCCEE
Confidence 5677777777753 4578999999999988887665 36788 999988777654433 33468887
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLML 281 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i 281 (456)
..++.+ .+.++. .+++++++++++||||.+.+ ++|+++|+++++|.++......--....+-++++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~ 195 (364)
T PLN02651 116 TYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMS 195 (364)
T ss_pred EEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEE
Confidence 766543 333332 36789999999999999987 4889999999999999853221112334568999
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
.|..|.+|.+| +|+++++ ++....+.... .......+.....++.+.|+.+ .+..++.+
T Consensus 196 ~s~hK~~gp~G--~g~l~v~-~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~-----------~~~~~~i~ 261 (364)
T PLN02651 196 ISGHKIYGPKG--VGALYVR-RRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELA-----------MKEMDYDE 261 (364)
T ss_pred echhhhCCCCc--eEEEEEc-CCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHH-----------HHhHHHHH
Confidence 99999655444 8999987 54443332221 0122334555556666666633 22346677
Q ss_pred HHHHHHHHHHHHHHHh-cCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC---
Q 012785 355 HQMSTRWKQLRMAVQK-SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS--- 429 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~-~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~--- 429 (456)
++.++.++.+.+.|++ .+++.+..|...- ...+..+-+.+++ +.+.+...|.+ |.++.|+.+...
T Consensus 262 ~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~ 331 (364)
T PLN02651 262 KHMKALRERLLNGLRAKLGGVRVNGPRDPE--------KRYPGTLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLE 331 (364)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEECCCCcc--------cCcCCEEEEEeCCCCHHHHHHHhCC--EEEEchhhcCCCCCC
Confidence 8888888888888875 4555555432100 0111233344443 56677777765 999999866321
Q ss_pred ---------------CCeEEEEecC--ChhHHH
Q 012785 430 ---------------PKYVRISMLD--RDENYN 445 (456)
Q Consensus 430 ---------------~~~iRis~~~--~~e~i~ 445 (456)
.+.+|+|+.. ++||++
T Consensus 332 ~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 332 PSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred cCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 3789999975 667653
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-16 Score=157.56 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+|++.+|++.+. +..++++++++|+.+++.+++++|| +|+++.++|..... .+...|++++.
T Consensus 65 ~~~le~~lA~l~g~--------~~al~~~SG~~Ai~~al~all~pGd----~VIv~~~~y~~t~~~~~~~~~~~G~~v~~ 132 (427)
T PRK05994 65 NAVLEERVAALEGG--------TAALAVASGHAAQFLVFHTLLQPGD----EFIAARKLYGGSINQFGHAFKSFGWQVRW 132 (427)
T ss_pred HHHHHHHHHHHhCC--------CcEEEEcCHHHHHHHHHHHHhCCCC----EEEEecCcchhHHHHHHHHHHhcCcEEEE
Confidence 36788999998863 3567788888999999999999999 99999999996443 35667988887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+. ...+...+-++++.|++|.+
T Consensus 133 vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~-~~~pl~~gaDivv~S~tK~l 211 (427)
T PRK05994 133 ADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPY-LIRPIEHGADIVVHSLTKFL 211 (427)
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccc-cCCccccCCcEEEEcCcccc
Confidence 765 4455543 36899999999999999977 47899999999999998532 11122345679999999999
Q ss_pred CCCCceEEEEEEeCHH-----------------------HHHHHH----------HHHhhccCcCChHHHHHHHHHHHhh
Q 012785 289 GHAGTRIGWALVKDME-----------------------VAKKMT----------KYIELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 289 g~~G~RiG~l~~~~~~-----------------------~~~~l~----------~~~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
|-+|-.+|.+++.... +.+.+. ..........+++..+.+..-|+
T Consensus 212 gg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~-- 289 (427)
T PRK05994 212 GGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIE-- 289 (427)
T ss_pred CCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcc--
Confidence 8778778876663110 111110 01122233455555544444333
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
.+....++..++...+.+.|++++.+..
T Consensus 290 -------------tL~~r~~~~~~~a~~la~~L~~~p~v~~ 317 (427)
T PRK05994 290 -------------TLPLRMQRHSDNALAVAEWLKGHPKVSW 317 (427)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 3555566677778888999998876543
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-17 Score=164.00 Aligned_cols=258 Identities=13% Similarity=0.087 Sum_probs=167.7
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeeccCccc
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWAGDAKR 224 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~d~~~ 224 (456)
+.++++++++||++.+++..... |.. +|+...-+|++....+..... ..++++ |.+.
T Consensus 135 ~~v~f~~SGsEA~e~AlklAr~~t~~~gr~---~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-d~~~ 210 (442)
T TIGR03372 135 KYSFFCNSGTESVEAALKLAKAYQSPRGKF---TFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-DIEA 210 (442)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHhhcCCc---EEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-CHHH
Confidence 57999999999999999876432 332 899999999998755544321 112222 3332
Q ss_pred c----cc-----CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC-----CCCCcEEE
Q 012785 225 F----NK-----DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY-----PADHDLML 281 (456)
Q Consensus 225 l----~~-----~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~-----~~~~~i~i 281 (456)
+ +. .+..++++..-+.-.|...+ ++|+++|+++|.||++.+.+.++... .-..+|
T Consensus 211 ~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDi-- 288 (442)
T TIGR03372 211 MLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDI-- 288 (442)
T ss_pred HHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCe--
Confidence 2 21 23466666554655666654 38999999999999998654444221 112234
Q ss_pred ecCccccCCCC-ceEEEEEEeCHHHHHHHHH--HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 282 FTVSKSTGHAG-TRIGWALVKDMEVAKKMTK--YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 282 ~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~--~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
.+|+|.+| .| +++|.++++ +++.+.+.. .....+++.++++..++.+.|+.+.+. +.+++.++.-+
T Consensus 289 vt~gK~lg-~G~~Pigavv~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~---------~l~~~~~~~G~ 357 (442)
T TIGR03372 289 LCLAKALG-GGVMPIGATIAT-EAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEK---------NLPAQAAIKGD 357 (442)
T ss_pred eeehhhhc-CCcccceEEEec-HHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhc---------cHHHHHHHHHH
Confidence 35999998 88 699999996 888887742 244578999999999999999876543 23333333333
Q ss_pred HHHHHHHHHHHhcC-CccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEE
Q 012785 359 TRWKQLRMAVQKSG-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRI 435 (456)
Q Consensus 359 ~~~~~l~~~L~~~~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRi 435 (456)
..++.|.+...+.+ .+.-.+..|. ++.+.+.. ....+.+.+.++||++.+.. ...+.+||
T Consensus 358 ~l~~~L~~l~~~~~~~i~~vRG~Gl--------------~~giel~~~~~~~~i~~~l~~~Gvl~~~~~---~~~~~lr~ 420 (442)
T TIGR03372 358 FLLDGFQQLAAEYPDLIIEARGKGL--------------LMAIEFRDNEIGYAFAKELFQQNILVAGTL---NNAKSIRI 420 (442)
T ss_pred HHHHHHHHHHHhCCCceEEEecceE--------------EEEEEeCChHHHHHHHHHHHHCCcEEeecC---CCCCEEEE
Confidence 33333333333333 2222233333 46666643 24567788889999997531 23578998
Q ss_pred Eec--CChhHHHHHHHHHHhhh
Q 012785 436 SML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~--~~~e~i~~~l~~L~~~l 455 (456)
... .+++++++++++|.+.+
T Consensus 421 ~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 421 EPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred ECCcccCHHHHHHHHHHHHHhC
Confidence 865 49999999999998864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-16 Score=154.50 Aligned_cols=264 Identities=14% Similarity=0.102 Sum_probs=168.9
Q ss_pred ceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-------cccc---CCCeE
Q 012785 164 HHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-------RFNK---DGPYI 232 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-------~l~~---~~~~~ 232 (456)
+++++++|+++++.+++.++ .++|| +|+++.|+|+.+...+...|++++.++.|.+ .++. .++++
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd----~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~ 122 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGD----EVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRA 122 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCC----EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeE
Confidence 58999999999999988766 68999 9999999999999999999999987766543 3332 25788
Q ss_pred EEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCc--cccCCCCceEEEEEEeCHH
Q 012785 233 ELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVS--KSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 233 i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~S--K~~g~~G~RiG~l~~~~~~ 304 (456)
|+++ ||+|...+ ++|+++|++||+|++|.... +.+.+...-.++.+.||. |.++ +|.+.++++. +++
T Consensus 123 i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~-~g~gG~~~~~-~~~ 197 (375)
T PRK11706 123 IVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYT-AGEGGALLIN-DPA 197 (375)
T ss_pred EEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCcccc-ccCCeEEEEC-CHH
Confidence 8765 57897755 37899999999999997432 222111111234455554 9997 7888777765 589
Q ss_pred HHHHHHHHHhhc-----------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 305 VAKKMTKYIELN-----------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 305 ~~~~l~~~~~~~-----------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+.++++..+... ..|.+...+...++++.. . -+.+++..++-+++.+.+.+.
T Consensus 198 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~--q---------l~~l~~~~~~R~~~~~~~~~~ 266 (375)
T PRK11706 198 LIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWA--Q---------LEAADRINQRRLALWQRYYDA 266 (375)
T ss_pred HHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHH--H---------HHHHHHHHHHHHHHHHHHHHH
Confidence 998887776421 123443333333332221 0 123445555555566666777
Q ss_pred HHhcC---CccccC-CCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCC----C------CC----
Q 012785 368 VQKSG---LFSVPE-LPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGK----H------FG---- 427 (456)
Q Consensus 368 L~~~~---~~~~~~-~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~----~------fg---- 427 (456)
|++++ .+.++. +.+... ...+.|+.++. +.+.+.+.|.++||.++... . ++
T Consensus 267 L~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~ 337 (375)
T PRK11706 267 LAPLAEAGRIELPSIPDDCKH---------NAHMFYIKLRDLEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHG 337 (375)
T ss_pred hcCCCcCCeeecCCCCCCCce---------eeEEEEEEECCcCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCC
Confidence 76653 233221 222111 11145666643 57889999999999876431 0 00
Q ss_pred C-------CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 428 F-------SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 428 ~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
. ..+.+-+.+.. ++++++..++.|+++++
T Consensus 338 ~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~~ 375 (375)
T PRK11706 338 EDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFFS 375 (375)
T ss_pred CChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHhC
Confidence 0 12345555432 78999999999998764
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-16 Score=160.27 Aligned_cols=253 Identities=12% Similarity=0.084 Sum_probs=162.8
Q ss_pred eEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeeccC-------
Q 012785 165 HIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWAGD------- 221 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~d------- 221 (456)
.++++++++||.+.+++.... .|.. +|+...-+|++....+..... ..++++..
T Consensus 104 ~~f~~~sGsEA~e~AlklAr~~tgr~---~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (442)
T TIGR00709 104 LQFPGPSGADAVEAAIKLAKTYTGRT---NVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGI 180 (442)
T ss_pred EEEeCCCHHHHHHHHHHHHHHhcCCC---eEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccC
Confidence 356678999999999987643 2322 899999999998766554321 11111100
Q ss_pred -----c-------c-ccc-----cCCCeEEEEcCCCCCCcccc-h--------HHhhhcCcEEEeeecCCCCCCCCCC--
Q 012785 222 -----A-------K-RFN-----KDGPYIELVTSPNNPDGSVR-Q--------SVVNRSGGILVHDLAYYWPQYTSIT-- 272 (456)
Q Consensus 222 -----~-------~-~l~-----~~~~~~i~v~~P~NPtG~~~-~--------~l~~~~~~~iI~De~y~~~~~~~~~-- 272 (456)
. + .++ ..+..++++...++..|.+. + ++|+++|+++|.||+|.+.++++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a 260 (442)
T TIGR00709 181 GGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFA 260 (442)
T ss_pred CchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhH
Confidence 0 0 111 02456677766566556654 4 3899999999999999976554421
Q ss_pred ---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 273 ---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 273 ---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
..-..+|++ +||.++ .|+++|+++++ ++ .+.+.......+++.+++++.++.+.|+.+.+.
T Consensus 261 ~~~~gv~PDiv~--~gK~l~-~G~Pigav~~~-~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~----------- 324 (442)
T TIGR00709 261 FEHAGIEPDFVV--MSKAVG-GGLPLAVLLIA-PE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDD----------- 324 (442)
T ss_pred HHHcCCCCcEEE--Eccccc-CCcccEEEEEc-hH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhc-----------
Confidence 111234444 899999 69999999997 66 455433334578999999999999999866443
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCccccCCCCcccccccccCCCCCceEEeecCc----------------cHHHH
Q 012785 350 FEFTNHQMSTRWKQLRMAVQK----SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------------EIEDC 409 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------------~~~~~ 409 (456)
.+.+.++++.+.+.+.|++ ++.+.-.+..|.+ +.+.+.. ....+
T Consensus 325 --~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~--------------~~ie~~~~~~~~~~~~~~~~~~~~~~~~ 388 (442)
T TIGR00709 325 --NLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLM--------------QGIMIVDERQSKDATGAYPRDCELAAAI 388 (442)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceE--------------EEEEEccCcccccccccCCcchHHHHHH
Confidence 2333455555555555544 3433334445554 3333311 12446
Q ss_pred HHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 410 ESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 410 ~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
...+.++||++.+... ..+.+|+..+ .+++++++++++|.+.+
T Consensus 389 ~~~~~~~Gvl~~~~~~---~~~~l~~~Ppl~it~~ei~~~~~~l~~~l 433 (442)
T TIGR00709 389 QGACFENGLLLETGGR---EGEVFRLLCPITIDQEECEEGISRFKQAV 433 (442)
T ss_pred HHHHHHCCeEEeecCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6777899999987432 2567887754 49999999999998876
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=160.83 Aligned_cols=256 Identities=13% Similarity=0.066 Sum_probs=159.1
Q ss_pred eEEE-ccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeec-------c
Q 012785 165 HIVV-GTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWA-------G 220 (456)
Q Consensus 165 ~I~~-t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~-------~ 220 (456)
.+++ +++++||++.+++.... .|.. +|+...-+|++....+.... ...++++ .
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 180 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRT---NIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVD 180 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCC---eEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchh
Confidence 5655 58999999999987643 2322 89999999999876544331 1112222 1
Q ss_pred Ccccccc---------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-----CCCCC
Q 012785 221 DAKRFNK---------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT-----YPADH 277 (456)
Q Consensus 221 d~~~l~~---------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~-----~~~~~ 277 (456)
|.+.++. ++..+|++..-+.-.|.... ++|++||+++|+||++.+.+.++-. ...+.
T Consensus 181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~P 260 (425)
T PRK09264 181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITP 260 (425)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCC
Confidence 2232321 13456666555665676443 3899999999999999864333211 01122
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
+ +.+|||.++..|+++|+++++ +++ ..+.......+++.++++..++.+.|+.+... + ...+++
T Consensus 261 D--i~t~~K~l~~~G~pigav~~~-~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~--------~----~l~~~~ 324 (425)
T PRK09264 261 D--IVTLSKSISGYGLPMALVLIK-PEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSD--------D----AFEKEV 324 (425)
T ss_pred C--EEEeccccCCCccceEEEEEc-hhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhh--------h----HHHHHH
Confidence 3 457899999449999999997 766 34433334457888888888877777422111 1 233444
Q ss_pred HHHHHHHHHHHHh----cCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCC
Q 012785 358 STRWKQLRMAVQK----SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPK 431 (456)
Q Consensus 358 ~~~~~~l~~~L~~----~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~ 431 (456)
+++.+.+.+.|++ .+.+. ....| .+.++|+.+++ ....+.+.+.++||.+.+...+ .+
T Consensus 325 ~~~g~~l~~~l~~l~~~~~~~~-~~vrg------------~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~~---~~ 388 (425)
T PRK09264 325 KAKGELVRERLEEIAAKYPGLG-AEVRG------------RGMMQGIDFGDGELAGKIAAEAFENGLIIETSGPE---DE 388 (425)
T ss_pred HHHHHHHHHHHHHHHHhCCCce-eccee------------cccEEEEEecChHHHHHHHHHHHHCCCEEeccCCC---CC
Confidence 4444444444443 33211 11111 12267888854 2456778888999999885432 46
Q ss_pred eEEEEec--CChhHHHHHHHHHHhhh
Q 012785 432 YVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.||++.. .+++++++++++|.+.+
T Consensus 389 ~lr~~p~l~~t~~ei~~~~~~l~~~l 414 (425)
T PRK09264 389 VVKLLPPLTIDEEELEEGLDILEEAV 414 (425)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 7888854 48999999999998876
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=161.37 Aligned_cols=256 Identities=12% Similarity=0.033 Sum_probs=164.5
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeecc-
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWAG- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~~- 220 (456)
++++++++++||++.+++.... ++.. +|+...-+|++....+.... ...++++.
T Consensus 103 ~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~---~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (423)
T PRK05964 103 DHVFFSDSGSVAVEVALKMALQYWRNRGEPGRS---RFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPD 179 (423)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCc---EEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcc
Confidence 5899999999999999987642 2322 89999999998765443321 12223331
Q ss_pred C-----ccccc----c--CCCeEEEEcC-CCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCC
Q 012785 221 D-----AKRFN----K--DGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPAD 276 (456)
Q Consensus 221 d-----~~~l~----~--~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~ 276 (456)
| .+.++ . .+..++++.. .++..|.... ++|+++|+++|.||++.+...++.. ...+
T Consensus 180 d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~ 259 (423)
T PRK05964 180 GYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAG 259 (423)
T ss_pred hhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcC
Confidence 2 22222 1 2445666643 3777787664 3899999999999999865443321 1111
Q ss_pred CcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 277 HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 277 ~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
...-+.++||.++.+++++|+++++ +++.+.+... ....+++.++++..++.+.|+.+.+. +++
T Consensus 260 v~pDi~~~~K~l~gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~---------~~~ 329 (423)
T PRK05964 260 VSPDIMCLSKGLTGGYLPLAATLCT-AEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDE---------PVL 329 (423)
T ss_pred CCCCeeeeehhhhcCcccceEEEEc-HHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhc---------CHH
Confidence 1122457899998333899999886 9998887532 23356788999999999998865432 344
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCccccCCCCcccccccccCCCCCceEEeecCc-----cHHHHHHHHHhCCEEeec
Q 012785 351 EFTNHQMSTRWKQLRMAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-----EIEDCESFLKGNKILTRS 422 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~l~~~gI~v~p 422 (456)
++.. +.-+.+.+.|+++ +.+.-.+..|. ++.+.+.+ ....+.+.|.++||.+.+
T Consensus 330 ~~~~----~~g~~l~~~l~~l~~~~~i~~vrg~Gl--------------~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~ 391 (423)
T PRK05964 330 ERVA----ALSAGLAEGLEPFRDLPGVADVRVLGA--------------IGAVELDRPVLERDGPALRAFALERGVLLRP 391 (423)
T ss_pred HHHH----HHHHHHHHHHHhhccCCCeEEeecccE--------------EEEEEeccCcchhHHHHHHHHHHHCCeEEEe
Confidence 4444 4444444444443 22211222333 34445532 145677888899999987
Q ss_pred CCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 423 GKHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 423 g~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
. .+.+|++.. .+++++++++++|+++++
T Consensus 392 ~------~~~lR~~p~l~~t~edId~~v~~l~~al~ 421 (423)
T PRK05964 392 L------GNTIYLMPPYIITAEELDRITDAIVEVAD 421 (423)
T ss_pred c------CCEEEEeCCcccCHHHHHHHHHHHHHHHh
Confidence 2 257999965 599999999999998763
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=161.40 Aligned_cols=257 Identities=11% Similarity=0.056 Sum_probs=167.1
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCC----------------eEeeecc------
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKS----------------RLYKWAG------ 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~----------------~~~~~~~------ 220 (456)
+.|+++++++||++.+++.... .|.. +|+..+-+|++....+..... ..++++-
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~---~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 180 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRP---YIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMY 180 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCC---eEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccc
Confidence 5899999999999999986532 2322 799999999997654432211 1112110
Q ss_pred ---Cc-------cccc--------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-
Q 012785 221 ---DA-------KRFN--------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT- 272 (456)
Q Consensus 221 ---d~-------~~l~--------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~- 272 (456)
+. +.++ ..+..+|++...++..|.+.+ ++|+++|+++|.||+|.+.+.++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~ 260 (445)
T PRK08593 181 EEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS 260 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH
Confidence 00 1111 134567777766777787744 3899999999999999865443321
Q ss_pred --C--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 273 --Y--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 273 --~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
. .-..+ +.+++|.++ .|+++|+++++ +++++.+.......+++.+++++.++.+.|+.+.+. +
T Consensus 261 a~~~~gv~pD--i~t~gK~l~-~G~p~gav~~~-~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~---------~ 327 (445)
T PRK08593 261 SISHFNITPD--LMSFGKSLA-GGMPMSAIVGR-KEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDE---------S 327 (445)
T ss_pred HHHhcCCCCC--Eeeeccccc-CCcccEEEEEc-HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhc---------c
Confidence 1 11123 447999998 89999999996 899888764444568889999999999999866442 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC--------c--cHHHHHHHHHhCCE
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--------Q--EIEDCESFLKGNKI 418 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--------~--~~~~~~~~l~~~gI 418 (456)
.+++.++.-+..++.|.+..++++.+.-.+..|.+ +.+.+. . ....+...+.++||
T Consensus 328 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~--------------~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv 393 (445)
T PRK08593 328 LLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLS--------------IGIDIVSDKKLKTRDNEAALKICNYCFEHGV 393 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceE--------------EEEEEecCCCcCCCcHHHHHHHHHHHHHCCe
Confidence 33444433333344444433334433334444544 233331 1 13456777889999
Q ss_pred EeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.+.+. ..+.+|++.. .+++++++++++|.+++
T Consensus 394 ~~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l 427 (445)
T PRK08593 394 VIIAV-----AGNVLRFQPPLVITYEQLDTALNTIEQAF 427 (445)
T ss_pred EEecc-----CCCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 99763 2467898865 39999999999998875
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-15 Score=150.15 Aligned_cols=271 Identities=13% Similarity=0.067 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+++++++++++. +++++++|+++++..++.++ ..+|| +|+++.|+|+.+...+...|++++.++.
T Consensus 20 ~~~~~~~la~~~~~--------~~~~~~~sgt~al~~~l~~l~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (352)
T cd00616 20 VREFEKAFAEYLGV--------KYAVAVSSGTAALHLALRALGIGPGD----EVIVPSFTFVATANAILLLGATPVFVDI 87 (352)
T ss_pred HHHHHHHHHHHhCC--------CeEEEECCHHHHHHHHHHHcCCCCCC----EEEeCCcchHHHHHHHHHcCCeEEEEec
Confidence 48999999999862 36778889999999999998 57899 9999999999999999999999887655
Q ss_pred Cc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecC
Q 012785 221 DA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~ 284 (456)
+. +.++. .++++++++ ||+|...+ ++|+++|+++|+|+++..... .........++.+.||
T Consensus 88 ~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~ 164 (352)
T cd00616 88 DPDTYNIDPELIEAAITPRTKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSF 164 (352)
T ss_pred CCCcCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcC
Confidence 43 33332 357888775 47897765 378999999999999974221 1110111135778887
Q ss_pred c--cccCCCCceEEEEEEeCHHHHHHHHHHHhhc---------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 285 S--KSTGHAGTRIGWALVKDMEVAKKMTKYIELN---------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 285 S--K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~---------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
+ |.+ ++-+.|+++.+++++.++++...... ..+.+.+...++...+
T Consensus 165 ~~~K~~--~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l--------------- 227 (352)
T cd00616 165 HPTKNL--TTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQL--------------- 227 (352)
T ss_pred CCCCCC--cccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHH---------------
Confidence 7 876 34457999887678888877654321 1123333333222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC----ccHHHHHHHHHhCCEEeecC
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----QEIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~~~l~~~gI~v~pg 423 (456)
+.++...++.+++.+.+.+.|++++++.+..+.... ......+.+.++ .+.+.+.+.|+++||.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~ 299 (352)
T cd00616 228 EKLDEIIARRREIAERYKELLADLPGIRLPDVPPGV--------KHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVH 299 (352)
T ss_pred HhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCC--------ceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeee
Confidence 234556667778888888989887666655432210 000012333444 25678888999999976521
Q ss_pred CCCCC----------------------CCCeEEEEecC--ChhHHHHHHHHHH
Q 012785 424 KHFGF----------------------SPKYVRISMLD--RDENYNLFVQRLS 452 (456)
Q Consensus 424 ~~fg~----------------------~~~~iRis~~~--~~e~i~~~l~~L~ 452 (456)
-.-.. ..+.+|+++.. ++++++.+++.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 300 YPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred cCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 10000 02689999874 8999999988874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-16 Score=151.13 Aligned_cols=270 Identities=13% Similarity=0.166 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..+|++.+|+|++. ++-+++++|- .++..++.+|++++| .|+...-.+......++..+++.+.|.-
T Consensus 86 h~~LE~~lA~f~g~-------e~al~f~SGy-~AN~~~i~~l~~~~d----li~~D~lnHASiidG~rls~a~~~~f~Hn 153 (388)
T COG0156 86 HVELEEELADFLGA-------EAALLFSSGF-VANLGLLSALLKKGD----LIFSDELNHASIIDGIRLSRAEVRRFKHN 153 (388)
T ss_pred HHHHHHHHHHHhCC-------CcEEEEcccc-hhHHHHHHHhcCCCc----EEEEechhhhhHHHHHHhCCCcEEEecCC
Confidence 58999999999984 4455555554 777888899999999 9999999999999999999999988874
Q ss_pred Ccccccc-------C--CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CCCCCCC-----CCCCC
Q 012785 221 DAKRFNK-------D--GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQYTSIT-----YPADH 277 (456)
Q Consensus 221 d~~~l~~-------~--~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~~~~~~-----~~~~~ 277 (456)
|.+.++. . +.++|++..--.-.|.+.+ +++++|+.++++||+|.- +.-.++. ...+.
T Consensus 154 D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~v 233 (388)
T COG0156 154 DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEV 233 (388)
T ss_pred CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccc
Confidence 5555532 1 2366666655555666544 378999999999999972 3223322 12345
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh-h-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE-L-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~-~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
+|.++||||+||..| ||+.++ ..+++.+.+... . .+.+.+|....++.+.|+.+.+. ...++
T Consensus 234 di~~gTlsKAlGs~G---g~v~g~-~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~------------~~~r~ 297 (388)
T COG0156 234 DIIVGTLGKALGSSG---GYIAGS-AALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEG------------PERRE 297 (388)
T ss_pred eEEEEEchhhhcccC---ceeeCc-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhC------------HHHHH
Confidence 899999999999888 999996 999998887633 2 23445566556677777754433 34677
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC--CCCC
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG--FSPK 431 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg--~~~~ 431 (456)
+++++...+.+.++..+. ...+ +....+.+-+.+ ....+...|++.||.+.+...-- .+..
T Consensus 298 ~L~~~~~~~~~~~~~~~~-~~~~--------------s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gta 362 (388)
T COG0156 298 RLQELAAFFRSLLKALGL-VLLP--------------SESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTA 362 (388)
T ss_pred HHHHHHHHHHHHHHhcCC-ccCC--------------CCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcc
Confidence 777777777766665442 2211 111134444433 34556666777799998744221 2457
Q ss_pred eEEEEecC--ChhHHHHHHHHHHhh
Q 012785 432 YVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 432 ~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.+|++++. ++++|+.+++.|.++
T Consensus 363 rlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 363 RLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHhh
Confidence 89999875 899999999999875
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-16 Score=160.11 Aligned_cols=254 Identities=13% Similarity=0.096 Sum_probs=168.1
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCCe---------------EeeeccCccc
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKSR---------------LYKWAGDAKR 224 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~~---------------~~~~~~d~~~ 224 (456)
+.++++++++||++.+++..... |.. +|+...-+|++....+...... .++++ |.+.
T Consensus 142 ~~v~f~~SGsEAve~AlklAr~~t~~~gr~---~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~-d~~~ 217 (459)
T PRK11522 142 KYSFFCNSGTESVEAALKLAKAYQSPRGKF---TFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFG-NIEA 217 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhccCCCc---EEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCC-CHHH
Confidence 58999999999999999876432 221 7999999999987655433211 11221 3333
Q ss_pred ccc---------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-----CCCCCcEEE
Q 012785 225 FNK---------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT-----YPADHDLML 281 (456)
Q Consensus 225 l~~---------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~-----~~~~~~i~i 281 (456)
++. .+..++++...+.-.|...+ ++|+++|+++|.||++.+.+.++-. ..-..+|+
T Consensus 218 l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv- 296 (459)
T PRK11522 218 MRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDIL- 296 (459)
T ss_pred HHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEE-
Confidence 221 23456666555665676654 3899999999999999865444321 01123443
Q ss_pred ecCccccCCCC-ceEEEEEEeCHHHHHHHHH--HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 282 FTVSKSTGHAG-TRIGWALVKDMEVAKKMTK--YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 282 ~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~--~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
+|+|.+| .| +.+|.+++. +++.+.+.. .....+++.++++..++.+.|+.+.+. + ..++++
T Consensus 297 -t~gK~lg-gG~~Pigav~~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~---------~----l~~~~~ 360 (459)
T PRK11522 297 -CLAKALG-GGVMPIGATIAT-EEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ---------N----LPAQAE 360 (459)
T ss_pred -Eechhhh-CCCccceeEEEc-HHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc---------h----HHHHHH
Confidence 8999998 78 699999996 888877642 234578889999999999999976543 2 334455
Q ss_pred HHHHHHHHHHHhc----C-CccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCC
Q 012785 359 TRWKQLRMAVQKS----G-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPK 431 (456)
Q Consensus 359 ~~~~~l~~~L~~~----~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~ 431 (456)
++-+++.+.|+++ + .+.-.+..|. ++.+.+.. ....+...+.++||.+.+.. ...+
T Consensus 361 ~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl--------------~~giel~~~~~~~~i~~~l~~~Gvl~~~~~---~~~~ 423 (459)
T PRK11522 361 QKGDYLLDGFRQLAREYPDLVQEARGKGM--------------LMAIEFVDNEIGYNFASEMFRQRVLVAGTL---NNAK 423 (459)
T ss_pred HHHHHHHHHHHHHHHhCCCceeeEEecee--------------EEEEEecCchHHHHHHHHHHHCCeEEEecC---CCCC
Confidence 5555555555543 2 1222223333 45566643 24567788889999997632 2357
Q ss_pred eEEEEec--CChhHHHHHHHHHHhhh
Q 012785 432 YVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.+|+..+ .+++++++++++|.+++
T Consensus 424 ~lr~~Ppl~~t~~~id~~l~~l~~~l 449 (459)
T PRK11522 424 TIRIEPPLTLTIEQCEQVLKAARKAL 449 (459)
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHH
Confidence 8998865 39999999999998875
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-16 Score=154.48 Aligned_cols=266 Identities=15% Similarity=0.135 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--------------CCCCCCCcEEEEeCCCCCChhhh
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--------------SQDASEPISVVSAAPYYSSYPSI 207 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------------~~gd~~~~~Vlv~~P~y~~~~~~ 207 (456)
..+|++++|++++. + ..++.+.+..+...++.+|. ..++ .|+...-.+......
T Consensus 149 h~~LE~~LA~f~g~-------e-~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d----~i~~D~~~HaSI~dG 216 (476)
T PLN02955 149 HRLLESSLADLKKK-------E-DCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKV----AIFSDALNHASIIDG 216 (476)
T ss_pred HHHHHHHHHHHHCC-------C-cEEEECChHHHHHHHHHHHhhccccccccccccCCCCc----EEEEeccchHHHHHH
Confidence 37899999999974 3 45555555677667777762 3444 677777777777778
Q ss_pred hhhc----CCeEeeecc-Ccccccc------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CC
Q 012785 208 TDCV----KSRLYKWAG-DAKRFNK------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQ 267 (456)
Q Consensus 208 ~~~~----g~~~~~~~~-d~~~l~~------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~ 267 (456)
++.. +++++.|+. |.+.++. .+.++|++..--+++|.+.+ ++|+++|+++|+||++.. +.
T Consensus 217 ~~ls~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~ 296 (476)
T PLN02955 217 VRLAERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGEN 296 (476)
T ss_pred HHhccccCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCC
Confidence 7776 467766664 6665542 13356665555788998866 388999999999999983 21
Q ss_pred CCCCC----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc--CChHHHHHHHHHHHhhhCCCCC
Q 012785 268 YTSIT----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG--VSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 268 ~~~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~--~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
..+.. ...+.+|+++||||.+|..| ||++++ +++++.++.......++ .++....++.+.++.+...
T Consensus 297 G~G~~e~~g~~~di~ii~~TLsKA~G~~G---Gfi~gs-~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~--- 369 (476)
T PLN02955 297 GGGVAEEFNCEADVDLCVGTLSKAAGCHG---GFIACS-KKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE--- 369 (476)
T ss_pred CCcHHHHhCCCCCCcEEEEeCccchhccC---ceeecH-HHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC---
Confidence 12221 23577899999999988666 999996 88888888664432222 3333344444555533221
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEee
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTR 421 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~ 421 (456)
...+++++++.+++++.+ + +.+. ... -.+++.-+.....+.+.|.++||.+.
T Consensus 370 ---------~~~r~~L~~n~~~fr~~~---G-~~~~---sPI------------~pI~ig~~~~a~~~~~~L~~~Gi~v~ 421 (476)
T PLN02955 370 ---------KWRRKAIWERVKEFKALS---G-VDIS---SPI------------ISLVVGNQEKALKASRYLLKSGFHVM 421 (476)
T ss_pred ---------HHHHHHHHHHHHHHHHhc---C-CCCC---CCE------------EEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 135566777777776631 2 2221 111 01333323345667889999999998
Q ss_pred cCCCCCC---CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 422 SGKHFGF---SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 422 pg~~fg~---~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+-. |.. +...+||+++. ++|+++++++.|.++.
T Consensus 422 ~i~-yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 422 AIR-PPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCL 459 (476)
T ss_pred EEC-CCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHH
Confidence 733 332 34579999975 8999999999998865
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-16 Score=148.98 Aligned_cols=280 Identities=15% Similarity=0.136 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh--cCCCCCCCcEEEEeCCCCCChhhhhhhc---CCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL--SSQDASEPISVVSAAPYYSSYPSITDCV---KSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l--~~~gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~~~ 217 (456)
.+.|+.||+.++. ++++|++|+|+||+.++++... .......+.+|+++.--++.....++.+ |.++..
T Consensus 47 e~AR~~iA~llga------~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vty 120 (386)
T COG1104 47 EEAREQIAKLLGA------DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTY 120 (386)
T ss_pred HHHHHHHHHHhCC------CCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEE
Confidence 5677888888875 5689999999999999999873 2221111228999998998888888887 888888
Q ss_pred eccCcccc------cc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 218 WAGDAKRF------NK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 218 ~~~d~~~l------~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
.++|.+++ +. +++.+|-+...||.||++.+ ++|+++++++.+|.++.- +..++. ....-++...
T Consensus 121 l~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~-Gkipi~~~~~~vD~ls~ 199 (386)
T COG1104 121 LPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAV-GKIPIDLEELGVDLLSF 199 (386)
T ss_pred eCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhc-CceeccccccCcceEEe
Confidence 77775554 22 35677777788999999988 489999999999998873 223332 1223467778
Q ss_pred cCccccCCCCceEEEEEEeCHHHH-HHHHH------HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVA-KKMTK------YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~-~~l~~------~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
|-.|..|..| +|.+++. +.+. ..+.. ..+..|.++ +...+..++++. ..+.++....
T Consensus 200 SaHK~~GpkG--iGaLyv~-~~~~~~p~i~GGgQE~g~RsGTenv--~~Ivg~~~A~~~-----------a~~~~~~~~~ 263 (386)
T COG1104 200 SAHKFGGPKG--IGALYVR-PGVRLEPLIHGGGQERGLRSGTENV--PGIVGFGKAAEI-----------AVEELEEENA 263 (386)
T ss_pred ehhhccCCCc--eEEEEEC-CCCccCceeccCcCCCCCCCCCccH--HHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 8889999888 8999885 3221 11111 111123333 333333444442 1455667788
Q ss_pred HHHHHHHHHHHHHHhc-CCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC----
Q 012785 356 QMSTRWKQLRMAVQKS-GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS---- 429 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~-~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~---- 429 (456)
+++..|+.+.+.|.+. +.+.+..... +.-++.+.+.++. ..+.+...|..+||.+..|+.|..+
T Consensus 264 ~~~~lr~~l~~~l~~~~p~~~~~g~~~----------~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~p 333 (386)
T COG1104 264 RLRKLRDRLEDGLLEIIPDVYLNGDDE----------PRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEP 333 (386)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEcCCcc----------cCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCc
Confidence 8889999999999875 5544433211 1122344555554 5778888999999999999998421
Q ss_pred --------------CCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 430 --------------PKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 --------------~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+.|||||+. ++++++.+++.|++++
T Consensus 334 ShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i 375 (386)
T COG1104 334 SHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEII 375 (386)
T ss_pred cHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999986 8899999999998875
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-15 Score=151.38 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
..+|++.+|++.+. +..++|+++++|+++++.++.++|| +|+++...|......+ ...|+++..
T Consensus 66 ~~~le~~lA~l~g~--------~~av~~sSGt~Al~~al~~ll~~Gd----~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~ 133 (433)
T PRK08134 66 VAVLEERVAALEGG--------VGAIATASGQAALHLAIATLMGAGS----HIVASSALYGGSHNLLHYTLRRFGIETTF 133 (433)
T ss_pred HHHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHHhCCCC----EEEEeCCccHHHHHHHHHHHhhCCeEEEE
Confidence 47899999998863 3578899999999999999999999 9999999998765544 447888887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++.+|+||+|.+.+ ++|+++|+++|+|.++..+.. ..+...+-++++.|.+|.+
T Consensus 134 vd~~d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~-~~pl~~GaD~vv~S~tK~l 212 (433)
T PRK08134 134 VKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYL-LRPFEHGADLVYHSATKFL 212 (433)
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCccccc-CCchhcCCCEEEecccccc
Confidence 765 4555543 47899999999999999977 488999999999999875432 2223446689999999999
Q ss_pred CCCCceEEEEEE
Q 012785 289 GHAGTRIGWALV 300 (456)
Q Consensus 289 g~~G~RiG~l~~ 300 (456)
|.+|..+|.+++
T Consensus 213 ~g~g~~~gG~v~ 224 (433)
T PRK08134 213 GGHGTAIGGVLV 224 (433)
T ss_pred CCCCCceEEEEE
Confidence 888888888766
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=151.48 Aligned_cols=283 Identities=15% Similarity=0.170 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~ 218 (456)
..|++.|+++.+ .+.++++++++.|+..++.+++++|| +|++....|.+....++. .|+++..+
T Consensus 58 ~~le~~la~Le~--------g~~a~~~~SGmaAi~~~l~~ll~~Gd----~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~ 125 (386)
T PF01053_consen 58 RALEQRLAALEG--------GEDALLFSSGMAAISAALLALLKPGD----HIVASDDLYGGTYRLLEELLPRFGVEVTFV 125 (386)
T ss_dssp HHHHHHHHHHHT---------SEEEEESSHHHHHHHHHHHHS-TTB----EEEEESSSSHHHHHHHHHCHHHTTSEEEEE
T ss_pred HHHHHHHHHhhc--------ccceeeccchHHHHHHHHHhhcccCC----ceEecCCccCcchhhhhhhhcccCcEEEEe
Confidence 577778877764 35788899999999999999999999 999999999987766654 58887776
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcC-cEEEeeecCCCC-CCCCCCCCCCCcEEEecCccc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSG-GILVHDLAYYWP-QYTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~-~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~ 287 (456)
+. |.+.++. .++++|++.+|.||+..+.+ ++++++| +++|+|+.+..| ...|+ ..+-+|++.|.+|.
T Consensus 126 d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL--~~GaDivv~S~TKy 203 (386)
T PF01053_consen 126 DPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPL--ELGADIVVHSATKY 203 (386)
T ss_dssp STTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GG--GGT-SEEEEETTTT
T ss_pred CchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeeccC--cCCceEEEeecccc
Confidence 65 5566643 47899999999999999877 4788998 999999998754 22333 33568999999999
Q ss_pred cC-CCCceEEEEEEeC-HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 288 TG-HAGTRIGWALVKD-MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 288 ~g-~~G~RiG~l~~~~-~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
++ +..+=.|.+++++ +++.++++..........++.....+..-|+ .+.-..++..++...+.
T Consensus 204 l~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~---------------Tl~~R~~~~~~nA~~lA 268 (386)
T PF01053_consen 204 LSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLR---------------TLPLRMERQNENAEALA 268 (386)
T ss_dssp TTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHT---------------THHHHHHHHHHHHHHHH
T ss_pred ccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCC---------------cHHHHHHHHHHHHHHHH
Confidence 84 5556678888765 5888888888776777778877777777665 24445666778888899
Q ss_pred HHHHhcCCcc-ccCCC---CcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEE---eecCCC-------------
Q 012785 366 MAVQKSGLFS-VPELP---SQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKIL---TRSGKH------------- 425 (456)
Q Consensus 366 ~~L~~~~~~~-~~~~~---g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~---v~pg~~------------- 425 (456)
+.|++++.+. +..|. -..+...++.....+..+.+++++..+.+.+.+..-.+. +.-|..
T Consensus 269 ~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~ 348 (386)
T PF01053_consen 269 EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISHPASTSHR 348 (386)
T ss_dssp HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTT
T ss_pred HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCcccccccccchhhc
Confidence 9999987654 22220 000111112222333356777775544555555444432 111111
Q ss_pred ---------CCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 426 ---------FGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 426 ---------fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.|..++.||+|++ -|+.+.+++.|++.|+
T Consensus 349 ~~~~e~~~~~Gi~~~liRlSvG--lEd~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 349 SLSPEERAEAGISDGLIRLSVG--LEDPDDLIADLEQALE 386 (386)
T ss_dssp TSCHHHHHHTTS-TTEEEEE----SS-HHHHHHHHHHHHH
T ss_pred cCChhhhhccCCCCCeeEEEec--cCCHHHHHHHHHHhcC
Confidence 1113578999985 4456777777777663
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=155.09 Aligned_cols=268 Identities=13% Similarity=0.084 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC------CCCCCCcEEEEeCCCCCChhhhhhhcCC-eE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS------QDASEPISVVSAAPYYSSYPSITDCVKS-RL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-~~ 215 (456)
.+++..+++.+... ...+.+++++++++|++.+++.+.. ++.. +|+..+.+|++....+..... ..
T Consensus 77 ~~~~~~la~~l~~~----~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~---~ii~~~~~yHG~t~~~~~~s~~~~ 149 (395)
T PRK03715 77 NEPMAKLAGLLTQH----SCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAY---EIITFDHSFHGRTLATMSASGKPG 149 (395)
T ss_pred CHHHHHHHHHHhhc----cCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCc---EEEEECCCcCCChHHHHhhcCCcc
Confidence 45667778877532 1235899999999999999998852 2221 799999999987654443321 10
Q ss_pred ---------eeec----cCcccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCC
Q 012785 216 ---------YKWA----GDAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTS 270 (456)
Q Consensus 216 ---------~~~~----~d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~ 270 (456)
..+. .|.+.++. +++.++++...++..|...+ ++|+++|+++|.||++.+.+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG 229 (395)
T PRK03715 150 WDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG 229 (395)
T ss_pred cccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc
Confidence 0111 13344432 35667777655666666643 27999999999999998654443
Q ss_pred CC---C--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCc
Q 012785 271 IT---Y--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSE 345 (456)
Q Consensus 271 ~~---~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~ 345 (456)
-. . .-..+ +.+|+|.+| .|+.+|.++++ +++.. +.......+++.++++..++.+.|+.+.+.
T Consensus 230 ~~~a~~~~gv~PD--i~t~gK~lg-~G~p~~av~~~-~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~------- 297 (395)
T PRK03715 230 TLFAYELSGIEPD--IMTLGKGIG-GGVPLAALLAK-AEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAP------- 297 (395)
T ss_pred chhhHhhcCCCCc--eeeehhhhh-CCcceEEEEEc-ccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhc-------
Confidence 21 1 11223 468899999 78999999986 77652 222223457788999999999999876432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCcc-HHHHHHHHHhC---C
Q 012785 346 DECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE-IEDCESFLKGN---K 417 (456)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~l~~~---g 417 (456)
+ .+++++++.+.+.+.|+++ + +...+..|. ++-+.+.++ ...+.+.+.+. |
T Consensus 298 --~----l~~~~~~~g~~l~~~L~~l~~~~~-i~~vrG~Gl--------------m~~i~l~~~~~~~~~~~~~~~~~~G 356 (395)
T PRK03715 298 --G----FLEGVRARGEYLKEKLLELSEERG-LEGERGEGL--------------LRALLLGKDIGPQIVEKARDMQPDG 356 (395)
T ss_pred --c----HHHHHHHHHHHHHHHHHHHhhcCC-cCeEEccee--------------EEEEEecCchHHHHHHHHHhccCCC
Confidence 2 3444555555555555542 3 222233333 355555432 34555555555 9
Q ss_pred EEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|.+.+. ..+.+|++... +++++++++++|++++
T Consensus 357 i~~~~~-----~~~~lR~~p~l~~t~~ei~~~~~~l~~~l 391 (395)
T PRK03715 357 LLLNAP-----RPNLLRFMPALNVTTEEIDQMIAMLRSVL 391 (395)
T ss_pred EEEeec-----CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 998752 24689999763 8999999999999876
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-15 Score=148.22 Aligned_cols=273 Identities=12% Similarity=0.064 Sum_probs=177.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. ++.++++|+++++.+++.++ .++|| +|+++.|+|..+...+...|++++.+++
T Consensus 31 ~~~le~~la~~~g~--------~~~v~~~sgt~al~~~l~al~~~~Gd----~Viv~~~~~~~~~~~~~~~G~~~~~~~~ 98 (380)
T TIGR03588 31 VPAFEEALAEYVGA--------KYAVAFNSATSALHIACLALGVGPGD----RVWTTPITFVATANCALYCGAKVDFVDI 98 (380)
T ss_pred HHHHHHHHHHHHCC--------CeEEEEcCHHHHHHHHHHHcCCCCCC----EEEeCCcchHHHHHHHHHcCCEEEEEec
Confidence 38999999999974 24566678899999999998 78999 9999999999999999999999987765
Q ss_pred Cc-------cccc---c----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCC--CCc
Q 012785 221 DA-------KRFN---K----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPA--DHD 278 (456)
Q Consensus 221 d~-------~~l~---~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~--~~~ 278 (456)
|. +.++ . .++++|++ .||+|...+ ++|+++|+++|+|+++.... +...+... ..+
T Consensus 99 ~~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d 175 (380)
T TIGR03588 99 DPDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYAD 175 (380)
T ss_pred CCCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccc
Confidence 43 2222 1 35677775 456887754 38899999999999998432 22211111 237
Q ss_pred EEEecCc--cccCCCCceEEEEEEeCHHHHHHHHHHHhhcc-------------------------CcCChHHHHHHHHH
Q 012785 279 LMLFTVS--KSTGHAGTRIGWALVKDMEVAKKMTKYIELNT-------------------------IGVSKDSQLRAAKV 331 (456)
Q Consensus 279 i~i~S~S--K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~-------------------------~~~s~~~q~~a~~~ 331 (456)
+.+.||+ |.++. | ..|+++..++++.++++..+.... ...+.+....+..-
T Consensus 176 ~~~~S~~~~K~~~~-~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~q 253 (380)
T TIGR03588 176 ATVFSFHPVKIITT-A-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQ 253 (380)
T ss_pred eEEEecCCCCcccc-c-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHH
Confidence 8888876 77753 3 578888888889888876543110 11122222222222
Q ss_pred HHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC-CCcccccccccCCCCCceEEeecC----ccH
Q 012785 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL-PSQFCTFLGRAFEPQPAFAWLKCE----QEI 406 (456)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~~~f~~~~~~----~~~ 406 (456)
|+ .+++..++-+++.+.+.+.|++++.+....+ .+...++ .+..+.++ .+.
T Consensus 254 L~---------------~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~r 309 (380)
T TIGR03588 254 LK---------------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAW---------HLYPILLDQEFGCTR 309 (380)
T ss_pred HH---------------HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEE---------EEEEEEECCcCCCCH
Confidence 22 2344555556666677777877665443322 1111100 01222332 256
Q ss_pred HHHHHHHHhCCEEeecCCC-------C----CC---------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 407 EDCESFLKGNKILTRSGKH-------F----GF---------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 407 ~~~~~~l~~~gI~v~pg~~-------f----g~---------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+.+.+.|.++||.++.... | .. ..+.+++.+.. ++++++..++.|+++|
T Consensus 310 ~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 310 KEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 7888899999998874321 0 00 12568887653 8999999999999875
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-16 Score=157.41 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=167.4
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeec-----
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWA----- 219 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~----- 219 (456)
+.+++++++++|++.+++..... |.....+|+...-+|++....+.... ...++.+
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 192 (460)
T PRK06541 113 NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRA 192 (460)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccc
Confidence 58999999999999999876431 21001189999999998876544321 1111111
Q ss_pred ----cCc--------cccc-------cCCCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCCC
Q 012785 220 ----GDA--------KRFN-------KDGPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTS 270 (456)
Q Consensus 220 ----~d~--------~~l~-------~~~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~ 270 (456)
.|. +.++ ..+..+|++ .| ++++|.+.+ ++|+++|+++|.||+|.+.+.++
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~-EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G 271 (460)
T PRK06541 193 PELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFL-EPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG 271 (460)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEE-CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc
Confidence 111 1221 123344554 55 899998765 38999999999999997654333
Q ss_pred CC-----CCCCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHH----HhhccCcCChHHHHHHHHHHHhhhCCCC
Q 012785 271 IT-----YPADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKY----IELNTIGVSKDSQLRAAKVLKVVSDSCK 340 (456)
Q Consensus 271 ~~-----~~~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~----~~~~~~~~s~~~q~~a~~~L~~~~~~~~ 340 (456)
.. ..-..+++ +|||.++ .|+ ++|+++++ +++++.+... ....+++.++++..++.+.|+.+.+.
T Consensus 272 ~~~a~~~~gv~PDiv--t~gK~l~-~G~~pigav~~~-~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~-- 345 (460)
T PRK06541 272 EMFGCERFGYVPDII--TCAKGIT-SGYSPLGAMIAS-DRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFERE-- 345 (460)
T ss_pred hhhhhhhcCCCCCEE--Eeccccc-CCccceeEEEEc-HHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc--
Confidence 21 01122343 6999999 897 99999997 8888877532 12358888999999999998865432
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCc----------c--
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------E-- 405 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~-- 405 (456)
...++++++.+++.+.|+++. .+...+..|.+ .-+.+.. .
T Consensus 346 -----------~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~--------------~~ie~~~~~~~~~~~~~~~~ 400 (460)
T PRK06541 346 -----------GLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYF--------------YGIELVKDKATKETFTDDES 400 (460)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceE--------------EEEEEecCcccccCCcchhh
Confidence 245666777777777776652 22223344544 3333310 0
Q ss_pred ---H-HHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 406 ---I-EDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 ---~-~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
. ..+...+.++||.+.+.. .+.+.+||+.. .+++++++++++|.+.+
T Consensus 401 ~~~~~~~~~~~l~~~Gi~~~~~~---~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l 453 (460)
T PRK06541 401 ERLLRGFLSPALFEAGLYCRADD---RGDPVVQLAPPLISGQEEFDEIEQILRSVL 453 (460)
T ss_pred hhhHHHHHHHHHHhCCeEEEecC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 0 245567789999998721 13578999976 59999999999998876
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-17 Score=149.17 Aligned_cols=335 Identities=17% Similarity=0.154 Sum_probs=221.6
Q ss_pred ccccccchhhhcCCCCeEEecCCC-------CCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHH
Q 012785 80 SSLTSTDIQSQDGGERIINVDHGD-------PTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRL 152 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~l~~g~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~ 152 (456)
++.-.++..........|||+.|. |... | .+.+++. +....+. .-.|.+..|+ +|+.+..+++
T Consensus 38 pILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL-~-~VrkAE~-ql~~~~l--dKEYlpI~Gl-----~eF~k~sakL 107 (427)
T KOG1411|consen 38 PILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVL-P-SVRKAEQ-QLASLSL--DKEYLPITGL-----AEFNKLSAKL 107 (427)
T ss_pred CcccHHHHHhcCCCcceeeecccceecCCCCeeee-H-HHHHHHH-HHhhhcc--cchhccccch-----HHHHHHHHHH
Confidence 333334332234445679999994 2222 2 2332222 1111222 2369999995 9999999999
Q ss_pred HHHhcCccCCCceEE--EccCHHHHHHHHHHHh--cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec--------c
Q 012785 153 HKVVGNAITENHHIV--VGTGSTQLFQAALYAL--SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA--------G 220 (456)
Q Consensus 153 ~~~~g~~~~~~~~I~--~t~G~~~al~~~~~~l--~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~ 220 (456)
.-..+.+...+++|+ -|-++|.++.+....| .-++. .|++++|+|.+...++..+|+.+..+. +
T Consensus 108 a~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~----~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gl 183 (427)
T KOG1411|consen 108 ALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSR----DIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGL 183 (427)
T ss_pred hhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhcccc----ceeecCCcccccCccccccCcceeeeeecccccccc
Confidence 743344444455654 3556667777666655 33555 899999999999999999998874322 3
Q ss_pred Ccccccc------CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCCC----------CCCCC
Q 012785 221 DAKRFNK------DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTSI----------TYPAD 276 (456)
Q Consensus 221 d~~~l~~------~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~~----------~~~~~ 276 (456)
|.+++-. .+..+++..+.|||||+..+. +.++.+.+.+.|.+|.++.--.+ .....
T Consensus 184 d~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~ 263 (427)
T KOG1411|consen 184 DFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGH 263 (427)
T ss_pred chHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCC
Confidence 5555421 244566667789999998772 56789999999999996422111 12345
Q ss_pred CcEEEecCccccCCCCceEEEE--EEeCHHHHH----HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 277 HDLMLFTVSKSTGHAGTRIGWA--LVKDMEVAK----KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 277 ~~i~i~S~SK~~g~~G~RiG~l--~~~~~~~~~----~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
+.+++-||+|.+|+.|-|+|.+ ++.+++.+. +++...+.+..+++.-...++..+|....-. .++-..+
T Consensus 264 ~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~-----~~W~~ev 338 (427)
T KOG1411|consen 264 EILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLK-----NQWLGEV 338 (427)
T ss_pred ceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHH-----HHHHHHH
Confidence 6888999999999999999986 555555544 4455566677888888888888888743221 1334556
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSP 430 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~ 430 (456)
+.+.+++...|+.|.+.|+..+.. +.+ ..+....|+|.+-.+ ..+++..+.+++.|+... +
T Consensus 339 k~MadRi~~mR~~L~d~L~~~gs~------~~W----~hI~~QIGMF~fTgl--~peQv~~l~ke~~iYmT~-------d 399 (427)
T KOG1411|consen 339 KGMADRIISMRQQLFDALEKEGSP------GNW----SHITKQIGMFCFTGL--NPEQVDWLTKEYHIYLTK-------D 399 (427)
T ss_pred HHHHHhhhhhHHHHhHHhhcCCCC------ccH----HHHHHhhheeeecCC--CHHHHHHHHhhheeeecc-------C
Confidence 777888888899999988865310 011 012334455777777 577888888999998864 2
Q ss_pred CeEEEEecC-ChhHHHHHHHHHHhh
Q 012785 431 KYVRISMLD-RDENYNLFVQRLSKI 454 (456)
Q Consensus 431 ~~iRis~~~-~~e~i~~~l~~L~~~ 454 (456)
+ |||++. +..+.+.+.+.|.++
T Consensus 400 G--RiS~aG~ss~nV~yLa~aih~v 422 (427)
T KOG1411|consen 400 G--RISMAGLSSSNVPYLADAIHAV 422 (427)
T ss_pred c--eEeeccccccCCcccchhhHhH
Confidence 1 999987 666777777777655
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=150.99 Aligned_cols=265 Identities=14% Similarity=0.112 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec-c
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA-G 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~-~ 220 (456)
..++++.+|++++. ++.+++++|.+ ++..++..+.+++| .|++..-.+.......+......+.|+ .
T Consensus 58 ~~~~e~~la~~~~~-------~~~l~~~sG~~-a~~~~~~~~~~~~d----~ii~d~~~H~sv~~~~~~~~~~~~~~~~~ 125 (370)
T PRK05937 58 LDDLEHKIAHFHGA-------PEAFIVPSGYM-ANLGLCAHLSSVTD----YVLWDEQVHISVVYSLSVISGWHQSFRHN 125 (370)
T ss_pred HHHHHHHHHHHhCC-------CeEEEECChHH-HHHHHHHHhCCCCC----EEEEEhhhhHHHHHHHHHcCCceEEecCC
Confidence 47899999999974 34577778774 44455555666776 555545555444455554433334444 3
Q ss_pred Ccccccc---------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC----CCCC---CCCCCcE
Q 012785 221 DAKRFNK---------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TSIT---YPADHDL 279 (456)
Q Consensus 221 d~~~l~~---------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~~i 279 (456)
|.+.++. .++.++++++++|+||.+.+ ++|+++|+++++||+|....+ .+.. ...+.++
T Consensus 126 d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~ 205 (370)
T PRK05937 126 DLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYA 205 (370)
T ss_pred CHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcE
Confidence 5554432 13456778899999999987 488999999999999984211 1111 1122347
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHH--hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI--ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~--~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
.+.||||.+|..|.+ ++.. +++.+.+.... .....+.+++...++.++++.+.+. -+..++++
T Consensus 206 ~~~tlsK~~g~~G~~---vl~~-~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~-----------~~~~~~~l 270 (370)
T PRK05937 206 VLVTYSKALGSMGAA---LLSS-SEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQE-----------GELARKQL 270 (370)
T ss_pred EEEechhhhhcCceE---EEcC-HHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhC-----------cHHHHHHH
Confidence 789999999977833 4453 56555544221 1123456677666666666643222 12345667
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISM 437 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~ 437 (456)
++.++++.+.|.... .+.. ..+.++. ...+.+.+.|.++||.+... +....+.+|+|+
T Consensus 271 ~~l~~~l~~~l~~~~-------~~~~------------~~i~~~~-~~~~~~~~~L~~~gi~v~~~--~~~~~~~iRis~ 328 (370)
T PRK05937 271 FRLKEYFAQKFSSAA-------PGCV------------QPIFLPG-ISEQELYSKLVETGIRVGVV--CFPTGPFLRVNL 328 (370)
T ss_pred HHHHHHHHHhcCCCC-------CCCE------------EEEEeCC-hhHHHHHHHHHHCCeeEEee--CCCCCCEEEEEc
Confidence 777777776664321 0111 0123321 13467888899999988742 122356899999
Q ss_pred cC--ChhHHHHHHHHHHhhh
Q 012785 438 LD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 438 ~~--~~e~i~~~l~~L~~~l 455 (456)
.. ++|+++++++.|++++
T Consensus 329 ~~~~t~edid~l~~~L~~~~ 348 (370)
T PRK05937 329 HAFNTEDEVDILVSVLATYL 348 (370)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 74 8999999999998875
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=139.54 Aligned_cols=293 Identities=16% Similarity=0.151 Sum_probs=199.3
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE--EEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCC
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI--VVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSS 203 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I--~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~ 203 (456)
...|-|..|+ +.++++.++.+-....+...++++ +-+-+++.|+.+....|.. +.. .|.+..|+|.+
T Consensus 67 NHEYLpi~Gl-----~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~----~VY~SnPTW~n 137 (410)
T KOG1412|consen 67 NHEYLPILGL-----PTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKN----TVYVSNPTWEN 137 (410)
T ss_pred cchhccccCc-----hhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccc----eeEecCCchhH
Confidence 3469999994 999999998873223333334554 3566777888877776632 333 89999999999
Q ss_pred hhhhhhhcCCeEe-e---ec-----cCccccc----cC--CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEee
Q 012785 204 YPSITDCVKSRLY-K---WA-----GDAKRFN----KD--GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHD 260 (456)
Q Consensus 204 ~~~~~~~~g~~~~-~---~~-----~d~~~l~----~~--~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~D 260 (456)
...+++.+|..-+ . |. +|.+++. .. +...++..+.|||||...++ +.++.+.+.+.|
T Consensus 138 H~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFD 217 (410)
T KOG1412|consen 138 HHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFD 217 (410)
T ss_pred HHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeee
Confidence 9999999995433 2 22 3444442 22 33334444559999999873 566789999999
Q ss_pred ecCCCCCC-CCC---------CCCCCCcEEEecCccccCCCCceEEEE--EEeCHHHHH----HHHHHHhhccCcCChHH
Q 012785 261 LAYYWPQY-TSI---------TYPADHDLMLFTVSKSTGHAGTRIGWA--LVKDMEVAK----KMTKYIELNTIGVSKDS 324 (456)
Q Consensus 261 e~y~~~~~-~~~---------~~~~~~~i~i~S~SK~~g~~G~RiG~l--~~~~~~~~~----~l~~~~~~~~~~~s~~~ 324 (456)
-+|.+..- .+- .......+++-||+|.||+.+-|+|-+ ++.++..+. +|....+..-.+++...
T Consensus 218 iAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyG 297 (410)
T KOG1412|consen 218 IAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYG 297 (410)
T ss_pred hhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchh
Confidence 99986311 111 122345789999999999999999975 444554444 45555566677888888
Q ss_pred HHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc
Q 012785 325 QLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ 404 (456)
Q Consensus 325 q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~ 404 (456)
..++.++|+..+-.. ++..-++.+-.++++.|..|++.|..++ .+|.+ +++....|+|.+-.+
T Consensus 298 ArIV~kvL~tP~lre-----~W~~sik~MssRI~~MR~aLrd~L~aL~------TPGtW----DHI~~QiGMFSyTGL-- 360 (410)
T KOG1412|consen 298 ARIVHKVLSTPELRE-----QWIQSIKTMSSRIKKMRTALRDHLVALK------TPGTW----DHITQQIGMFSYTGL-- 360 (410)
T ss_pred hHHHHHHhcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCcH----HHHHhhccceeecCC--
Confidence 999999998543321 2344456667778888888888887763 12333 234445556877777
Q ss_pred cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 405 EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
....+..+.+++.|++.+- + ||++++ ...+++...++|.+.+
T Consensus 361 tp~qV~~li~~h~vyLl~~-------G--RInisGLN~~NveyVAkAIde~V 403 (410)
T KOG1412|consen 361 TPAQVDHLIENHKVYLLSD-------G--RINISGLNMKNVEYVAKAIDETV 403 (410)
T ss_pred CHHHHHHHHHhceEEEecC-------C--cEeeeccccccHHHHHHHHHHHH
Confidence 4677888888999999872 2 888887 7777777777776653
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-15 Score=148.76 Aligned_cols=272 Identities=15% Similarity=0.172 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhcCccCCC-ceEEEccCHHHHHHHHHHHh---cCCCCCCCcEEEEeCCCCCChh----hhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITEN-HHIVVGTGSTQLFQAALYAL---SSQDASEPISVVSAAPYYSSYP----SITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~-~~I~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~ 214 (456)
.+.|+.++++++. ++ ++|++++|++++++.++..+ .++|+ +|++..-.|+... ...+..|++
T Consensus 46 ~~~r~~la~~lg~------~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~----~vl~~~~~~~s~~~~~~~~~~~~g~~ 115 (371)
T PF00266_consen 46 EEAREALAKLLGA------PPDEEVVFTSNGTEALNAVASSLLNPLKPGD----EVLVTSNEHPSNRYPWEEIAKRKGAE 115 (371)
T ss_dssp HHHHHHHHHHHTS------STTEEEEEESSHHHHHHHHHHHHHHHGTTTC----EEEEEESSHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhcCC------ccccccccccccchhhhhhhhcccccccccc----ccccccccccccccccccccccchhh
Confidence 5777778888864 44 78999999999999999999 78899 9999998888766 333456888
Q ss_pred EeeeccCc------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 215 LYKWAGDA------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 215 ~~~~~~d~------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
+..++.+. +.++. .++++++++..+|-||...+ ++|+++++++++|-++.-.. .++. ...+-++
T Consensus 116 v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~-~~id~~~~~~D~ 194 (371)
T PF00266_consen 116 VRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGC-VPIDLDELGADF 194 (371)
T ss_dssp EEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTT-SS--TTTTTESE
T ss_pred hccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccc-ccccccccccce
Confidence 87665432 33322 47789999899999999877 37889999999999988432 2332 3345679
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh---------------------ccCcCChHHHHHHHHHHHhhhCC
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL---------------------NTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~---------------------~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
+++|..|.+|.+| +|++++. ++..++++..... .....+.+...++...++.+.
T Consensus 195 ~~~s~~Kl~gp~G--~g~l~v~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~-- 269 (371)
T PF00266_consen 195 LVFSSHKLGGPPG--LGFLYVR-PEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE-- 269 (371)
T ss_dssp EEEESTSTTSSST--EEEEEEE-HHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH--
T ss_pred eeecccccCCCCc--hhhheeh-hhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh--
Confidence 9999999667666 7999997 8888887432110 011344444555556666432
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCC
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNK 417 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~g 417 (456)
+.-+++.+++..+..+.+.+.|++++.+.+..+.... ..+..+-+.++. +.+.+.+.|.++|
T Consensus 270 --------~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~L~~~~ 332 (371)
T PF00266_consen 270 --------EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEP---------RRPSIVSFNLPGSDADDVVKYLEERG 332 (371)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGG---------BGTTEEEEEETTSSHHHHHHHHHHHT
T ss_pred --------ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccc---------cccceEEEeecCCCHHHHHHHHhhcC
Confidence 3346777888889999999999998876664431111 112234445543 5788888999889
Q ss_pred EEeecCCCCCC-------CCCeEEEEecC--ChhHHHHH
Q 012785 418 ILTRSGKHFGF-------SPKYVRISMLD--RDENYNLF 447 (456)
Q Consensus 418 I~v~pg~~fg~-------~~~~iRis~~~--~~e~i~~~ 447 (456)
|.+..|..+.. -.+.||+|+.. ++||++++
T Consensus 333 I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 333 IAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp EEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred EEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 99999876641 24899999875 88898764
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-15 Score=149.19 Aligned_cols=206 Identities=13% Similarity=0.097 Sum_probs=143.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
...|++.+|++.+. +..+++++++.|+.+++.+++++|| +|++....|...... +...|++++.
T Consensus 71 ~~~Le~~lA~l~g~--------~~av~~sSG~aAi~~al~all~~Gd----~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~ 138 (436)
T PRK07812 71 QDVVEQRIAALEGG--------VAALLLASGQAAETFAILNLAGAGD----HIVSSPRLYGGTYNLFHYTLPKLGIEVSF 138 (436)
T ss_pred HHHHHHHHHHHhCC--------CeEEEEccHHHHHHHHHHHHhCCCC----EEEEeCCcchHHHHHHHHHhhcCeEEEEE
Confidence 36888999988863 3466677778899999999999999 999999888775543 3446777776
Q ss_pred ec--cCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccc
Q 012785 218 WA--GDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~--~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~ 287 (456)
++ .|.+.++. .++++|++.+|+||+|.+.+ ++|+++|+++|+|+++..+.. ..+...+-++++.|++|.
T Consensus 139 vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~-~~pl~~GaDivv~S~tK~ 217 (436)
T PRK07812 139 VEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL-IRPLEHGADIVVHSATKY 217 (436)
T ss_pred ECCCCCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CCchhcCCCEEEEecccc
Confidence 64 24444443 46789999999999999977 488999999999998874321 112234567999999999
Q ss_pred cCCCCceEEEEEEeCHH------------------------------HHHHHH-HHHhhccCcCChHHHHHHHHHHHhhh
Q 012785 288 TGHAGTRIGWALVKDME------------------------------VAKKMT-KYIELNTIGVSKDSQLRAAKVLKVVS 336 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~------------------------------~~~~l~-~~~~~~~~~~s~~~q~~a~~~L~~~~ 336 (456)
+|..|--+|++++.... +..+.+ ..........++...+.+..-|+
T Consensus 218 lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~--- 294 (436)
T PRK07812 218 LGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLE--- 294 (436)
T ss_pred cCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcC---
Confidence 98788778887774221 111111 22233455566665555444443
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
.+....++..++...+.+.|++++.+.
T Consensus 295 ------------tL~~R~~~~~~nA~~la~~L~~~p~v~ 321 (436)
T PRK07812 295 ------------TLSLRIERHVANAQRVAEFLEARDEVA 321 (436)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 345556667788888999999987653
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-15 Score=153.15 Aligned_cols=265 Identities=12% Similarity=0.081 Sum_probs=168.9
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeecc----
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWAG---- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~~---- 220 (456)
+.+++++++++|++.+++..... |.....+|+...-+|++....+.... ...++.+.
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRM 185 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccc
Confidence 48999999999999999876431 11011179999999999775544321 11111110
Q ss_pred ---------Cccc---c----c---cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC
Q 012785 221 ---------DAKR---F----N---KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT 272 (456)
Q Consensus 221 ---------d~~~---l----~---~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~ 272 (456)
|.+. + + ..+..++++...+.-.|.+.+ ++|+++|+++|.||++.+.+.++-.
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 265 (451)
T PRK07678 186 PGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKA 265 (451)
T ss_pred cccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchh
Confidence 0111 1 1 124567777554555566654 3899999999999999876554411
Q ss_pred -----CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH------HHhhccCcCChHHHHHHHHHHHhhhCCCC
Q 012785 273 -----YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK------YIELNTIGVSKDSQLRAAKVLKVVSDSCK 340 (456)
Q Consensus 273 -----~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~------~~~~~~~~~s~~~q~~a~~~L~~~~~~~~ 340 (456)
..-..+|+ +++|.+| .| +.+|.++++ +++++.+.. .....|++.++++..++.+.|+.+.+.
T Consensus 266 ~~~~~~gv~PDiv--t~gK~lg-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~-- 339 (451)
T PRK07678 266 FGFMNYGVKPDII--TMAKGIT-SAYLPLSATAVK-KEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENE-- 339 (451)
T ss_pred HHHHhcCCCCCEE--Eeecccc-cCCcceeEEEEc-HHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhC--
Confidence 11123444 6899998 77 799999997 899888763 134578999999999999999976543
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC--------c---cHHHH
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--------Q---EIEDC 409 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--------~---~~~~~ 409 (456)
+.+++.++.-+..++.|.+.+++++.+.-.+..|.+ +-+.+. . ....+
T Consensus 340 -------~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~--------------~~i~~~~~~~~~~~~~~~~a~~i 398 (451)
T PRK07678 340 -------NLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLL--------------VGIELVNDKETKEPADNDKVASV 398 (451)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceE--------------EEEEEecCCcccCcCchHHHHHH
Confidence 334444443344444444445555543334445544 333331 0 13456
Q ss_pred HHHHHhCCEEeecCCCCC-CCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 410 ESFLKGNKILTRSGKHFG-FSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 410 ~~~l~~~gI~v~pg~~fg-~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
...+.++||++.+..... ...+.+|++.. .+++++++++++|.+++
T Consensus 399 ~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l 447 (451)
T PRK07678 399 VAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTAL 447 (451)
T ss_pred HHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 777889999997632111 12478999854 39999999999999876
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-14 Score=143.72 Aligned_cols=205 Identities=12% Similarity=0.080 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
...|++.||++-+ .+..+++++++.|+..++.+++++|| +|+++...|.+....+ +..|+++..
T Consensus 64 ~~~le~~la~LEg--------~~~a~~~~SGmaAi~~~~~~ll~~GD----~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~ 131 (395)
T PRK08114 64 HFSLQEAMCELEG--------GAGCALYPCGAAAVANAILAFVEQGD----HVLMTGTAYEPTQDFCSKILSKLGVTTTW 131 (395)
T ss_pred HHHHHHHHHHHhC--------CCeEEEEhHHHHHHHHHHHHHcCCCC----EEEEeCCCcHHHHHHHHHHHHhcCcEEEE
Confidence 3678888888653 35777888899999999999999999 9999999997776654 556888877
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhc--CcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS--GGILVHDLAYYWPQYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~--~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK 286 (456)
++. |.+.++. .++++|++.+|.||+|.+.+ ++|+++ |+++|+|.++.-+.. --+...+-+++++|.+|
T Consensus 132 vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaDivv~S~tK 210 (395)
T PRK08114 132 FDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGIDISIQAGTK 210 (395)
T ss_pred ECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCcEEEEcCcc
Confidence 653 4555543 36899999999999999987 377887 599999999985422 11234467899999999
Q ss_pred cc-CCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 287 ST-GHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 287 ~~-g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
.+ |++.+-.|.++.. ++..+.++..........+++..+.+...|+ .+.-..++..++...+.
T Consensus 211 yl~Ghsdv~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~---------------TL~lR~~~~~~na~~va 274 (395)
T PRK08114 211 YLVGHSDAMIGTAVAN-ARCWEQLRENSYLMGQMVDADTAYMTSRGLR---------------TLGVRLRQHEESSLKVA 274 (395)
T ss_pred cccCCCcceeEEEEcC-HHHHHHHHHHHHhccCCCCHHHHHHHHcCCC---------------cHHHHHHHHHHHHHHHH
Confidence 77 4445778866664 7777777766665666778777776666554 34455677778888999
Q ss_pred HHHHhcCCcc
Q 012785 366 MAVQKSGLFS 375 (456)
Q Consensus 366 ~~L~~~~~~~ 375 (456)
+.|++++.++
T Consensus 275 ~~L~~hp~V~ 284 (395)
T PRK08114 275 EWLAEHPEVA 284 (395)
T ss_pred HHHHcCCCEe
Confidence 9999987554
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-14 Score=143.12 Aligned_cols=279 Identities=14% Similarity=0.159 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP----SITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~ 217 (456)
..+|++.++++.+. ++.+++++++.|+.+++.++.++|| +|+++.+.|.+.. ..+...|+++..
T Consensus 66 ~~~lE~~la~leg~--------~~av~~sSG~aAi~~al~all~~GD----~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~f 133 (384)
T PRK06434 66 VQAFEEKYAVLENA--------EHALSFSSGMGAITSAILSLIKKGK----RILSISDLYGQTFYFFNKVLKTLGIHVDY 133 (384)
T ss_pred HHHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHHhCCCC----EEEEecCccchHHHHHHHHHHhcCcEEEE
Confidence 36888888888852 4677777778999999999999999 9999988766655 455667888888
Q ss_pred eccCc-cccc--cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccC
Q 012785 218 WAGDA-KRFN--KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTG 289 (456)
Q Consensus 218 ~~~d~-~~l~--~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g 289 (456)
++.|. +.++ ..++++|++..|.|||+.+.+ ++|++++ +++|.++..+ +...+...+-+++++|.+|.++
T Consensus 134 vd~~~~~~~~l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~-~~~~pl~~gaDivv~S~tK~i~ 210 (384)
T PRK06434 134 IDTDRLNSLDFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASP-YNQNPLDLGADVVIHSATKYIS 210 (384)
T ss_pred ECCCChhheeecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCc-ccCCchhcCCCEEEeecccccC
Confidence 77654 3443 346899999999999998866 3788888 4569997533 2222223456899999999996
Q ss_pred CCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012785 290 HAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV 368 (456)
Q Consensus 290 ~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L 368 (456)
-+| .=.|.+++.++++.++++..+.......+++..+.+..-|+ .++...++.+++...+.+.|
T Consensus 211 G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~---------------tL~~R~~r~~~~a~~~a~~L 275 (384)
T PRK06434 211 GHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLK---------------TLGLRMEKHNKNGMELARFL 275 (384)
T ss_pred CCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCC---------------cHHHHHHHHHHHHHHHHHHH
Confidence 444 55677777667888888766544445556554444444333 35556666778888899999
Q ss_pred HhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEE---eecCCC--------------------
Q 012785 369 QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKIL---TRSGKH-------------------- 425 (456)
Q Consensus 369 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~---v~pg~~-------------------- 425 (456)
+.++.+.....+|.- ..++.....+..+-+.+++ .+.+.+.+..-.+. +.-|..
T Consensus 276 ~~~p~v~~V~yPgl~--~~~~~~~g~g~~~sf~l~~-~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~ 352 (384)
T PRK06434 276 RDSKKISNVYYPDTE--IGKKVLRGFGGMLSFELRS-MEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEER 352 (384)
T ss_pred HcCCCccEEECCChH--HHHHhcCCCCceEEEEECC-HHHHHHHHHhCCcceEccCCCCCCeeeECCCccccccCCHHHH
Confidence 998765433222211 1111122223345566653 44444444443332 221211
Q ss_pred --CCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 426 --FGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 --fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.|..++.||||++. |+.+.+++.|.+.|
T Consensus 353 ~~~gi~~~liRlsvGl--Ed~~dLi~dl~~Al 382 (384)
T PRK06434 353 ERLGISDNLVRFSIGI--EDIDDLIKDIENAL 382 (384)
T ss_pred HhcCCCcCeEEEEeCc--CCHHHHHHHHHHHh
Confidence 11235789999854 35566677776665
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=153.41 Aligned_cols=261 Identities=11% Similarity=0.007 Sum_probs=167.2
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeecc----
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWAG---- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~---- 220 (456)
+.+++++++++|++.+++..... |.....+|+...-+|++....+..... ..+.++.
T Consensus 112 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (461)
T PRK07482 112 SKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRR 191 (461)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccc
Confidence 58999999999999999977421 211112899999999997654333211 1111110
Q ss_pred -------------Cccccc----c---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 221 -------------DAKRFN----K---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 221 -------------d~~~l~----~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
+.+.++ . .++.+|++...+.-.|...+ ++|+++|+++|.||++.+.+.++-
T Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~ 271 (461)
T PRK07482 192 ADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS 271 (461)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc
Confidence 112221 1 24567777555655576654 389999999999999997655542
Q ss_pred CC-----CCCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHH-------HhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 272 TY-----PADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKY-------IELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 272 ~~-----~~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.. .-..+|++ ++|.++ .|. .+|.+++. +++.+.+... ....|++.++++..++.+.|+.+.+.
T Consensus 272 ~~a~~~~gv~PDiv~--~gKgl~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~ 347 (461)
T PRK07482 272 MFGSDHYGIEPDLIT--VAKGLT-SAYAPLSGSIVG-EKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERE 347 (461)
T ss_pred hhhHHhcCCCCCEEE--Eccccc-cCccccceeeec-HHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 21 11234544 799998 785 99999996 8888877531 24468899999999999999977653
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-------------c
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------------E 405 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------------~ 405 (456)
+.+++.++.-+..++.|.+.+++++.+.-.+..|.+ +.+.+.. .
T Consensus 348 ---------~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm--------------~giel~~~~~~~~~~~~~~~~ 404 (461)
T PRK07482 348 ---------NLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGML--------------AAVEFVADRDDRTPFDPALKI 404 (461)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeE--------------EEEEeccCCCcCCCCChhhHH
Confidence 344444433333444444444455544444445544 3444421 0
Q ss_pred HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 406 IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 ~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
...+...+.++||+++++. ..+.+|+. +..+++++++++++|.+.+
T Consensus 405 ~~~i~~~~~~~Gvl~~~~~----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l 452 (461)
T PRK07482 405 GPQVSAAALERGVIARAMP----HGDILGFAPPLVLTRAEADEIVAIAKDAV 452 (461)
T ss_pred HHHHHHHHHHCCcEEecCC----CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2456777889999987632 24678886 5459999999999998876
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=150.05 Aligned_cols=254 Identities=11% Similarity=0.128 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-CC-CCCCcEEEEeCCCCCChhhhhhhc--------C
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-QD-ASEPISVVSAAPYYSSYPSITDCV--------K 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~g-d~~~~~Vlv~~P~y~~~~~~~~~~--------g 212 (456)
.+|.+.++++.+ .+++++++++++|++.+++.... .| + +|+..+-+|++....+... +
T Consensus 69 ~~la~~l~~~~~--------~~~v~~~~SGseA~e~Alklar~~~gr~----~Ii~~~~syHG~t~~~ls~~~~~~~~~~ 136 (364)
T PRK04013 69 EEMLEELSKWVN--------YEYVYMGNSGTEAVEAALKFARLYTGRK----EIIAMTNAFHGRTMGALSATWKPKYRED 136 (364)
T ss_pred HHHHHHHHhhcC--------CCEEEEeCchHHHHHHHHHHHHHHhCCC----EEEEECCccccCchhhccCCCCcccccC
Confidence 455566655541 25899999999999999997743 34 4 8999999999976544432 1
Q ss_pred -------CeEeeeccCcccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC
Q 012785 213 -------SRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY 273 (456)
Q Consensus 213 -------~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~ 273 (456)
...++++ |.+.++. .+++++++...+...|...+ ++|+++|+++|+||++.+. .++-..
T Consensus 137 ~~p~~~~~~~~~~~-d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~ 214 (364)
T PRK04013 137 FEPLVPGFKHIPFN-DVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFL 214 (364)
T ss_pred CCCCCCCcEEecCC-CHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchh
Confidence 1111222 3444432 35678888666665555443 3899999999999999865 333211
Q ss_pred -----CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 274 -----PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 274 -----~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
....+ +.+++|.+| .|+.+|.++.. +++. ......|++.++++..++.+.|+.+++. +
T Consensus 215 a~~~~gv~PD--iv~~gK~lg-gG~P~~a~~~~-~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~~---------~ 277 (364)
T PRK04013 215 AIEHYKVEPD--IVTMGKGIG-NGVPVSLTLTN-FDVE----RGKHGSTFGGNPLACKAVAVTLRILRRE---------R 277 (364)
T ss_pred HHHhcCCCCC--EEEeccccc-CCceeEEEEec-cccc----CCCcCCCCCcCHHHHHHHHHHHHHHHhc---------c
Confidence 11223 455799999 79999999986 5542 2335579999999999999999987653 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
.+++.++. +. .+.. +.+.-.+..|. ++-+++......+.+.+.++|+++.+.
T Consensus 278 l~~~~~~~-------l~-~l~~-~~v~~vRG~Gl--------------~~gve~~~~~~~i~~~~~~~Gll~~~~----- 329 (364)
T PRK04013 278 LVEKAGEK-------FI-EIKG-ERVVTTRGRGL--------------MIGIVLKKPVGKYVEELQNRGYLVHTA----- 329 (364)
T ss_pred HHHHHHHH-------HH-Hhcc-CcceeeeeCcE--------------EEEEEeCCcHHHHHHHHHhCCcEEeeC-----
Confidence 34433332 22 2221 22223333443 466666544566778888999999762
Q ss_pred CCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 429 SPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+.+.+|+.-. .+++++++++++|.+.+
T Consensus 330 g~~vlr~~Ppl~it~~~i~~~~~~l~~~l 358 (364)
T PRK04013 330 GQRVIRLLPPLIISKDTMEEAKSAIEGVI 358 (364)
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 2478899843 48999999999999876
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-14 Score=138.65 Aligned_cols=205 Identities=12% Similarity=0.117 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~ 217 (456)
...|+++++.+-+ .++.+.+++++.||..++.++.++|| +|++++..|.+....+.. .|+++..
T Consensus 65 ~~~lE~~~a~LEg--------~~~~~afsSGmaAI~~~~l~ll~~GD----~vl~~~~~YG~t~~~~~~~l~~~gi~~~~ 132 (396)
T COG0626 65 RDALEEALAELEG--------GEDAFAFSSGMAAISTALLALLKAGD----HVLLPDDLYGGTYRLFEKILQKFGVEVTF 132 (396)
T ss_pred HHHHHHHHHHhhC--------CCcEEEecCcHHHHHHHHHHhcCCCC----EEEecCCccchHHHHHHHHHHhcCeEEEE
Confidence 4788888888874 45788888889999999999999999 999999999886665544 5777775
Q ss_pred ecc-Ccccc----ccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcc
Q 012785 218 WAG-DAKRF----NKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 218 ~~~-d~~~l----~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK 286 (456)
++. |.+.. .+.++++|++.+|.|||-.+.+ ++++++|+++|+|+.|..|- ..|+ ..+-+|++.|.+|
T Consensus 133 ~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL--~~GaDIVvhSaTK 210 (396)
T COG0626 133 VDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPL--ELGADIVVHSATK 210 (396)
T ss_pred ECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccChh--hcCCCEEEEeccc
Confidence 553 22222 2247899999999999999876 47888999999999998652 2334 3456899999999
Q ss_pred cc-CCCCceEEEEEEeCHHHHHHHHHHHh-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 287 ST-GHAGTRIGWALVKDMEVAKKMTKYIE-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 287 ~~-g~~G~RiG~l~~~~~~~~~~l~~~~~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
.+ |+..+=.|.++++++++.+.+..... ......+++..+.+..-|+ .+.-..++..++...+
T Consensus 211 yl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk---------------TL~~Rm~~~~~nA~~I 275 (396)
T COG0626 211 YLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR---------------TLALRMERHNENALKI 275 (396)
T ss_pred cccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccc---------------hHHHHHHHHHHHHHHH
Confidence 99 45666677677676777777644443 3667788888877777665 3444566677788899
Q ss_pred HHHHHhcCCcc
Q 012785 365 RMAVQKSGLFS 375 (456)
Q Consensus 365 ~~~L~~~~~~~ 375 (456)
.+.|++++.++
T Consensus 276 A~~L~~~p~V~ 286 (396)
T COG0626 276 AEFLADHPKVK 286 (396)
T ss_pred HHHHhcCCCeE
Confidence 99999987554
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-14 Score=146.26 Aligned_cols=158 Identities=12% Similarity=0.068 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh---------cCCCCCCCcEEEEeCCCCCChhhhhhhcCC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL---------SSQDASEPISVVSAAPYYSSYPSITDCVKS 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l---------~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~ 213 (456)
.+|++++|++++. +++++++|+++++.+++.++ ..+|| +|+++.|+|+.+...+...|+
T Consensus 66 ~~fe~~lA~~~g~--------~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd----~VIv~~~t~~a~~~~v~~~G~ 133 (438)
T PRK15407 66 DAFEKKLAEFLGV--------RYALLVNSGSSANLLAFSALTSPKLGDRALKPGD----EVITVAAGFPTTVNPIIQNGL 133 (438)
T ss_pred HHHHHHHHHHhCC--------CeEEEECCHHHHHHHHHHHHhhccccccCCCCCC----EEEECCCCcHHHHHHHHHcCC
Confidence 7899999999963 47889999999999999876 37888 999999999999999999999
Q ss_pred eEeeeccC-------cccccc---CCCeEEEEcCC-CCCCccc-chHHhhhcCcEEEeeecCCC-CCCCCCCCCCCCcEE
Q 012785 214 RLYKWAGD-------AKRFNK---DGPYIELVTSP-NNPDGSV-RQSVVNRSGGILVHDLAYYW-PQYTSITYPADHDLM 280 (456)
Q Consensus 214 ~~~~~~~d-------~~~l~~---~~~~~i~v~~P-~NPtG~~-~~~l~~~~~~~iI~De~y~~-~~~~~~~~~~~~~i~ 280 (456)
+++.+++| .+.++. .++++|+++++ +||.-.- +-++|+++|+++|+|++|.- ..+.+.....-.++.
T Consensus 134 ~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~ 213 (438)
T PRK15407 134 VPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAHTLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIA 213 (438)
T ss_pred EEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCCCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceE
Confidence 98766554 333332 36788888654 4443210 11489999999999999973 223332111112577
Q ss_pred EecCc--cccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 281 LFTVS--KSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 281 i~S~S--K~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
++||. |.+. .| .-|++++.|+++.++++..+.
T Consensus 214 ~fSf~~~k~~~-~g-eGG~l~t~d~~l~~~~~~~~~ 247 (438)
T PRK15407 214 TLSFYPAHHIT-MG-EGGAVFTNDPLLKKIIESFRD 247 (438)
T ss_pred EEeCCCCCCcc-cc-CceEEEECCHHHHHHHHHHHH
Confidence 77875 5553 33 359999999999888877654
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-14 Score=147.21 Aligned_cols=319 Identities=14% Similarity=0.110 Sum_probs=196.2
Q ss_pred ecCCCCCCCchhHhhhcccccccccCccccccc---cCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHH
Q 012785 99 VDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYF---SDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 99 l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y---~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~ 174 (456)
++.|.|++..++.+.+..... ..+...+.| +..+| ..+++..+++++.. .|.+ ...+..++|+.+
T Consensus 73 ~g~G~~~~~~~p~i~~~~~~~---~~~~~~tpYq~e~~sqG-----~lel~~~~~~~la~l~G~~---~~~l~~~~GA~a 141 (481)
T PRK04366 73 YPLGSCTMKYNPKINEKVARL---PGFAELHPLQPEETVQG-----ALELMYELQEWLKEITGMD---AVTLQPAAGAHG 141 (481)
T ss_pred ecCcccCCCCCHHHHHHHHhC---cchhcCCCCCChhhhhH-----HHHHHHHHHHHHHHHhCCC---ceEEEeCcHHHH
Confidence 677878877777666543321 123333456 34567 47888888888743 4542 346666778777
Q ss_pred HHHHH--HH-HhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---CCCeEEEEcCCCCCC
Q 012785 175 LFQAA--LY-ALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---DGPYIELVTSPNNPD 242 (456)
Q Consensus 175 al~~~--~~-~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~~~~~i~v~~P~NPt 242 (456)
.+..+ ++ .+.++||....+|++++|.|+.+...++..|++++.++.| .+.++. .+++++++++|| ||
T Consensus 142 ~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~t 220 (481)
T PRK04366 142 ELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TL 220 (481)
T ss_pred HHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-Cc
Confidence 66543 22 3345554222289999999999999999999998876653 333432 367889999998 99
Q ss_pred cccc-h-----HHhhhcCcEEEeeecCCCCCCCCC-CCCCCCcEEEecCccccCCC----CceEEEEEEeCHHHHHHHHH
Q 012785 243 GSVR-Q-----SVVNRSGGILVHDLAYYWPQYTSI-TYPADHDLMLFTVSKSTGHA----GTRIGWALVKDMEVAKKMTK 311 (456)
Q Consensus 243 G~~~-~-----~l~~~~~~~iI~De~y~~~~~~~~-~~~~~~~i~i~S~SK~~g~~----G~RiG~l~~~~~~~~~~l~~ 311 (456)
|.+- + ++|+++|+++|+|.++.......+ +...+-+++++|..|.++.| |--+|++.+. +++.+.+..
T Consensus 221 G~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~-~~~~~~lp~ 299 (481)
T PRK04366 221 GLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVK-EELAPFLPV 299 (481)
T ss_pred cccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeeh-hhhHhhCCC
Confidence 9762 2 378889999999999852111111 23345689999999998744 3457888886 666655420
Q ss_pred H------H-------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 312 Y------I-------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 312 ~------~-------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
. . ..-.+..+.+...++...+.. -+ .+-+++..++..++.+++.+.|+++
T Consensus 300 ~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~--~G--------~~Gl~~~a~~~~~~a~~l~~~L~~~- 368 (481)
T PRK04366 300 PVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS--LG--------AEGLREVSEDAVLNANYLKARLKDI- 368 (481)
T ss_pred CeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH--HH--------HHHHHHHHHHHHHHHHHHHHHhHhh-
Confidence 0 0 000011112222333333332 12 3445566666677788888888875
Q ss_pred CccccCCCCcccccccccCCCCCceEEee-----cCc-cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecC--ChhH
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLK-----CEQ-EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLD--RDEN 443 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~-----~~~-~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~--~~e~ 443 (456)
+.+... +.... -..++ .++ +..++.+.|.++||.+. +..|.. ..+.+|++++- ++++
T Consensus 369 -~~~~~~-~~~~~-----------~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~-~~~~p~~~~~~l~is~~e~~t~ed 434 (481)
T PRK04366 369 -YDLPYD-RPCMH-----------EFVLSGKKLKETGVRTLDIAKRLLDYGFHPP-TIYFPLIVPEALMIEPTETESKET 434 (481)
T ss_pred -CcccCC-CCeeE-----------EEEEECccccccCCCHHHHHHHHHHCCccCC-ccccccccCCeEEEcccCCCCHHH
Confidence 222211 11100 02222 222 56789999999999866 233322 36789999863 8899
Q ss_pred HHHHHHHHHhhh
Q 012785 444 YNLFVQRLSKIL 455 (456)
Q Consensus 444 i~~~l~~L~~~l 455 (456)
++.+++.|+++.
T Consensus 435 id~l~~~l~~i~ 446 (481)
T PRK04366 435 LDAFIAAMKQIA 446 (481)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.8e-15 Score=147.81 Aligned_cols=265 Identities=12% Similarity=0.048 Sum_probs=168.6
Q ss_pred CCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeE----eeecc------Cccccc-
Q 012785 162 ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRL----YKWAG------DAKRFN- 226 (456)
Q Consensus 162 ~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~----~~~~~------d~~~l~- 226 (456)
++++|++|+|++++++.++..+.++++.. ..|++....|+.... .++..|+++ +.++. |.+.++
T Consensus 85 ~~~~v~~~~~~t~~l~~~~~~~~~~~~~~-~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~ 163 (406)
T TIGR01814 85 KEDEVVVMNTLTINLHLLLASFYKPTPKR-YKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILD 163 (406)
T ss_pred CCCcEEEeCCchHHHHHHHHHhcCCcCCc-cEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHH
Confidence 46789999999999999999886654311 168888899987332 345568776 33332 333332
Q ss_pred -----cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCcccc-CCCCce
Q 012785 227 -----KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKST-GHAGTR 294 (456)
Q Consensus 227 -----~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~-g~~G~R 294 (456)
..++++++++.++|.||..++ ++|+++|+++++|+++..... ++. ...+-+++++|..|.+ |.||
T Consensus 164 ~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~-~id~~~~gvD~~~~s~hK~l~g~pG-- 240 (406)
T TIGR01814 164 TIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNV-PLDLHDWGVDFACWCTYKYLNAGPG-- 240 (406)
T ss_pred HHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCc-ccccccCCCCEEEEcCccccCCCCC--
Confidence 136789999999999999987 488999999999999885322 232 2345689999999976 4466
Q ss_pred EEEEEEeCHHHHHHHHHHHh-----------------------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 295 IGWALVKDMEVAKKMTKYIE-----------------------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 295 iG~l~~~~~~~~~~l~~~~~-----------------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
.| +++..+. ...+..... .....++.....++.++|+.+.+. -++
T Consensus 241 ~~-l~v~~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~----------g~~ 308 (406)
T TIGR01814 241 AG-AFVHEKH-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQA----------GME 308 (406)
T ss_pred eE-EEEehhh-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhc----------CHH
Confidence 44 4443133 222221100 001123444555555566644221 245
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC
Q 012785 352 FTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG 427 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg 427 (456)
+.+++.++..+++.+.|++. +++.+..+.... ..+..+.+.++.+.+.+.+.|.++||.+..
T Consensus 309 ~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~---------~r~~~v~~~~~~~~~~~~~~L~~~gi~v~~----- 374 (406)
T TIGR01814 309 ALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHA---------QRGCQLSLTHPVPGKAVFQALIKRGVIGDK----- 374 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChh---------hcCCeEEEEecCCHHHHHHHHHHCCEEEec-----
Confidence 67777888888888888764 124443321100 011134444543456788888899998863
Q ss_pred CCCCeEEEEec--C-ChhHHHHHHHHHHhhhC
Q 012785 428 FSPKYVRISML--D-RDENYNLFVQRLSKILS 456 (456)
Q Consensus 428 ~~~~~iRis~~--~-~~e~i~~~l~~L~~~l~ 456 (456)
..++.||+|++ . ++++++.+++.|+++++
T Consensus 375 ~~~~~iRiS~~~~~nt~~did~l~~~l~~~~~ 406 (406)
T TIGR01814 375 REPSVIRVAPVPLYNTFVDVYDAVNVLEEILD 406 (406)
T ss_pred cCCCeEEEechhccCCHHHHHHHHHHHHHHhC
Confidence 12469999983 3 89999999999998864
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-15 Score=149.24 Aligned_cols=258 Identities=12% Similarity=0.046 Sum_probs=165.6
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-C---------------CeEeeecc------
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-K---------------SRLYKWAG------ 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g---------------~~~~~~~~------ 220 (456)
+.++++++++||++.+++.... .|.. +|+...-+|++....+..+ + ...++++.
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 190 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRP---WILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPW 190 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCC---eEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccc
Confidence 5899999999999999987643 2221 7999999999976544332 1 11112220
Q ss_pred ------Ccc--------ccc---------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCC
Q 012785 221 ------DAK--------RFN---------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 221 ------d~~--------~l~---------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~ 268 (456)
|.+ .++ ..+..++++..-+...|.+.+ ++|+++|+++|.||++.+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~Gr 270 (457)
T PRK05639 191 GINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGR 270 (457)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence 111 111 234567777555666676654 389999999999999987544
Q ss_pred CCCC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 269 TSIT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 269 ~~~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
++.. ..-..+|++ |+|.++ .|+.+|.+++. +++++ +.......+++.++++..++.+.|+.+.+.
T Consensus 271 tG~~~a~~~~gv~PDiv~--~gK~l~-gG~pi~av~~~-~~i~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~----- 340 (457)
T PRK05639 271 TGKWFASEWFEVKPDLII--FGKGVA-SGMGLSGVIGR-KELMD-LTSGSALLTPAANPVISAAAEATLEIIEEE----- 340 (457)
T ss_pred CchHHHHHhcCCCCCEEE--echhhc-CCCcceeEEeh-HHHHh-hcCCCcccCCCcCHHHHHHHHHHHHHHHHc-----
Confidence 4321 111334555 899998 89999999996 88887 322223468889999999999999876543
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec--C----c--cHHHHHHHHHh
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC--E----Q--EIEDCESFLKG 415 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~--~----~--~~~~~~~~l~~ 415 (456)
+.+++.++.-+..++.|.+...+.+.+.-.+..|.+ +.+.+ + . ....+.+.+.+
T Consensus 341 ----~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~--------------~gve~~~~~~~~~~~~~~~~~~~~~~ 402 (457)
T PRK05639 341 ----NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLM--------------IGVEIVKENGKPDPELTGKICWRAFE 402 (457)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeE--------------EEEEEecCCCCCCHHHHHHHHHHHHh
Confidence 333444433333333344333334433334455544 33333 1 1 13456777889
Q ss_pred CCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 416 NKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 416 ~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+||.+.+. +...+.+|+.-. .+++++++++++|.+.+
T Consensus 403 ~Gv~~~~~---g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l 441 (457)
T PRK05639 403 LGLILPSY---GMFGNVIRITPPLVITKEIAEKGLEIMERAI 441 (457)
T ss_pred CCeEEeec---CCCCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 99999763 333578999855 49999999999998876
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=153.10 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=165.7
Q ss_pred CceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhc-C--------------CeEeeec----
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCV-K--------------SRLYKWA---- 219 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~-g--------------~~~~~~~---- 219 (456)
.+++++++++++|++.+++..... |.....+|+...-+|++....+... + ...++++
T Consensus 107 ~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (459)
T PRK05965 107 LNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYR 186 (459)
T ss_pred cCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccc
Confidence 358999999999999999876431 2111117999999999986533222 1 1111111
Q ss_pred ----cCc--------cccc----c---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 220 ----GDA--------KRFN----K---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 220 ----~d~--------~~l~----~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
.|. +.++ . .+..++++...+.-.|...+ ++|+++|+++|.||++.+.+.++.
T Consensus 187 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~ 266 (459)
T PRK05965 187 NPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP 266 (459)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch
Confidence 111 1221 1 24567777655666677654 389999999999999997655543
Q ss_pred CCC-----CCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH-------HHhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 272 TYP-----ADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK-------YIELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 272 ~~~-----~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
... -..+|+ +++|.++ .| +++|.++++ +++.+.+.. .....|++.++++..++.+.|+.+++.
T Consensus 267 ~~a~~~~gv~PDiv--~~gKgl~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~ 342 (459)
T PRK05965 267 LFACEAEGVVPDLM--TVAKGLT-SGYVPMGAVLMS-DHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEG 342 (459)
T ss_pred hhhHhhcCCCCCeE--Eechhhc-cCCcceeEEEEc-HHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 211 123444 4799998 89 599999997 899887753 234568899999999999999877553
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh---cCCccccCCCCcccccccccCCCCCceEEeecCc-----------
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK---SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------- 404 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------- 404 (456)
+.++ +.++.-+.+.+.|++ .+.+.-.+..|.+ +-+.+..
T Consensus 343 ---------~l~~----~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~--------------~gie~~~~~~~~~~~~~~ 395 (459)
T PRK05965 343 ---------GLLA----NGQKAGPRFAAGLDALRAHPLVGDVRGRGLL--------------GALELVADKATKTPFDAA 395 (459)
T ss_pred ---------cHHH----HHHHHHHHHHHHHHhhccCCCEEEEeecceE--------------EEEEEeccccccCCCCch
Confidence 2333 334444444444443 3333333444443 3333310
Q ss_pred --cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 405 --EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 --~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
....+...+.++||++++. +.+.+|+. +..+++++++++++|.+.+
T Consensus 396 ~~~~~~i~~~~~~~Gll~~~~-----g~~~i~~~PpL~it~~ei~~~~~~l~~~l 445 (459)
T PRK05965 396 LDPADRIFDRAYANGLVFRAF-----GDGVLGFAPALCCTEGEFDLIFERTRKTL 445 (459)
T ss_pred hHHHHHHHHHHHhCCeEEEec-----CCcEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 1245667788999999862 25678888 4359999999999998876
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=139.78 Aligned_cols=308 Identities=15% Similarity=0.136 Sum_probs=201.4
Q ss_pred hcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
...+.-.+.+|+++|+.... +.++ +..-|+....|..+. ..+|.++++..+.. +-..++++
T Consensus 55 ~f~Gi~tvslGHchP~v~~a--~~kQ-----l~~l~H~t~~~~~~p------i~~~Ae~L~s~~P~------~l~~vfF~ 115 (442)
T KOG1404|consen 55 AFGGIVTVSLGHCHPDVVAA--AVKQ-----LKKLYHTTSGYLNPP------IHDLAEALVSKLPG------DLKVVFFV 115 (442)
T ss_pred hhCCeEEEEcCCCChHHHHH--HHHh-----hhhhEEeeccccCCc------HHHHHHHHHHhCCC------CceEEEEe
Confidence 35666778999999987644 3332 222244333454443 37888888888732 33568999
Q ss_pred cCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-CCeEee----------------------eccC----
Q 012785 170 TGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-KSRLYK----------------------WAGD---- 221 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~~~~----------------------~~~d---- 221 (456)
|+++||.++++..... .|.- .|+.-.-+|++....+..+ |..... |..+
T Consensus 116 nsGsEANelal~mar~Yt~~~---diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e 192 (442)
T KOG1404|consen 116 NSGSEANELALKMARLYTGNL---DIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEE 192 (442)
T ss_pred cCCchHHHHHHHHHHHhcCCc---eEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhh
Confidence 9999999999987643 2221 6888889999877665443 222111 1111
Q ss_pred -c----ccccc-------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 222 -A----KRFNK-------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 222 -~----~~l~~-------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
- +.++. .+..+.+...-+.--|.+-. ++|+++|.+.|.||++.+.++++-. .-..+.+
T Consensus 193 ~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v 272 (442)
T KOG1404|consen 193 ASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGV 272 (442)
T ss_pred hHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCC
Confidence 0 01110 13344455444555565533 3899999999999999987766622 2222344
Q ss_pred E--EecCccccCCCCceEEEEEEeCHHHHHHHHHHH-hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 280 M--LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 280 ~--i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
+ |-|++|.+| .|+.+|.++.. +++++.+.+.. .++|++.+|++..++.++|+.+.+. ++.+.
T Consensus 273 ~PDIvTmAKgiG-nG~Pl~AVvtt-~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee-------------~LqE~ 337 (442)
T KOG1404|consen 273 VPDIVTMAKGIG-NGFPLGAVVTT-PEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEE-------------NLQEN 337 (442)
T ss_pred CccHHHHHhhcc-CCCcceeeecC-HHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHH-------------hHHHH
Confidence 4 889999999 99999999996 99999998886 7889999999999999999976543 23334
Q ss_pred HHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeec---C-c-------cHHHHHHHHHhCCEEee
Q 012785 357 MSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKC---E-Q-------EIEDCESFLKGNKILTR 421 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~---~-~-------~~~~~~~~l~~~gI~v~ 421 (456)
.++...+|.+.|.++ +.+--.+..|.+ +-+++ + + ....+.+.++++|++|-
T Consensus 338 aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm--------------~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg 403 (442)
T KOG1404|consen 338 AAEVGSYLLEKLAALKDKHPIIGDVRGRGLM--------------LGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVG 403 (442)
T ss_pred HHHHHHHHHHHHHHHhhcCCceeecccceeE--------------EEEEEecccCCCCCcchHHHHHHHHHHHHhCeeee
Confidence 444445555555443 333334445543 44443 1 1 23557788999999997
Q ss_pred cCCCCCCCCCeEEEE--ecCChhHHHHHHHHH
Q 012785 422 SGKHFGFSPKYVRIS--MLDRDENYNLFVQRL 451 (456)
Q Consensus 422 pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L 451 (456)
-|..+|. .+||+ ++.++|+++.+++..
T Consensus 404 ~g~i~G~---vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 404 KGGIHGN---VFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred cccccce---EEEecCCeeccHHHHHHHHHHH
Confidence 7766654 89998 445999997666643
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=151.83 Aligned_cols=255 Identities=11% Similarity=0.022 Sum_probs=165.0
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeecc-
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWAG- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~~- 220 (456)
+.+++++++++|++.+++.... ++.. +|+...-+|++....+.... ...++++.
T Consensus 115 ~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~---~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~ 191 (453)
T PRK06943 115 GHAFFASDGASAVEIALKMSFHAWRNRGRGDKR---EFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDA 191 (453)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCC---EEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCc
Confidence 5899999999999999997632 2222 89999999999764333221 11111111
Q ss_pred ---------------Cccccc------cCCCeEEEEcC-CCCCCcccch---------HHhhhcCcEEEeeecCCCCCCC
Q 012785 221 ---------------DAKRFN------KDGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 221 ---------------d~~~l~------~~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
|.+.++ ..+..+|++.. .+.-.|...+ ++|+++|+++|.||++.+.+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRt 271 (453)
T PRK06943 192 RGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRT 271 (453)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCC
Confidence 012222 12456777754 2666677654 3899999999999999976555
Q ss_pred CCCC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH------HhhccCcCChHHHHHHHHHHHhhhC
Q 012785 270 SITY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY------IELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 270 ~~~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~------~~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
+... .-..+|+ +++|.++ .| +++|.++++ +++.+.+... ....|++.++++..++.+.|+.+.+
T Consensus 272 G~~fa~~~~gv~PDiv--t~gKgl~-gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~ 347 (453)
T PRK06943 272 GTFFACEQAGVWPDFL--CLSKGIS-GGYLPLSLVLSR-DAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE 347 (453)
T ss_pred cchhHHHhCCCCCCeE--eeehhhc-cCcccceEEEEc-HHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 4321 1123444 4699999 89 599999997 8888877531 2446888999999999999997755
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC---c----cHHHHH
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE---Q----EIEDCE 410 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~---~----~~~~~~ 410 (456)
. +.+++..+.-+..++.|.+. .+.+.+.-.+..|.+ +-+.+. + ....+.
T Consensus 348 ~---------~l~~~~~~~G~~l~~~L~~l-~~~~~v~~vrG~Gl~--------------~gvel~~~~~~~~~~~~~i~ 403 (453)
T PRK06943 348 D---------DVLARNARKSARLRAALAPL-AAHPQVRHLRQRGTI--------------FAFDVALDGDAARTFSRRFF 403 (453)
T ss_pred c---------CHHHHHHHHHHHHHHHHHHH-hcCCCEEeEeccccE--------------EEEEEccCCCcchHHHHHHH
Confidence 3 33444433333333333332 223333333444443 444442 1 134566
Q ss_pred HHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 411 SFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 411 ~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
..+.++||++.+. .+.+|++ +..+++++++++++|.+.|
T Consensus 404 ~~~~~~Gll~~~~------g~~l~~~Ppl~it~~eid~~~~~l~~al 444 (453)
T PRK06943 404 EAALERELLLRPI------GTTVYLMPPYVLDDDEIAWLAERTRATL 444 (453)
T ss_pred HHHHHCCcEEEec------CCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 7788999999872 2468998 6569999999999998876
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-15 Score=149.23 Aligned_cols=256 Identities=14% Similarity=0.107 Sum_probs=162.5
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeec--
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWA-- 219 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~-- 219 (456)
++++++++++||++.+++.... ++.. +|+...-+|++....+.... ...+..+
T Consensus 105 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~---~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~ 181 (449)
T PRK07481 105 RRVFFSSGGSDSVETALKLARQYWKVRGQPERT---KFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWL 181 (449)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCc---EEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcc
Confidence 5899999999999999997643 2222 79999999999765433321 1111111
Q ss_pred ----c---Ccccc--------c-------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCC
Q 012785 220 ----G---DAKRF--------N-------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 220 ----~---d~~~l--------~-------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~ 268 (456)
. |.+.+ + .+++.+|++...+.-.|...+ ++|+++|+++|.||++.+.+.
T Consensus 182 ~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGR 261 (449)
T PRK07481 182 YRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGR 261 (449)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCc
Confidence 1 22211 1 134567777555655566544 389999999999999997654
Q ss_pred CCCCC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-------HhhccCcCChHHHHHHHHHHHhh
Q 012785 269 TSITY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-------IELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 269 ~~~~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
++... .-..+| .+++|.++ .| +.+|.++++ +++++.+... .+..|++.++++..++.+.|+.+
T Consensus 262 tG~~~a~~~~gv~PDi--v~~gKgl~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l 337 (449)
T PRK07481 262 TGSWFGSRGWGVKPDI--MCLAKGIT-SGYVPLGATMVN-ARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIV 337 (449)
T ss_pred CchhhHhhhcCCCCCE--EEEeeccc-CCCcCceEEEEc-HHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 44211 112233 45799998 78 599999997 8888887532 34468899999999999999876
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-----------
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------- 404 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------- 404 (456)
.+. +.+++.++.-+..++.|.+..++++.+.-.+..|.+ +.+.+..
T Consensus 338 ~~~---------~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm--------------~gi~l~~~~~~~~~~~~~ 394 (449)
T PRK07481 338 VRE---------DLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLM--------------LALDLVADKATREPIDPS 394 (449)
T ss_pred Hhh---------hHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceE--------------EEEEecccccccCCCCch
Confidence 543 233333333333333333332333433334444544 3444310
Q ss_pred --cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 405 --EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 --~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
....+...+.++||++.+. .+.+||+ +..+++++++++++|.+.+
T Consensus 395 ~~~~~~~~~~~~~~Gvl~~~~------g~~i~l~Ppl~it~~eid~~~~~l~~~l 443 (449)
T PRK07481 395 KGYANAVADVARENGVLVRPS------GTKIILSPPLVIQREDVDRIVDALDAGL 443 (449)
T ss_pred hHHHHHHHHHHHhCCeEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 1234667788999999873 2358888 4459999999999998876
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-15 Score=149.44 Aligned_cols=251 Identities=12% Similarity=0.036 Sum_probs=161.3
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-CC---------------eEeeecc------
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-KS---------------RLYKWAG------ 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g~---------------~~~~~~~------ 220 (456)
+.++++++++||++.+++.... .|.. +|+...-+|++....+... +. ..++++.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~---~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRK---YIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPW 192 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCC---eEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccc
Confidence 5899999999999999986643 2321 8999999999987554432 11 1111110
Q ss_pred ---Cc--------cccc---------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 221 ---DA--------KRFN---------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 221 ---d~--------~~l~---------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
|. +.++ ..+..+|++...+.-.|...+ ++|+++|+++|.||++.+...++.
T Consensus 193 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~ 272 (441)
T PRK05769 193 GIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK 272 (441)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc
Confidence 00 1121 124566666544555676655 389999999999999986433331
Q ss_pred C---C--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 272 T---Y--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 272 ~---~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
. . .-..+++ +|||.++ .|+++|+++++ +++.+.+ ......+++.+++++.++.+.|+.+.
T Consensus 273 ~~a~~~~gv~pDiv--t~~K~l~-~G~p~gav~~~-~~i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~---------- 337 (441)
T PRK05769 273 MFAIEHFGVEPDII--TLAKAIA-GGLPLGAVIGR-AELMFLP-PGSHANTFGGNPVAAAAALATLEELE---------- 337 (441)
T ss_pred eehhhccCCCCCEE--EEccccc-CCcccEEEEEe-hhhhhcC-CCCCCCCCCcCHHHHHHHHHHHHHHH----------
Confidence 1 0 1122343 6899999 89999999997 7776533 22344677889999999999998532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHHH
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFLK 414 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l~ 414 (456)
+ ...++++++-+++.+.|+++ +.+.-.+..|.+ +-+.+.. ....+.+.+.
T Consensus 338 -~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~--------------~~i~~~~~~~~~~~~~~~~~~~~~~ 399 (441)
T PRK05769 338 -E---GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLM--------------IGVELVKDRKEPDPKLRDKVLYEAF 399 (441)
T ss_pred -H---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEE--------------EEEEeccCCccccHHHHHHHHHHHH
Confidence 1 34555556666666666543 322222333333 3334411 1345667778
Q ss_pred hCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 415 GNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 415 ~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++||++.+. +.+.+|++... +++++++++++|.+++
T Consensus 400 ~~Gil~~~~-----~~~~lr~~p~l~~t~~~id~~~~~l~~~l 437 (441)
T PRK05769 400 KRGLLLLGA-----GKSAIRIIPPLIITEEEADIGLEILEEAI 437 (441)
T ss_pred hCCcEEecC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999762 24678998654 9999999999998876
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.2e-15 Score=150.50 Aligned_cols=255 Identities=11% Similarity=0.064 Sum_probs=161.9
Q ss_pred ceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhh-cCCe--------------Eeeec-----
Q 012785 164 HHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDC-VKSR--------------LYKWA----- 219 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~-~g~~--------------~~~~~----- 219 (456)
+.+++++++++|++.+++.... .|.....+|+..+-+|++....... .|.. ..+.+
T Consensus 152 ~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~ 231 (504)
T PLN02760 152 GKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRF 231 (504)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCccccc
Confidence 4799999999999999998741 1210011899999999998654432 2211 01110
Q ss_pred ---c------------Cccc-cc---cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 220 ---G------------DAKR-FN---KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 220 ---~------------d~~~-l~---~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
. +.+. +. ..+..+|++..-+.-.|.+.+ ++|+++|+++|.||++.+.+.++.
T Consensus 232 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~ 311 (504)
T PLN02760 232 HLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT 311 (504)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch
Confidence 0 0111 11 123556666555665676655 389999999999999986544432
Q ss_pred CC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-------HhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 272 TY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-------IELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 272 ~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.. .-..+ +.+|+|.+| .| +++|.++++ +++++.+... .+..+++.++++..++.+.|+.+.+.
T Consensus 312 ~~a~e~~gv~PD--ivtlgK~lg-gG~~PigAv~~~-~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~ 387 (504)
T PLN02760 312 MFGCDKYNIKPD--LVSLAKALS-SAYMPIGAVLVS-PEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER 387 (504)
T ss_pred hhHHHhcCCCCc--EEEeccccc-CCccccceEeec-HHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 11 01122 677999998 67 599999996 8998887642 34468899999999999999976543
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh---cCCccccCCCCcccccccccCCCCCceEEeecCc--c--------
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK---SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--E-------- 405 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~-------- 405 (456)
+. .++.+++-+.+.+.|++ .+.+.-.+..|.+ +-+.+.. .
T Consensus 388 ---------~l----~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~--------------~gie~~~~~~~~~~~~~~ 440 (504)
T PLN02760 388 ---------NI----PEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLI--------------LGTEFVDNKSPNDPFPAE 440 (504)
T ss_pred ---------CH----HHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceE--------------EEEEEecCCcccccccch
Confidence 22 33344444444444433 3333223334443 3443311 0
Q ss_pred ---HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 406 ---IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 ---~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
...+.+.+.++||.+.+. .+.+|++ +..+++++++++++|.+++
T Consensus 441 ~~~~~~i~~~~~~~Gvl~~~~------g~~lrl~Ppl~it~eeid~~~~~l~~al 489 (504)
T PLN02760 441 WGVGAYFGAECKKRGMLVRVA------GDNIMMSPPLIITPEEVDELISIYGKAL 489 (504)
T ss_pred hHHHHHHHHHHHhCCcEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 334667788999999872 2568999 4469999999999998876
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-15 Score=149.84 Aligned_cols=255 Identities=11% Similarity=0.049 Sum_probs=163.7
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeeccC---
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWAGD--- 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~~d--- 221 (456)
+.+++++++++|++.+++..... |.....+|+...-+|++....+.... ...++++.+
T Consensus 110 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (445)
T PRK09221 110 DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPE 189 (445)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccc
Confidence 58999999999999999876421 21111179999999998765433221 111111110
Q ss_pred --------------cccc----cc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 222 --------------AKRF----NK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 222 --------------~~~l----~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
.+.+ +. .+..+|++..-+.-.|...+ ++|+++|+++|.||++.+.+.++.
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~ 269 (445)
T PRK09221 190 NAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 269 (445)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch
Confidence 0112 11 24456666555666677655 389999999999999986544332
Q ss_pred CC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH-------HHhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 272 TY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK-------YIELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 272 ~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.. .-..+ +.+++|.++ .| +++|.++++ +++++.+.. .....+++.++++..++.+.|+.+.+.
T Consensus 270 ~~~~~~~gv~PD--i~~~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~ 345 (445)
T PRK09221 270 AFAAERFGVTPD--IITFAKGLT-NGAIPMGAVIAS-DEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE 345 (445)
T ss_pred hhHHHhcCCCCC--EEEeccccc-cCcccceeeEEc-HHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 11 11123 457999998 66 789999996 888887753 123358889999999999999866442
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc---CCccccCCCCcccccccccCCCCCceEEeecCc-------cHHH
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------EIED 408 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~~~~ 408 (456)
...++.++..+++.+.|+++ +.+.-.+..|. +.-+.+.. ....
T Consensus 346 -------------~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl--------------~~~v~~~~~~~~~~~~~~~ 398 (445)
T PRK09221 346 -------------DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGL--------------VAGIELAPRPGAPGARGYE 398 (445)
T ss_pred -------------cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCce--------------EEEEEEecccccccchHHH
Confidence 23455666666677766654 22222223333 23333311 1245
Q ss_pred HHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 409 CESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 409 ~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+.+.+.++||.++++ .+.+|++ +..+++++++++++|++.+
T Consensus 399 ~~~~~~~~Gv~~~~~------~~~lr~~Ppl~~t~~eid~~~~~l~~~l 441 (445)
T PRK09221 399 AFMKCFEKGLLVRYT------GDTIALSPPLIIEKAQIDELVDALGDAL 441 (445)
T ss_pred HHHHHHHCCeEEeec------CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 677888999999863 3579999 4459999999999999876
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.4e-15 Score=149.03 Aligned_cols=256 Identities=13% Similarity=0.031 Sum_probs=161.3
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCC--------------eEeeec---------
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKS--------------RLYKWA--------- 219 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~--------------~~~~~~--------- 219 (456)
+.+++++++++|.+.+++.... .|.. +|+...-+|++....+..... ..+.++
T Consensus 113 ~~v~f~~SGsEAve~AlklAr~~tgr~---~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 189 (451)
T PRK06062 113 SKVFFTNGGADANEHAVRMARLHTGRP---KVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHA 189 (451)
T ss_pred CEEEEcCChHHHHHHHHHHHHHhhCCc---eEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCC
Confidence 5899999999999999987643 2321 899999999998755543311 111111
Q ss_pred -cC-------ccccc-------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---
Q 012785 220 -GD-------AKRFN-------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT--- 272 (456)
Q Consensus 220 -~d-------~~~l~-------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~--- 272 (456)
.| .+.++ ..+..+|++..-+.-.|.+.+ ++|+++|+++|.||++.+.+.++..
T Consensus 190 ~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~ 269 (451)
T PRK06062 190 TTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAI 269 (451)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHH
Confidence 01 11111 123456666544555566654 3899999999999999875444321
Q ss_pred C--CCCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHH--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 273 Y--PADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKY--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 273 ~--~~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
. .-..+ +.+|+|.+| .|. .+|.+++. +++++.+... ....+++.++++..++.+.|+.+.+.
T Consensus 270 ~~~gv~PD--i~t~gK~lg-gG~~Pigav~~~-~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~--------- 336 (451)
T PRK06062 270 EHFGVVPD--LITFAKGVN-SGYVPLGGVAIS-EAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEE--------- 336 (451)
T ss_pred HhcCCCCC--eeeechhhh-cCCcCcEEEEEc-HHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc---------
Confidence 1 11223 557999998 784 99999997 8888887532 24458889999999999999876543
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------------cHHHHH
Q 012785 348 CFFEFTNHQM-STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------------EIEDCE 410 (456)
Q Consensus 348 ~~l~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------------~~~~~~ 410 (456)
+.+++..+.- +..++.|.+..++.+.+.-.+..|.+ +-+.+.. ....+.
T Consensus 337 ~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~--------------~gve~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (451)
T PRK06062 337 GIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVF--------------WALELVADRETREPLAPYGASSAAMAAVK 402 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccE--------------EEEEEcccccccCCCcccchhhHHHHHHH
Confidence 2333322221 12223333333333433233444443 2333210 134577
Q ss_pred HHHHhCCEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 411 SFLKGNKILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 411 ~~l~~~gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
..+.++||++.+. .+.+|++. ..+++++++++++|.+++
T Consensus 403 ~~l~~~Gvl~~~~------~~~lrl~ppl~~t~~eid~~~~~l~~~l 443 (451)
T PRK06062 403 AACKERGLLPFVN------GNRIHVVPPCTVTEDEVREGLAILDAAL 443 (451)
T ss_pred HHHHHCCcEEeec------CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 7888999998751 45789875 349999999999998876
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=147.27 Aligned_cols=265 Identities=14% Similarity=0.100 Sum_probs=166.4
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeecc---C
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWAG---D 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~---d 221 (456)
+++++++++++|++.+++..... |.....+|+...-+|++....+..... ..++.+. +
T Consensus 91 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~ 170 (443)
T PRK07483 91 EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYRE 170 (443)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccc
Confidence 58999999999999999876431 111111799999999998654443211 0111100 1
Q ss_pred c--------------ccccc-------CCCeEEEEcCCCC-CCcccch---------HHhhhcCcEEEeeecCCCCCCCC
Q 012785 222 A--------------KRFNK-------DGPYIELVTSPNN-PDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTS 270 (456)
Q Consensus 222 ~--------------~~l~~-------~~~~~i~v~~P~N-PtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~ 270 (456)
. +.++. ++..+|++..-+. -.|...+ ++|+++|+++|.||++.+.+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG 250 (443)
T PRK07483 171 QRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG 250 (443)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc
Confidence 0 12221 2456676654453 2355443 38999999999999998765544
Q ss_pred CCC-----CCCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHH----HhhccCcCChHHHHHHHHHHHhhhCCCC
Q 012785 271 ITY-----PADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKY----IELNTIGVSKDSQLRAAKVLKVVSDSCK 340 (456)
Q Consensus 271 ~~~-----~~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~----~~~~~~~~s~~~q~~a~~~L~~~~~~~~ 340 (456)
... .-..+ +.+++|.++ .|+ ++|.++++ +++.+.+... .+..|++.++++..++.+.|+.+++.
T Consensus 251 ~~~a~~~~gv~PD--iv~~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~-- 324 (443)
T PRK07483 251 TLFACEEDGVAPD--LVTIAKGLG-AGYQPIGAVLAS-DRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAED-- 324 (443)
T ss_pred HHHHHhhcCCCCC--eeeehhhhc-cCccccEEEEEc-HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc--
Confidence 211 11223 445799998 896 99999997 8888877542 24468999999999999999877553
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-------------cHH
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------------EIE 407 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------------~~~ 407 (456)
+.+++.++.-+..++.|.+.+++++.+.-.+..|.+ +-+.+.. ..+
T Consensus 325 -------~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm--------------~gie~~~~~~~~~~~~~~~~~~~ 383 (443)
T PRK07483 325 -------GLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLF--------------VGVELVADRATKAPFDPALKLHA 383 (443)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccE--------------EEEEEeecccccCCCCchhhHHH
Confidence 333444433333334444444444544344555554 3333310 124
Q ss_pred HHHHHHHhCCEEeecCCC-C-CCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 408 DCESFLKGNKILTRSGKH-F-GFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 408 ~~~~~l~~~gI~v~pg~~-f-g~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
.+.+.+.++||++.+... . +...+.+|+. +..+++++++++++|.+.|
T Consensus 384 ~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l 435 (443)
T PRK07483 384 RIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAI 435 (443)
T ss_pred HHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 567788899999987421 1 2224689987 4459999999999998876
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=148.73 Aligned_cols=258 Identities=10% Similarity=0.027 Sum_probs=161.4
Q ss_pred ceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeecc----
Q 012785 164 HHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWAG---- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~---- 220 (456)
+++++++++++|++.+++.... .+.....+|+...-+|++....+..... ..++++.
T Consensus 110 ~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~ 189 (460)
T PRK06105 110 SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRF 189 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCccccc
Confidence 5899999999999999997531 1110111899999999987754432211 1111110
Q ss_pred ----------------Cccc-cc---cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 221 ----------------DAKR-FN---KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 221 ----------------d~~~-l~---~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
|.+. +. ..+..+|++..-+.-.|...+ ++|+++|+++|.||++.+.+.++-
T Consensus 190 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 190 GLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 0111 11 124567777555665676644 389999999999999986544431
Q ss_pred CC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-------HhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 272 TY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-------IELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 272 ~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.. .-..+ +.+|+|.++ .| +.+|.++++ +++.+.+... .+..|++.++++..++.+.|+.+.+.
T Consensus 270 ~f~~~~~~v~PD--i~~~gK~lg-gG~~P~~av~~~-~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~ 345 (460)
T PRK06105 270 MFGCETFGIKPD--ILVMSKQLS-SSYQPLSAVLMN-EKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEER 345 (460)
T ss_pred hhhHHhcCCCCC--eeeeecccc-cCcccceEEEEc-HHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 10 11123 457999998 67 699999997 8888877542 13468899999999999999977653
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-c------------c
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-Q------------E 405 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-~------------~ 405 (456)
+.+++.++.-+..++.|.+. ++++.+.-.+..|.+ .-+++. + .
T Consensus 346 ---------~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~--------------~gie~~~~~~~~~~~~~~~~~ 401 (460)
T PRK06105 346 ---------DLVGNAAERGARLQARLRAL-ADHPLVGEVRGVGLI--------------AAVELVADKATKTPFEPPGKV 401 (460)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecceE--------------EEEEEecCcccCCCCCchhHH
Confidence 23333333333333333332 334433334444543 333331 0 0
Q ss_pred HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 406 IEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 ~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
...+...+.++||++.+. .+.+|++-. .+++++++++++|.+++
T Consensus 402 a~~i~~~~~~~Gvl~~~~------g~~i~l~Ppl~it~~eid~~~~~l~~~l 447 (460)
T PRK06105 402 GARANAAAHEHGVISRAM------GDTLAFCPPLIITAAQVDEMVDRFGRAL 447 (460)
T ss_pred HHHHHHHHHHCCeEEEec------CCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 245667788999999872 357898844 49999999999998876
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=146.58 Aligned_cols=255 Identities=11% Similarity=0.036 Sum_probs=160.8
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeeccC---
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWAGD--- 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~~d--- 221 (456)
+.++++++++||++.+++..... |.....+|+...-+|++....+.... ...++++.+
T Consensus 107 ~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~ 186 (442)
T PRK13360 107 NHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLAR 186 (442)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhc
Confidence 58999999999999999875421 11001189999999999765432211 111122211
Q ss_pred --------------ccccc-------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 222 --------------AKRFN-------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 222 --------------~~~l~-------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
.+.++ ..+..+|++...+.-.|...+ ++|+++|+++|.||++.+.+.++-
T Consensus 187 ~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~ 266 (442)
T PRK13360 187 NAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 266 (442)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc
Confidence 11221 123456666555665676654 389999999999999976544332
Q ss_pred CC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-------HhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 272 TY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-------IELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 272 ~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.. .-..+| .+|+|.++ .| +++|.++++ +++.+.+... ....+++.++++..++.+.|+.+.+.
T Consensus 267 ~~a~~~~gv~PDi--vt~gK~l~-gG~~P~gav~~~-~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~ 342 (442)
T PRK13360 267 PFAAQYFGVTPDL--LTCAKGLT-NGAIPMGAVFVS-SEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE 342 (442)
T ss_pred chhhhhcCCCCce--eeeeeccc-cCccceEEEEEc-HHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 11 112233 48999998 67 799999996 8888877531 23358888999999999999876543
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc---CCccccCCCCcccccccccCCCCCceEEeecC----c---cHHH
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----Q---EIED 408 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----~---~~~~ 408 (456)
...++.+++.+++.+.|+++ +.+.-.+..|.+ .-+.+. . ....
T Consensus 343 -------------~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~--------------~~~~l~~~~~~~~~~~~~ 395 (442)
T PRK13360 343 -------------GLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLV--------------GAVELAPRDGKPGKRAYE 395 (442)
T ss_pred -------------CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceE--------------EEEEEecCCCCcchhHHH
Confidence 23444555555566666543 222122223332 222221 1 1345
Q ss_pred HHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 409 CESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 409 ~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+...+.++||++.++ .+.+||+ +..+++++++++++|.+.+
T Consensus 396 ~~~~l~~~Gvl~~~~------~~~lr~~Ppl~~t~~eid~~~~~l~~~l 438 (442)
T PRK13360 396 VFLKCFEKGLMIRYT------GDILALSPPLIIEEAQIDELFDILAQAL 438 (442)
T ss_pred HHHHHHHCCcEEEec------CCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 667788999999862 3579999 4459999999999998876
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=144.63 Aligned_cols=256 Identities=11% Similarity=0.066 Sum_probs=164.0
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhc-CC---------------eEeeecc---
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCV-KS---------------RLYKWAG--- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~-g~---------------~~~~~~~--- 220 (456)
+.+++++++++|++.+++..... |.....+|+...-+|++....+... +. ..++.+.
T Consensus 101 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 180 (422)
T PRK05630 101 DHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRG 180 (422)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccC
Confidence 58999999999999999876421 1111117999999999866544332 10 1111110
Q ss_pred -Cc-------ccccc---CCCeEEEEcC-CCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-----CC
Q 012785 221 -DA-------KRFNK---DGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT-----YP 274 (456)
Q Consensus 221 -d~-------~~l~~---~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~-----~~ 274 (456)
+. +.++. .+..++++.. .+.-.|...+ ++|+++|+++|.||++.+.+.++-. ..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~g 260 (422)
T PRK05630 181 SSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAG 260 (422)
T ss_pred CChHHHHHHHHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcC
Confidence 00 11111 2556676654 2666677654 3899999999999999875444321 11
Q ss_pred CCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 275 ADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
-..+|+ +|+|.++ .| ..+|+++++ +++.+.+... ....|++.+++...++.+.|+.+.+.
T Consensus 261 v~PDi~--t~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~--------- 327 (422)
T PRK05630 261 VTPDIM--CVGKALT-GGFMSFAATLCT-DKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETG--------- 327 (422)
T ss_pred CCCCee--eeechhh-cCccccceeecc-HHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhC---------
Confidence 123444 8899987 67 589999997 8888877532 23468899999999999999876543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh---cCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeec
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQK---SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRS 422 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~p 422 (456)
+. +++++++-+.+.+.|+. .+.+.-.+..|. ++-+.+.. ....+...+.++||++.+
T Consensus 328 ~~----~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl--------------~~~ie~~~~~~~~~~~~~~~~~Gl~~~~ 389 (422)
T PRK05630 328 MW----RKQVKRIEAELIAGLSPLAHLPGVADVRVLGA--------------IGVVEMEQPVDMEEATQAAVDHGVWLRP 389 (422)
T ss_pred cH----HHHHHHHHHHHHHHHHHhhcCCCeeeeecccc--------------EEEEEECCcccHHHHHHHHHHCCeEEEe
Confidence 12 22344444444444443 222222333343 45555532 345778888999999987
Q ss_pred CCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 423 GKHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 423 g~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
. .+.+|+.-. .+++++++++++|.+.++
T Consensus 390 ~------g~~l~~~PpL~it~~~i~~~~~~l~~al~ 419 (422)
T PRK05630 390 F------GRLVYVMPPYITTSEQIAQICAALAAAVK 419 (422)
T ss_pred c------CCEEEEECCccCCHHHHHHHHHHHHHHHh
Confidence 2 267888743 599999999999998863
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=147.17 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.+|++++. ++-+++|+|+++++..++.+++.+|| +|+++.|+|......+...|++++.++.
T Consensus 61 i~~~~~~~A~~~ga-------~~~~~~~~Gst~a~~~~l~al~~~gd----~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~ 129 (294)
T cd00615 61 IKEAQELAARAFGA-------KHTFFLVNGTSSSNKAVILAVCGPGD----KILIDRNCHKSVINGLVLSGAVPVYLKPE 129 (294)
T ss_pred HHHHHHHHHHHhCC-------CCEEEEcCcHHHHHHHHHHHcCCCCC----EEEEeCCchHHHHHHHHHCCCEEEEecCc
Confidence 57889999999863 34555699999999999999999999 9999999999999888999988775533
Q ss_pred -----------Ccccccc-----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCC---C-CCC
Q 012785 221 -----------DAKRFNK-----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTS---I-TYP 274 (456)
Q Consensus 221 -----------d~~~l~~-----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~---~-~~~ 274 (456)
|.+.++. .+++++++++| ||+|.+++ ++|+++|+++|+||+|... .+.+ . ...
T Consensus 130 ~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~ 208 (294)
T cd00615 130 RNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM 208 (294)
T ss_pred cCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh
Confidence 3333332 25789999999 79999887 4889999999999999741 1211 1 123
Q ss_pred CCCcEEEecCccccCCCCceEEEEE
Q 012785 275 ADHDLMLFTVSKSTGHAGTRIGWAL 299 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g~~G~RiG~l~ 299 (456)
.+.++++.|++|++ +|+|.|+++
T Consensus 209 ~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 209 AGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred cCCcEEEEchhccc--chHhHHHHH
Confidence 46799999999974 788875543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=145.91 Aligned_cols=258 Identities=12% Similarity=0.122 Sum_probs=162.4
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-CC-------------------eEeeecc-C
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-KS-------------------RLYKWAG-D 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g~-------------------~~~~~~~-d 221 (456)
+.+++++++++|++.+++.... .|.. +|+...-+|++....+... |. .+..++. |
T Consensus 110 ~~v~f~~sGseA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 186 (428)
T PRK12389 110 EKVRFVNSGTEAVMTTIRVARAYTGRT---KIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFND 186 (428)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhhCCC---EEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCC
Confidence 5899999999999999987643 2322 8999999999976544332 11 0111111 3
Q ss_pred cccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---C--CCCCcEEE
Q 012785 222 AKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---Y--PADHDLML 281 (456)
Q Consensus 222 ~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~--~~~~~i~i 281 (456)
.+.++. .+..++++...++-.|.+.+ ++|+++|+++|.||++.+. .+... . .-..+|
T Consensus 187 ~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDi-- 263 (428)
T PRK12389 187 IEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDL-- 263 (428)
T ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCe--
Confidence 333321 24556666555666676654 3899999999999999865 33221 0 112233
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHH---HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTK---YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~---~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
.+|+|.+| .|+.+|.++++ +++++.+.. .....|++.++++..++.+.|+.+.+. +.+++..+.-+
T Consensus 264 vt~gK~lg-gG~Pi~av~~~-~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~---------~l~~~~~~~g~ 332 (428)
T PRK12389 264 TALGKIIG-GGLPIGAYGGR-KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE---------GVYEKLDRLGA 332 (428)
T ss_pred eeechhhc-CCCceeEEeEH-HHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc---------cHHHHHHHHHH
Confidence 58999998 89999999986 899888753 224468899999999999999976543 23333333333
Q ss_pred HHHHHHHHHHHhcCC-ccccCCCCcccccccccCCCCCceEEeec-C----------c--cHHHHHHHHHhCCEEeecCC
Q 012785 359 TRWKQLRMAVQKSGL-FSVPELPSQFCTFLGRAFEPQPAFAWLKC-E----------Q--EIEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~-~~~~~~~g~~~~~~~~~~~~~~~f~~~~~-~----------~--~~~~~~~~l~~~gI~v~pg~ 424 (456)
..++.|.+..++++. ..+.+..| +.. +.+.. + + ....+.+.+.++||.+.+..
T Consensus 333 ~l~~~L~~l~~~~~~~~~v~r~~g-~~g------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 399 (428)
T PRK12389 333 MLEEGILEAAEKHGITITINRLKG-ALT------------VYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK 399 (428)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCc-EEE------------EEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC
Confidence 333333333333442 12223333 311 11111 1 0 13456778889999998842
Q ss_pred CCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 425 HFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 425 ~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.+.+.+++..+++++++++++|.++++
T Consensus 400 -----~~~~~~~l~~t~e~id~~~~~l~~~l~ 426 (428)
T PRK12389 400 -----YEAWFLTTAHTEEDIEETLEAVDRAFA 426 (428)
T ss_pred -----CCCeeecCCCCHHHHHHHHHHHHHHHH
Confidence 233567776799999999999998763
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-14 Score=142.44 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP----SITDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~~ 218 (456)
.+|++.++++.+. ...|++++|. .++.+++.++.++|| +|+++...|.... ..++..|+++..+
T Consensus 72 ~~le~~la~l~g~-------~~~v~fsSG~-~Ai~~al~~ll~~Gd----~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~v 139 (437)
T PRK05613 72 EALENRIASLEGG-------VHAVAFASGQ-AAETAAILNLAGAGD----HIVTSPRLYGGTETLFLVTLNRLGIEVTFV 139 (437)
T ss_pred HHHHHHHHHHhCC-------CeEEEeCCHH-HHHHHHHHHhcCCCC----EEEECCCccHHHHHHHHHHHHhcCeEEEEE
Confidence 6778888888753 3456666666 888888888889999 9999999999874 3446678888776
Q ss_pred c--cCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCccc
Q 012785 219 A--GDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 219 ~--~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~ 287 (456)
+ .|.+.++. .++++|++..|.||+|.+.+ ++|+++|+++|+|.++..+. ..++ ..+-+++++|++|.
T Consensus 140 d~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~--~~GaDivv~S~~K~ 217 (437)
T PRK05613 140 ENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPL--ELGADVVVASLTKF 217 (437)
T ss_pred CCCCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccChH--HhCCCEEEeeccce
Confidence 5 24555543 36788988899999998766 47899999999999986432 2222 23458999999999
Q ss_pred cCCCCceEEEEEEeCHH-----------------------------------HH-HHHHHHHhhccCcCChHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDME-----------------------------------VA-KKMTKYIELNTIGVSKDSQLRAAKV 331 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~-----------------------------------~~-~~l~~~~~~~~~~~s~~~q~~a~~~ 331 (456)
++..|.-+|-+++.+.+ +. +.............+++..+.+..-
T Consensus 218 l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rg 297 (437)
T PRK05613 218 YTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQG 297 (437)
T ss_pred ecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcc
Confidence 98667666665552111 00 1111223334566777776666655
Q ss_pred HHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012785 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
|+ .+.-..++..++...+.+.|++++.+.
T Consensus 298 l~---------------TL~lR~~~~~~nA~~lA~~L~~hp~V~ 326 (437)
T PRK05613 298 LD---------------TLSLRLERHNENAIKVAEFLNNHEKVA 326 (437)
T ss_pred cC---------------cHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 54 344455667788888999999987654
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=146.08 Aligned_cols=258 Identities=14% Similarity=0.090 Sum_probs=161.3
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeecc----
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWAG---- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~---- 220 (456)
+++++++++++|++.+++..... |.....+|+...-+|++....+...+. ..++++.
T Consensus 112 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (456)
T PRK07480 112 NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGE 191 (456)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCccccc
Confidence 58999999999999999876431 211111788889999987643322211 1111110
Q ss_pred ----C--------ccccc----c---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC
Q 012785 221 ----D--------AKRFN----K---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT 272 (456)
Q Consensus 221 ----d--------~~~l~----~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~ 272 (456)
+ .+.++ . .+..+|++...+.-.|...+ ++|+++|+++|.||++.+.+.++..
T Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 271 (456)
T PRK07480 192 GGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW 271 (456)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 0 02221 1 24567777555655666654 3899999999999999875444421
Q ss_pred C-----CCCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHH----HHhhccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 273 Y-----PADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTK----YIELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 273 ~-----~~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~----~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
. .-..+ +.+|+|.++ .|. ++|.++++ +++.+.+.. .....|++.++++..++.+.|+.+.+.
T Consensus 272 ~a~~~~gv~PD--iv~~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~---- 343 (456)
T PRK07480 272 FGSQHFGIKPD--LMTIAKGLT-SGYIPMGAVGVG-DRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDE---- 343 (456)
T ss_pred hhhhhcCCCCC--eeeeehhhc-cCCccceEEEEc-HHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhC----
Confidence 1 11223 456899998 784 99999996 888887732 234468999999999999999977553
Q ss_pred CCcchhHHHHHH-HHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec-Cc--------c----HHH
Q 012785 343 GSEDECFFEFTN-HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC-EQ--------E----IED 408 (456)
Q Consensus 343 ~~~~~~~l~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~-~~--------~----~~~ 408 (456)
+.+++.+ +.-+..++.+.+ +.+++.+.-.+..|.+ +-+.+ ++ + ...
T Consensus 344 -----~l~~~~~~~~g~~l~~~l~~-l~~~~~i~~vrG~Glm--------------~gie~~~~~~~~~~~~~~~~~~~~ 403 (456)
T PRK07480 344 -----GIVERVRDDTGPYLQKRLRE-LADHPLVGEVRGVGLV--------------GAIELVKDKATRERFEAGGGVGTI 403 (456)
T ss_pred -----CHHHHHHHHHHHHHHHHHHH-hhcCCCeeeEEeecce--------------EEEEEeccccccccCcchhhHHHH
Confidence 2333331 222222233333 3344433333444544 33333 11 0 135
Q ss_pred HHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 409 CESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 409 ~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+...+.++||.+.+. .+.+|++-.. +++++++++++|.+.+
T Consensus 404 ~~~~~~~~Gll~~~~------~~~l~~~Ppl~it~~eid~~~~~l~~al 446 (456)
T PRK07480 404 CRDHCFANGLIMRAV------GDRMIISPPLVITHAEIDELVEKARKAL 446 (456)
T ss_pred HHHHHHHCCcEEeec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 666788999999762 3578888554 9999999999998876
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-13 Score=135.07 Aligned_cols=261 Identities=12% Similarity=0.036 Sum_probs=178.0
Q ss_pred CceEEEccC-HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeec----------cCcccccc-C
Q 012785 163 NHHIVVGTG-STQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWA----------GDAKRFNK-D 228 (456)
Q Consensus 163 ~~~I~~t~G-~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~----------~d~~~l~~-~ 228 (456)
..+|++++| +|.++++++..+..+|+ ++++..-+..+ +...++..|. +..+. .|.+.++. .
T Consensus 55 ~~~v~~~~gsgT~a~ea~~~nl~~~~~----~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (349)
T TIGR01364 55 NYEVLFLQGGATGQFAAVPLNLLAEGK----VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEISE 129 (349)
T ss_pred CceEEEEcCCchHHHHHHHHhcCCCCC----eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCCCC
Confidence 357887777 99999999999998888 77776555443 4567777787 44322 12222222 2
Q ss_pred CCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 229 GPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
++++|.++...+.||+..+++++.+++++|+|-+..-.+..--.+..+ ++++|--|.+|.|| +|.++++ +++.++
T Consensus 130 ~~~~v~~th~ETstGv~~~~l~~~~~~l~iVDavss~g~~~id~~~~d--~~~~ssqK~lgP~G--lg~l~~s-~~~~~~ 204 (349)
T TIGR01364 130 DAAYVHYCANETIHGVEFRELPDVKNAPLVADMSSNILSRPIDVSKFG--LIYAGAQKNIGPAG--LTVVIVR-KDLLGR 204 (349)
T ss_pred CCCEEEEcCCCCcccEecceecccCCCeEEEEccccccCccCCHHHcc--EEEEecccccCCCc--eEEEEEC-HHHHhh
Confidence 578888888889999998999999999999999887432221112223 99999999999888 7999996 777765
Q ss_pred HHHH-------H-----hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 012785 309 MTKY-------I-----ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC-FFEFTNHQMSTRWKQLRMAVQKSGLFS 375 (456)
Q Consensus 309 l~~~-------~-----~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~L~~~~~~~ 375 (456)
+... . ......++.....+..++|+.+.+ . -++.+.++.++..+++++.|++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~----------~gG~e~i~~r~~~l~~~l~~~l~~~~gl~ 274 (349)
T TIGR01364 205 ASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKE----------QGGVKAIEKRNQAKAQLLYDTIDNSNGFY 274 (349)
T ss_pred cccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 5221 1 111234556666666777775432 2 277888899999999999999986432
Q ss_pred ccCCCCcccccccccCCCCCceEEeecCcc--HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHH
Q 012785 376 VPELPSQFCTFLGRAFEPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
........ ..+.-+-+.++.. ...+...+.++|+.+.+|.. ..+.+|+|+.. +.|+++.+++.|
T Consensus 275 ~~~~~~~~---------rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~---~~g~vRvS~~~~nt~edid~l~~al 342 (349)
T TIGR01364 275 RNPVDPRN---------RSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHR---SVGGMRASIYNAMPLEGVQALVDFM 342 (349)
T ss_pred ccCCCHHH---------cCCeEEEEecCChhHhHHHHHHHHHCCCcccCCcc---ccCeeEEECcCCCCHHHHHHHHHHH
Confidence 22111000 0111233344422 25565678889998888765 24689999865 799999999999
Q ss_pred Hhhh
Q 012785 452 SKIL 455 (456)
Q Consensus 452 ~~~l 455 (456)
++++
T Consensus 343 ~~~~ 346 (349)
T TIGR01364 343 KEFQ 346 (349)
T ss_pred HHHH
Confidence 9876
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-14 Score=144.17 Aligned_cols=257 Identities=14% Similarity=0.109 Sum_probs=162.5
Q ss_pred eEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeecc--------
Q 012785 165 HIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWAG-------- 220 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~~-------- 220 (456)
.++++++++||.+.+++.... .|.. +|+...-+|++....+.... ...++++-
T Consensus 123 ~~f~~~SGsEAve~AlklAr~~tgr~---~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (459)
T PRK06931 123 LQFTGPSGADAVEAAIKLAKTYTGRS---NVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGI 199 (459)
T ss_pred EEEeCCCcHHHHHHHHHHHHHhcCCC---eEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccC
Confidence 346668889999999987643 2322 89999999999886665431 11122210
Q ss_pred ----Ccccc--------cc-----CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCC
Q 012785 221 ----DAKRF--------NK-----DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYP 274 (456)
Q Consensus 221 ----d~~~l--------~~-----~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~ 274 (456)
+.+.+ +. .+..++++...+.-.|.+.+ ++|+++|+++|.||++.+.+.++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a 279 (459)
T PRK06931 200 GGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFA 279 (459)
T ss_pred CchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHH
Confidence 01111 10 13566766544555566554 389999999999999997655442211
Q ss_pred -----CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 275 -----ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 275 -----~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
-..+ +.+++|.++ .|+++|.++.. +++ +.+.......|++.++++..++.+.|+.+.+. +.
T Consensus 280 ~~~~gv~PD--ivt~gK~l~-gG~Pi~av~~~-~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~---------~l 345 (459)
T PRK06931 280 FEHAGIEPD--IIVMSKAVG-GGLPLAVLGIK-KEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEE---------NL 345 (459)
T ss_pred hhhcCCCCC--EEEeccccc-CCcceeeeeeH-HHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhC---------CH
Confidence 1223 345799999 89999988875 553 55544445578999999999999999877553 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-c---------------cHHHHHHHH
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-Q---------------EIEDCESFL 413 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-~---------------~~~~~~~~l 413 (456)
+++.++.-+..++.|.+..++++.+.-.+..|.+ +.+.+. + ....+...+
T Consensus 346 ~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm--------------~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (459)
T PRK06931 346 AQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLM--------------IGIEIVDERQPADAMGSYPADGELAAAIQKAC 411 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceE--------------EEEEEccCcccccccccCCccHHHHHHHHHHH
Confidence 4444444444444444444445544444555554 333331 0 123466677
Q ss_pred HhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 414 KGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 414 ~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.++||++.++.. ..+.+|+..+ .+++++++++++|.+.+
T Consensus 412 ~~~Gvl~~~~~~---~~~~l~~~Ppl~it~~eid~~~~~l~~~l 452 (459)
T PRK06931 412 FENGLLLERGGR---NGNVVRLLPPLLITQAECEEFIDRFEQAL 452 (459)
T ss_pred HHCCcEEeecCC---CCCEEEEECCCCcCHHHHHHHHHHHHHHH
Confidence 899999987432 2467887644 49999999999998876
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-14 Score=144.00 Aligned_cols=253 Identities=11% Similarity=0.077 Sum_probs=162.7
Q ss_pred ceEEEccCHHHHHHHHHHHhcC------CCCCCCcEEEEeCCCCCChhhhhhhc-CC---------------eEeeec--
Q 012785 164 HHIVVGTGSTQLFQAALYALSS------QDASEPISVVSAAPYYSSYPSITDCV-KS---------------RLYKWA-- 219 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~------~gd~~~~~Vlv~~P~y~~~~~~~~~~-g~---------------~~~~~~-- 219 (456)
+.++++++++||++.+++.... .+.. +|+...-+|++....+... +. ..++.+
T Consensus 104 ~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~---kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (428)
T PRK07986 104 ECVFLADSGSVAVEVAMKMALQYWQAKGEPRQ---RFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQS 180 (428)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCc---EEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCc
Confidence 5899999999999999987643 2222 8999999999866443332 11 011111
Q ss_pred --------cCcccccc------CCCeEEEEcC-CCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---
Q 012785 220 --------GDAKRFNK------DGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT--- 272 (456)
Q Consensus 220 --------~d~~~l~~------~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~--- 272 (456)
.|.+.++. .+..+|++.. .+.-.|...+ ++|+++|+++|.||++.+.+.++-.
T Consensus 181 ~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~ 260 (428)
T PRK07986 181 RFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFAC 260 (428)
T ss_pred ccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeee
Confidence 01122211 2345666644 2544455432 3899999999999999865443321
Q ss_pred C--CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-----HhhccCcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 273 Y--PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-----IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 273 ~--~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-----~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
. .-..+|+ +|+|.++ .| +.+|.++++ +++.+.+... ....+++.++++..++.+.|+.+.+.
T Consensus 261 ~~~gv~PDi~--t~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~------ 330 (428)
T PRK07986 261 EHAGIAPDIL--CLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESG------ 330 (428)
T ss_pred cccCCCCCEE--Eechhhh-CCcccCcchhch-HHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC------
Confidence 1 1123444 5999998 88 599999996 8898888652 23467889999999999999876543
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhc---CCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEE
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKIL 419 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~ 419 (456)
+ .+++.+++-+++.+.|+++ +.+.-.+..|. ++-+.+.. ....+.+.+.++||.
T Consensus 331 ---~----~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl--------------~~~ve~~~~~~~~~~~~~l~~~Gl~ 389 (428)
T PRK07986 331 ---D----WQQQVAAIEAQLREELAPLRDAPMVADVRVLGA--------------IGVVETTRPVNMAALQRFFVEQGVW 389 (428)
T ss_pred ---C----HHHHHHHHHHHHHHHHHHHhcCCCEEeEeccce--------------EEEEEeCCcccHHHHHHHHHHCCcE
Confidence 2 2344444445555555443 32222233333 34444432 345678888999999
Q ss_pred eecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l~ 456 (456)
+.+. .+.+|+. +..+++++++++++|.+.++
T Consensus 390 ~~~~------g~~i~~~Ppl~it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 390 IRPF------GKLIYLMPPYIILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred EEec------CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 9873 2578995 55699999999999998763
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=141.40 Aligned_cols=259 Identities=10% Similarity=0.024 Sum_probs=160.8
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhc-CC-------------eEeeecc-----
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCV-KS-------------RLYKWAG----- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~-g~-------------~~~~~~~----- 220 (456)
+.+++++++++|++.+++....- |......|+...-+|++........ |. ..++++.
T Consensus 116 ~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~ 195 (460)
T PRK12403 116 SHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANG 195 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccc
Confidence 58999999999999999987521 2111115666677899875543322 11 1111110
Q ss_pred -C----------cccc----cc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC
Q 012785 221 -D----------AKRF----NK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY 273 (456)
Q Consensus 221 -d----------~~~l----~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~ 273 (456)
+ .+.+ .. .+..+|++..-+.-.|.+.+ ++|+++|+++|.||++.+.+.++...
T Consensus 196 ~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 196 GELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 0 1112 11 23456666544555566544 38999999999999998654444211
Q ss_pred -----CCCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHH----HhhccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 274 -----PADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKY----IELNTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 274 -----~~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~----~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
.-..+|+ +|+|.+| .|. .+|.++++ +++.+.+... ....|++.++++..++.+.|+.+.+.
T Consensus 276 a~e~~gv~PDiv--~~gK~lg-gG~~Piga~v~~-~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~----- 346 (460)
T PRK12403 276 AHEHFGFEPDTL--SIAKGLT-SGYVPMGGLVLS-KRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDE----- 346 (460)
T ss_pred hhhhcCCCCCeE--EEccccc-ccccceEEEEEC-HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc-----
Confidence 1123455 4999998 785 99999996 8888877531 23468889999999999999876543
Q ss_pred CcchhHHHHHH-HHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--------c-----HHHH
Q 012785 344 SEDECFFEFTN-HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------E-----IEDC 409 (456)
Q Consensus 344 ~~~~~~l~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~-----~~~~ 409 (456)
..+++.+ +.-+..++.|.+..++++.+.-.+..|.+ +.+.+.. . ...+
T Consensus 347 ----~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~--------------~gie~~~~~~~~~~~~~~~~~~~~~ 408 (460)
T PRK12403 347 ----GVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLV--------------AALQFAEDKATRKRFANENDLAWRC 408 (460)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceE--------------EEEEEccCccccccccchhHHHHHH
Confidence 2344443 33333344444444455544445555654 3333311 0 1224
Q ss_pred HHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 410 ESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 410 ~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
...+.++||.+.+. .+.+|++-.. +++++++++++|.++|
T Consensus 409 ~~~~~~~Gll~~~~------~~~~~l~Ppl~it~~eid~~~~~l~~al 450 (460)
T PRK12403 409 RTIGFEEGVIIRST------LGRMIMAPALVAGRAEIDELVDKTRIAV 450 (460)
T ss_pred HHHHHhCCEEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45667899999862 2457887543 9999999999998876
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.5e-14 Score=141.53 Aligned_cols=258 Identities=13% Similarity=0.039 Sum_probs=160.6
Q ss_pred CceEEEccCHHHHHHHHHHHhcCC-CCCCCcEEEEeCCCCCChhhhhhh--c-----------CC--------eEeeecc
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQ-DASEPISVVSAAPYYSSYPSITDC--V-----------KS--------RLYKWAG 220 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~-gd~~~~~Vlv~~P~y~~~~~~~~~--~-----------g~--------~~~~~~~ 220 (456)
.+.+.++++++||...+++..... |.. +|+...-+|++....+.. . |. ..++|+
T Consensus 130 ~~~v~F~nSGtEA~e~AlrlAR~~TGr~---~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n- 205 (453)
T PRK07046 130 LPYWQVATTATDANRFVLRWARAVTGRP---KILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFN- 205 (453)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHhhCCC---EEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCC-
Confidence 368999999999999999876432 322 899989999997422211 0 10 011121
Q ss_pred Ccccccc----CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCC---CCCCCCCCCCCCCcEEEecC
Q 012785 221 DAKRFNK----DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYY---WPQYTSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d~~~l~~----~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~---~~~~~~~~~~~~~~i~i~S~ 284 (456)
|.+.++. .+..+|++..-+.-.|.+.+ ++|+++|+++|.||++. +.+...-...-..+|+ +|
T Consensus 206 d~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~--t~ 283 (453)
T PRK07046 206 DLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFL--VV 283 (453)
T ss_pred CHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCccce--ee
Confidence 4444432 34566666544544565544 38999999999999986 2221110011123444 58
Q ss_pred ccccCCCCceEEEEEEeCHHHHHHHHHH---------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 285 SKSTGHAGTRIGWALVKDMEVAKKMTKY---------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~~~~l~~~---------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
+|.+| .|+.+|.++++ +++++.+... ....|++.++++..++.+.|+.+.+. +.+++..+
T Consensus 284 gK~lg-gG~Pi~av~g~-~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~---------~~~~~~~~ 352 (453)
T PRK07046 284 GKPIA-GGVPCAVYGFS-AELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTE---------AAYAHMLA 352 (453)
T ss_pred hhhhc-CCCcceeeeeh-HHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcc---------cHHHHHHH
Confidence 99999 89999999997 8898887642 12348889999999999999876543 34444444
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-c----------c---HHHHHHHHHhCCEEee
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-Q----------E---IEDCESFLKGNKILTR 421 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-~----------~---~~~~~~~l~~~gI~v~ 421 (456)
.-+..++.|.+.+++.+........|.+.. +.+.-+ . + ...+...+.++||.+.
T Consensus 353 ~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~ 420 (453)
T PRK07046 353 LAARLAAGLRAVIARHGLPWHVTRVGARVE------------FQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLIT 420 (453)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeCcEEE------------EEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEe
Confidence 444444555555555442222223333311 111100 0 1 2345566778999998
Q ss_pred cCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 422 SGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 422 pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|. .+.++++...++++++++++++.+.+
T Consensus 421 ~~------~~~~~~~p~~t~~did~~~~~~~~~l 448 (453)
T PRK07046 421 PF------HNMMLVCPATTAADVDRLVAAFDACL 448 (453)
T ss_pred cc------cCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 72 24578887679999999999998876
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-14 Score=144.86 Aligned_cols=255 Identities=11% Similarity=0.098 Sum_probs=161.7
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeeccC---
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWAGD--- 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~d--- 221 (456)
+.+++++++++|++.+++..... |.+...+|+...-+|++....+..... ..++.+..
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (466)
T PRK07036 113 NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRR 192 (466)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccccc
Confidence 58999999999999999875321 210011899999999997755433211 11111100
Q ss_pred -------------cc----ccc---cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC
Q 012785 222 -------------AK----RFN---KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT 272 (456)
Q Consensus 222 -------------~~----~l~---~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~ 272 (456)
.+ .+. ..+..+|++...+.-.|...+ ++|++||+++|.||++.+.+.++-.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 272 (466)
T PRK07036 193 PAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHF 272 (466)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchh
Confidence 00 111 124567777655666677655 3899999999999999875544311
Q ss_pred C------CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH-------HHhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 273 Y------PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK-------YIELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 273 ~------~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
. .-..+ +.+++|.++ .| +.+|.++++ +++.+.+.. ..+..|++.++++..++.+.|+.+.+.
T Consensus 273 ~~~~~~~gv~PD--ivt~gK~l~-gG~~Pi~av~~~-~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~ 348 (466)
T PRK07036 273 FASEAVFGIQPD--IITFAKGLT-SGYQPLGAVIIS-ERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMERE 348 (466)
T ss_pred hhhhhhcCCCCC--EEEEccccc-cCccccEEEEEc-HHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 1 11223 446899998 88 599999996 899888753 233458889999999999999877543
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHH---hcCCccccCCCCcccccccccCCCCCceEEeecCc-----------
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQ---KSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------- 404 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~---~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------- 404 (456)
+. .++.++..+.+.+.|+ +++.+.-.+..|.+ +.+.+..
T Consensus 349 ---------~l----~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~--------------~~ve~~~~~~~~~~~~~~ 401 (466)
T PRK07036 349 ---------GL----CEHVREVGPYFEERLASLRELPLVGDVRGDHLM--------------ACVECVADKGSKALLPED 401 (466)
T ss_pred ---------CH----HHHHHHHHHHHHHHHHHhccCCCEEEEEeeceE--------------EEEEEccCccccCCCCch
Confidence 22 3333344444444443 33433333444443 4444411
Q ss_pred --cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 405 --EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 --~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
....+...+.++||++.+. .+.+|++ +..+++++++++++|.+.+
T Consensus 402 ~~~~~~~~~~~~~~Gvl~~~~------~~~~~l~Ppl~it~~~id~~~~~l~~al 450 (466)
T PRK07036 402 IAIGQRIDRHCQERGLLVRPL------EHLCVLSPPLIITRAQIDEIVAILRAAI 450 (466)
T ss_pred hHHHHHHHHHHHHCCcEEeec------CCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 1235667788999999872 2567888 4459999999999998775
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=145.67 Aligned_cols=253 Identities=12% Similarity=0.032 Sum_probs=162.6
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcCCe---------------Eeeecc-
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVKSR---------------LYKWAG- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~---------------~~~~~~- 220 (456)
+.+++++++++|.+.+++.... ++.. +|+...-+|++....+...+.. .++++.
T Consensus 108 ~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~---~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~ 184 (466)
T PRK07030 108 SRCFYADNGSSAIEVALKMSFHYWRNRGKPRKK---RFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDC 184 (466)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCc---EEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCc
Confidence 5899999999999999987632 2222 7999999999977554433211 111110
Q ss_pred ---------------Cccccc------cCCCeEEEEcC-CCCCCcccch---------HHhhhcCcEEEeeecCCCCCCC
Q 012785 221 ---------------DAKRFN------KDGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 221 ---------------d~~~l~------~~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
+.+.++ ..+..++++.. .+.-.|...+ ++|+++|+++|.||++.+.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRt 264 (466)
T PRK07030 185 YLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRT 264 (466)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcc
Confidence 011111 12456666644 2555566544 3899999999999999876554
Q ss_pred CCCC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH-------HHhhccCcCChHHHHHHHHHHHhhh
Q 012785 270 SITY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK-------YIELNTIGVSKDSQLRAAKVLKVVS 336 (456)
Q Consensus 270 ~~~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~a~~~L~~~~ 336 (456)
+... .-..+|+ +|+|.++ .| +++|.++++ +++.+.+.. .....|++.++++..++.+.|+.+.
T Consensus 265 G~~~a~~~~gv~PDiv--~~gKgl~-gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~ 340 (466)
T PRK07030 265 GTMFACEQAGIRPDFL--CLSKALT-GGYLPLAAVLTT-DTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFE 340 (466)
T ss_pred ccchHHHhcCCCCCEE--eeehhcc-CCcccceEEEec-HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 4221 1123444 4699998 89 599999996 899887752 2345688999999999999999775
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh---cCCccccCCCCcccccccccCCCCCceEEeecCc---------
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK---SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------- 404 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------- 404 (456)
+. +.+++ .++.-+++.+.|++ .+.+.-.+..|.+ +-+.+..
T Consensus 341 ~~---------~l~~~----~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~--------------~gie~~~~~~~~~~~~ 393 (466)
T PRK07030 341 QD---------NVIEN----NRALARRMAEATAHLADHPHVAEVRQTGMI--------------LAIEMVQDKASKTPYP 393 (466)
T ss_pred hc---------CHHHH----HHHHHHHHHHHHHHHhcCCCEEEeEeceeE--------------EEEEeccCccccccCc
Confidence 53 23333 33344444444433 3333333444443 3343311
Q ss_pred -c---HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhhC
Q 012785 405 -E---IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 405 -~---~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l~ 456 (456)
+ ...+.+.+.++||++.+. .+.+|+. +..+++++++++++|.+.++
T Consensus 394 ~~~~~~~~i~~~~~~~Gvl~~~~------g~~i~~~Ppl~it~~eid~~~~~l~~al~ 445 (466)
T PRK07030 394 WQERRGLKVYQHALERGALLRPL------GSVVYFLPPYVITPEQIDFLAEVASEGID 445 (466)
T ss_pred chhHHHHHHHHHHHHCCeEEEec------CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 0 135667788999999872 2568886 44599999999999998763
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=140.99 Aligned_cols=256 Identities=14% Similarity=0.053 Sum_probs=158.6
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcC-Ce--------------Eeeec------c-
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVK-SR--------------LYKWA------G- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g-~~--------------~~~~~------~- 220 (456)
+.++++++++++++.+++.... .|.. +|+...-+|++....+...+ .. .++.+ .
T Consensus 131 ~~v~f~~sGseAve~AlklAr~~tgr~---~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (459)
T PRK06082 131 NRVLFAPGGTSAIGMALKLARHITGNF---KVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFP 207 (459)
T ss_pred CEEEECCCcHHHHHHHHHHHHHhcCCC---EEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccC
Confidence 5899999999999999987643 2211 89999999998764333222 11 11100 0
Q ss_pred Cc--------cccc----c-CCCeEEEEcCCCCCCcccc-h--------HHhhhcCcEEEeeecCCCCCCCCCCC-----
Q 012785 221 DA--------KRFN----K-DGPYIELVTSPNNPDGSVR-Q--------SVVNRSGGILVHDLAYYWPQYTSITY----- 273 (456)
Q Consensus 221 d~--------~~l~----~-~~~~~i~v~~P~NPtG~~~-~--------~l~~~~~~~iI~De~y~~~~~~~~~~----- 273 (456)
+. +.++ . .+..+|++...++- |..+ + ++|+++|+++|.||++.+.+.++...
T Consensus 208 ~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~ 286 (459)
T PRK06082 208 DADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286 (459)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhh
Confidence 11 1121 1 24456666544554 4433 3 38999999999999998755444221
Q ss_pred CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 274 PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
.-..+|+ +|+|.+| .| +.+|.++++ +++.+.+.......+++.++++..++.+.|+.+.+. +.+++
T Consensus 287 gv~PDiv--~~gKgl~-gG~~P~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~---------~l~~~ 353 (459)
T PRK06082 287 GIEPDIL--CIGKGLG-GGLVPIAAMITK-DKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQE---------GLLEK 353 (459)
T ss_pred CCCCCEE--Eeccccc-CCCCcceEEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---------CHHHH
Confidence 1123444 4899999 77 599999996 776644321111258899999999999999876543 23333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEEeec
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKILTRS 422 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~v~p 422 (456)
..+.-+..++.|.+..++++.+.-.+..|.+ +.+.+.. ....+...+.++||.+.+
T Consensus 354 ~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~--------------~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~ 419 (459)
T PRK06082 354 VKADSQFMRERLLEMKAKYPLIGDVRGIGLL--------------WGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKV 419 (459)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeeeeeeccce--------------eEEEEccCccccCccHHHHHHHHHHHHhCCCEEEe
Confidence 3333333333344333334433334455554 3344321 123466677899999987
Q ss_pred CCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 423 GKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 423 g~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
. ..+.+|++ +..++++++++++++.+.+
T Consensus 420 ~-----~~~~i~~~Ppl~it~~eid~~~~~l~~~l 449 (459)
T PRK06082 420 S-----QGNVIQLSPPLIITREELTQALAILEEAI 449 (459)
T ss_pred c-----CCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 2 25789998 4459999999999998876
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-13 Score=130.56 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhc----CCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCV----KSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~----g~~~~~ 217 (456)
...|.+.++...+. .+.++++.+..|+..++..|++.|+ +|+.....|.+...+++.. |++...
T Consensus 79 ~~~le~~iaal~ga--------~~~l~fsSGmaA~~~al~~L~~~g~----~iV~~~~~Y~gT~~~l~~~~~~~gie~~~ 146 (409)
T KOG0053|consen 79 RDVLESGIAALEGA--------AHALLFSSGMAAITVALLHLLPAGD----HIVATGDVYGGTLRILRKFLPKFGGEGDF 146 (409)
T ss_pred hHHHHHHHHHHhCC--------ceEEEecccHHHHHHHHHHhcCCCC----cEEEeCCCcccHHHHHHHHHHHhCceeee
Confidence 46788888887753 4688888888999999999999999 9999999999988777664 555555
Q ss_pred eccC-cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCccc
Q 012785 218 WAGD-AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~d-~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~ 287 (456)
+++| .+.++. .++++|++.+|.||+..+.+ ++|+++|+++|+|+.+..+- ..++ ..+-+|++.|.+|.
T Consensus 147 vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL--~lGADIV~hSaTKy 224 (409)
T KOG0053|consen 147 VDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPL--PLGADIVVHSATKY 224 (409)
T ss_pred echhhHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChh--hcCCCEEEEeeeee
Confidence 5432 233332 36899999999999999966 58999999999999998752 2233 34568999999999
Q ss_pred c-CCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 T-GHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~-g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
+ |+..+=.|.++.+.+++..+++..+....++.+++......+-|+. +.-..++..++...+.+
T Consensus 225 i~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt---------------l~lRi~~~~ena~~~A~ 289 (409)
T KOG0053|consen 225 IGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKT---------------LHLRINKHSENALKIAL 289 (409)
T ss_pred ecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcch---------------hhhhHHHHHHHHHHHHH
Confidence 9 4666667777775699999999998888888898877776665552 11223344455555667
Q ss_pred HHHhcCCcc
Q 012785 367 AVQKSGLFS 375 (456)
Q Consensus 367 ~L~~~~~~~ 375 (456)
.|+..+.++
T Consensus 290 ~Le~~~~v~ 298 (409)
T KOG0053|consen 290 LLEAHPKVK 298 (409)
T ss_pred HhhhCCcee
Confidence 777765544
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=137.57 Aligned_cols=279 Identities=14% Similarity=0.077 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccC-HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTG-STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD 221 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G-~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 221 (456)
.+.|+.++++++. .++++|++|+| +|++++.++..+..+++. .-+++..|........++..|.++..++.+
T Consensus 47 ~~~r~~l~~l~~~-----~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~--~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~ 119 (355)
T cd00611 47 NEAESDLRELLNI-----PDNYKVLFLQGGATGQFAAVPLNLLGDKGT--ADYVVTGAWSAKAAKEAKRYGGVVVIVAAK 119 (355)
T ss_pred HHHHHHHHHHhCC-----CCCceEEEEcCCchHHHHHHHHhcCCCCCe--EEEEECCHHHHHHHHHHHhcCCCcEEEecc
Confidence 4667777777752 13568999988 999999999999873330 023333444344444778888877655543
Q ss_pred cc----c-------cccCCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccC
Q 012785 222 AK----R-------FNKDGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTG 289 (456)
Q Consensus 222 ~~----~-------l~~~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g 289 (456)
.+ . ....++++|.++...|.||..++++++.+|+++++|-+..-.+. ++. ...+ +.+.|-.|.+|
T Consensus 120 ~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~~i~~~~g~~~~VDa~qs~g~~-~idv~~~~--~~~ss~~K~lG 196 (355)
T cd00611 120 EEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFDEVPDTGGVPLVADMSSNILSR-PIDVSKFG--VIYAGAQKNLG 196 (355)
T ss_pred cccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcceecccCCCeEEEEccccccCC-CCCHHHhC--EEEeecccccC
Confidence 11 1 11236789999999999999988899899999999999884332 221 1122 56666899999
Q ss_pred CCCceEEEEEEeCHHHHHHHHHH-----------Hhhc-cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 290 HAGTRIGWALVKDMEVAKKMTKY-----------IELN-TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 290 ~~G~RiG~l~~~~~~~~~~l~~~-----------~~~~-~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
.+| +|.++++ +++.+++... .... ...++.....++.++|+.+.+. .-++.+.++.
T Consensus 197 P~G--~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~---------gg~e~i~~~~ 264 (355)
T cd00611 197 PAG--VTVVIVR-KDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQ---------GGVEAMEKRN 264 (355)
T ss_pred CCc--eEEEEEC-HHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHH
Confidence 888 7999996 7777665431 0101 2234444566666777654321 0267888899
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc--HHHHHHHHHhCCEEeecCCCCCCCCCeEEE
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGKHFGFSPKYVRI 435 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~~~gI~v~pg~~fg~~~~~iRi 435 (456)
++..+++++.|++++++.....+... ..+.-+-+.+++. .+.....+.++|+.+.+|.. ..+.||+
T Consensus 265 ~~l~~~l~~~l~~~~gl~~~~~~~~~---------rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~---~~g~vR~ 332 (355)
T cd00611 265 RQKAQLLYDTIDNSNGFYRGPVDKRA---------RSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHR---SVGGIRA 332 (355)
T ss_pred HHHHHHHHHHHHhCccccccCCCHHH---------cCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCc---ccCeEEE
Confidence 99999999999998543211100000 0111233344431 24444577789998666653 2478999
Q ss_pred EecC--ChhHHHHHHHHHHhhh
Q 012785 436 SMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~--~~e~i~~~l~~L~~~l 455 (456)
|+.. ++||++.+++.|+++.
T Consensus 333 S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 333 SIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred EccCCCCHHHHHHHHHHHHHHh
Confidence 9876 9999999999999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.8e-14 Score=141.39 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=163.7
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeec--
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWA-- 219 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~-- 219 (456)
+.+++++++++|++.+++.... ++.. +|+...-+|++....+..... ..++.+
T Consensus 92 ~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~---~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (447)
T PRK06917 92 NWSFFVNSGSEANETAMKIAIQHFQERGIQGKH---KILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYC 168 (447)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCC---EEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcc
Confidence 5899999999999999997632 2221 899999999997765443211 111111
Q ss_pred ----cC----------cccc----cc---CCCeEEEEcCCCC-CCcccch---------HHhhhcCcEEEeeecCCCCCC
Q 012785 220 ----GD----------AKRF----NK---DGPYIELVTSPNN-PDGSVRQ---------SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 220 ----~d----------~~~l----~~---~~~~~i~v~~P~N-PtG~~~~---------~l~~~~~~~iI~De~y~~~~~ 268 (456)
.+ .+.+ +. ++..++++...+. --|...+ ++|+++|+++|.||++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGR 248 (447)
T PRK06917 169 YRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGR 248 (447)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCc
Confidence 00 1111 11 2356666644343 3345444 389999999999999986544
Q ss_pred CCCCC-----CCCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHH----HhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 269 TSITY-----PADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKY----IELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 269 ~~~~~-----~~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~----~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
++... .-..+| .+|+|.++ .|. .+|.+++. +++++.+... ....|++.++++..++.+.|+.+.+.
T Consensus 249 tG~~~a~~~~gv~PDi--~~~gK~l~-~G~~Pi~a~~~~-~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~ 324 (447)
T PRK06917 249 TGAMFAMEHWGVEPDI--MTLGKGLG-AGYTPIAATVVS-DRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKH 324 (447)
T ss_pred ccchhhHHhcCCCCCE--EEeeehhc-cCCcceEEEEEc-HHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHC
Confidence 43211 112334 56899998 885 99999996 8888877542 23358889999999999999876543
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC----------c---c
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----------Q---E 405 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----------~---~ 405 (456)
+.+++..+.-+.-++.|.+..++.+.+.-.+..|.+ +.+.+. . .
T Consensus 325 ---------~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~--------------~~ie~~~~~~~~~~~~~~~~~ 381 (447)
T PRK06917 325 ---------NLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLL--------------IGVEFVADKKTKQPFSKSQAV 381 (447)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceE--------------EEEEEeccCCcCCCCcchhHH
Confidence 233333333333333333333334433334445544 333331 0 1
Q ss_pred HHHHHHHHHhCCEEeecCCC-C-CCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 406 IEDCESFLKGNKILTRSGKH-F-GFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 ~~~~~~~l~~~gI~v~pg~~-f-g~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
...+...+.++||++.|... . +...+.+|++-. .+++++++++++|.+++
T Consensus 382 ~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l 435 (447)
T PRK06917 382 ASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSV 435 (447)
T ss_pred HHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 34566778899999987421 1 223578999844 69999999999998876
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-14 Score=142.05 Aligned_cols=255 Identities=11% Similarity=0.083 Sum_probs=163.0
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhc-C---------------CeEeeecc---
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCV-K---------------SRLYKWAG--- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~-g---------------~~~~~~~~--- 220 (456)
+.+++++++++|++.+++..... |.....+|+...-+|++....+... + ...++++.
T Consensus 105 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 184 (429)
T PRK06173 105 NKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKF 184 (429)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCccc
Confidence 58999999999999999876531 1111118999999999965433222 1 01111110
Q ss_pred -------Ccccc----c--cCCCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-----
Q 012785 221 -------DAKRF----N--KDGPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT----- 272 (456)
Q Consensus 221 -------d~~~l----~--~~~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~----- 272 (456)
+.+.+ + ..+..++++..- ++-.|...+ ++|+++|+++|.||++.+.+.++-.
T Consensus 185 ~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 264 (429)
T PRK06173 185 GEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEH 264 (429)
T ss_pred chhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHh
Confidence 11112 1 124566776542 666676644 3899999999999999864433321
Q ss_pred CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH-----HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 273 YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK-----YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 273 ~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
..-..+|+ +|+|.++ .| +.++.++++ +++.+.+.. .....|++.++++..++.+.|+.+.+.
T Consensus 265 ~gv~PDiv--~~gK~l~-gG~~p~~a~~~~-~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~-------- 332 (429)
T PRK06173 265 AGVVPDIM--CIGKALT-GGYLTLSATITT-EAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLES-------- 332 (429)
T ss_pred cCCCCCEE--Eeehhhh-CCccccceEEec-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC--------
Confidence 11123444 4999998 88 489999986 888887753 223357788999999999999876543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc---CCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEee
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTR 421 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~ 421 (456)
..+++++++-+.+.+.|++. +.+.-.+..|. .+-+.+.. ....+.+.|.++||.+.
T Consensus 333 -----~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl--------------~~~iel~~~~~~~~i~~~l~e~Gi~v~ 393 (429)
T PRK06173 333 -----PWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGA--------------IGVVEMKEPVNMATLQPRFVEHGIWVR 393 (429)
T ss_pred -----CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccce--------------EEEEEeCCcccHHHHHHHHHHCCeEEE
Confidence 13444555555666666543 21211222333 34455532 34678888899999998
Q ss_pred cCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 422 SGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 422 pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
+. .+.+|+.- ..+++++++++++|.+.+
T Consensus 394 ~~------g~~l~~~Ppl~it~~ei~~~~~~l~~~l 423 (429)
T PRK06173 394 PF------GKLVYIMPPFIISPDELSQLTSGLLRVL 423 (429)
T ss_pred ec------CCEEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 73 25788884 359999999999999876
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-13 Score=134.39 Aligned_cols=275 Identities=14% Similarity=0.114 Sum_probs=167.1
Q ss_pred CHHHHH----HHHHHHHHhcCccCCCceE-EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC-hhhhhhh--cCC
Q 012785 142 EPEFAK----EVVRLHKVVGNAITENHHI-VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS-YPSITDC--VKS 213 (456)
Q Consensus 142 ~~~lr~----aia~~~~~~g~~~~~~~~I-~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~-~~~~~~~--~g~ 213 (456)
..+|++ .++++++. +.. +++++++.|+..++.+|+++|| +|+++..+|.. +...++. .+.
T Consensus 72 ~~~lE~~~~~~la~l~g~--------~~alv~~~SG~~A~~~~l~al~~~GD----~Vl~~~~~~~~~~~~g~~~~~~~~ 139 (416)
T PRK13034 72 VDEVEALAIERAKQLFGC--------DYANVQPHSGSQANGAVYLALLKPGD----TILGMSLSHGGHLTHGAKVSLSGK 139 (416)
T ss_pred HHHHHHHHHHHHHHHhCC--------CceEEecCCcHHHHHHHHHHhcCCCC----EEEEcCccceeeeecCCcceeccc
Confidence 367777 88888763 245 4567889999999999999999 99999999876 2222221 111
Q ss_pred eE--eee-------ccCccccc----cCCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCCCC-CCCCC--CC
Q 012785 214 RL--YKW-------AGDAKRFN----KDGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYWPQ-YTSIT--YP 274 (456)
Q Consensus 214 ~~--~~~-------~~d~~~l~----~~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~~~-~~~~~--~~ 274 (456)
.. ..+ ..|.+.++ ..++++|++..+.++.-..+. ++|+++|+++|+|+++.-.. ..+.. ..
T Consensus 140 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~ 219 (416)
T PRK13034 140 WYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPF 219 (416)
T ss_pred eeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCC
Confidence 11 122 24444443 235788888666654332333 47899999999999976211 11111 11
Q ss_pred CCCcEEEecCcccc-CCCCceEEEEEEeCHHHHHHHHHHHhhc-cCcCChHHHHHHH-HHHHhhhCCCCCCCCcchhHHH
Q 012785 275 ADHDLMLFTVSKST-GHAGTRIGWALVKDMEVAKKMTKYIELN-TIGVSKDSQLRAA-KVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 275 ~~~~i~i~S~SK~~-g~~G~RiG~l~~~~~~~~~~l~~~~~~~-~~~~s~~~q~~a~-~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
.+-+++++|++|.+ |..| |++++.++.+.++++...... ..+..+....++. ++++.+ +....
T Consensus 220 ~~~Di~~~s~~K~l~g~~G---G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~-----------~~~~~ 285 (416)
T PRK13034 220 PHAHVVTTTTHKTLRGPRG---GMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEAL-----------QPEFK 285 (416)
T ss_pred CCceEEEEeCcccCCCCCC---eEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHh-----------ChhHH
Confidence 23579999999998 4334 888876566666665543211 1112222333222 223211 11123
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCC----
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGK---- 424 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~---- 424 (456)
+.++++.++.+++.+.|.+.+ +.+..+ + +.++-+++.+.. ....+.+.|+++||.+.+-.
T Consensus 286 ~~~~~l~~~a~~l~~~L~~~G-~~~~~~-~-----------~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~ 352 (416)
T PRK13034 286 TYAKQVIANAQALAEVLKERG-YDLVSG-G-----------TDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGD 352 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CEeccC-C-----------CCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCC
Confidence 456788889999999998774 444321 0 112245555532 44667788999999997521
Q ss_pred -CCCCCCCeEEEEec------CChhHHHHHHHHHHhhh
Q 012785 425 -HFGFSPKYVRISML------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 -~fg~~~~~iRis~~------~~~e~i~~~l~~L~~~l 455 (456)
.+...+..+|+++. .++++++++++.|++++
T Consensus 353 ~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~ 390 (416)
T PRK13034 353 TESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVL 390 (416)
T ss_pred CcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 11113567999954 25899999999998876
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=141.48 Aligned_cols=257 Identities=11% Similarity=0.055 Sum_probs=161.3
Q ss_pred eEEEc-cCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcC---------------CeEeeeccC------
Q 012785 165 HIVVG-TGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVK---------------SRLYKWAGD------ 221 (456)
Q Consensus 165 ~I~~t-~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g---------------~~~~~~~~d------ 221 (456)
.++++ ++++||.+.+++.... .|.. +|+...-+|++....+.... ...++++..
T Consensus 128 ~v~f~~~SGSEAve~AlklAr~~tgr~---~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 204 (464)
T PRK06938 128 KIQFCGPTGTDAVEAALKLVKTATGRS---TVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFG 204 (464)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhhCCC---eEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCcccccccc
Confidence 56554 7889999999987643 2322 89999999999876544421 111222110
Q ss_pred ----------cccccc---------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC
Q 012785 222 ----------AKRFNK---------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY 273 (456)
Q Consensus 222 ----------~~~l~~---------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~ 273 (456)
.+.++. .++.++++..-+.-.|.+.+ ++|+++|+++|.||++.+.+.++...
T Consensus 205 ~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~ 284 (464)
T PRK06938 205 LGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMF 284 (464)
T ss_pred CchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHH
Confidence 111211 13466666544554566554 38999999999999999765554221
Q ss_pred -----CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 274 -----PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 274 -----~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
.-..+|+ +++|.+| .|+++|.+++. +++ +.+.......|++.++++..++.+.|+.+.+. +
T Consensus 285 a~e~~gv~PDiv--~~gKglg-gG~PlsAv~~~-~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~---------~ 350 (464)
T PRK06938 285 AFEHAGIIPDVV--VLSKAIG-GSLPLAVVVYR-EWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEH---------R 350 (464)
T ss_pred HHHhcCCCCCEE--Eeecccc-CCCceEEEeeh-hHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHh---------H
Confidence 1123444 4799998 89999999996 664 55443345578999999999999999876543 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------------cHHHHHHH
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------------EIEDCESF 412 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------------~~~~~~~~ 412 (456)
.+++.++.-+..++.|.+..++++.+.-.+..|.+ +.+.+.. ....+...
T Consensus 351 l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm--------------~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (464)
T PRK06938 351 LAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLM--------------LGVEIVDPQGEPDALGHPPANGELASLIQRE 416 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceE--------------EEEEeccCcccccccccCCccHHHHHHHHHH
Confidence 33434433333334444433444544444455544 3333310 12346677
Q ss_pred HHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 413 LKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 413 l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+.++||.+.++.. ..+.+|+. +..++++++++++++.+.+
T Consensus 417 ~~~~Gll~~~~g~---~~~~l~~~Ppl~it~~eid~~~~~l~~~l 458 (464)
T PRK06938 417 CLRRGLILELGGR---HGSVVRFLPPLIITAEQIDEVAEIFAEAV 458 (464)
T ss_pred HHHCCeEEeecCC---CCCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 7899999987532 24678886 4459999999999998876
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-14 Score=144.07 Aligned_cols=258 Identities=9% Similarity=0.018 Sum_probs=164.2
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCCe---------------Eeeecc----
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKSR---------------LYKWAG---- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~~---------------~~~~~~---- 220 (456)
+.+++++++++|++.+++..... |.....+|+...-+|++....+...+.. .++++-
T Consensus 130 ~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~ 209 (472)
T PRK08742 130 SKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLA 209 (472)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCcccc
Confidence 58999999999999999976431 2111118999999999987655443211 111110
Q ss_pred ------------Cccccc------cCCCeEEEEcC-CCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC
Q 012785 221 ------------DAKRFN------KDGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT 272 (456)
Q Consensus 221 ------------d~~~l~------~~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~ 272 (456)
+.+.++ ..+..++++.. .++-.|...+ ++|+++|+++|.||++.+.+.++..
T Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~ 289 (472)
T PRK08742 210 EPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTL 289 (472)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc
Confidence 011111 12456666644 2666676554 3899999999999999976555432
Q ss_pred CC-----CCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH------HHhhccCcCChHHHHHHHHHHHhhhCCCC
Q 012785 273 YP-----ADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK------YIELNTIGVSKDSQLRAAKVLKVVSDSCK 340 (456)
Q Consensus 273 ~~-----~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~------~~~~~~~~~s~~~q~~a~~~L~~~~~~~~ 340 (456)
.. -..+|+ +++|.++ .| +.+|.++++ +++++.+.. .....|++.++++..++.+.|+.+.+.
T Consensus 290 ~a~e~~gv~PDiv--~~gKgl~-gG~~Plaav~~~-~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~-- 363 (472)
T PRK08742 290 FACEQAGVMPDLL--CLSKGLT-GGFLPLSAVLAT-QQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADD-- 363 (472)
T ss_pred hHHHhcCCCCCEE--EEccccc-CCCCCcceeecc-HHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHC--
Confidence 11 123344 4699998 88 499999996 888887753 124468899999999999999977653
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------c---HH
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------E---IE 407 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~---~~ 407 (456)
+.+++.++.-+..+ .+.+.+++++.+.-.+..|.+ +-+.+.. + ..
T Consensus 364 -------~l~~~~~~~g~~l~-~~~~~~~~~~~i~dvRG~Gl~--------------~giel~~~~~~~~~~~~~~~~~~ 421 (472)
T PRK08742 364 -------DVIARNQPTAARMT-QLAAQIGEHPHVADVRQAGMV--------------VAFELTRGGNKRTPFPPAARVGL 421 (472)
T ss_pred -------CHHHHHHHHHHHHH-HHHHHHhcCCCeeeEeccceE--------------EEEEeccCccccccCCchhHHHH
Confidence 23333332222222 233334445544344555554 3333311 0 13
Q ss_pred HHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 408 DCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 408 ~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.+.+.+.++||.+++. .+.|||.-. .+++++++++++|.+.+
T Consensus 422 ~~~~~~~~~Gll~~~~------g~vi~~~PpL~it~~ei~~~~~~l~~~l 465 (472)
T PRK08742 422 HAYRAALARGVVLRPL------GDVLYWMPPYCVDEAQLALLADTTRHAI 465 (472)
T ss_pred HHHHHHHHCCeEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4567778999999872 267898843 49999999999999876
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=144.24 Aligned_cols=252 Identities=10% Similarity=0.046 Sum_probs=162.5
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcCC---------------eEeeec--
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVKS---------------RLYKWA-- 219 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~---------------~~~~~~-- 219 (456)
+.+++++++++|++.+++.... ++.. +|+...-+|++....+...+. ..++++
T Consensus 117 ~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~---~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~ 193 (460)
T PRK06916 117 KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQ---RFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYT 193 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCc---EEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcc
Confidence 5899999999999999987653 3322 899999999997654433211 111111
Q ss_pred ------cC--------ccc----ccc--CCCeEEEEcC-CCCCCcccch---------HHhhhcCcEEEeeecCCCCCCC
Q 012785 220 ------GD--------AKR----FNK--DGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 220 ------~d--------~~~----l~~--~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
.+ .+. ++. .+..++++.. .+.-.|...+ ++|+++|+++|.||++.+.+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRt 273 (460)
T PRK06916 194 YRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRT 273 (460)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcC
Confidence 01 111 111 2456676654 3666676654 3899999999999999875444
Q ss_pred CCC-----CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH-------HHhhccCcCChHHHHHHHHHHHhhh
Q 012785 270 SIT-----YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK-------YIELNTIGVSKDSQLRAAKVLKVVS 336 (456)
Q Consensus 270 ~~~-----~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~a~~~L~~~~ 336 (456)
+.. ..-..+|+ +++|.++ .| +.+|.++++ +++.+.+.. .....+++.++++..++.+.|+.+.
T Consensus 274 G~~~a~~~~gv~PDiv--~~gK~l~-gG~~Pi~av~~~-~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~ 349 (460)
T PRK06916 274 GKMFACEHENVTPDIM--TAGKGLT-GGYLPIAITVTT-DEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYE 349 (460)
T ss_pred chhhHHHhcCCCCCee--eeehhhh-cCccccceeeec-HHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 421 11123443 6899998 88 599999996 888887652 2234588889999999999998765
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh---cCCccccCCCCcccccccccCCCCCceEEeecCc---------
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK---SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------- 404 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------- 404 (456)
+. +.+ ++++++-+.+.+.|++ .+.+.-.+..|.+ +-+.+..
T Consensus 350 ~~---------~l~----~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm--------------~giel~~~~~~~~~~~ 402 (460)
T PRK06916 350 KT---------NLI----EQVARKTEYVATQLEDLFALKHVGDIRQLGLM--------------VGIELVKNKETKEPFE 402 (460)
T ss_pred hc---------cHH----HHHHHHHHHHHHHHHHhhcCCCeEEeecCCce--------------eeEEeecccccccCCC
Confidence 43 233 3344444445555544 3323233444544 3333311
Q ss_pred -c---HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 405 -E---IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 -~---~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+ ...+...+.++||++.|. .+.+|+. +..+++++++++++|.+.+
T Consensus 403 ~~~~~~~~i~~~~~~~Gvl~~~~------g~~l~~~Ppl~it~~~id~~~~~l~~~l 453 (460)
T PRK06916 403 WTERVGVQVCKRSRELGMLTRPL------GNTIVFMPPLASTIDELDEMLRILYKAI 453 (460)
T ss_pred chhhHHHHHHHHHHHCCeEEEec------CCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 0 245677788999999872 2567776 4459999999999999876
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.5e-14 Score=154.05 Aligned_cols=259 Identities=14% Similarity=0.095 Sum_probs=167.1
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCC-------------eE--e--------eec
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKS-------------RL--Y--------KWA 219 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-------------~~--~--------~~~ 219 (456)
+.++++++++||++.+++.... .|.. +|+...-+|++....+..... .+ . ++.
T Consensus 681 ~~v~f~nSGsEA~e~AlklAr~~tGr~---~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 757 (1013)
T PRK06148 681 TVAFFVNSGSEANSLALRLARAHTGQR---DAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPER 757 (1013)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCC---eEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCC
Confidence 5899999999999999997653 2322 799999999998754333210 00 0 111
Q ss_pred c-Cc-------ccc----c---c--CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC-C
Q 012785 220 G-DA-------KRF----N---K--DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI-T 272 (456)
Q Consensus 220 ~-d~-------~~l----~---~--~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~-~ 272 (456)
. |. +.+ + . .++.++++...+.-.|.+.+ ++|+++|+++|.||++.+.+.++. .
T Consensus 758 ~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~ 837 (1013)
T PRK06148 758 WPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHW 837 (1013)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcc
Confidence 0 10 011 1 1 24566666544554566554 389999999999999987655542 1
Q ss_pred CC-----CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 273 YP-----ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 273 ~~-----~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
.. -..+ +.+++|.+| .|+.+|.+++. +++++.+.... ...|++.++++..++.+.|+.+.+.
T Consensus 838 ~a~e~~gv~PD--ivt~gK~lg-gG~Plgav~~~-~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e-------- 905 (1013)
T PRK06148 838 WAFETQGVVPD--IVTMGKPIG-NGHPMGAVVTT-REIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDE-------- 905 (1013)
T ss_pred hhhhhcCCCcc--eeeeccccc-CCcceEEEEEc-HHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhc--------
Confidence 11 1223 466899999 89999999997 99988875432 3478999999999999999977553
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhC
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGN 416 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~ 416 (456)
+.+++.++.-...++.|.+..++++.+.-.+..|.+ +-+.+.. ....+...+.++
T Consensus 906 -~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~--------------~gvel~~~~~~~~~~~~~~~~i~~~~~~~ 970 (1013)
T PRK06148 906 -DLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLF--------------LGIELVTDRKTKAPATAIARYVKNGARER 970 (1013)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceE--------------EEEEecCCccccCccHHHHHHHHHHHHhC
Confidence 233333333333333344333344433334444443 4444421 134567778899
Q ss_pred CEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 417 KILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
||++.+. |...+.+||... .+++++++++++|.+++
T Consensus 971 Gvl~~~~---g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l 1008 (1013)
T PRK06148 971 GILIGTE---GPHDNVLKIRPPLIFSRADADHLLEVLDDVL 1008 (1013)
T ss_pred CeEEecc---CCCCCEEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 9999874 223577888754 49999999999998876
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=130.59 Aligned_cols=305 Identities=13% Similarity=0.121 Sum_probs=205.4
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
.-..++-|+++|..... ++++.....+.+. -+|.+.. .++.+-++++++ -+.++.++-+
T Consensus 67 aysaVnqGhchpki~~a--Lqeq~~kLtlssr----afYnd~~-------~~f~~~vt~lf~--------~~kvlpmnTG 125 (427)
T KOG1402|consen 67 AYSAVNQGHCHPKIIKA--LQEQADKLTLSSR----AFYNDVL-------GEFAEYVTKLFG--------YDKVLPMNTG 125 (427)
T ss_pred hhhhcccCCCCHHHHHH--HHHHHhHhhhhhH----HHhhhhH-------HHHHHHHHHhcC--------cceeeecccc
Confidence 34557888888765422 3333221112111 2466655 588888888885 3578888877
Q ss_pred HHHHHHHHHHhcCCCC------CCCcEEEEeCCCCCChhhhhhhcCCeE----------------eeeccCcccccc---
Q 012785 173 TQLFQAALYALSSQDA------SEPISVVSAAPYYSSYPSITDCVKSRL----------------YKWAGDAKRFNK--- 227 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd------~~~~~Vlv~~P~y~~~~~~~~~~g~~~----------------~~~~~d~~~l~~--- 227 (456)
.|+.+.+++...+.|- ...+.|+...-+|++....+-.++... +++. |.++++.
T Consensus 126 aEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~-d~eale~~l~ 204 (427)
T KOG1402|consen 126 AEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG-DAEALEVALK 204 (427)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-CHHHHHHHhc
Confidence 9999999987753221 012367777888888776655554333 1221 4444432
Q ss_pred -CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC--CCCCC---cEEEecCccccCCCC
Q 012785 228 -DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT--YPADH---DLMLFTVSKSTGHAG 292 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~--~~~~~---~i~i~S~SK~~g~~G 292 (456)
.+.+++++..-|...|++.+ ++|.+|++++|.||++.+...++-. -..++ +|++ |.|.++ .|
T Consensus 205 ~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivi--lgKalS-GG 281 (427)
T KOG1402|consen 205 SPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVI--LGKALS-GG 281 (427)
T ss_pred CCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEE--Eecccc-CC
Confidence 35566666555888899877 3999999999999999986666532 22232 4554 678887 55
Q ss_pred c-eEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 012785 293 T-RIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS 371 (456)
Q Consensus 293 ~-RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 371 (456)
+ ++..+++. ++++..++...+..+++.+++..+++.+.|+.+.+. ++.++.+..-+.|+..|.++
T Consensus 282 ~~Pvsavl~~-~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~ee-------------kL~era~~lG~~l~~~L~~l 347 (427)
T KOG1402|consen 282 VYPVSAVLAD-DDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEE-------------KLVERAAKLGEILRDQLNKL 347 (427)
T ss_pred eeeeEEEEec-HHHHhccCCCccccccCCChHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhc
Confidence 4 78888884 889888888888899999999999999999976542 45555666667777777776
Q ss_pred C-C----ccccCCCCcccccccccCCCCCceEEeecC---c---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ec
Q 012785 372 G-L----FSVPELPSQFCTFLGRAFEPQPAFAWLKCE---Q---EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS--ML 438 (456)
Q Consensus 372 ~-~----~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~---~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~ 438 (456)
+ . ++..+..|.+ .-+.+. . +.-++.-.++++|++..| ...+.||+. +.
T Consensus 348 ~~~~p~~v~~VRGrGl~--------------~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkp-----tH~~IiRfaPPL~ 408 (427)
T KOG1402|consen 348 QKKFPHVVKEVRGRGLL--------------NAIVINPSKTSGQDAWDVCLALKENGLLAKP-----THGNIIRFAPPLV 408 (427)
T ss_pred cccccchhheeeccceE--------------EEEEeccccccchhHHHHHHcccccccccCC-----CCCCeEEecCCcc
Confidence 3 1 3445555543 333332 2 334456677899999888 346789998 44
Q ss_pred CChhHHHHHHHHHHhhh
Q 012785 439 DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 439 ~~~e~i~~~l~~L~~~l 455 (456)
.++++++++++.|.+.+
T Consensus 409 I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 409 ISEEDLREGIEAIEKTI 425 (427)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 58999999999998875
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-13 Score=148.18 Aligned_cols=275 Identities=16% Similarity=0.163 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-C--------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-K-------- 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g-------- 212 (456)
.+|.+.+++.+.. .-+.+++++++++|.+.+++.... .|.. +|+..+-+|++....+... +
T Consensus 627 ~elae~L~~~~p~------~~~~v~f~~SGsEA~e~AlklAr~~tgr~---~ii~~~~~yHG~t~ga~~~s~~~~~~~~~ 697 (972)
T PRK06149 627 AEFSERLAALAPD------GLDTVFLVNSGSEANDLAIRLAWAASGRR---DVVSVLEAYHGWTVATDAVSTSIADNPQA 697 (972)
T ss_pred HHHHHHHHHhCCC------CcCEEEEeCCchHHHHHHHHHHHHhcCCC---eEEEEeCCCCCcChhHhhhcCCccccccc
Confidence 4555555555421 135899999999999999985432 2221 7999999999866433211 0
Q ss_pred -------CeEee--------ecc-C-----ccc----cc-----cCCCeEEEEcCCCCCCcccch---------HHhhhc
Q 012785 213 -------SRLYK--------WAG-D-----AKR----FN-----KDGPYIELVTSPNNPDGSVRQ---------SVVNRS 253 (456)
Q Consensus 213 -------~~~~~--------~~~-d-----~~~----l~-----~~~~~~i~v~~P~NPtG~~~~---------~l~~~~ 253 (456)
...+. |.. | .+. ++ ..++.++++..-+.-.|.+.+ ++|+++
T Consensus 698 ~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~ 777 (972)
T PRK06149 698 LETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR 777 (972)
T ss_pred cCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc
Confidence 01111 110 1 011 11 124456666444554565544 389999
Q ss_pred CcEEEeeecCCCCCCCCCC------CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH-HhhccCcCChHHHH
Q 012785 254 GGILVHDLAYYWPQYTSIT------YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY-IELNTIGVSKDSQL 326 (456)
Q Consensus 254 ~~~iI~De~y~~~~~~~~~------~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~-~~~~~~~~s~~~q~ 326 (456)
|+++|.||++.+.+.++-. ..-..+|+ +|+|.+| .|+.+|.+++. +++++.+... ....+++.++++..
T Consensus 778 g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg-~G~Pl~av~~~-~~i~~~~~~~~~~~sT~~gnP~~~a 853 (972)
T PRK06149 778 GGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMG-NGHPLGAVITR-REIAEALEAEGYFFSSTGGSPVSCR 853 (972)
T ss_pred CCEEEEEeehhcCCccCccchhhhhcCCCCCEE--Eeccccc-CCeeeEEEEEc-HHHHhhhccCCcccCCCCCCHHHHH
Confidence 9999999999865544421 01123444 8999999 89999999996 8998887641 22356789999999
Q ss_pred HHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC---
Q 012785 327 RAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--- 403 (456)
Q Consensus 327 ~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--- 403 (456)
++.+.|+.+.+. +..++.++.-+..++.|.+..++.+.+...+..|.+ +-+.+.
T Consensus 854 aala~L~~i~~e---------~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~--------------~gvel~~~~ 910 (972)
T PRK06149 854 IGMAVLDVLREE---------KLQENARRVGDHLKARLEALADRHPLIGAVHGMGLY--------------LGVELVRDR 910 (972)
T ss_pred HHHHHHHHHHhc---------CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceE--------------EEEEEecCc
Confidence 999999976543 233333333333333344433344544444555544 444431
Q ss_pred ----c---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhhC
Q 012785 404 ----Q---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 404 ----~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l~ 456 (456)
. ....+...+.++||++.+. |...+.+||.- ..+++++++++++|.++++
T Consensus 911 ~~~~~~~~~~~~i~~~l~~~Gvl~~~~---g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~ 969 (972)
T PRK06149 911 QTLEPATEETAAICDRLLELGVIMQPT---GDHLNILKIKPPLCLDRESADFFVDMLDRVLT 969 (972)
T ss_pred ccCCCChHHHHHHHHHHHhCCeEEeec---CCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 1 1345677888999999874 33357889864 3599999999999998863
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-13 Score=137.91 Aligned_cols=258 Identities=12% Similarity=0.100 Sum_probs=156.7
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhh--------------cCC------eEeeecc-C
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDC--------------VKS------RLYKWAG-D 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~--------------~g~------~~~~~~~-d 221 (456)
+.+.++++++||...+++.... .|.. +|+...-+|++....+.. .|. ..+.++. |
T Consensus 156 ~~v~f~~SGsEA~e~AlklAR~~tgr~---~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd 232 (474)
T PLN02482 156 EMVRFVNSGTEACMGVLRLARAYTGRE---KIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYND 232 (474)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhcCCC---EEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCC
Confidence 6899999999999999987643 2322 899999999996532111 011 0111221 4
Q ss_pred cccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---C--CCCCcEEE
Q 012785 222 AKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---Y--PADHDLML 281 (456)
Q Consensus 222 ~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~--~~~~~i~i 281 (456)
.+.++. .+..+|++...+.-.|.+.+ ++|+++|+++|.||++.+. ..+.. . .-..++
T Consensus 233 ~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi-- 309 (474)
T PLN02482 233 LEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDL-- 309 (474)
T ss_pred hHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCE--
Confidence 444432 23456666554555676654 3899999999999999764 22211 0 112233
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
.+|+|.+| .|+.+|.++++ +++++.+... ....|++.++++..++.+.|+.+.+. +.+++..+.-+
T Consensus 310 ~t~gK~lg-gG~Pigav~g~-~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~---------~~~~~~~~~g~ 378 (474)
T PLN02482 310 TTLGKVIG-GGLPVGAYGGR-REIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQP---------GTYEYLDKITK 378 (474)
T ss_pred EEecchhh-CCCceEEEEEc-HHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhcc---------CHHHHHHHHHH
Confidence 58899999 89999999886 8998887532 23457888999999999999876542 23333333333
Q ss_pred HHHHHHHHHHHhcCCcccc-CCCCcccccccccCCCCCceEEeec-C---------cc---HHHHHHHHHhCCEEeecCC
Q 012785 359 TRWKQLRMAVQKSGLFSVP-ELPSQFCTFLGRAFEPQPAFAWLKC-E---------QE---IEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~~~~~~f~~~~~-~---------~~---~~~~~~~l~~~gI~v~pg~ 424 (456)
..++.|.+...+.+ ..+. ..-+++. -+.+.- + .+ ...+.+.+.++||++.|..
T Consensus 379 ~l~~~L~~l~~~~g-~~~~~~~v~g~~------------gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~ 445 (474)
T PLN02482 379 KLIQGILEAGKKAG-HEMCGGYISGMF------------GFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQ 445 (474)
T ss_pred HHHHHHHHHHHhcC-CCEEEcccceEE------------EEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccC
Confidence 33333443333322 1111 1112221 011111 0 01 2356677889999998732
Q ss_pred CCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 425 HFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 425 ~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
+. .++ +++..++++|+++++++.++++
T Consensus 446 -~~--~~~--psl~ht~~dId~~l~al~~~l~ 472 (474)
T PLN02482 446 -FE--AGF--TSLAHTEEDIDFTIAAAERVLA 472 (474)
T ss_pred -CC--CCc--CCCCCCHHHHHHHHHHHHHHHH
Confidence 11 112 5666699999999999998763
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-13 Score=135.36 Aligned_cols=256 Identities=12% Similarity=0.087 Sum_probs=156.2
Q ss_pred ceEEEccCHHHHHHHHHHHhcC--------CCC--CCCcEEEEeCCCCCChhhhhhhcCC-eE-------------e---
Q 012785 164 HHIVVGTGSTQLFQAALYALSS--------QDA--SEPISVVSAAPYYSSYPSITDCVKS-RL-------------Y--- 216 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~--------~gd--~~~~~Vlv~~P~y~~~~~~~~~~g~-~~-------------~--- 216 (456)
++++++++++||++.+++.... .|. ....+|+...-+|++....+..... .. +
T Consensus 111 ~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~ 190 (443)
T PRK08297 111 PHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNP 190 (443)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCC
Confidence 5899999999999999997732 121 0011799999999998765554321 10 0
Q ss_pred --eecc---C---c--------cc----cc--cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCC
Q 012785 217 --KWAG---D---A--------KR----FN--KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 217 --~~~~---d---~--------~~----l~--~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~ 265 (456)
.++. + . +. ++ ..++.++++...+.-.|...+ ++|+++|+++|.||++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG 270 (443)
T PRK08297 191 KLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTG 270 (443)
T ss_pred CCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhc
Confidence 0010 1 0 00 11 124566666544544565533 389999999999999987
Q ss_pred CCCCCCC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH-----HHhhccCcCChHHHHHHHHHHHhh
Q 012785 266 PQYTSIT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK-----YIELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 266 ~~~~~~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
.+.++.. ..-..+|+ +|+|.++ +|.+++. +++.+.+.. .....|++.++++..++.+.|+.+
T Consensus 271 fGRtG~~~a~~~~gv~PDiv--~~gK~l~-----~~a~l~~-~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l 342 (443)
T PRK08297 271 VGLTGTAWAYQQLGVRPDIV--AFGKKTQ-----VCGIMAG-RRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVI 342 (443)
T ss_pred cCccchHHHHHhcCCCCCEE--Eeccccc-----ccceecc-hHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHH
Confidence 6554321 11123444 5899874 3444443 444332211 124568899999999999999876
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHH
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS-VPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESF 412 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~ 412 (456)
.+. +.+++..+.-+..++.+.+..++.+.+. ..++.|. ++.+.+++ ....+.+.
T Consensus 343 ~~~---------~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~--------------~~~i~~~~~~~~~~~~~~ 399 (443)
T PRK08297 343 EED---------GLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGL--------------MCAFDLPTTADRDEVIRR 399 (443)
T ss_pred Hhc---------CHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccce--------------EEEEEecCHHHHHHHHHH
Confidence 543 3444444444444444554444444321 3334444 45566643 24467777
Q ss_pred HHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 413 LKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 413 l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+.++||++.|+. .+.+|++ +..+++++++++++|.+++
T Consensus 400 l~~~Gvl~~~~~-----~~~lr~~P~l~~t~~eid~~l~~l~~~l 439 (443)
T PRK08297 400 LWEEGVLVLPCG-----ERSIRFRPALTVTTEEIDAAIDALRRAL 439 (443)
T ss_pred HHHCCEEEecCC-----CCeEEEECCccCCHHHHHHHHHHHHHHH
Confidence 889999998842 3568884 5559999999999999876
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-14 Score=124.17 Aligned_cols=146 Identities=19% Similarity=0.174 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh-hhhhhcCCeEeeeccC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP-SITDCVKSRLYKWAGD 221 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~-~~~~~~g~~~~~~~~d 221 (456)
.++++.++++++. ..+++++++|+++++.+++.++..+++ +|++++|+|+... ..++..|+++..++.+
T Consensus 3 ~~~~~~l~~~~~~------~~~~~~~~~~~t~a~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 72 (170)
T cd01494 3 EELEEKLARLLQP------GNDKAVFVPSGTGANEAALLALLGPGD----EVIVDANGHGSRYWVAAELAGAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHcCC------CCCcEEEeCCcHHHHHHHHHHhCCCCC----EEEEeecccceehhhHHHhcCCEEEEeccC
Confidence 6889999999851 346899999999999999999988888 9999999999988 8888889998876654
Q ss_pred cc--------ccc----cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCC---CCCCCCCcEEE
Q 012785 222 AK--------RFN----KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTS---ITYPADHDLML 281 (456)
Q Consensus 222 ~~--------~l~----~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~---~~~~~~~~i~i 281 (456)
.. .++ ..+++++++++|+||+|...+ ++|+++++++|+|++|....... .....+.++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~ 152 (170)
T cd01494 73 DAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVT 152 (170)
T ss_pred CCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEE
Confidence 22 121 236789999999999999875 37889999999999999643332 11234568999
Q ss_pred ecCccccCCCCceEEEEEE
Q 012785 282 FTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~ 300 (456)
.|++|.++. .++|++++
T Consensus 153 ~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 153 FSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred EEcccccCC--CceEEEEe
Confidence 999999974 68999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=136.31 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=171.6
Q ss_pred CceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhcCC-e-----Ee----------eec---
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCVKS-R-----LY----------KWA--- 219 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-~-----~~----------~~~--- 219 (456)
-++|++|+|++++++.+++.... .|..+..+++.-..+|++-.-.+...|. . .. +.+
T Consensus 105 l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y 184 (449)
T COG0161 105 LDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAY 184 (449)
T ss_pred ccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCccc
Confidence 46899999999999999987642 3433333699999999998776666544 1 11 001
Q ss_pred -------cCc------ccccc-------CCCeEEEEcCC-CCC-Ccccch---------HHhhhcCcEEEeeecCCCCCC
Q 012785 220 -------GDA------KRFNK-------DGPYIELVTSP-NNP-DGSVRQ---------SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 220 -------~d~------~~l~~-------~~~~~i~v~~P-~NP-tG~~~~---------~l~~~~~~~iI~De~y~~~~~ 268 (456)
.+. +.++. ++..++++ .| ..- +|..++ ++|++||+++|.||+-.+.+.
T Consensus 185 ~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~-EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGR 263 (449)
T COG0161 185 RRGFFGEGDEEFAEAADELEALILEHGPETIAAFIV-EPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGR 263 (449)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEe-cccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCc
Confidence 011 11111 23445555 55 444 677665 399999999999999998877
Q ss_pred CCCCCCCCC-cEE--EecCccccCCCCceEEEEEEeCHHHHHHHHHH-----HhhccCcCChHHHHHHHHHHHhhhCCCC
Q 012785 269 TSITYPADH-DLM--LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY-----IELNTIGVSKDSQLRAAKVLKVVSDSCK 340 (456)
Q Consensus 269 ~~~~~~~~~-~i~--i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~-----~~~~~~~~s~~~q~~a~~~L~~~~~~~~ 340 (456)
++-....++ .|. +-+++|.+.-.-+.+|.+++. +++.+.+..- .+..|++.+|++.+++.+.|+.++++
T Consensus 264 TG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~-~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e-- 340 (449)
T COG0161 264 TGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTS-DRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEE-- 340 (449)
T ss_pred CchhhhhhhcCCCCCeeeecccccccchhhHhHhhh-HHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhc--
Confidence 764322221 122 455899987455789988886 8898888764 44568899999999999999977653
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--c---------HHHH
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--E---------IEDC 409 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~---------~~~~ 409 (456)
.++++.++.-....+.|.+.|.+++.+.-.+..|.+ .-+++.. . ...+
T Consensus 341 -------~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli--------------~~iElv~d~~t~~~f~~~~~~~~ 399 (449)
T COG0161 341 -------DLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLI--------------GAIELVADKATKTPFEARVGARV 399 (449)
T ss_pred -------CHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceE--------------EEEEEecccccccchhhhHHHHH
Confidence 455555544444444444444444444444444433 3444421 1 4567
Q ss_pred HHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 410 ESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 410 ~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
...+.++|+.+||. | +.+=++ ++.++++++++++++++.+
T Consensus 400 ~~~~~e~Gl~iRp~---g---~~i~~~PPliit~~eid~l~~~l~~al 441 (449)
T COG0161 400 RAAALERGLLIRPL---G---DVIYLMPPLIITREEIDELVDALREAL 441 (449)
T ss_pred HHHHHHCCeEEeec---C---CEEEEcCCccCCHHHHHHHHHHHHHHH
Confidence 88889999999994 2 233333 3359999999999999876
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-13 Score=135.26 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=157.2
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhh---hhhcCC-------e----------Eeeec-cC
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSI---TDCVKS-------R----------LYKWA-GD 221 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~---~~~~g~-------~----------~~~~~-~d 221 (456)
+.+.++++++||++.+++.... .|.. +|+...-+|++.... ....+. . ...++ .|
T Consensus 111 ~~v~f~~SGsEA~e~AiklAr~~tgr~---~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (433)
T PRK00615 111 HKIRFVSSGTEATMTAVRLARGITGRS---IIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYND 187 (433)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhhCCC---EEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCC
Confidence 5899999999999999987643 2332 799889999996521 111110 0 01111 13
Q ss_pred cccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---C--CCCCcEEE
Q 012785 222 AKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---Y--PADHDLML 281 (456)
Q Consensus 222 ~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~--~~~~~i~i 281 (456)
.+.++. .+..+|++...+.-.|...+ ++|+++|+++|.||++.+. ..+.. . .-..+|+
T Consensus 188 ~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~- 265 (433)
T PRK00615 188 FQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDIT- 265 (433)
T ss_pred HHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeE-
Confidence 333321 23456666544555566554 3899999999999999754 22211 1 1123443
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
+|+|.+| .|+.+|+++++ +++++.+... ....+++.+++...++.+.|+.+.+. +.+++.++.-+
T Consensus 266 -~~gK~lg-gG~p~~av~~~-~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~---------~~~~~~~~~g~ 333 (433)
T PRK00615 266 -VYGKILG-GGLPAAAVVAH-KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQ---------GFYTQLSTLEQ 333 (433)
T ss_pred -EEccccc-CCcceeeeeec-HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcc---------cHHHHHHHHHH
Confidence 5899998 78999999996 8998887532 23357788999999999999876543 23344433333
Q ss_pred HHHHHHHHHHHhcCC-ccccCCCCcccccccccCCCCCceEEeecCc---------------cHHHHHHHHHhCCEEeec
Q 012785 359 TRWKQLRMAVQKSGL-FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------------EIEDCESFLKGNKILTRS 422 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~-~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~l~~~gI~v~p 422 (456)
.-++.+.+.+++.+. +...+ .|.+ +.+.+.. ....+...|.++||.+.|
T Consensus 334 ~l~~~l~~~~~~~g~~v~~~r-~G~~--------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~ 398 (433)
T PRK00615 334 NFLSPIEEMIRSQGFPVSLVR-YGSM--------------FSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSP 398 (433)
T ss_pred HHHHHHHHHHHHcCCCeEEEe-eceE--------------EEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecC
Confidence 333444554444321 22233 3333 3333311 123577788899999987
Q ss_pred CCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 423 GKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 423 g~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.. ++ ..+ ++...++++++++++++.+++
T Consensus 399 ~~-~~--~~~--ls~~ht~~did~~~~a~~~~~ 426 (433)
T PRK00615 399 SP-FE--ASF--LSSAHSMENLDYAQNVLIDSL 426 (433)
T ss_pred cc-cc--ccc--eecCCCHHHHHHHHHHHHHHH
Confidence 43 11 112 555569999999999998876
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-12 Score=142.23 Aligned_cols=286 Identities=12% Similarity=0.026 Sum_probs=183.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCc-eEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhh---hhhcCCeEe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENH-HIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSI---TDCVKSRLY 216 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~-~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~---~~~~g~~~~ 216 (456)
..+.|+.|+++++. .+++ .|++|+|+|+++++++..+ .++|| +|++..-.|+..... ++..|+++.
T Consensus 80 ~e~aR~~ia~~lga-----~~~~~~VvFtsnaT~alnlva~~l~~~~gd----~Iv~t~~eH~svl~~~~~a~~~G~~v~ 150 (805)
T PLN02724 80 IESARQQVLEYFNA-----PPSDYACVFTSGATAALKLVGETFPWSSES----HFCYTLENHNSVLGIREYALEKGAAAI 150 (805)
T ss_pred HHHHHHHHHHHhCC-----CccceEEEEeCChHHHHHHHHHHCCCCCCC----eEEEeeccccchHHHHHHHHHcCCeEE
Confidence 36778888888864 1234 5899999999999999887 57788 899987777665443 334587777
Q ss_pred eeccCc----------------ccccc-------------CCCeEEEEcCCCCCCcccch-H---Hhhhc---------C
Q 012785 217 KWAGDA----------------KRFNK-------------DGPYIELVTSPNNPDGSVRQ-S---VVNRS---------G 254 (456)
Q Consensus 217 ~~~~d~----------------~~l~~-------------~~~~~i~v~~P~NPtG~~~~-~---l~~~~---------~ 254 (456)
.++.+. +.++. .+++++.++.-+|-||..++ + .+++. +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 665441 11221 23478889899999999988 2 23332 3
Q ss_pred cEEEeeecCCCCCCCCCCCCCCCcEEEecCccccC-CCCceEEEEEEeCHHHHHHHHHHHh-------------------
Q 012785 255 GILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIE------------------- 314 (456)
Q Consensus 255 ~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~------------------- 314 (456)
+++++|-++.-.+..--....+-++++.|+.|.+| ..| +|.++++ +++.+.+.....
T Consensus 231 ~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~G~L~vr-~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~ 307 (805)
T PLN02724 231 WMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--LGALLVR-RDAAKLLKKKYFGGGTVAASIADIDFVKRRE 307 (805)
T ss_pred eEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--ceEEEEe-hhhhhhhcCCccCCCceEEEecccceeeccc
Confidence 57999999875433211133466899999999998 446 8999997 777665543210
Q ss_pred -----hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC------CccccCCCCcc
Q 012785 315 -----LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG------LFSVPELPSQF 383 (456)
Q Consensus 315 -----~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~g~~ 383 (456)
+-....+.....++.++|+.+.+ --++.+.++.++..+++.+.|++++ .+.+..+.+..
T Consensus 308 ~~~~rfE~GT~n~~~i~~l~aal~~l~~----------ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~ 377 (805)
T PLN02724 308 RVEQRFEDGTISFLSIAALRHGFKLLNR----------LTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFK 377 (805)
T ss_pred cHHHHhcCCCcchhHHHHHHHHHHHHHH----------hChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCC
Confidence 11122344444455556654322 1245677778888888888888764 24443321000
Q ss_pred cccccccCCCCCceEEeec---Cc---cHHHHHHHHHhCCEEeecCCCCCC-----------------------------
Q 012785 384 CTFLGRAFEPQPAFAWLKC---EQ---EIEDCESFLKGNKILTRSGKHFGF----------------------------- 428 (456)
Q Consensus 384 ~~~~~~~~~~~~~f~~~~~---~~---~~~~~~~~l~~~gI~v~pg~~fg~----------------------------- 428 (456)
... ...+.-+-+.+ +. ...++..++.++||.++.|.++..
T Consensus 378 ----~~~-~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~ 452 (805)
T PLN02724 378 ----LEF-HIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQD 452 (805)
T ss_pred ----CCc-ccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhh
Confidence 000 01111222222 21 245577777889999999987631
Q ss_pred -----CCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 429 -----SPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 429 -----~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
..+.+|+||+. +.+|++.+++.|++.
T Consensus 453 ~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~ 485 (805)
T PLN02724 453 VIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISS 485 (805)
T ss_pred eecCcccceEEEEcCccCCHHHHHHHHHHHHHH
Confidence 12789999975 899999999999885
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-12 Score=122.27 Aligned_cols=278 Identities=15% Similarity=0.130 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|++++++|++. .+.+.++++|.||.+++.+| ..+|| +|+++.-+|......+...|++++-+++
T Consensus 36 v~~FE~~~ae~~G~--------k~ava~~sgT~AL~laL~al~ig~GD----eVI~ps~TfvATan~i~~~Ga~PVFvDi 103 (374)
T COG0399 36 VRRFEQAFAEYLGV--------KYAVAVSSGTAALHLALLALAIGPGD----EVIVPSFTFVATANAVLLVGAKPVFVDI 103 (374)
T ss_pred HHHHHHHHHHHhCC--------CeEEEecChHHHHHHHHHhcCCCCCC----EEEecCCchHHHHHHHHHcCCeEEEEec
Confidence 37999999999974 58888888899999999977 58999 9999999999999999999999987766
Q ss_pred Cccc-------ccc---CCCeEEEEcCC-CCCCcccch---HHhhhcCcEEEeeecCC-CCCCCCCCCCCCCcEEEecC-
Q 012785 221 DAKR-------FNK---DGPYIELVTSP-NNPDGSVRQ---SVVNRSGGILVHDLAYY-WPQYTSITYPADHDLMLFTV- 284 (456)
Q Consensus 221 d~~~-------l~~---~~~~~i~v~~P-~NPtG~~~~---~l~~~~~~~iI~De~y~-~~~~~~~~~~~~~~i~i~S~- 284 (456)
|.+. ++. .++|+|+..+- .||. -|+ ++|++||++||+|-++. +..+.+-....-.++-++||
T Consensus 104 d~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~--dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~ 181 (374)
T COG0399 104 DPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPC--DMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFH 181 (374)
T ss_pred CCcccCCCHHHHHHHcccCCeEEEEehhccCCC--CHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEec
Confidence 6543 332 25788876553 4554 334 58999999999999887 33344433233345777777
Q ss_pred -ccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc------------CcCC-hHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 285 -SKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT------------IGVS-KDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 285 -SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~------------~~~s-~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
+|.+. .| --|.+++.|++++++++.++.... .|.+ .+.-..|+-.+..+ +.+
T Consensus 182 ~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL------------~~l 247 (374)
T COG0399 182 ATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQL------------ERL 247 (374)
T ss_pred CCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHH------------HHH
Confidence 68887 55 679999999999999988764321 1111 11222222222211 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCc-ccccccccCCCCCceEEeecC---ccHHHHHHHHHhCCE----Eeec
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ-FCTFLGRAFEPQPAFAWLKCE---QEIEDCESFLKGNKI----LTRS 422 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~-~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~~l~~~gI----~v~p 422 (456)
++..++=++..+...+.|++++.+.++....+ ..++. ...+.++ .+.+.+.+.|+++|| ..+|
T Consensus 248 ~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~---------~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P 318 (374)
T COG0399 248 DEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWH---------LYTILVDEEGISRDALMESLKEAGVGAVVYFRP 318 (374)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeee---------eeEEEecCCCCCHHHHHHHHHhCCCCceEEeec
Confidence 33333333444556667776654444433322 11110 1223333 246788999999954 4455
Q ss_pred CCCC------C-----C-------CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 423 GKHF------G-----F-------SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 423 g~~f------g-----~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
-... + . ....+++.+-. +++++++.++.|++++.
T Consensus 319 ~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 319 LHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred cccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhc
Confidence 3221 0 0 13457776543 89999999999998863
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-13 Score=134.36 Aligned_cols=256 Identities=11% Similarity=0.026 Sum_probs=160.3
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhc-CCe---------------Eeeecc---
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCV-KSR---------------LYKWAG--- 220 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~---------------~~~~~~--- 220 (456)
+.++++++++++++.+++..... |.....+|+...-+|++....+... +.. ..+++.
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (427)
T TIGR00508 106 DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRF 185 (427)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccc
Confidence 58999999999999999865431 1100118999999999875443332 110 111110
Q ss_pred -------Cccccc----c--CCCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC-----
Q 012785 221 -------DAKRFN----K--DGPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT----- 272 (456)
Q Consensus 221 -------d~~~l~----~--~~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~----- 272 (456)
|.+.++ . .+..+|++..- ++-.|.... ++|+++|+++|.||++.+.+.++-.
T Consensus 186 ~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~ 265 (427)
T TIGR00508 186 DEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEH 265 (427)
T ss_pred cchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhh
Confidence 111211 1 23455655432 555555433 3899999999999999764433311
Q ss_pred CCCCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHH-----HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 273 YPADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKY-----IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 273 ~~~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~-----~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
..-..+|+ +++|.++ .|+ .++.++.+ +++.+.+... ....+++.++++..++.+.|+.+.+.
T Consensus 266 ~~v~pDi~--~~gK~l~-gG~~p~~a~~~~-~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~-------- 333 (427)
T TIGR00508 266 AGVVPDIL--CVGKALT-GGYMTLSATVTT-DKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEG-------- 333 (427)
T ss_pred cCCCCCEE--Eechhhh-cCcccceEEEEc-HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC--------
Confidence 11123444 4899997 885 78888886 8888888642 13356778999999999999866443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC---ccccCCCCcccccccccCCCCCceEEeecC--ccHHHHHHHHHhCCEEee
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGL---FSVPELPSQFCTFLGRAFEPQPAFAWLKCE--QEIEDCESFLKGNKILTR 421 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~l~~~gI~v~ 421 (456)
++ .++++++.+.+.+.|+++.. +.-.+..|.+ .-+.+. .....+...+.++||.+.
T Consensus 334 -~~----~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~--------------~~i~~~~~~~~~~~~~~l~~~Gv~~~ 394 (427)
T TIGR00508 334 -EW----QKQVSAIENQLKRELSPLRKNPVVKDVRVLGAI--------------GVVEMYKPVNVEELQKKFVEQGVWIR 394 (427)
T ss_pred -CH----HHHHHHHHHHHHHHHHHhhcCCCEEeEeccccE--------------EEEEECCccCHHHHHHHHHHCCeEEE
Confidence 22 34555555666666655421 1111222333 333442 245678888999999997
Q ss_pred cCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 422 SGKHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 422 pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+. .+.+|++.. .+++++++++++|.+.++
T Consensus 395 ~~------~~~l~~~ppl~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 395 PF------GKLIYVMPPYIITTEQLQKLTAALIEALH 425 (427)
T ss_pred ec------CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 62 246888765 589999999999998864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=125.01 Aligned_cols=275 Identities=14% Similarity=0.082 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHH-HHHHHHHHHhcC---CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGST-QLFQAALYALSS---QDASEPISVVSAAPYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~-~al~~~~~~l~~---~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~ 218 (456)
.+|.+.++++++. . .-+..++++|+| .++.+++.++.. +|+ .|+++.-++......+...|++++.+
T Consensus 108 ~~~e~~~~~~~G~---~--~~~~a~~v~~~Tg~al~laL~alr~~~~~gd----~VI~p~~th~S~~kAi~~~G~~pv~V 178 (444)
T TIGR03531 108 NKLVKDFLKLLGL---R--SIKSAFVVPLATGMSLSLCLSALRHKRPKAK----YVIWPRIDQKSCIKAISTAGFEPRVI 178 (444)
T ss_pred HHHHHHHHHHcCC---C--CCCEEEEECCHHHHHHHHHHHHcCCcCCCCC----EEEEECcChHHHHHHHHHcCCeEEEe
Confidence 4555555555543 2 124688888888 688888877753 477 99999999999999999999988766
Q ss_pred c---------cCcccccc---C---CCeEEEEcCCC-CCCcccch-----HHhhhcCcEEEeeecCCCCC--CCCCC--C
Q 012785 219 A---------GDAKRFNK---D---GPYIELVTSPN-NPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ--YTSIT--Y 273 (456)
Q Consensus 219 ~---------~d~~~l~~---~---~~~~i~v~~P~-NPtG~~~~-----~l~~~~~~~iI~De~y~~~~--~~~~~--~ 273 (456)
+ +|.+.++. + +..++++++|+ +++|..-+ ++|+++|+++|+|++|.... +..+. .
T Consensus 179 d~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g 258 (444)
T TIGR03531 179 ETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKA 258 (444)
T ss_pred eeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcc
Confidence 5 23443432 1 44667777775 34444322 48999999999999998522 11111 1
Q ss_pred C-CCC-cEEEecCccccCCCCceEEEEE-EeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 274 P-ADH-DLMLFTVSKSTGHAGTRIGWAL-VKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 274 ~-~~~-~i~i~S~SK~~g~~G~RiG~l~-~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
. .++ ++++.|++|.+..||. |+++ ++|+++++.+..... ....+.+.|.+...++. .+ .+.+
T Consensus 259 ~~~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~--g~~~~s~~~~~~~~ll~---~G--------~~g~ 323 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYP--GRASASPSLDVLITLLS---LG--------SKGY 323 (444)
T ss_pred ccccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhcc--CCCCChHHHHHHHHHHH---hC--------HHHH
Confidence 1 223 7889999999988876 5554 767899888876532 23345577877777776 33 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCce--EEeecC----ccHHHHHHHHHhCCEE--
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAF--AWLKCE----QEIEDCESFLKGNKIL-- 419 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f--~~~~~~----~~~~~~~~~l~~~gI~-- 419 (456)
+++.++.+++++.+.+.|+++. +..+.. ...|. +-+.+. .+...+-..|-.++|.
T Consensus 324 ~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~--------------~~~n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~ 389 (444)
T TIGR03531 324 LELLKERKEMYKYLKELLQKLAERHGERLLD--------------TPENPISSAMTLSTLKGKDPTMLGSMLYSRRVTGP 389 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcEeec--------------CCCCceeEEEecccccccCHHHHHHHHHhCCCCCc
Confidence 8899999999999999998752 112211 11111 222232 2455666666666662
Q ss_pred --eecCC-------CC---CCC-----CCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 420 --TRSGK-------HF---GFS-----PKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 420 --v~pg~-------~f---g~~-----~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
|.||. .| |.. ..|+-++.+ .+++|++.++++|.+.+
T Consensus 390 r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 390 RVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred eeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 45666 23 221 125544433 48999999999999864
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-12 Score=124.48 Aligned_cols=275 Identities=13% Similarity=0.134 Sum_probs=168.7
Q ss_pred HHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhh-cC--Ce---
Q 012785 144 EFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDC-VK--SR--- 214 (456)
Q Consensus 144 ~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~-~g--~~--- 214 (456)
+++-.+|+.+. +.+ .-+.|-++|.+|||...+++.... ..| +|+..+=+|++....+.. .| ..
T Consensus 93 e~Ei~~Aell~~~~p----~~e~vrfvnSGTEAtmsAiRlARa~TgR~----kIikF~G~YHG~~D~~lv~agsg~~t~g 164 (432)
T COG0001 93 ELEVELAELLIERVP----SIEKVRFVNSGTEATMSAIRLARAYTGRD----KIIKFEGCYHGHSDSLLVKAGSGAATLG 164 (432)
T ss_pred HHHHHHHHHHHHhcC----cccEEEEecchhHHHHHHHHHHHHhhCCC----eEEEEcCCCCCCccHHHhhcCcCcccCC
Confidence 44555555552 211 126899999999999999887643 334 899999999997765543 22 11
Q ss_pred ----------------EeeeccCcccccc------CCCeEEEEcC-CCCCCcccch---------HHhhhcCcEEEeeec
Q 012785 215 ----------------LYKWAGDAKRFNK------DGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGILVHDLA 262 (456)
Q Consensus 215 ----------------~~~~~~d~~~l~~------~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~iI~De~ 262 (456)
+++|+ |.+.++. ++..+|++.. +.| -|.+.+ ++|+++|+++|.||+
T Consensus 165 ~p~s~Gvp~~~a~~ti~~~yN-D~~al~~~~~~~g~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV 242 (432)
T COG0001 165 SPSSPGVPADVAKHTLVLPYN-DLEALEEAFEEYGDDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEV 242 (432)
T ss_pred CCCCCCCChhhhccEEEecCC-CHHHHHHHHHHcCCcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 01222 5555543 2455666633 355 466655 389999999999999
Q ss_pred CCCCCCC--CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhC
Q 012785 263 YYWPQYT--SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 263 y~~~~~~--~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
-.+.... +....++-.==+.+|.|..| .|+.+|..-++ +++++.+... -+..|++.++++..+..+.|+.+..
T Consensus 243 iTGFR~~~gGaq~~~gi~PDlttlGKiIG-GGlP~ga~gGr-~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~ 320 (432)
T COG0001 243 ITGFRVALGGAQGYYGVEPDLTTLGKIIG-GGLPIGAFGGR-AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMT 320 (432)
T ss_pred hhhcccCCcccccccCcCcchhhhhhhhc-CCcceeeeccH-HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHh
Confidence 8753221 11111111111567999999 99999999997 8998876543 2346889999999999999986554
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC-ccccCCCCcccccccccCCCCCceEEeecC---------cc--
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL-FSVPELPSQFCTFLGRAFEPQPAFAWLKCE---------QE-- 405 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~---------~~-- 405 (456)
. +...+++.+.-.+.++-+.+.+.+.+. +.+... |++.. +.+-+.+ .+
T Consensus 321 ~--------~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~-gsm~~-----------i~F~~~~~~n~~da~~sd~~ 380 (432)
T COG0001 321 E--------EGVYERLDALGERLAEGLRAAAERHGIPLTVNRV-GSMFG-----------IFFTEEGVRNYADAKRSDVE 380 (432)
T ss_pred c--------ccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeee-cceEE-----------EEecCCCCCCHHHHHhhchH
Confidence 2 123344444444444444455555442 333333 33322 1121211 01
Q ss_pred -HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 406 -IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 -~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
...+.+.+.++||++.|+. | +..=+|.+.++++++..++++.+++
T Consensus 381 ~~~~~~~~~l~~GV~l~ps~-~----ea~flS~ahte~di~~~~~a~~~~~ 426 (432)
T COG0001 381 RFAKFFHHLLNRGVYLAPSQ-F----EAGFLSTAHTEEDIDRTLEAADEAF 426 (432)
T ss_pred HHHHHHHHHHhCCcccCCcc-c----cceeeecccCHHHHHHHHHHHHHHH
Confidence 2234457889999999943 2 1223676679999999999988765
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.6e-12 Score=127.83 Aligned_cols=271 Identities=13% Similarity=0.075 Sum_probs=166.6
Q ss_pred HHHHHHHHHHhcCccCCCceEEEc---cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhc----------C
Q 012785 146 AKEVVRLHKVVGNAITENHHIVVG---TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCV----------K 212 (456)
Q Consensus 146 r~aia~~~~~~g~~~~~~~~I~~t---~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~----------g 212 (456)
|+.++++++. +++++.++ +|+++++.+++.+|.++|| +|++....+.......... +
T Consensus 86 r~~~a~lf~a------~~~~~~~~~~~~sgt~an~~v~~al~~~gd----~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~ 155 (452)
T PTZ00094 86 QKRALEAFGL------DPEEWGVNVQPYSGSPANFAVYTALLQPHD----RIMGLDLPSGGHLTHGFYTAKKKVSATSIY 155 (452)
T ss_pred HHHHHHHhCC------CcccceeecCCCchHHHHHHHHHHhcCCCC----EEEecccccCCcccccccccccccccceee
Confidence 3455555543 34456565 7888999999999999999 9999877776654433111 1
Q ss_pred CeEeeecc------Ccccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCC----CCCC
Q 012785 213 SRLYKWAG------DAKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYT----SITY 273 (456)
Q Consensus 213 ~~~~~~~~------d~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~----~~~~ 273 (456)
.++..++. |.+.++. .+++++++.+ +.+|...+ ++|+++|+++++|+++.-.... +.+
T Consensus 156 ~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~~--s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~- 232 (452)
T PTZ00094 156 FESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAGA--SAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSP- 232 (452)
T ss_pred eeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEeC--CCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCC-
Confidence 22223333 4444432 2567766643 34887766 4899999999999999742211 111
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh-----hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE-----LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~-----~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
..+-+++++|.+|+++-|. .|++++. +++.+.+..... ....+.+.....++.+.++.+.. .
T Consensus 233 ~~~~D~l~~S~hK~l~GP~--Gg~l~~~-~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~----------~ 299 (452)
T PTZ00094 233 FPYADVVTTTTHKSLRGPR--SGLIFYR-KKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQS----------P 299 (452)
T ss_pred CCCCcEEEcCCccCCCCCC--ceEEEEe-cccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhC----------h
Confidence 1245799999999773132 4888886 555443332211 11113444444555555654321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec--Cc-cHHHHHHHHHhCCEEe-ecCC
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC--EQ-EIEDCESFLKGNKILT-RSGK 424 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~--~~-~~~~~~~~l~~~gI~v-~pg~ 424 (456)
..+..++++.++.+.+.+.|.+.+ +.+..+... + ....+.+ ++ +.+.+...|.++||.+ +++.
T Consensus 300 ~~~~~~~~i~~l~~~l~~~L~~~g-~~v~~~~~~----------~--~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~ 366 (452)
T PTZ00094 300 EWKEYAKQVLKNAKALAAALEKRG-YDLVTGGTD----------N--HLVLVDLRPFGITGSKMEKLLDAVNISVNKNTI 366 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCC-cEEecCCCC----------C--ceEeecCCcCCCCHHHHHHHHHHCCcEEecccC
Confidence 345677888889999999997753 444322100 0 0233333 22 5677888898899999 5555
Q ss_pred CCCC---CCCeEEEEecC------ChhHHHHHHHHHHhhh
Q 012785 425 HFGF---SPKYVRISMLD------RDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ~fg~---~~~~iRis~~~------~~e~i~~~l~~L~~~l 455 (456)
.+.. .++.||+++.. ++++++.+++.|++++
T Consensus 367 p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~ 406 (452)
T PTZ00094 367 PGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAV 406 (452)
T ss_pred CCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4432 35799999742 3899999999998875
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=124.28 Aligned_cols=279 Identities=11% Similarity=0.011 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEcc-CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--hhhhcCC-eEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGT-GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS--ITDCVKS-RLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~-G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~--~~~~~g~-~~~~ 217 (456)
..+.|+.++++++. .++++|++++ ++|.++++++..|.++++. .|++ .-.|+.... ..+..|+ ++..
T Consensus 50 ~~~~r~~l~~l~~~-----~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~---~vi~-~g~f~~~~~~~~~~~~g~~~v~~ 120 (378)
T PRK03080 50 LKRVIEGTRELLSL-----PEGYEVGIVPGSDTGAWEMALWSLLGARRV---DHLA-WESFGSKWATDVVKQLKLEDPRV 120 (378)
T ss_pred HHHHHHHHHHHhCC-----CCCceEEEECCchHHHHHHHHHhcCCCCcc---eEEE-eCHHHHHHHHHHHhhcCCCCceE
Confidence 35666667766653 1235788775 8999999999999864330 4443 334433222 2355687 6665
Q ss_pred eccC------ccccccCCCeEEEEcCCCCCCcccch--HHhh-hcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAGD------AKRFNKDGPYIELVTSPNNPDGSVRQ--SVVN-RSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~d------~~~l~~~~~~~i~v~~P~NPtG~~~~--~l~~-~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++.+ .+.++. ++.|.++...|.||...+ ++++ ++|+++|+|-+..-. ..++. ..+-+++++|.-|.+
T Consensus 121 ~~~~~g~~~d~~~i~~--~~~V~~~h~~t~tG~~~pi~~I~~~~~g~~~vVDa~qs~G-~~pid-v~~iD~~~~s~~K~l 196 (378)
T PRK03080 121 LEADYGSLPDLSAVDF--DRDVVFTWNGTTTGVRVPVARWIGADREGLTICDATSAAF-ALPLD-WSKLDVYTFSWQKVL 196 (378)
T ss_pred eccCCCCCCCHhhcCC--CCCEEEEecCCccceeccchhhccccCCCeEEEecccccc-cCCCC-HHHCcEEEEehhhhC
Confidence 5433 333332 456788888999999987 4554 579999999987732 22221 112479999999988
Q ss_pred CC-CCceEEEEEEeCHHHHHHHHHHH----------------------hhccCcCCh-HHHHHHHHHHHhhhCCCCCCCC
Q 012785 289 GH-AGTRIGWALVKDMEVAKKMTKYI----------------------ELNTIGVSK-DSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 289 g~-~G~RiG~l~~~~~~~~~~l~~~~----------------------~~~~~~~s~-~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
+. +| +|++++. ++..+++.... ...+.+.++ ....++.+.|+.+.+.
T Consensus 197 ~~P~G--~g~l~v~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~------ 267 (378)
T PRK03080 197 GGEGG--HGMAILS-PRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSI------ 267 (378)
T ss_pred CCCCc--eEEEEEC-HHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHc------
Confidence 53 67 8999996 88877765321 001122232 2333334555543221
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEe
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILT 420 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v 420 (456)
.-++.+.++.++..+++++.|++++.+.+..+.... ..+..+-+.+++ ....+...+.++||.+
T Consensus 268 ---gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~---------~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v 335 (378)
T PRK03080 268 ---GGLDALIARTAANASVLYDWAEKTPWATPLVADPAT---------RSNTSVTLDFVDAQAAVDAAAVAKLLRENGAV 335 (378)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccc---------cCccEEEEEcCCchHHHHHHHHHHHHHcCCee
Confidence 025677888888889999999887754443211110 011124445554 2233444555678998
Q ss_pred ecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 421 RSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 421 ~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+.|.. +...+.+|+|+.. ++++++.+++.|++++
T Consensus 336 ~~g~~-~~~~~~vRis~~~~~t~~di~~l~~al~~~~ 371 (378)
T PRK03080 336 DIEPY-RDAPNGLRIWCGPTVEPADVEALTPWLDWAF 371 (378)
T ss_pred ccccc-cCCCCcEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 87653 2235789999764 8999999999999875
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-12 Score=125.14 Aligned_cols=271 Identities=16% Similarity=0.135 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. ++++.+++++.||.+++.++ .++|| +|+++.-+|+.....+...|++++.+++
T Consensus 27 ~~~fE~~~a~~~g~--------~~~~~~~sgt~Al~~al~~l~~~~gd----eVi~p~~t~~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 27 VEEFEKEFAEYFGV--------KYAVAVSSGTSALHLALRALGLGPGD----EVIVPAYTFPATASAILWAGAEPVFVDI 94 (363)
T ss_dssp HHHHHHHHHHHHTS--------SEEEEESSHHHHHHHHHHHTTGGTTS----EEEEESSS-THHHHHHHHTT-EEEEE-B
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCChhHHHHHHHHhcCCCcCc----eEecCCCcchHHHHHHHHhccEEEEEec
Confidence 47999999999973 58999999999999999998 46899 9999999999999999999999997776
Q ss_pred Ccccc-------cc---CCCeEEEEcCC-CCCCcccch---HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecC-
Q 012785 221 DAKRF-------NK---DGPYIELVTSP-NNPDGSVRQ---SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTV- 284 (456)
Q Consensus 221 d~~~l-------~~---~~~~~i~v~~P-~NPtG~~~~---~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~- 284 (456)
|.+.+ +. .++++|++.+. .+|. -++ ++|+++|++||+|-++.-. .+.+.....-.++.++||
T Consensus 95 ~~~~~~id~~~~~~~i~~~t~ai~~~h~~G~~~--d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~ 172 (363)
T PF01041_consen 95 DPETLNIDPEALEKAITPKTKAILVVHLFGNPA--DMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFH 172 (363)
T ss_dssp ETTTSSB-HHHHHHHHHTTEEEEEEE-GGGB-----HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESS
T ss_pred cCCcCCcCHHHHHHHhccCccEEEEecCCCCcc--cHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCC
Confidence 65433 22 36788887664 3443 233 4899999999999998732 222222223347888888
Q ss_pred -ccccCCCCceEEEEEEeCHHHHHHHHHHHhhc-----------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 285 -SKSTGHAGTRIGWALVKDMEVAKKMTKYIELN-----------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 285 -SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~-----------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
+|.+. .---|.+++.|+++.++++.++... .+..+.+....+..-|+
T Consensus 173 ~~K~i~--~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~------------- 237 (363)
T PF01041_consen 173 PTKIIT--TGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLK------------- 237 (363)
T ss_dssp TTSSS---SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHH-------------
T ss_pred CCCCCc--CCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHH-------------
Confidence 58774 3345999999999999998876422 12344444444444343
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCCcc-cccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEe
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PELPSQF-CTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILT 420 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v 420 (456)
.++...+.-+++.+.+.+.|.+.+.+.. ..+.+.. .++. .+.+.+++ +.+.+.+.|+++||.+
T Consensus 238 --~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~---------~f~i~~~~~~~~~rd~l~~~L~~~GI~~ 306 (363)
T PF01041_consen 238 --RLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYY---------RFPIRLPDEALADRDELVEALRARGIET 306 (363)
T ss_dssp --THHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCES---------SEEEEETCCGCSTHHHHHHHHHHTTBEE
T ss_pred --HhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccc---------cccccccccccchHHHHHHHHHHCCCcc
Confidence 2344444555666777788888765433 2222221 1111 23444443 4678999999999999
Q ss_pred ecCCC--CC------C---------------CCCeEEEEecC--ChhHHHHHHHHHH
Q 012785 421 RSGKH--FG------F---------------SPKYVRISMLD--RDENYNLFVQRLS 452 (456)
Q Consensus 421 ~pg~~--fg------~---------------~~~~iRis~~~--~~e~i~~~l~~L~ 452 (456)
.+... .. . ....+.+.+.. ++++++..++.|+
T Consensus 307 ~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 307 RPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp BCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred cccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 88652 00 0 01245555433 7888888888764
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=131.87 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=154.4
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC--------------------------CCCCCcEEEEeCCCCCChhhhhhhcCCeE--
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ--------------------------DASEPISVVSAAPYYSSYPSITDCVKSRL-- 215 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~--------------------------gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~-- 215 (456)
++++++++++||++.+++..... |. ...+|+...-+|++....+.......
T Consensus 123 ~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~-~r~~ii~~~~syHG~t~~als~t~~~~~ 201 (464)
T TIGR00699 123 DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGS-PDLSILSFKGAFHGRLFGSLSTTRSKPI 201 (464)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCC-cCCEEEEECCCcCCccHHHHHhcCCccc
Confidence 58999999999999999977321 10 01169999999999876655432110
Q ss_pred ------------eeecc------------------Ccccc----cc--CCCeEEEEcCCCCCCcccch---------HHh
Q 012785 216 ------------YKWAG------------------DAKRF----NK--DGPYIELVTSPNNPDGSVRQ---------SVV 250 (456)
Q Consensus 216 ------------~~~~~------------------d~~~l----~~--~~~~~i~v~~P~NPtG~~~~---------~l~ 250 (456)
++++. +.+.+ +. .+..+|++...+.-.|...+ ++|
T Consensus 202 ~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc 281 (464)
T TIGR00699 202 HKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDIT 281 (464)
T ss_pred cccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHH
Confidence 01110 01111 11 24567777555666677664 389
Q ss_pred hhcCcEEEeeecCCCCCCCCCC---CCC----CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChH
Q 012785 251 NRSGGILVHDLAYYWPQYTSIT---YPA----DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKD 323 (456)
Q Consensus 251 ~~~~~~iI~De~y~~~~~~~~~---~~~----~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~ 323 (456)
+++|+++|.||++.+.+.++-. ... ..+| .+|+|.+|-.| +++.. + ............|++.+++
T Consensus 282 ~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi--~t~gK~lg~gG----~~~~~-~-~~~~~~~~~~~~T~~gnp~ 353 (464)
T TIGR00699 282 KKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDM--VTFSKKFQTAG----YFFHD-P-AFRPNKPYRQFNTWMGDPS 353 (464)
T ss_pred HHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCE--EEehhhhccCC----ccccc-h-hccCCCCcccccCCCCCHH
Confidence 9999999999999875544321 111 1344 66899986234 44442 2 2211112234568899999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC-CccccC--CCCcccccccccCCCCCceEEe
Q 012785 324 SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG-LFSVPE--LPSQFCTFLGRAFEPQPAFAWL 400 (456)
Q Consensus 324 ~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~~~~~--~~g~~~~~~~~~~~~~~~f~~~ 400 (456)
+..++.+.|+.+.+. +.+++..+.-+..++.|.+..++++ .+...+ ..|. ++-+
T Consensus 354 ~~aaa~a~L~~l~~~---------~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Gl--------------m~gi 410 (464)
T TIGR00699 354 RALILREIIQEIKRK---------DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGT--------------FIAW 410 (464)
T ss_pred HHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEE--------------EEEE
Confidence 999999999876543 2333333333333333333333344 222222 3333 4555
Q ss_pred ecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 401 KCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 401 ~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.++. ....+.+.+.++||++.+. +.+.+||.-. .+++++++++++|.+.+
T Consensus 411 e~~~~~~~~~i~~~~~~~Gvl~~~~-----g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 411 DTPDEAKRDKLLKKARNNGVNIGGC-----GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred ecCCHHHHHHHHHHHHHCCcEEecC-----CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 6643 2456778888999999863 3578999854 49999999999998864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-11 Score=124.28 Aligned_cols=255 Identities=12% Similarity=0.081 Sum_probs=155.3
Q ss_pred ceEEEccCHHHHHHHHHHHhcCC--------CCC--CCcEEEEeCCCCCChhhhhhhcCC-e-E----ee--------e-
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQ--------DAS--EPISVVSAAPYYSSYPSITDCVKS-R-L----YK--------W- 218 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~--------gd~--~~~~Vlv~~P~y~~~~~~~~~~g~-~-~----~~--------~- 218 (456)
+.++++++++||++.+++....- |.. +..+|+...-+|++....+..... . . .+ .
T Consensus 104 ~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p 183 (431)
T TIGR03251 104 PHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNP 183 (431)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCC
Confidence 58999999999999999977421 210 011899999999998765544311 1 0 00 0
Q ss_pred ----ccC--------------cccc----c--cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCC
Q 012785 219 ----AGD--------------AKRF----N--KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 219 ----~~d--------------~~~l----~--~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~ 265 (456)
+.+ .+.+ + ..++.++++...+.-.|...+ ++|+++|+++|.||++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG 263 (431)
T TIGR03251 184 KLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTG 263 (431)
T ss_pred cccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhc
Confidence 100 0111 1 124567777555666676643 389999999999999997
Q ss_pred CCCCCCC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH-----HHhhccCcCChHHHHHHHHHHHhh
Q 012785 266 PQYTSIT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK-----YIELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 266 ~~~~~~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
.+.++.. ..-..+++ +++|.+ +. .|++.. +++.+.+.. .....+++.++++..++.+.|+.+
T Consensus 264 ~GrtG~~~a~~~~gv~PDi~--~~gK~~--~~--~g~~~~--~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l 335 (431)
T TIGR03251 264 VGLTGTAWAYQQLGVQPDIV--AFGKKT--QV--CGIMAG--RRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEII 335 (431)
T ss_pred cCccchHHHHHhcCCCCCEE--EecccC--cc--ceEEec--chHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 6555321 11133454 478875 21 255543 333222211 123467889999999999999876
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC-CccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHH
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESF 412 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~ 412 (456)
.+. ..+++.++.-+..++.|.+..++.+ .+...+..|. ++.+.++. ....+.+.
T Consensus 336 ~~~---------~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~--------------~~~i~~~~~~~~~~~~~~ 392 (431)
T TIGR03251 336 EEE---------RLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGL--------------MCAFDLPSTADRDEVIRQ 392 (431)
T ss_pred Hhc---------CHHHHHHHHHHHHHHHHHHHHHhCccceecccccce--------------eEEEEeCCHHHHHHHHHH
Confidence 543 2344555555555555555444444 3333334443 35556643 24467778
Q ss_pred HHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhh
Q 012785 413 LKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKI 454 (456)
Q Consensus 413 l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~ 454 (456)
+.++||.+.|.. .+.+|++.. .+++++++++++|.++
T Consensus 393 l~~~Gvl~~~~g-----~~~lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 393 LYREGVLLLGCG-----ERSIRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred HHhCCeEEecCC-----CCeEEEECCccCCHHHHHHHHHHHHhC
Confidence 889999998732 356887644 4899999999999864
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-11 Score=121.14 Aligned_cols=281 Identities=10% Similarity=0.116 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEc-cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCC-Chhhhhhhc--CCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVG-TGSTQLFQAALYALSSQDASEPISVVSAAPYYS-SYPSITDCV--KSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t-~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~-~~~~~~~~~--g~~~~~~ 218 (456)
.+.|+.++++++. .++.+|+++ .++|.+++.++..+..+ + .+++..=.|. .+...+... +.++..+
T Consensus 44 ~~~r~~l~~l~~~-----~~~~~v~f~~gs~T~a~~~~~~~l~~~-~----~l~i~~G~~~~~~~~~a~~~~~~~~~~~~ 113 (361)
T TIGR01366 44 GRVREGLAELFSL-----PDGYEVILGNGGATAFWDAATFGLIEK-K----SLHLSFGEFSSKFAKAVKLAPWLGEPIIV 113 (361)
T ss_pred HHHHHHHHHHhCC-----CCCceEEEECCchhHHHHHHHHhcccc-c----ccEEecCHHHHHHHHHHHhhhccCCceEE
Confidence 5667777777753 123478876 55999999999998643 2 3344443343 233334431 1233333
Q ss_pred ccCc-cccc---cCCCeEEEEcCCCCCCcccch--HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCC
Q 012785 219 AGDA-KRFN---KDGPYIELVTSPNNPDGSVRQ--SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 219 ~~d~-~~l~---~~~~~~i~v~~P~NPtG~~~~--~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G 292 (456)
+.+. +.++ ..++++|.++.-.|-||...+ ++++++|+++|+|-+.+-++. ++. ..+-+++++|--|.+|.+|
T Consensus 114 ~~~~~~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I~~~~g~~~iVDavqs~g~~-~id-v~~~D~~~~s~~K~lg~~~ 191 (361)
T TIGR01366 114 TADPGSAPEPQADPGVDVIAWAHNETSTGVAVPVRRPEGSDDALVVIDATSGAGGL-PVD-IAETDVYYFAPQKNFASDG 191 (361)
T ss_pred ecCCCCCCCCccCCCCCEEEEcccCCccceecccccccccCCCeEEEEcCccccCC-CCC-HHHCCEEEEEchhhcCCCC
Confidence 3221 1222 236789999999999999987 588889999999998874322 221 1125789999999999775
Q ss_pred ceEEEEEEeCHHHHHHHHHHHh--------------------hccCcCChHH-HHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 293 TRIGWALVKDMEVAKKMTKYIE--------------------LNTIGVSKDS-QLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 293 ~RiG~l~~~~~~~~~~l~~~~~--------------------~~~~~~s~~~-q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
- ++.++++ +++.+++..... ..+.+.++.. -.++.++++.+.+. .-++
T Consensus 192 G-l~~~~~s-~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~---------gg~e 260 (361)
T TIGR01366 192 G-LWLAIMS-PAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGN---------GGLD 260 (361)
T ss_pred c-eEEEEEC-HHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHc---------cCHH
Confidence 3 5666665 777766552210 0123333333 22445555543321 1255
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCC
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
...++.++..+.+++.|.+.+.+......... .......+.+++ +.+++...|+++||.+.++... ..
T Consensus 261 ~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~---------~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~-l~ 330 (361)
T TIGR01366 261 WAVARTADSSSRLYSWAQERPYATPFVTDPGK---------RSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRK-LG 330 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCChhh---------cccceEEEECCCccCHHHHHHHHHHCCCeeccCccc-cC
Confidence 66788888889999999988754332111100 000111222222 5677888889999999876422 23
Q ss_pred CCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 430 PKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 430 ~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
.+.+|||+.. +.++++.+++.|+++++
T Consensus 331 ~~~vRis~~~~~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 331 RNQLRVAMFPAIDPDDVEALTECVDWVVE 359 (361)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 5789999875 89999999999998763
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-11 Score=118.56 Aligned_cols=278 Identities=15% Similarity=0.102 Sum_probs=162.6
Q ss_pred HHHHHHHHHHH-HHhcCccCCCceEEEccCHHHHHHHHHHHhcCC-------------------------------CCCC
Q 012785 143 PEFAKEVVRLH-KVVGNAITENHHIVVGTGSTQLFQAALYALSSQ-------------------------------DASE 190 (456)
Q Consensus 143 ~~lr~aia~~~-~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~-------------------------------gd~~ 190 (456)
.+++....+.. +.+|... -+|-.-+|+ +|...++.+|++| ||
T Consensus 94 d~ie~l~~~ra~~lf~a~~---anvqp~Sg~-~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd-- 167 (493)
T PRK13580 94 DTVEWEAAEHAKELFGAEH---AYVQPHSGA-DANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQ-- 167 (493)
T ss_pred HHHHHHHHHHHHHHhCCCc---ccccCCCcH-HHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCC--
Confidence 44444444444 2344332 245445554 7777888888876 67
Q ss_pred CcEEEEeCCCCCChhhhh---hhcC--CeEeeeccC-------cccccc---CCCeEEEEcCCCCCCcccch-----HHh
Q 012785 191 PISVVSAAPYYSSYPSIT---DCVK--SRLYKWAGD-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVV 250 (456)
Q Consensus 191 ~~~Vlv~~P~y~~~~~~~---~~~g--~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~ 250 (456)
+|+..++...++.... ...| .+...+++| .+.++. ..++.++++..+|=.+ ..+ ++|
T Consensus 168 --~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~-~~dl~~i~eia 244 (493)
T PRK13580 168 --RLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPR-RVNFAKLREIA 244 (493)
T ss_pred --EEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCC-CcCHHHHHHHH
Confidence 8988877665543221 1111 233333333 333332 2334444545544333 433 489
Q ss_pred hhcCcEEEeeecCCCCCCCC--CC----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHH
Q 012785 251 NRSGGILVHDLAYYWPQYTS--IT----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDS 324 (456)
Q Consensus 251 ~~~~~~iI~De~y~~~~~~~--~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~ 324 (456)
+++|+++++|+++.-..... .. ...+-+|+++|++|++ .|-+.|+++++ +++++.+.........+..+..
T Consensus 245 ~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL--~GP~GG~I~~~-~~l~~~L~~a~P~i~gg~l~p~ 321 (493)
T PRK13580 245 DEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTL--RGPRGGLVLAK-KEYADAVDKGCPLVLGGPLPHV 321 (493)
T ss_pred HHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhc--cCCCeEEEEec-HHHHHHHhhCCCcccCCCccHH
Confidence 99999999999997321110 00 1124579999999988 22335999996 8888888554433333333333
Q ss_pred HHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc
Q 012785 325 QLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ 404 (456)
Q Consensus 325 q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~ 404 (456)
..+++..+..+... + .+..++++.++.+.|.+.|.+.+ +.+... + +.+..+++.+.+
T Consensus 322 iAA~avAl~e~~~~---------e-f~~y~~~l~~Na~~La~~L~~~G-~~vv~g-g-----------TdshIV~V~lg~ 378 (493)
T PRK13580 322 MAAKAVALAEARTP---------E-FQKYAQQVVDNARALAEGFLKRG-ARLVTG-G-----------TDNHLVLIDVTS 378 (493)
T ss_pred HHHHHHHHHHHhCc---------c-HHHHHHHHHHHHHHHHHHHHhcC-CCccCC-C-----------CCCCEEEEEeCC
Confidence 33333334432211 1 24568888899999999998876 333211 1 111257777754
Q ss_pred c---HHHHHHHHHhCCEEeecCCCCC--CC---CCeEEEEecC------ChhHHHHHHHHHHhhh
Q 012785 405 E---IEDCESFLKGNKILTRSGKHFG--FS---PKYVRISMLD------RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ~---~~~~~~~l~~~gI~v~pg~~fg--~~---~~~iRis~~~------~~e~i~~~l~~L~~~l 455 (456)
. ...+.+.|.+.||.+.+-..-. .+ +..|||++.. ++++++++++.|.+++
T Consensus 379 ~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l 443 (493)
T PRK13580 379 FGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVL 443 (493)
T ss_pred HHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHH
Confidence 2 3467779999999997533211 12 5679999753 5789999999998765
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.42 E-value=6e-11 Score=118.05 Aligned_cols=276 Identities=13% Similarity=0.076 Sum_probs=176.0
Q ss_pred ccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh-hh
Q 012785 131 FSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI-TD 209 (456)
Q Consensus 131 y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~-~~ 209 (456)
|..+.. ..+|+++++++++. ++++.+++++.|++++..+.+++|| .| +.++|...... ..
T Consensus 67 yag~~s-----~~~lE~~va~~~G~--------~~av~v~sGT~Al~ll~~l~l~pGD----eV--psn~~f~Tt~ahIe 127 (450)
T TIGR02618 67 YAGSRN-----FYHLERTVRELYGF--------KYVVPTHQGRGAENLLSQIAIKPGD----YV--PGNMYFTTTRYHQE 127 (450)
T ss_pred hcCCCc-----HHHHHHHHHHHHCC--------CeEEEcCCHHHHHHHHHHhCCCCcC----EE--CCceeHHHHHHHHH
Confidence 655554 48999999999974 5899999999999988877789998 76 66777554444 67
Q ss_pred hcCCeEeeecc----------------Ccccccc----C---CCeEEEEcCCCCC-Ccccch--------HHhhhcCcEE
Q 012785 210 CVKSRLYKWAG----------------DAKRFNK----D---GPYIELVTSPNNP-DGSVRQ--------SVVNRSGGIL 257 (456)
Q Consensus 210 ~~g~~~~~~~~----------------d~~~l~~----~---~~~~i~v~~P~NP-tG~~~~--------~l~~~~~~~i 257 (456)
..|+.++.+.. |.+.++. . ++.++.+.+++|- .|..++ ++|+++|+.+
T Consensus 128 ~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~v 207 (450)
T TIGR02618 128 KNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKV 207 (450)
T ss_pred hCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEE
Confidence 78887766532 3444332 1 2346777788885 478755 3899999999
Q ss_pred EeeecCCC----------CCCCCCCC-------CCCCcEEEecCccccCCC-CceEEEEEEeCHHHHHHHHHHHhhc---
Q 012785 258 VHDLAYYW----------PQYTSITY-------PADHDLMLFTVSKSTGHA-GTRIGWALVKDMEVAKKMTKYIELN--- 316 (456)
Q Consensus 258 I~De~y~~----------~~~~~~~~-------~~~~~i~i~S~SK~~g~~-G~RiG~l~~~~~~~~~~l~~~~~~~--- 316 (456)
|+|-+... +++...+- ...-+....|..|.++.+ | |+++..|++++++++......
T Consensus 208 i~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~eG~ 284 (450)
T TIGR02618 208 FYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVFEGM 284 (450)
T ss_pred EEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhcCCc
Confidence 99987653 12222110 112356888999988766 4 677768899999998885432
Q ss_pred -cCcC-ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCC
Q 012785 317 -TIGV-SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394 (456)
Q Consensus 317 -~~~~-s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (456)
+.|. +.-...+++..|....+ ..+++. -....++|.+.|.+.+ +.+..|.|+.
T Consensus 285 ~tyGgla~r~~~ala~gL~e~~~---------~~y~~~----r~~~a~~La~~L~~~G-vpv~~p~ggh----------- 339 (450)
T TIGR02618 285 PSYGGLAGRDMEAMAIGIREAVD---------YEYIEH----RVKQVRYLGDKLKAAG-VPIVEPVGGH----------- 339 (450)
T ss_pred cccCchhhhhHHHHHHHHHHhhh---------HHHHHH----HHHHHHHHHHHHHHCC-CcccCCCCcc-----------
Confidence 2222 22233333334442111 122221 2223567778887774 6666677766
Q ss_pred CceEEeecC-------c----cHHHHHHHHHhCCEEeecCCCC--CC----------CCCeEEEEecC---ChhHHHHHH
Q 012785 395 PAFAWLKCE-------Q----EIEDCESFLKGNKILTRSGKHF--GF----------SPKYVRISMLD---RDENYNLFV 448 (456)
Q Consensus 395 ~~f~~~~~~-------~----~~~~~~~~l~~~gI~v~pg~~f--g~----------~~~~iRis~~~---~~e~i~~~l 448 (456)
-++++.. . ......++..+.||-..--..+ |. .-..+|+.+.+ +.+.++...
T Consensus 340 --~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~ 417 (450)
T TIGR02618 340 --AVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVA 417 (450)
T ss_pred --eEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHH
Confidence 3555432 1 2345667778899975442222 21 12579999875 888999999
Q ss_pred HHHHhhh
Q 012785 449 QRLSKIL 455 (456)
Q Consensus 449 ~~L~~~l 455 (456)
++|..+.
T Consensus 418 ~~~~~~~ 424 (450)
T TIGR02618 418 DGIIKLY 424 (450)
T ss_pred HHHHHHH
Confidence 9988764
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-11 Score=116.76 Aligned_cols=260 Identities=13% Similarity=0.026 Sum_probs=170.5
Q ss_pred ceEE-EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeeccC-------cccc----ccCC
Q 012785 164 HHIV-VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWAGD-------AKRF----NKDG 229 (456)
Q Consensus 164 ~~I~-~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~~d-------~~~l----~~~~ 229 (456)
.+|+ ++.+++.+++.++..+..+|+ ++++..-+..+ +...++..|.. ..+..+ ...+ ...+
T Consensus 67 ~~v~~~~gsgt~~~Ea~~~nl~~~g~----~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~ 141 (360)
T PRK05355 67 YKVLFLQGGASLQFAMVPMNLLGGGK----KADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDD 141 (360)
T ss_pred cEEEEEcCCchHHHHHHHHhcCCCCC----eEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCC
Confidence 3455 557777889999999999988 77766554443 44567777865 222111 1111 1125
Q ss_pred CeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 230 PYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
+++|.++...+.||...+++.+-+|+++|+|-+..-.+..--.... .+++.|--|.+|.+| +|.++++ +++.+++
T Consensus 142 ~~~V~~th~eTstGv~~~~i~~i~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~lgP~G--lg~l~~s-~~~l~~~ 216 (360)
T PRK05355 142 AAYVHYTSNETIDGTEFHELPDTGDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNIGPAG--LTIVIVR-EDLLGRA 216 (360)
T ss_pred CCEEEEccCCCcceEecCcccccCCCcEEEEcCccccCccCCHHHc--cEEEEeccccccCCc--eEEEEEC-HHHHhhc
Confidence 7889888888999999854433389999999988743222111222 399999999999888 7999997 7777665
Q ss_pred HHH-----------H-hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 310 TKY-----------I-ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 310 ~~~-----------~-~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
... . ......++.....++.++|+.+.+. .-++...++.++..+.+++.|++++.+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~---------gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~ 287 (360)
T PRK05355 217 LPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQ---------GGVAAMEKRNQEKAALLYDAIDSSDFYRNP 287 (360)
T ss_pred ccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 441 1 1123445566666677777754321 036788888999999999999998743221
Q ss_pred CCCCcccccccccCCCCCceEEeecCcc--HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHh
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSK 453 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~ 453 (456)
.+.. . ..+.-+-+.+++. .+.+...+.++|+.+.+|.. ..+.+|+|+.. +.|+++.+++.|++
T Consensus 288 ~~~~-~---------rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~---~~g~vRiS~~~~nt~eei~~l~~~l~~ 354 (360)
T PRK05355 288 VAPE-D---------RSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR---SVGGMRASIYNAMPLEGVQALVDFMKE 354 (360)
T ss_pred CChh-h---------cCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC---ccCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 1110 0 0111234445442 24565677789999877653 24789999865 79999999999998
Q ss_pred hh
Q 012785 454 IL 455 (456)
Q Consensus 454 ~l 455 (456)
++
T Consensus 355 ~~ 356 (360)
T PRK05355 355 FE 356 (360)
T ss_pred HH
Confidence 76
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-12 Score=119.38 Aligned_cols=198 Identities=16% Similarity=0.096 Sum_probs=140.9
Q ss_pred CCceEEEccCHHHHHHHHHHHhcCCCCC----CCcEEEEeCCCCCChhhhhhhc-CCeEeeecc-------------Ccc
Q 012785 162 ENHHIVVGTGSTQLFQAALYALSSQDAS----EPISVVSAAPYYSSYPSITDCV-KSRLYKWAG-------------DAK 223 (456)
Q Consensus 162 ~~~~I~~t~G~~~al~~~~~~l~~~gd~----~~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~-------------d~~ 223 (456)
..+.|.+++.+++|++.+++...+.... ...+|+...-+|++....+... +..-+..+. |..
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t 194 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDST 194 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHH
Confidence 3579999999999999999887543210 0014888999999877665552 222222111 222
Q ss_pred cccc----C--CCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCC-----CCCcEEEec
Q 012785 224 RFNK----D--GPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYP-----ADHDLMLFT 283 (456)
Q Consensus 224 ~l~~----~--~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~-----~~~~i~i~S 283 (456)
.+++ + ...++++..-+.-.|..+. .+|+++++++|.||++.+..+.+.... ...+ |.+
T Consensus 195 ~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PD--I~t 272 (433)
T KOG1401|consen 195 ALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD--ITT 272 (433)
T ss_pred HHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCc--cee
Confidence 2221 2 3567777555766666654 279999999999999997554442111 1112 567
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHh---hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~---~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
+.|.++ .|+++|..++. +++++.+..... ..+++.++++..++...|+.+.+ .++++++...-+..
T Consensus 273 ~aK~L~-gGlPigA~~v~-~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~---------~e~~k~vs~~~k~L 341 (433)
T KOG1401|consen 273 VAKPLG-GGLPIGATGVR-DKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD---------PETLKNVSKIGKEL 341 (433)
T ss_pred ehhhcc-CCceeEEEeeh-HHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC---------HHHHHHHHHHHHHH
Confidence 899999 99999999996 899998876554 67899999999999999998765 47888888888888
Q ss_pred HHHHHHHHHhcC
Q 012785 361 WKQLRMAVQKSG 372 (456)
Q Consensus 361 ~~~l~~~L~~~~ 372 (456)
|+.+.+.+.+.+
T Consensus 342 ~~~l~e~~~~~~ 353 (433)
T KOG1401|consen 342 RKLLDEYLKKTP 353 (433)
T ss_pred HHHHHHHhccCC
Confidence 888888887754
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-10 Score=108.55 Aligned_cols=284 Identities=14% Similarity=0.157 Sum_probs=183.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
...|++.||.+-+- ---+.+++++.|+..++..+..+|| +|+...--|.+...+ ++.+|.++..
T Consensus 64 ~~vlE~RiAaLEGG--------~aa~a~aSG~AA~~~ai~~la~aGD----~iVss~~LYGGT~~lf~~tl~~~Gi~v~f 131 (426)
T COG2873 64 TDVLEERIAALEGG--------VAALAVASGQAAITYAILNLAGAGD----NIVSSSKLYGGTYNLFSHTLKRLGIEVRF 131 (426)
T ss_pred HHHHHHHHHHhhcc--------hhhhhhccchHHHHHHHHHhccCCC----eeEeeccccCchHHHHHHHHHhcCcEEEE
Confidence 47899999988752 1345677778999999999999999 999998877775544 4667888877
Q ss_pred eccC-cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAGD-AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~d-~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++.| .+.+++ +++|+|++.+-.||.+.+.+ ++|+++++++|+|..+..| +.--+...+-+|+++|+||.+
T Consensus 132 vd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atp-yl~rP~~hGADIVvHS~TK~i 210 (426)
T COG2873 132 VDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATP-YLCRPIEHGADIVVHSATKYI 210 (426)
T ss_pred eCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcc-eecchhhcCCCEEEEeecccc
Confidence 7654 456654 47899999999999999987 4899999999999988865 333334566789999999999
Q ss_pred CCCCceEEEEEEeCH-----------------------HHHH---------HHH-HHHhhccCcCChHHHHHHHHHHHhh
Q 012785 289 GHAGTRIGWALVKDM-----------------------EVAK---------KMT-KYIELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 289 g~~G~RiG~l~~~~~-----------------------~~~~---------~l~-~~~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
|-.|--||-+++... .+.+ +.+ ...+-.....+|+........|+
T Consensus 211 gGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlE-- 288 (426)
T COG2873 211 GGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLE-- 288 (426)
T ss_pred cCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchh--
Confidence 889999998877410 0111 111 11122344556666555555554
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc----cccccC-CCCCceEEeecCcc---HH
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT----FLGRAF-EPQPAFAWLKCEQE---IE 407 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~----~~~~~~-~~~~~f~~~~~~~~---~~ 407 (456)
.+.-..++.-++...+.+.|+.++.+.+...+|.-.+ .-.+.+ ...+..+-+.+++. .+
T Consensus 289 -------------TL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~ 355 (426)
T COG2873 289 -------------TLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGK 355 (426)
T ss_pred -------------hhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHH
Confidence 3334455666788889999999987766555442211 111111 12233455566542 22
Q ss_pred HHHHHHH----------hCCEEeecCCCC------------CCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 408 DCESFLK----------GNKILTRSGKHF------------GFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 408 ~~~~~l~----------~~gI~v~pg~~f------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.+.+.|+ .+-+.+-|.+.- |..++.||+|++. |+++.++.-|++.+
T Consensus 356 ~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI--Ed~~DiiaDl~qAl 423 (426)
T COG2873 356 KFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI--EDIDDIIADLEQAL 423 (426)
T ss_pred HHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc--CCHHHHHHHHHHHH
Confidence 2222222 123455565432 2257899999854 45555666666554
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-11 Score=107.76 Aligned_cols=301 Identities=15% Similarity=0.158 Sum_probs=189.7
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
...+||-+..-+.|+.+... +.. .+.... .-|+...- ...|++.+|+..+. +.-+++++|++
T Consensus 21 ~~~vDLRSDTvT~PTdeMr~-am~-eA~vgD----dVyGeD~t-----t~rLE~~vA~l~GK-------EAgLFv~SGTm 82 (384)
T KOG1368|consen 21 HRSVDLRSDTVTVPTDEMRR-AMA-EASVGD----DVYGEDPT-----TNRLEQRVAELFGK-------EAGLFVPSGTM 82 (384)
T ss_pred eeccccccccccCChHHHHH-HHh-hcccCc----ccccCCcc-----HHHHHHHHHHHhCc-------cceeeeccccc
Confidence 35678888776666654332 111 112211 13544433 37999999999985 44677777765
Q ss_pred HHHHHHHHHhc-CCCCCCCcEEEEeCCCCCChhh---hhhhcCCeEeeecc------CccccccC-----------CCeE
Q 012785 174 QLFQAALYALS-SQDASEPISVVSAAPYYSSYPS---ITDCVKSRLYKWAG------DAKRFNKD-----------GPYI 232 (456)
Q Consensus 174 ~al~~~~~~l~-~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~~~------d~~~l~~~-----------~~~~ 232 (456)
.- .+++..-+ .+|. +|++.+-++-...+ +....|+.+.++.. |.++++.. .+++
T Consensus 83 gN-llaIm~Hc~~rg~----eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~L 157 (384)
T KOG1368|consen 83 GN-LLAIMVHCHQRGS----EIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKL 157 (384)
T ss_pred cc-HHHHHHHhcCCCc----eEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceE
Confidence 54 44554544 4777 89998876543222 23344666555442 33444321 3689
Q ss_pred EEEcCCCCCCc-ccch--------HHhhhcCcEEEeeecCCCC----CCCCC---CCCCCCcEEEecCccccCCCCceEE
Q 012785 233 ELVTSPNNPDG-SVRQ--------SVVNRSGGILVHDLAYYWP----QYTSI---TYPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i~v~~P~NPtG-~~~~--------~l~~~~~~~iI~De~y~~~----~~~~~---~~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
|.+.|-||-+| .++| ++|+++|+.+-.|-+-.|. .-.|+ ....|.+-++ |||.+|.| +|
T Consensus 158 IclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiC--LSKglgAP---VG 232 (384)
T KOG1368|consen 158 ICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSIC--LSKGLGAP---VG 232 (384)
T ss_pred EEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhh--hhccCCCC---cc
Confidence 99999988776 7877 3899999999999876552 11222 2334444333 89988865 89
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
-+++.+++++++.+..+.....|.-.....+++++.. +.+. +. ..+.-.++.+.+.+.+...+.+.+
T Consensus 233 SViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLva-l~~~-----------~~-~L~~dHk~A~~lAe~~~~~~~i~v 299 (384)
T KOG1368|consen 233 SVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVA-LDEN-----------VP-LLRADHKRAKELAEYINTPEEIRV 299 (384)
T ss_pred cEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-hhcc-----------hH-HHHHHHHHHHHHHHHhccccceee
Confidence 8877779999998888776555555444444444443 2222 22 233334556667777776665555
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHH
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
..| .-++|++.+.+.. +.+.+...++++||.+.+|. ...+|+.|-. ++++++..+..+
T Consensus 300 ~v~------------a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~-----s~r~Rivlh~Qvt~~~ve~~~~~~ 362 (384)
T KOG1368|consen 300 EVP------------AVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGA-----SRRIRIVLHHQVTDEDVEYVKSVL 362 (384)
T ss_pred ecc------------hhhcceeeeecccccCCHHHHHHHHHHCCeEEeecc-----ccceEEEEEEecCHHHHHHHHHHH
Confidence 433 1344566665532 67888899999999999865 3447999864 899999999888
Q ss_pred H
Q 012785 452 S 452 (456)
Q Consensus 452 ~ 452 (456)
.
T Consensus 363 ~ 363 (384)
T KOG1368|consen 363 S 363 (384)
T ss_pred H
Confidence 4
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-10 Score=114.16 Aligned_cols=277 Identities=11% Similarity=0.061 Sum_probs=174.5
Q ss_pred ccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh-hh
Q 012785 131 FSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI-TD 209 (456)
Q Consensus 131 y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~-~~ 209 (456)
|..+.. ..+|+++++++++. ++++.++.++.|+++++...+++|| .| +..+|...... ..
T Consensus 74 Yagd~s-----~~~LE~~vAe~lG~--------e~aV~v~sGTaAl~ll~~l~v~pGd----~V--p~n~~f~Tt~ahI~ 134 (460)
T PRK13237 74 YAGSRN-----FYHLEETVQEYYGF--------KHVVPTHQGRGAENLLSRIAIKPGQ----YV--PGNMYFTTTRYHQE 134 (460)
T ss_pred hcCCCc-----HHHHHHHHHHHHCC--------CeEEEeCCHHHHHHHHHHhCCCCcC----EE--CCccchHhhHHHHH
Confidence 665555 48999999999974 4799999999999988777788998 65 44334333333 56
Q ss_pred hcCCeEeee----------------ccCccccccC-------CCeEEEEcCCCCCC-cccch--------HHhhhcCcEE
Q 012785 210 CVKSRLYKW----------------AGDAKRFNKD-------GPYIELVTSPNNPD-GSVRQ--------SVVNRSGGIL 257 (456)
Q Consensus 210 ~~g~~~~~~----------------~~d~~~l~~~-------~~~~i~v~~P~NPt-G~~~~--------~l~~~~~~~i 257 (456)
..|+..+.+ .+|.+.++.. ++.++.+.+++|-. |...+ ++|+++|+.+
T Consensus 135 ~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~V 214 (460)
T PRK13237 135 LNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKV 214 (460)
T ss_pred hCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEE
Confidence 667765544 2344444321 23356667888888 55543 3899999999
Q ss_pred EeeecCCC----------CCCCCCCC-------CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh----c
Q 012785 258 VHDLAYYW----------PQYTSITY-------PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL----N 316 (456)
Q Consensus 258 I~De~y~~----------~~~~~~~~-------~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~----~ 316 (456)
|+|-+... ..+....- ..--++...|++|.++.+- -|++++.|++++++++...-. .
T Consensus 215 i~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~--GG~i~t~D~eL~~~~r~~~~~~eG~~ 292 (460)
T PRK13237 215 FFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI--GGFLAMNDEELFDEAKELVVVYEGMP 292 (460)
T ss_pred EEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC--ceEEEECCHHHHHHHHHhccccCCCc
Confidence 99987752 12222110 1234788899999987551 399999999999999887422 1
Q ss_pred cC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCC
Q 012785 317 TI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQP 395 (456)
Q Consensus 317 ~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~ 395 (456)
++ +.+.-...+++..|.... ..++++... +..++|.+.|.+.+ +.+..|.||.+
T Consensus 293 tygg~~grd~~alAvgl~E~~---------~~~y~~~ri----~~~~~l~~~L~~~G-vpv~~p~ggH~----------- 347 (460)
T PRK13237 293 SYGGMAGRDMEAMAIGIEESV---------QYEYIEHRV----GQVRYLGEKLLAAG-VPIVEPVGGHA----------- 347 (460)
T ss_pred CCCChhhhHHHHHHhHHHhhc---------hHHHHHHHH----HHHHHHHHHHHHCC-CceecCCCceE-----------
Confidence 22 332323333333343111 123333333 24466777787765 66777888874
Q ss_pred ceEEeec-------Cc----cHHHHHHHHHhCCEEeecCCCC--CC----------CCCeEEEEecC---ChhHHHHHHH
Q 012785 396 AFAWLKC-------EQ----EIEDCESFLKGNKILTRSGKHF--GF----------SPKYVRISMLD---RDENYNLFVQ 449 (456)
Q Consensus 396 ~f~~~~~-------~~----~~~~~~~~l~~~gI~v~pg~~f--g~----------~~~~iRis~~~---~~e~i~~~l~ 449 (456)
++++. |. ....+.++..+.||-..--..+ |. .-..+|+.+.+ +.+.++...+
T Consensus 348 --v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~ 425 (460)
T PRK13237 348 --VFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVAD 425 (460)
T ss_pred --EEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHH
Confidence 44432 21 2345667778889876432222 21 12579999875 8889999999
Q ss_pred HHHhhh
Q 012785 450 RLSKIL 455 (456)
Q Consensus 450 ~L~~~l 455 (456)
+|..+.
T Consensus 426 ~~~~~~ 431 (460)
T PRK13237 426 SVIKLY 431 (460)
T ss_pred HHHHHH
Confidence 888764
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=125.01 Aligned_cols=255 Identities=12% Similarity=0.089 Sum_probs=142.4
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEe-CCCCCChhhh-----hhhcCC------eEeeec-cCcccccc--
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSA-APYYSSYPSI-----TDCVKS------RLYKWA-GDAKRFNK-- 227 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~-~P~y~~~~~~-----~~~~g~------~~~~~~-~d~~~l~~-- 227 (456)
+.+++++++++|++.+++.... .|.. +|+.. .-+|+.+... ....|. ....++ .|.+.++.
T Consensus 105 ~~v~f~~sGseA~e~AlklAr~~tgr~---~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 181 (431)
T PRK06209 105 DMVKFCKNGSDATSAAVRLARAYTGRD---LVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALF 181 (431)
T ss_pred ceEEEecCHHHHHHHHHHHHHHHhCCC---eEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHH
Confidence 5899999999999999986643 2331 56554 2233221100 000111 011222 14444432
Q ss_pred ----CCCeEEEEcCCC--CCCcccch---HHhhhcCcEEEeeecCCCCCCCCC--CC--CCCCcEEEecCccccCCCCce
Q 012785 228 ----DGPYIELVTSPN--NPDGSVRQ---SVVNRSGGILVHDLAYYWPQYTSI--TY--PADHDLMLFTVSKSTGHAGTR 294 (456)
Q Consensus 228 ----~~~~~i~v~~P~--NPtG~~~~---~l~~~~~~~iI~De~y~~~~~~~~--~~--~~~~~i~i~S~SK~~g~~G~R 294 (456)
.+..+|++...+ .|.-..+. ++|+++|+++|.||++.+...... .. .-..+ +.+++|.+| .|+.
T Consensus 182 ~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PD--i~t~gK~lg-gG~p 258 (431)
T PRK06209 182 EDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPD--LSCFGKALG-NGFA 258 (431)
T ss_pred HhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcc--eeeehhhhc-CCcc
Confidence 234555553322 12211122 489999999999999876433211 10 11223 477999999 7899
Q ss_pred EEEEEEeCHHHHHH--HHH------HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 295 IGWALVKDMEVAKK--MTK------YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 295 iG~l~~~~~~~~~~--l~~------~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
+|+++++ +++++. +.. .....+++.+++...++.+.|+.+.+. +.+++.++.-+..++.+.+
T Consensus 259 ~~av~~~-~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~---------~~~~~~~~~g~~l~~~L~~ 328 (431)
T PRK06209 259 VSALAGK-REYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDE---------DVIERLHEQGAKLAAGVNE 328 (431)
T ss_pred cEEEEEH-HHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHHHHHH
Confidence 9999996 888775 311 113357778889999999998876543 2344444444444444444
Q ss_pred HHHhcCCccccCCCCcccccccccCCCCCceEEeecC---c-c---HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE---Q-E---IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~---~-~---~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
...+++.....+..|.+.. ..++... . . ...+.+.+.++||.+.| ++|+...
T Consensus 329 ~~~~~~~~~~vr~~G~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~----------l~is~~h 387 (431)
T PRK06209 329 AAAEHGLQDHVRVSGRPCC-----------LTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS----------LVVSYAH 387 (431)
T ss_pred HHHhCCCCeEEEeecceEE-----------EEEecCCcccCCcHHHHHHHHHHHHHCCccccc----------ccccccC
Confidence 3333442211222233211 1222111 1 1 22456677889998632 4677555
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|.+++
T Consensus 388 t~~dId~~l~~l~~~l 403 (431)
T PRK06209 388 GDADIERTIDAVHGAL 403 (431)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998876
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.5e-11 Score=126.45 Aligned_cols=195 Identities=12% Similarity=0.007 Sum_probs=131.2
Q ss_pred CCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCCC-----CCcEEEecCccccCCCC-
Q 012785 229 GPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYPA-----DHDLMLFTVSKSTGHAG- 292 (456)
Q Consensus 229 ~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~~-----~~~i~i~S~SK~~g~~G- 292 (456)
+..++++... ++-.|.+++ ++|+++|+++|.||++.+.+.++..... ..+| -+++|.++ .|
T Consensus 584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDI--i~~gKgLt-gG~ 660 (817)
T PLN02974 584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDI--ACYAKLLT-GGL 660 (817)
T ss_pred CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCE--Eeeccccc-CCC
Confidence 3456666432 666677765 3899999999999999987666543221 2334 45899998 89
Q ss_pred ceEEEEEEeCHHHHHHHHH------HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH-
Q 012785 293 TRIGWALVKDMEVAKKMTK------YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR- 365 (456)
Q Consensus 293 ~RiG~l~~~~~~~~~~l~~------~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~- 365 (456)
+.+|.++++ +++.+.+.. ..+..+++.++++..++.+.|+.+++. +..+...+..++.++.+.
T Consensus 661 ~Plaa~l~~-~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~---------~~~~~l~~~~~~l~~~l~~ 730 (817)
T PLN02974 661 VPLAATLAT-EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDP---------STNPNLIPPGSRLRELWDE 730 (817)
T ss_pred CccEEEEEc-HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcc---------cHHHHHHHHHHHHHHHHHH
Confidence 699999997 999998852 234568999999999999999977653 223333333434333333
Q ss_pred ---HHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHH-hCCEEeecCCCCCCCCC
Q 012785 366 ---MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLK-GNKILTRSGKHFGFSPK 431 (456)
Q Consensus 366 ---~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~-~~gI~v~pg~~fg~~~~ 431 (456)
+.|++++.+.-.+..|.+ +-+.+.. ....+.+.+. ++||.++|. .+
T Consensus 731 ~l~~~l~~~p~V~~VRg~Gl~--------------~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~------Gn 790 (817)
T PLN02974 731 ELVRAISSLPNVERVVSLGTV--------------LALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL------GN 790 (817)
T ss_pred HHHHHHhhCCCeeEEEeeeeE--------------EEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec------CC
Confidence 344555544444445544 4444421 1235666777 999999982 36
Q ss_pred eEEEEe--cCChhHHHHHHHHHHhhhC
Q 012785 432 YVRISM--LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 432 ~iRis~--~~~~e~i~~~l~~L~~~l~ 456 (456)
.||+.- ..++|++++++++|.+.|+
T Consensus 791 vi~l~pP~~i~~e~l~~~~~~l~~~~~ 817 (817)
T PLN02974 791 VVYLMCGPTTSPETCTRLLRKVYRRLS 817 (817)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 788753 3489999999999998764
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-11 Score=115.74 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc---CCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV---KSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~~~~ 218 (456)
.+.|+.+|++++. ++++|+||+|+||+++++++.... .++...++|++..--|+.....++.+ |+++..+
T Consensus 88 E~aR~~VAklInA------d~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~l 161 (428)
T KOG1549|consen 88 EAAREQVAKLINA------DPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYL 161 (428)
T ss_pred HHHHHHHHHHhCC------CCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEe
Confidence 5788999999976 566799999999999999998743 33322237888888888777666554 7777766
Q ss_pred ccCcccc------cc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecC
Q 012785 219 AGDAKRF------NK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTV 284 (456)
Q Consensus 219 ~~d~~~l------~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~ 284 (456)
+.+.+++ ++ .+++++.+..-+|-+|++++ ++|+++++.++.|.++.-.+..--...-+-+++..|.
T Consensus 162 pv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~ 241 (428)
T KOG1549|consen 162 PVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISA 241 (428)
T ss_pred ccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeec
Confidence 6543333 21 37899999999999999998 3899999999999998732221111334567899999
Q ss_pred ccccCCCCceEEEEEEe
Q 012785 285 SKSTGHAGTRIGWALVK 301 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~ 301 (456)
.|.||.+| +|++++.
T Consensus 242 HK~ygp~~--iGaLYvr 256 (428)
T KOG1549|consen 242 HKIYGPPG--IGALYVR 256 (428)
T ss_pred ccccCCCc--ceEEEEc
Confidence 99999999 9999997
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-10 Score=123.51 Aligned_cols=281 Identities=11% Similarity=0.044 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHH----HHHHHHHHHhcCC-CCCCCcEEEEeCCCCCChhhhhhhcCCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGST----QLFQAALYALSSQ-DASEPISVVSAAPYYSSYPSITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~----~al~~~~~~l~~~-gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~ 217 (456)
.++|+.++++++. ++|.++++++ +++.++++++.++ ||..+..|+++...+......+...|++++.
T Consensus 571 ~~~r~~la~i~g~--------~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~ 642 (993)
T PLN02414 571 EDLGDLLCEITGF--------DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVV 642 (993)
T ss_pred HHHHHHHHHHhCC--------CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEE
Confidence 5677777777752 6899999998 8999999999866 6643447999998888888888889999998
Q ss_pred eccCc------ccccc------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCC-CCCCCCCcE
Q 012785 218 WAGDA------KRFNK------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTS-ITYPADHDL 279 (456)
Q Consensus 218 ~~~d~------~~l~~------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~-~~~~~~~~i 279 (456)
++.|. +.++. +++++|++++|+|-+|...+ ++|+++|+++++|-++.-..... .+...+-++
T Consensus 643 v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~ 722 (993)
T PLN02414 643 VGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADV 722 (993)
T ss_pred eccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCE
Confidence 87653 33322 25689999999999998865 47889999999999986322111 123456789
Q ss_pred EEecCccccCCC----CceEEEEEEeCHHHHHHHHHHH-----------hhccCcC---Ch----HHHHHHHHHHHhhhC
Q 012785 280 MLFTVSKSTGHA----GTRIGWALVKDMEVAKKMTKYI-----------ELNTIGV---SK----DSQLRAAKVLKVVSD 337 (456)
Q Consensus 280 ~i~S~SK~~g~~----G~RiG~l~~~~~~~~~~l~~~~-----------~~~~~~~---s~----~~q~~a~~~L~~~~~ 337 (456)
+++|..|+|+.| |=-+|.+.+. +++...+-... .....|. ++ ....++...+..+
T Consensus 723 ~~~s~HK~f~~P~G~GGPg~G~l~~~-~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~l-- 799 (993)
T PLN02414 723 CHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMM-- 799 (993)
T ss_pred EEecCCccCCcCcccCCCCeeeEEEc-hhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHH--
Confidence 999999977522 3348999886 76655442110 0011122 12 2222334444421
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-------ccHHHHH
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-------QEIEDCE 410 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~ 410 (456)
| .+-+++..+....+.+++.+.|++...+.+..+.+.+.+- | .++++ .+.+++.
T Consensus 800 G--------~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hE----------f-v~~~~~l~~~~g~~~~di~ 860 (993)
T PLN02414 800 G--------SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHE----------F-IIDLRPFKNTAGIEPEDVA 860 (993)
T ss_pred C--------HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeee----------E-EEeccccccccCCCHHHHH
Confidence 2 4567777888888899999999774333343333321000 1 12332 2347788
Q ss_pred HHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 411 SFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 411 ~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+.|.++||..-- ..|. ..+.+||+..- ++++++.++++|+++.
T Consensus 861 krL~d~Gihapt-~~~p-v~~~lmiepTE~~skeelDrf~~al~~i~ 905 (993)
T PLN02414 861 KRLMDYGFHAPT-MSWP-VPGTLMIEPTESESKAELDRFCDALISIR 905 (993)
T ss_pred HHHHHcCcEEee-eccc-cCCEEEEEeeeeCCHHHHHHHHHHHHHHH
Confidence 888899998544 3353 48899999763 8999999999998764
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-10 Score=108.44 Aligned_cols=279 Identities=14% Similarity=0.127 Sum_probs=169.0
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--h
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS--I 207 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~--~ 207 (456)
-|+++.- ...+.+.+++.+++ ..++|++++|++..+++.+.++|++ .|++..-.+-...+ .
T Consensus 30 ~YG~D~~-----~~~~e~~~ae~~g~--------~a~~Fv~sGT~aN~lal~~~~~~~~----~vi~~~~aHi~~~E~Ga 92 (342)
T COG2008 30 VYGEDPT-----TNALEQRIAELFGK--------EAALFVPSGTQANQLALAAHCQPGE----SVICHETAHIYTDECGA 92 (342)
T ss_pred CCCCCHH-----HHHHHHHHHHHhCC--------ceEEEecCccHHHHHHHHHhcCCCC----eEEEeccccceecccCc
Confidence 4666543 35666667776652 5799999999999999999999998 78887765544332 2
Q ss_pred hhhcC--CeEeeec-----cCcccccc-------C--CCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecC
Q 012785 208 TDCVK--SRLYKWA-----GDAKRFNK-------D--GPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAY 263 (456)
Q Consensus 208 ~~~~g--~~~~~~~-----~d~~~l~~-------~--~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y 263 (456)
.+.++ .++...+ ++++.++. . .+..+++.|.+|.-|++++ ++|+++|+.+-.|-+-
T Consensus 93 ~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR 172 (342)
T COG2008 93 PEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGAR 172 (342)
T ss_pred HHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHH
Confidence 23333 3333222 23444432 1 2344555566667899998 2899999999999765
Q ss_pred CCCC---C-CCCCC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 264 YWPQ---Y-TSITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 264 ~~~~---~-~~~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.+.. . .+... ...-+++..++||..+.| +|.+++.+.+++++++..+.....+.+..--. ++.++..+.+.
T Consensus 173 ~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~---~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~l-aA~~~~~l~~~ 248 (342)
T COG2008 173 LANALVALGVALKTIKSYVDSVSFCLTKGGGAP---VGAIVFGNRDFAKRARRWRKRAGGLMRKARFL-AAQGLYALEDD 248 (342)
T ss_pred HHHHHHHcCCCHHHHHhhCCEEEEecccCCcce---eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHH-HHHHHHHHhcc
Confidence 4310 0 11111 123467888899987755 59998888999999988766444443332222 22333322232
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCE
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI 418 (456)
.-...-++-.+..+.|.+.|...+++++.. ++++|.+++.++... .+.++..|+
T Consensus 249 ----------~~~~~~~Han~mA~~La~~~~~~~G~~~~~-------------~~~tN~vf~~l~~~~---i~~l~~~~~ 302 (342)
T COG2008 249 ----------VWRLAADHANAMAARLAEGLEAKPGVKLAF-------------PVETNMVFVRLPESA---IEALRLAGA 302 (342)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhhhcCCceecc-------------CCcccEEEEECChHH---HHHHHhhch
Confidence 111222333334667778887665555443 356778999987422 133444444
Q ss_pred EeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
....|..-+.....+|+..+. ++|++++++..+++++
T Consensus 303 ~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 303 LFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred hheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 433322111111478988764 8999999999998875
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-09 Score=110.66 Aligned_cols=284 Identities=16% Similarity=0.148 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC------hhhhhhhcCCeEe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS------YPSITDCVKSRLY 216 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~------~~~~~~~~g~~~~ 216 (456)
..+++.++++.+. ++.+++++++.++.+++.++ .+|| +|++++..+.. .....+..|++++
T Consensus 130 ~~~e~~lA~l~Ga--------e~a~vv~sgtaAl~l~l~~l-~~Gd----eVIvs~~e~~~~ggs~~i~~~~~~~G~~l~ 196 (464)
T PRK04311 130 RALAALLCALTGA--------EDALVVNNNAAAVLLALNAL-AAGK----EVIVSRGELVEIGGAFRIPDVMRQAGARLV 196 (464)
T ss_pred HHHHHHHHHHhCC--------CeEEEECCHHHHHHHHHHHh-CCCC----EEEEcchhhhhcCcchhhHHHHHHCCcEEE
Confidence 5788888888863 35677777889999988665 7888 99998764331 2335667899988
Q ss_pred eecc----Ccccccc---CCCeEEEEcCCCCCC--cc--cch-----HHhhhcCcEEEeeecCCCC----CC----CCCC
Q 012785 217 KWAG----DAKRFNK---DGPYIELVTSPNNPD--GS--VRQ-----SVVNRSGGILVHDLAYYWP----QY----TSIT 272 (456)
Q Consensus 217 ~~~~----d~~~l~~---~~~~~i~v~~P~NPt--G~--~~~-----~l~~~~~~~iI~De~y~~~----~~----~~~~ 272 (456)
.++. +.+.++. .+++++++.+++||+ |. ..+ ++|+++|+++|+|...... .+ .+..
T Consensus 197 ~v~~~~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~ 276 (464)
T PRK04311 197 EVGTTNRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTV 276 (464)
T ss_pred EECCCCCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCch
Confidence 7764 2233332 368999999999993 53 322 4789999999999953210 01 1111
Q ss_pred ---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCC-CCCCcchh
Q 012785 273 ---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCK-PSGSEDEC 348 (456)
Q Consensus 273 ---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~-~~~~~~~~ 348 (456)
...+-+++++|.+|.+|-| ..|+++++ +++++++++....-.+.+......+..+.|....+... +..-..-+
T Consensus 277 ~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g~-~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~ 353 (464)
T PRK04311 277 QELLAAGVDLVTFSGDKLLGGP--QAGIIVGK-KELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLR 353 (464)
T ss_pred hhHHhcCCcEEEecCcccccCC--ceEEEEEc-HHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHH
Confidence 1235689999999988745 48999996 88888877432222333444444444444443222210 00000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--C--ccccCC-----CCcccccccccCCCCCceEEeecC---ccHHHHHHHHHhC
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSG--L--FSVPEL-----PSQFCTFLGRAFEPQPAFAWLKCE---QEIEDCESFLKGN 416 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~--~--~~~~~~-----~g~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~~~l~~~ 416 (456)
.+....+.++++.+.+.+.|+.+. . .++... .|.+.. . .-+.+ -+.++ .+.+.+.+.|++.
T Consensus 354 ~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~---~---~~~~~-~v~~~~~~~~~~~l~~~lr~~ 426 (464)
T PRK04311 354 LLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPV---D---RLPSA-AVTLTPKDRSLEALAARLRLL 426 (464)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcC---C---CCCeE-EEEEeCCCCCHHHHHHHHhcC
Confidence 233344667778888888888753 1 122211 122200 0 01112 22332 1567888889875
Q ss_pred C--EEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 417 K--ILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 g--I~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
. |..+- .++.+.+-+-. .+++++.++++|++++
T Consensus 427 ~~~i~~r~------~~~~~~ld~r~~~~~~~~~~~~~~~~~~ 462 (464)
T PRK04311 427 PPPVIGRI------EDGRLLLDLRTLEEEDEERLAAALLEAL 462 (464)
T ss_pred CCCEEEEE------ECCEEEEEeCcCCHHHHHHHHHHHHHHh
Confidence 4 55543 47778888755 7889999999998875
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-10 Score=110.57 Aligned_cols=247 Identities=13% Similarity=0.099 Sum_probs=159.5
Q ss_pred EEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccccc----C--CCe
Q 012785 166 IVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNK----D--GPY 231 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~----~--~~~ 231 (456)
-++|+|+||++..++.+.. .+++ +|++++-.++.....++.+|.+...++. |.+.++. . ++.
T Consensus 87 G~~TsGgTean~~a~~~ar~~~~~~----~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~ 162 (380)
T PRK02769 87 GYITNGGTEGNLYGCYLARELFPDG----TLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPP 162 (380)
T ss_pred EEEecChHHHHHHHHHHHHHhCCCc----EEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcE
Confidence 4789999999876665442 4566 8999999999999999999887665553 4444432 1 378
Q ss_pred EEEEcCCCCCCcccch-----HHhhhcC---cEEEeeecCCCCCCC------CCCCCCCCcEEEecCccccCCCCceEEE
Q 012785 232 IELVTSPNNPDGSVRQ-----SVVNRSG---GILVHDLAYYWPQYT------SITYPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~-----~l~~~~~---~~iI~De~y~~~~~~------~~~~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
+|+++.++|+||.+-+ ++|+++| +++.+|-+|.+.... ++....+-+.+..|..|.++ .-..+|.
T Consensus 163 lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~-~P~g~G~ 241 (380)
T PRK02769 163 IIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIG-SPMPCGI 241 (380)
T ss_pred EEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCC-CCCCcEE
Confidence 8888999999999977 4888988 699999999863221 12212245778899999877 2345899
Q ss_pred EEEeCHHHHHHHHHHHhh-----ccCc--CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 012785 298 ALVKDMEVAKKMTKYIEL-----NTIG--VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK 370 (456)
Q Consensus 298 l~~~~~~~~~~l~~~~~~-----~~~~--~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 370 (456)
++++ ++..+.+...... .+.. -+......+-..|+.+ + .+-+++..++..+..+++.+.|++
T Consensus 242 l~~r-~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~l--g--------~~G~~~~~~~~~~la~~l~~~L~~ 310 (380)
T PRK02769 242 VLAK-KKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSL--G--------SKGLRQRVQHCLDMAQYAVDRLQA 310 (380)
T ss_pred EEEe-hhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHH--C--------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9997 5555544211000 0111 2223344444444432 1 445677788888888899999987
Q ss_pred cCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHH
Q 012785 371 SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFV 448 (456)
Q Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l 448 (456)
.+...+..| ..+.+.++.+. +.+ . +|..+.+ ..+.+|+.+.. ++|.+++++
T Consensus 311 ~g~~~~~~p--------------~~~~v~f~~~~--~~~---~--~~w~l~~------~~~~~hi~~~~~~~~~~~~~f~ 363 (380)
T PRK02769 311 NGIPAWRNP--------------NSITVVFPCPS--ERI---W--KKWHLAT------SGNQAHIITMPHHNKQQIDSLI 363 (380)
T ss_pred CCCEEEcCC--------------CceEEEEcCCC--HHH---H--hCeeEcc------cCCEEEEEECCCCCHHHHHHHH
Confidence 643223322 22245555442 222 1 4444443 24589999864 778899999
Q ss_pred HHHHhhh
Q 012785 449 QRLSKIL 455 (456)
Q Consensus 449 ~~L~~~l 455 (456)
+.|.+.+
T Consensus 364 ~dl~~~~ 370 (380)
T PRK02769 364 DELIFDL 370 (380)
T ss_pred HHHHHHH
Confidence 9888754
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=106.09 Aligned_cols=269 Identities=13% Similarity=0.126 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD 221 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 221 (456)
...|+..||+++++ + +.++.+..-.|...++.++..|.| .|+..+-.+.......+... +.. ..|
T Consensus 114 Hk~LE~kiAqfh~r-------E-D~ilypscfdANag~feail~ped----AvfSDeLNhASIIdGirLck-ry~--h~d 178 (417)
T KOG1359|consen 114 HKLLESKIAQFHGR-------E-DTILYPSCFDANAGAFEAILTPED----AVFSDELNHASIIDGIRLCK-RYR--HVD 178 (417)
T ss_pred HHHHHHHHHHHhCC-------C-ceEEeccccccchHHHHHhcChhh----hhhccccccchhhhhhHHHh-hhc--cch
Confidence 47899999999975 3 455666666888888889999988 88888888887777666543 111 112
Q ss_pred ccccc-----c--CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CCCCCCC----CCCCCcEEE
Q 012785 222 AKRFN-----K--DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQYTSIT----YPADHDLML 281 (456)
Q Consensus 222 ~~~l~-----~--~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~~~~~~----~~~~~~i~i 281 (456)
.-.++ . .+-++|+.-..-.-.|-+.| +++++||.++++||++.- +.-.+.. -..+-+|..
T Consensus 179 v~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiin 258 (417)
T KOG1359|consen 179 VFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIIN 258 (417)
T ss_pred hHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehh
Confidence 21221 1 23455555444455666655 378899999999999872 1111111 234568999
Q ss_pred ecCccccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCc--CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 282 FTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIELNTIG--VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 282 ~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~--~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
+|++|.+| ..| ||..+| +.+++.+++..+..-++ .+|-.--.+++++..+... ......++
T Consensus 259 sTLgKAlGga~G---Gyttgp-~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s------------~~~i~~~~ 322 (417)
T KOG1359|consen 259 STLGKALGGASG---GYTTGP-KPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVS------------SKEIQSRQ 322 (417)
T ss_pred hhhhhhhcCCCC---CCccCC-hhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhh------------HHHHHHHH
Confidence 99999986 455 999998 88988887764422222 2222222333333322222 13445566
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC---CCCCeEEE
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG---FSPKYVRI 435 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg---~~~~~iRi 435 (456)
.+++.+++..+..+ +++....-..|+ +.+.-..-...+.+.+.+.||.|.. ..|. .+...+|+
T Consensus 323 a~~qrfr~~me~aG-ftIsg~~hPI~p------------v~lGda~lA~~~ad~lLk~Gi~Vig-fs~PvVP~gkariRV 388 (417)
T KOG1359|consen 323 ANTQRFREFMEAAG-FTISGASHPICP------------VMLGDARLASKMADELLKRGIYVIG-FSYPVVPKGKARIRV 388 (417)
T ss_pred HHHHHHHHHHHhcC-ceecCCCCCccc------------eecccHHHHHHHHHHHHhcCceEEe-ecCCcCCCCceEEEE
Confidence 77778887776654 555432222221 2222111345577788899999985 3343 24557888
Q ss_pred EecC--ChhHHHHHHHHHHhhh
Q 012785 436 SMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~--~~e~i~~~l~~L~~~l 455 (456)
.++. ++|+++++++++.++.
T Consensus 389 qiSAaHt~edid~~i~Af~~vg 410 (417)
T KOG1359|consen 389 QISAAHTEEDIDRLIEAFSEVG 410 (417)
T ss_pred EEehhcCHHHHHHHHHHHHHHH
Confidence 8765 9999999999998764
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=110.52 Aligned_cols=288 Identities=12% Similarity=0.085 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEE--EccCHHHHHHHHHHHhcC--------CCC-CCCcEEEEeCCCCCChhhhhhh
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIV--VGTGSTQLFQAALYALSS--------QDA-SEPISVVSAAPYYSSYPSITDC 210 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~--~t~G~~~al~~~~~~l~~--------~gd-~~~~~Vlv~~P~y~~~~~~~~~ 210 (456)
.++.+.+.+|+. ..|.+.. .+++. +|+|++|++..++.+... .|. ..+..|++++-.++.....++.
T Consensus 79 ~~le~~~~~~la~llg~~~~-~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~ 157 (431)
T TIGR01788 79 AEIENRCVNMLADLWHAPAK-DAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARY 157 (431)
T ss_pred HHHHHHHHHHHHHHhCCCCC-CCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHH
Confidence 355555555553 3443311 03454 489999999998866531 110 0112799999999999999999
Q ss_pred cCCeEeeeccCccc-------ccc---CCCeEEEEcCCCCCCcccch-----HHhhhc------CcEEEeeecCCCCC--
Q 012785 211 VKSRLYKWAGDAKR-------FNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS------GGILVHDLAYYWPQ-- 267 (456)
Q Consensus 211 ~g~~~~~~~~d~~~-------l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~------~~~iI~De~y~~~~-- 267 (456)
+|+++..++.|.++ ++. .++.+|+++..+|.||.+.+ ++|+++ ++++.+|-+|.+..
T Consensus 158 lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p 237 (431)
T TIGR01788 158 FDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAP 237 (431)
T ss_pred cCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHH
Confidence 99888777766432 322 25678888889999999987 488888 99999999998421
Q ss_pred --C--CCCC-CCCCCcEEEecCcccc-CCCCceEEEEEEeCHH-HHHHHHH---HHh----hccCcCChHHHHHHHHHHH
Q 012785 268 --Y--TSIT-YPADHDLMLFTVSKST-GHAGTRIGWALVKDME-VAKKMTK---YIE----LNTIGVSKDSQLRAAKVLK 333 (456)
Q Consensus 268 --~--~~~~-~~~~~~i~i~S~SK~~-g~~G~RiG~l~~~~~~-~~~~l~~---~~~----~~~~~~s~~~q~~a~~~L~ 333 (456)
. .+.. ....-+-+..|..|.+ +..| +|.+++++++ +.+.+.. +.. ..+...+...-.++...+.
T Consensus 238 ~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~ 315 (431)
T TIGR01788 238 FVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN 315 (431)
T ss_pred HhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHH
Confidence 1 1111 1223356888999965 6555 8999987543 2232211 100 0122223322112222221
Q ss_pred hhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC--CCcccccccccCCCCCceEEeecCc------c
Q 012785 334 VVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL--PSQFCTFLGRAFEPQPAFAWLKCEQ------E 405 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~g~~~~~~~~~~~~~~~f~~~~~~~------~ 405 (456)
+..- ...-+++..++..+..+++.+.|++.+.+++..+ ..+ -+.+++++ +
T Consensus 316 -l~~l-------G~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~--------------iV~Fr~~~~~~~~~~ 373 (431)
T TIGR01788 316 -FLRL-------GREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIP--------------LVAFKLKDDADPGYT 373 (431)
T ss_pred -HHHh-------cHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCce--------------EEEEEeCCCCCCCcC
Confidence 1111 1345667777788888899999998877776543 222 23344431 3
Q ss_pred HHHHHHHHHhCCEEeecCCCC-C-CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 406 IEDCESFLKGNKILTRSGKHF-G-FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 ~~~~~~~l~~~gI~v~pg~~f-g-~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..++.+.|.++|+.+..-..- . .+.-++|+++-. +++.++++++.|++++
T Consensus 374 ~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~ 427 (431)
T TIGR01788 374 LYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAAL 427 (431)
T ss_pred HHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 567888899999875432110 0 123468999742 7788999999988765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-09 Score=108.32 Aligned_cols=253 Identities=14% Similarity=0.088 Sum_probs=149.3
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh-hh-----hhhcCCeE----eeecc-------Ccccccc----C
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP-SI-----TDCVKSRL----YKWAG-------DAKRFNK----D 228 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~-~~-----~~~~g~~~----~~~~~-------d~~~l~~----~ 228 (456)
..+++|+..++.+|+++|| +|+..+....++. +. .+..+... ++|.. |.+.++. .
T Consensus 107 ~SG~~AN~av~~aL~~pgD----~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~ 182 (475)
T PLN03226 107 LSGSPANFAVYTALLQPHD----RIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF 182 (475)
T ss_pred CchHHHHHHHHHHhCCCCC----EEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc
Confidence 5667888899999999999 9998553111111 11 11112221 13322 4444432 3
Q ss_pred CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC--CCCCC-CCCCcEEEecCcccc-CCCCceEEEEE
Q 012785 229 GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY--TSITY-PADHDLMLFTVSKST-GHAGTRIGWAL 299 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~--~~~~~-~~~~~i~i~S~SK~~-g~~G~RiG~l~ 299 (456)
++++|++. .++ +|...+ ++|+++|+++++|+++.-... ...+. ...-+++++|++|++ |..| |+++
T Consensus 183 ~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G---g~I~ 257 (475)
T PLN03226 183 RPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG---GMIF 257 (475)
T ss_pred CCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc---eEEE
Confidence 56766553 233 444443 489999999999999873111 00111 124579999999988 5444 8888
Q ss_pred EeCHHHH-----------H---HHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 300 VKDMEVA-----------K---KMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 300 ~~~~~~~-----------~---~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++ +++. + .+...... ...++++....++...|+.+... ..+..++++.++.+.|
T Consensus 258 ~~-~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~----------~~~~~~~~~~~na~~L 326 (475)
T PLN03226 258 FR-KGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP----------EFKAYQKQVKANAAAL 326 (475)
T ss_pred Ec-hhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCc----------CHHHHHHHHHHHHHHH
Confidence 86 5433 1 12211111 12233333333444556543322 2355678888999999
Q ss_pred HHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCC----CCCCeEEEEe
Q 012785 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFG----FSPKYVRISM 437 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg----~~~~~iRis~ 437 (456)
.+.|.+.+ +.+..+. .....+++.+.. +..++.+.|.+.||.+..+...+ ..+..+|++.
T Consensus 327 ~~~L~~~G-~~l~~~~------------t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt 393 (475)
T PLN03226 327 ANRLMSKG-YKLVTGG------------TDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGT 393 (475)
T ss_pred HHHHHhCC-CEEEcCC------------CCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCc
Confidence 99998854 4444321 011246667632 56778899999999998764322 1356689853
Q ss_pred c------CChhHHHHHHHHHHhhh
Q 012785 438 L------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 438 ~------~~~e~i~~~l~~L~~~l 455 (456)
. .++++++++.+.|.+++
T Consensus 394 ~~lt~~g~~~~d~~~ia~~i~~~~ 417 (475)
T PLN03226 394 PAMTSRGLVEKDFEKVAEFLHRAV 417 (475)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
Confidence 2 27889999999888776
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=120.65 Aligned_cols=184 Identities=15% Similarity=0.112 Sum_probs=122.1
Q ss_pred HHHHHHHHHH-HHhcCccCCCceEEEccCHHHHHHHHHHHhc------C-CCCCCCcEEEEeCCCCCChhhhhhhcCCe-
Q 012785 144 EFAKEVVRLH-KVVGNAITENHHIVVGTGSTQLFQAALYALS------S-QDASEPISVVSAAPYYSSYPSITDCVKSR- 214 (456)
Q Consensus 144 ~lr~aia~~~-~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~------~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~- 214 (456)
+....+++.+ ...+. ..+++++++++++|++.+++... . ++.. +|+...-+|++....+...+..
T Consensus 59 ~~~~~la~~L~~~~p~---~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~---~il~~~~~yHG~t~~~~s~~~~~ 132 (339)
T PF00202_consen 59 PEAAELAEKLAELFPG---GLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRR---KILAFEGSYHGRTLGALSLTGNP 132 (339)
T ss_dssp HHHHHHHHHHHHHSST---TEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTT---EEEEETTTB-TSSHHHHHHSSST
T ss_pred cchhhhhhhhhhcccc---ccceeeeccCchHHHHHHHHHhhcccccccccCCc---eEEEeeeeeeccCcccccccCCc
Confidence 4444455554 33211 24689999999999999999876 2 2332 8999999999977655443211
Q ss_pred ------------Eeeecc-Cccc--------------c---ccCCCeEEEEcCCCCCCcccch---------HHhhhcCc
Q 012785 215 ------------LYKWAG-DAKR--------------F---NKDGPYIELVTSPNNPDGSVRQ---------SVVNRSGG 255 (456)
Q Consensus 215 ------------~~~~~~-d~~~--------------l---~~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~ 255 (456)
+..++. |... + ...+..++++..-+.-.|...+ ++|+++|+
T Consensus 133 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gi 212 (339)
T PF00202_consen 133 PYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGI 212 (339)
T ss_dssp HHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-
T ss_pred cccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccccccccc
Confidence 111222 2212 1 1124566666544555565544 38999999
Q ss_pred EEEeeecCCCCCCCCCCC-----CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHH
Q 012785 256 ILVHDLAYYWPQYTSITY-----PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAK 330 (456)
Q Consensus 256 ~iI~De~y~~~~~~~~~~-----~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~ 330 (456)
++|.||++.+...++... .-+.+|++ ++|.++ .|+.+|.++++ +++.+.+.......|++.++++..++.+
T Consensus 213 llI~DEV~tG~gRtG~~~a~~~~gv~PDiv~--~gK~l~-gG~p~sav~~~-~~i~~~~~~~~~~~T~~g~p~~~aaa~~ 288 (339)
T PF00202_consen 213 LLIADEVQTGFGRTGKFFASEHYGVDPDIVT--FGKGLG-GGLPISAVLGS-EEIMEAFQPGSHGSTFGGNPLSCAAALA 288 (339)
T ss_dssp EEEEEETTTTTTTTSSSSGHHHHTSSSSEEE--EEGGGG-TTSSEEEEEEE-HHHHTTSCTTSSTCTTTT-HHHHHHHHH
T ss_pred ceecccccccccccCCccceecccccCcccc--cccchh-hhhhccccccc-chhhccccccccccccccchHhhhhhhh
Confidence 999999999765544221 22346665 569999 88999999997 9988887666666799999999999999
Q ss_pred HHHhhhC
Q 012785 331 VLKVVSD 337 (456)
Q Consensus 331 ~L~~~~~ 337 (456)
.|+.+.+
T Consensus 289 ~l~~~~~ 295 (339)
T PF00202_consen 289 TLEILEE 295 (339)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 9997655
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-09 Score=105.41 Aligned_cols=267 Identities=14% Similarity=0.083 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceE--EEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEee
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHI--VVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I--~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~ 217 (456)
.++.+.+.+++. ..|. +++++ ++|+|+|+++..++.+... ++. .|+++.-.++.....++.+|.++..
T Consensus 65 ~~~e~~v~~~ia~llg~---~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~----~vi~s~~~H~Sv~kaa~~lg~~~~~ 137 (374)
T PLN03032 65 RQFEVGVLDWFARLWEL---EKDEYWGYITTCGTEGNLHGILVGREVFPDG----ILYASRESHYSVFKAARMYRMEAVK 137 (374)
T ss_pred HHHHHHHHHHHHHHhCC---CCccCCEEEeCchHHHHHHHHHHHHHhCCCc----EEEeCCCceeHHHHHHHHcCCCCeE
Confidence 455555555542 2333 23455 8999999999988876542 344 7888888888999999999887766
Q ss_pred eccCc------ccccc----C--CCeEEEEcCCCCCCcccch-----HHhhhcC-----cEEEeeecCCCCCCC-----C
Q 012785 218 WAGDA------KRFNK----D--GPYIELVTSPNNPDGSVRQ-----SVVNRSG-----GILVHDLAYYWPQYT-----S 270 (456)
Q Consensus 218 ~~~d~------~~l~~----~--~~~~i~v~~P~NPtG~~~~-----~l~~~~~-----~~iI~De~y~~~~~~-----~ 270 (456)
++.|. +.++. . ++.+++++..+|+||.+-+ ++|+++| +++.+|-+|.+.... +
T Consensus 138 V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~ 217 (374)
T PLN03032 138 VPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAP 217 (374)
T ss_pred eeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCc
Confidence 65543 33332 1 3667778789999999976 4888886 589999999863111 1
Q ss_pred -CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh-----ccCcCChHH--HHHHHHHHHhhhCCCCCC
Q 012785 271 -ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL-----NTIGVSKDS--QLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 271 -~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~-----~~~~~s~~~--q~~a~~~L~~~~~~~~~~ 342 (456)
+.....-+-+..|..|..| .-.-+|.+++. .+..+.+...... .+...|... ...+-..|.. -|
T Consensus 218 ~~~~~~~vDSis~s~HK~~g-~P~g~G~ll~r-~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~--~G---- 289 (374)
T PLN03032 218 EVTFRKPIGSVSVSGHKFLG-CPMPCGVALTR-KKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRR--KG---- 289 (374)
T ss_pred ccCCCcCCcEEEECcccccC-CCcCeEEEEEE-chhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHH--hC----
Confidence 1111123567889999877 23558999998 5555544321111 123333322 2222222332 22
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS 422 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p 422 (456)
.+-+.++.+..-+..+++.+.|++.+...+..|. .+-+.++.+... . + .+|-.+.+
T Consensus 290 ----~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~--------------~~~V~f~~~~~~-~----~-~~~w~l~~ 345 (374)
T PLN03032 290 ----YRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNEL--------------SSTVVFERPMDE-A----F-IKKWQLAC 345 (374)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCC--------------ceEEEEcCCCcH-h----H-hheeeecc
Confidence 4556667777778888888889886533233332 223444444211 1 1 13444443
Q ss_pred CCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 423 GKHFGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 423 g~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
..+.+|+++.. +++.++++++.|++.
T Consensus 346 ------~~~~~hi~vm~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 346 ------EGDIAHVVVMPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred ------cCCEEEEEECCCCCHHHHHHHHHHHhcc
Confidence 24589999864 678999999988763
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-09 Score=105.42 Aligned_cols=281 Identities=15% Similarity=0.147 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCC---C---hhhhhhhcCCeEe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYS---S---YPSITDCVKSRLY 216 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~---~---~~~~~~~~g~~~~ 216 (456)
..+++.++++.+. + ..+++++++.++.+++.+ +.+|| +|++.+..|. + +....+..|++++
T Consensus 125 ~~le~~lA~l~ga-------e-~alvv~sg~aAi~l~l~~-l~~Gd----eVIvs~~e~v~~ggs~~i~~~~~~~G~~~~ 191 (454)
T TIGR00474 125 SHVEGLLCELTGA-------E-DALVVNNNAAAVLLALNT-LAKGK----EVIVSRGELVEIGGSFRIPDVMEQSGAKLV 191 (454)
T ss_pred HHHHHHHHHHhCC-------C-cEEEECCHHHHHHHHHHH-hCCcC----EEEECCChhhhhcchhhHHHHHHHcCCEEE
Confidence 6888889988863 2 344566677888888855 57888 9999886642 2 2345667799998
Q ss_pred eecc----Ccccccc---CCCeEEEEcCCCCCC--cc--cch-----HHhhhcCcEEEeeecCCC--C------CCCCCC
Q 012785 217 KWAG----DAKRFNK---DGPYIELVTSPNNPD--GS--VRQ-----SVVNRSGGILVHDLAYYW--P------QYTSIT 272 (456)
Q Consensus 217 ~~~~----d~~~l~~---~~~~~i~v~~P~NPt--G~--~~~-----~l~~~~~~~iI~De~y~~--~------~~~~~~ 272 (456)
.++. |.+.++. .+++++++.+++||+ |. ..+ ++|+++|+++|+|....- + ...+..
T Consensus 192 ~v~~~~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~ 271 (454)
T TIGR00474 192 EVGTTNRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTV 271 (454)
T ss_pred EeCCCCCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCccc
Confidence 8764 3333432 368999999999995 63 333 488999999999986321 0 011111
Q ss_pred ---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCC-CCCCcchh
Q 012785 273 ---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCK-PSGSEDEC 348 (456)
Q Consensus 273 ---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~-~~~~~~~~ 348 (456)
...+-+++++|.+|.+|-| ..|+++++ +++++++++..-.-.+.+..+...+..+.+....+... +..-..-+
T Consensus 272 ~~~~~~GaDiv~fSg~K~LgGp--~~G~i~g~-~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~ 348 (454)
T TIGR00474 272 QEVIAAGVDLVTFSGDKLLGGP--QAGIIVGK-KELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLR 348 (454)
T ss_pred ccHhHcCCCEEEecCccccCCC--eEEEEEEC-HHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHH
Confidence 1234579999999988645 47999996 88877665432222233444444454555543322210 00000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCc--cccCC-----CCcccccccccCCCCCce-EEeecC-ccHHHHHHHHHhCC
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKS--GLF--SVPEL-----PSQFCTFLGRAFEPQPAF-AWLKCE-QEIEDCESFLKGNK 417 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~--~~~--~~~~~-----~g~~~~~~~~~~~~~~~f-~~~~~~-~~~~~~~~~l~~~g 417 (456)
.+....+..+++...+.+.|+.. +.+ ++... .|.+. .. .-+.| +-++.. .+...+.+.|++..
T Consensus 349 ~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p---~~---~l~~~~v~~~~~~~~~~~l~~~lr~~~ 422 (454)
T TIGR00474 349 MLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLP---DE---RLPSYAVTLTPDGLSAEKLEARLRELP 422 (454)
T ss_pred HhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCc---CC---CCCeEEEEEecCCCCHHHHHHHHhcCC
Confidence 23333456667778888888763 211 22221 12220 00 01112 222222 25678889998876
Q ss_pred --EEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHH
Q 012785 418 --ILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRL 451 (456)
Q Consensus 418 --I~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L 451 (456)
|..+- .++.+-+-+-. .+++++.++++|
T Consensus 423 ~~ii~r~------~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 423 PPIIGRI------EDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred CCEEEEE------ECCEEEEEeCcCCHHHHHHHHHHh
Confidence 45442 46777787754 778888888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-08 Score=97.70 Aligned_cols=262 Identities=13% Similarity=0.131 Sum_probs=177.6
Q ss_pred ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeecc------Ccccccc-----CCC
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWAG------DAKRFNK-----DGP 230 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~~------d~~~l~~-----~~~ 230 (456)
+-++++.+++-+++.++..+.+||| +|++..-+..+ +.++++.+|.++..+.. |++.++. .+.
T Consensus 57 ~~~ll~gsGt~amEAav~sl~~pgd----kVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~ 132 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLVEPGD----KVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDI 132 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhccCCCC----eEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCc
Confidence 4577888899999999999999999 99988877765 56789999998875443 3443322 245
Q ss_pred eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCC-CCCCCCcEEEecCccccC-CCCceEEEEEEeCH
Q 012785 231 YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSI-TYPADHDLMLFTVSKSTG-HAGTRIGWALVKDM 303 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~-~~~~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~ 303 (456)
+++.++..--+||...+ ++|++++.++|+|-+=+-.. .++ .+..+-++++.+-=|.++ .|| +|.+.++ +
T Consensus 133 ~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg-~~~~vd~wgiDv~itgSQK~l~~PPG--la~v~~S-~ 208 (383)
T COG0075 133 KAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGG-EPLKVDEWGIDVAITGSQKALGAPPG--LAFVAVS-E 208 (383)
T ss_pred cEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCC-cccchhhcCccEEEecCchhccCCCc--cceeEEC-H
Confidence 67777665567898877 37889999999998755211 122 244566899999999995 667 6888886 6
Q ss_pred HHHHHHHHHH------------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 304 EVAKKMTKYI------------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 304 ~~~~~l~~~~------------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
+..+++.... ....+.++...-++..+.|+.+.. +-++...++.++..+.++
T Consensus 209 ~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~----------EGle~r~~RH~~~~~a~r 278 (383)
T COG0075 209 RALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILE----------EGLEARIARHRRLAEALR 278 (383)
T ss_pred HHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHH
Confidence 6555554221 123445555566666677765433 347788889999999999
Q ss_pred HHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cH-HHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--C
Q 012785 366 MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EI-EDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--R 440 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~-~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~ 440 (456)
+.++.++.-.+. +..+ ..++-.-+.+|+ +. +.....++++|+.+.+|..- .....+||+.-. +
T Consensus 279 ~~~~alGl~~~~--~~~~---------~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~-l~gkifRIGhMG~~~ 346 (383)
T COG0075 279 AGLEALGLELFA--DPER---------RSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGP-LKGKIFRIGHMGNVR 346 (383)
T ss_pred HHHHHcCCcccc--Cccc---------CCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccc-cCccEEEEecCccCC
Confidence 999988743333 1111 111123334443 23 33445667779999886532 246799999543 7
Q ss_pred hhHHHHHHHHHHhhh
Q 012785 441 DENYNLFVQRLSKIL 455 (456)
Q Consensus 441 ~e~i~~~l~~L~~~l 455 (456)
.+++..++..|..+|
T Consensus 347 ~~dv~~~l~ale~~L 361 (383)
T COG0075 347 PEDVLAALAALEAAL 361 (383)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999999888765
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-09 Score=101.73 Aligned_cols=271 Identities=14% Similarity=0.172 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec-
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA- 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~- 219 (456)
.+|++.+|++++. +.-++|+ +.--|....+..|. -||- .|...+-.+...+...+..++.-+-|.
T Consensus 219 v~LE~eLA~LHqK-------~aALlFs-SCfVANDstLftLak~lpgc----ei~SD~gNHASMI~GIrns~v~K~IFrH 286 (570)
T KOG1360|consen 219 VRLEAELADLHQK-------EAALLFS-SCFVANDSTLFTLAKKLPGC----EIFSDEGNHASMIQGIRNSRVPKHIFRH 286 (570)
T ss_pred hhHHHHHHHHhcC-------cceeeee-eeeeccchHHHHHHHHCCCc----EEeccccchHHHHHHhhhcCCcceeecc
Confidence 5667777777753 2223322 22233333333332 3666 777777777777777777776544443
Q ss_pred cCcccccc-------CCCeEEEEcCCCCCCcccch--H---HhhhcCcEEEeeecCC----CCCCCCCCCC----CCCcE
Q 012785 220 GDAKRFNK-------DGPYIELVTSPNNPDGSVRQ--S---VVNRSGGILVHDLAYY----WPQYTSITYP----ADHDL 279 (456)
Q Consensus 220 ~d~~~l~~-------~~~~~i~v~~P~NPtG~~~~--~---l~~~~~~~iI~De~y~----~~~~~~~~~~----~~~~i 279 (456)
-|.+.++. .-+|+|-..+.+.-+|.+.+ + ++++||.+.+.||++. ++.-.++... ..-+|
T Consensus 287 ND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDi 366 (570)
T KOG1360|consen 287 NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDI 366 (570)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhh
Confidence 35555532 24789989999999999977 3 6679999999999986 3433444322 23478
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
.-+|+.|+||.-| ||+.+. ..+++.++.+... .+...+|.....|.+.++.+... .=..+|+.-
T Consensus 367 IsGTLgKafGcVG---GYIAat-~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~----------eg~~lR~~h 432 (570)
T KOG1360|consen 367 ISGTLGKAFGCVG---GYIAAT-RKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSE----------EGRVLRRQH 432 (570)
T ss_pred cccchhhhccccc---ceehhh-hhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhh----------hhHHHHHHH
Confidence 8999999999887 999996 9999999988543 34456666666666666643222 123456677
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCC---CCC
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGF---SPK 431 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~---~~~ 431 (456)
+++-+++++.|.+.+.-.++.|. . .+-+.+.+ ..+.+..++.++||+|.. ..|.. ++.
T Consensus 433 qrnv~~~kq~l~~~GiPVi~~pS--H-------------IiPv~vgda~l~~~~sd~Li~~h~iYvQa-INyPTV~rG~E 496 (570)
T KOG1360|consen 433 QRNVKYVKQLLMELGIPVIPNPS--H-------------IIPVRVGDAALAKQASDILISKHNIYVQA-INYPTVARGTE 496 (570)
T ss_pred HHHHHHHHHHHHHcCCcccCCCc--c-------------eeeeeccCHHHHHHHHHHHHHhcCeEEEe-ccCCcccccce
Confidence 77888899999887643222221 1 23444433 234566678899999986 45542 677
Q ss_pred eEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 432 YVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+||.-+. +++-++.+++.|..+.
T Consensus 497 ~LRiaPTP~HT~~mm~~lv~~l~~vw 522 (570)
T KOG1360|consen 497 RLRIAPTPHHTPQMMNILVNALLDVW 522 (570)
T ss_pred eeecCCCCCCCHHHHHHHHHHHHHHH
Confidence 89998654 7888888888887664
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-08 Score=93.09 Aligned_cols=268 Identities=14% Similarity=0.110 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec---
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA--- 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~--- 219 (456)
..+.+.+++|++. +.+=+|+|+.++=+++..+++++|| -|++..-.+....-.++.+|+++..++
T Consensus 64 ~~F~~dlaeFlg~--------D~~R~t~GARe~KfavMhal~~~gd----~vV~D~~aHYttyvAAEragl~v~eVp~tg 131 (382)
T COG1103 64 KDFLEDLAEFLGM--------DEVRVTAGAREAKFAVMHALCKEGD----WVVVDSLAHYTTYVAAERAGLNVAEVPNTG 131 (382)
T ss_pred HHHHHHHHHHhCC--------ceeeecccchhhHHHHHHHhccCCC----EEEEcCcchHHHHHHHHhcCCeEEecCCCC
Confidence 5677779999974 5788999999999999999999999 899988887777778888999987544
Q ss_pred -----cCcccc-------ccC---CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCc
Q 012785 220 -----GDAKRF-------NKD---GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHD 278 (456)
Q Consensus 220 -----~d~~~l-------~~~---~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~ 278 (456)
+++++. +.. .+.+.+++.|..--|...+ ++|++++++++..-+|.-. .-+.. .....+
T Consensus 132 ~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~G-rmpvs~ke~g~D 210 (382)
T COG1103 132 YPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVG-RMPVSGKEIGAD 210 (382)
T ss_pred CCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeec-cccccccccCCC
Confidence 333332 111 3678888888777787766 4999999999999999832 22221 334668
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh------------ccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL------------NTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~------------~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
++++|=.|++. +.-++|.+... +++.+.+.+.... +..|.+ +.- ++.++ . +.
T Consensus 211 FiVgSGHKsmA-As~PiGvl~~~-eE~ae~V~r~Sg~~~~~KEvellGCT~rGap-ivT-----lmASf--P------~V 274 (382)
T COG1103 211 FIVGSGHKSMA-ASAPIGVLAMS-EEWAEIVLRRSGRAFPKKEVELLGCTVRGAP-IVT-----LMASF--P------HV 274 (382)
T ss_pred EEEecCccchh-ccCCeeEEeeh-hHHHHHHHhhcccccccceeeeecccccCch-HHH-----HHhcC--H------HH
Confidence 99999999998 66799999997 8888876544311 111222 111 11110 0 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhC
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGN 416 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~ 416 (456)
.+.+++--+.+ ++.+.+.+.|++++++.......-- --.+.+..|. ..-++++.|+++
T Consensus 275 ~eRVkrWdeEv-~kaR~fv~elEkigg~~qlG~rPk~-----------HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~R 342 (382)
T COG1103 275 VERVKRWDEEV-EKARWFVAELEKIGGVKQLGERPKN-----------HDLMKFETPVFHEIAKKHKRKGYFLYEELKKR 342 (382)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhHHHhCCCCcc-----------cceeeecCchHHHHHHhCcCCceeeHHHHHhc
Confidence 22222222233 2334566677777644322111100 0012222221 234578889999
Q ss_pred CEE-eecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhhC
Q 012785 417 KIL-TRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKILS 456 (456)
Q Consensus 417 gI~-v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l~ 456 (456)
||. +.||. ..++.+|+-. +.|+++..++.++++++
T Consensus 343 gI~GI~~G~-----Tk~~K~svyGl~~Eqve~V~~afkeI~e 379 (382)
T COG1103 343 GIHGIQPGQ-----TKYFKLSVYGLSWEQVEYVVDAFKEIAE 379 (382)
T ss_pred CccccccCc-----eeEEEEEeecCCHHHHHHHHHHHHHHHH
Confidence 986 45543 6789999765 99999999999998863
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=108.11 Aligned_cols=277 Identities=16% Similarity=0.108 Sum_probs=179.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.+|+|++. ++-+++..| -......+.+|+.+|. -|+...-.+......++..|+.+.-|..
T Consensus 184 hkelE~l~A~f~g~-------e~a~vF~mG-f~TNs~~~p~l~~~gs----LIiSDelNHaSi~~GaRLSgAtiRVfkHN 251 (519)
T KOG1357|consen 184 HKELEELVARFLGV-------EDAIVFSMG-FATNSMNIPSLLGKGS----LIISDELNHASLITGARLSGATTRVFRHN 251 (519)
T ss_pred HHHHHHHHHHhcCC-------cceEEEecc-ccccccCcceeecCCc----ceeeccccchheeccccccCceEEEEecC
Confidence 47888999999975 568888888 3555667778888988 8999999999999999999988876664
Q ss_pred Ccccccc-------------CCC--eE-EEEcCCCCCCccc--chH---HhhhcCcEEEeeecCCC----CCCCC---C-
Q 012785 221 DAKRFNK-------------DGP--YI-ELVTSPNNPDGSV--RQS---VVNRSGGILVHDLAYYW----PQYTS---I- 271 (456)
Q Consensus 221 d~~~l~~-------------~~~--~~-i~v~~P~NPtG~~--~~~---l~~~~~~~iI~De~y~~----~~~~~---~- 271 (456)
|..++++ +++ ++ +++..--.--|.+ +++ +.+++..+++.||++.. +.-.+ +
T Consensus 252 dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~ 331 (519)
T KOG1357|consen 252 DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYF 331 (519)
T ss_pred CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeecc
Confidence 3333322 111 23 3333332233333 333 67889999999999983 11111 1
Q ss_pred -CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh---ccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 272 -TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL---NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 272 -~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~---~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
.+..+-+|++++|+|++|..| ||+.++ +++++.++..... .+.-.+++.|.. ...++.+... ...
T Consensus 332 g~d~~dvDImMGtftKSfga~G---Gyiags-k~lid~lrt~s~~~~yat~~sppvaqq~-~ssl~~i~G~------dgt 400 (519)
T KOG1357|consen 332 GVDPEDVDIMMGTFTKSFGAAG---GYIAGS-KELIDYLRTPSPSALYATSLSPPVAQQI-LTSVKHIMGE------DGT 400 (519)
T ss_pred CCCchhheeecceehhhccccc---ceecCc-HHHHhhhccCCCceeecccCChHHHHHH-HHHHHhhcCC------Ccc
Confidence 244567899999999999887 999996 9999887765332 233344555554 3444444332 125
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG 427 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg 427 (456)
+.-++..++++++..+++..|+..+.+......... .-+.+-.+.-...+.+.+.+++|.++-+ .|.
T Consensus 401 ~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpV------------vplll~~~~k~~~f~r~~l~~nigvVvv-gfP 467 (519)
T KOG1357|consen 401 NRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPV------------VPLLLYGPAKIVAFSREMLERNIGVVVV-GFP 467 (519)
T ss_pred cHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCc------------ceeeecCcccccHHHHHHHhcCceEEEE-eCC
Confidence 677788889999999999998876643222111110 0133333333445566666777766543 243
Q ss_pred C---CCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 428 F---SPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 428 ~---~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
. -+...|++.+. +.|+++.+++.+.++
T Consensus 468 atpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 468 ATPLLESRARFCLSASHTKEDLDRALEVIDRV 499 (519)
T ss_pred CchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence 2 35678888875 889999998877653
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-07 Score=93.41 Aligned_cols=251 Identities=17% Similarity=0.156 Sum_probs=148.6
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----------hhcCCeEeeeccCcc-------cccc---
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----------DCVKSRLYKWAGDAK-------RFNK--- 227 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----------~~~g~~~~~~~~d~~-------~l~~--- 227 (456)
-.-++++|...++.+|++||| +|+..++...++...- .....+.+.+++|.+ .+++
T Consensus 91 qp~SGs~An~av~~aLl~pGD----~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~ 166 (399)
T PF00464_consen 91 QPHSGSQANLAVYMALLKPGD----TIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAK 166 (399)
T ss_dssp --SSHHHHHHHHHHHHT-TT-----EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHH
T ss_pred ecCCchHHHHHHHHHHHhhcC----cEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHh
Confidence 355666899999999999999 9999998876654321 112345566666532 2222
Q ss_pred -CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCC------CCCCCCCCCCCCcEEEecCccccCCCCceEEE
Q 012785 228 -DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW------PQYTSITYPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~------~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
.+|++|++..-..|-=.-+. ++|++.|.+++.|-++.- ....|++ .-+|+.+|..|+| +|=|-|.
T Consensus 167 ~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~---~ADvvt~sThKtl--~GPrggi 241 (399)
T PF00464_consen 167 EHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP---YADVVTGSTHKTL--RGPRGGI 241 (399)
T ss_dssp HH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC---TSSEEEEESSGGG---SSS-EE
T ss_pred hcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccc---cceEEEeeccccc--cccCceE
Confidence 38899988554444333333 489999999999999862 2223342 2469999999997 6667899
Q ss_pred EEEe-------------CHHHHHHHHHHHhhccCcCChHHHHHHH-HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 298 ALVK-------------DMEVAKKMTKYIELNTIGVSKDSQLRAA-KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 298 l~~~-------------~~~~~~~l~~~~~~~~~~~s~~~q~~a~-~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
++++ ++++.+++.+.......+.+.....++. ..|.... ...++...+++.++.+.
T Consensus 242 I~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~----------~~~fk~Ya~qVv~NAk~ 311 (399)
T PF00464_consen 242 ILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEAL----------SPEFKEYAKQVVKNAKA 311 (399)
T ss_dssp EEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHT----------SHHHHHHHHHHHHHHHH
T ss_pred EEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhccc----------CHHHHHHHHHHHHHHHH
Confidence 9986 4899999988865444444444444333 2233111 23456777888899999
Q ss_pred HHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeec----CCCCCCCCCeEEEE
Q 012785 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRS----GKHFGFSPKYVRIS 436 (456)
Q Consensus 364 l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~p----g~~fg~~~~~iRis 436 (456)
|.+.|.+.+ +.+.. |+ .+...+|+++.. +...+.+.|++.||.+.. +..=...+..|||+
T Consensus 312 La~~L~~~G-~~v~~--gg----------Td~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlG 378 (399)
T PF00464_consen 312 LAEALQERG-FKVVT--GG----------TDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLG 378 (399)
T ss_dssp HHHHHHHTT--EEGG--GS-----------SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEE
T ss_pred HHHHHhhCC-cEEEE--CC----------CCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEEC
Confidence 999999876 44432 11 122358889853 567899999999999864 32111135689999
Q ss_pred ec------CChhHHHHHHHH
Q 012785 437 ML------DRDENYNLFVQR 450 (456)
Q Consensus 437 ~~------~~~e~i~~~l~~ 450 (456)
.. ..+++++++.+.
T Consensus 379 T~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 379 TPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp SHHHHHTT--HHHHHHHHHH
T ss_pred CHHHHhCCCCHHHHHHHHhh
Confidence 54 267777776554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=96.31 Aligned_cols=261 Identities=15% Similarity=0.104 Sum_probs=163.1
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh---------hhcCC--eEeeecc-------Cccccc
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT---------DCVKS--RLYKWAG-------DAKRFN 226 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~---------~~~g~--~~~~~~~-------d~~~l~ 226 (456)
+|-.- +++.|..+++.+|++||| +|+..+..+.++.... ...|. +.+++.. |.+.++
T Consensus 217 NVQp~-SGs~AN~aV~~ALl~PGD----~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~le 291 (586)
T PLN02271 217 NVQPY-SCTSANFAVYTGLLLPGD----RIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLE 291 (586)
T ss_pred ceeec-cHHHHHHHHHHHhcCCCC----EEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHH
Confidence 55555 455888889999999999 9999988887765532 22343 3334444 334443
Q ss_pred c----CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCCCCC-CC-CCC-CCCCcEEEecCccccCCCCceEE
Q 012785 227 K----DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYWPQY-TS-ITY-PADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 227 ~----~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~~~~-~~-~~~-~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
+ .++++|++..-.||.-.-+. ++|+++|+++++|.++.-.-. .. .+. ...-+++.+|..|++ .|=|-|
T Consensus 292 k~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtL--rGPrGG 369 (586)
T PLN02271 292 EKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSL--RGPRGG 369 (586)
T ss_pred HHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccC--CCCCce
Confidence 3 37899998766788444444 489999999999999873111 00 111 123579999999987 334458
Q ss_pred EEEEeCH-------------------HHHHHHHHHHhhccCcCChHHHH-HHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 297 WALVKDM-------------------EVAKKMTKYIELNTIGVSKDSQL-RAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 297 ~l~~~~~-------------------~~~~~l~~~~~~~~~~~s~~~q~-~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
.++..+. ++.+++.........+.+..... +.+..++.... .+ ++...++
T Consensus 370 ~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~---------~e-fk~Ya~Q 439 (586)
T PLN02271 370 IIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVAT---------PE-YKAYMQQ 439 (586)
T ss_pred EEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhC---------hH-HHHHHHH
Confidence 8887521 35555555443222233333332 22233332111 23 3567778
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCC----CC
Q 012785 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFG----FS 429 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg----~~ 429 (456)
+.++.+.|.+.|.+.+ +.+.. |+ .+...+|+++.. +...+.+.|.+.||.+..-..++ ..
T Consensus 440 Vv~NAkaLA~~L~~~G-~~vv~--gg----------TdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~ 506 (586)
T PLN02271 440 VKKNAQALASALLRRK-CRLVT--GG----------TDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTIS 506 (586)
T ss_pred HHHHHHHHHHHHHHCC-CeEee--CC----------CCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCC
Confidence 8889999999998876 44332 21 112257888853 57889999999999985433332 14
Q ss_pred CCeEEEEec------CChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISML------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~------~~~e~i~~~l~~L~~~l 455 (456)
++.|||... ..++++++..+.|.+++
T Consensus 507 psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~ 538 (586)
T PLN02271 507 PGGVRIGTPAMTSRGCLESDFETIADFLLRAA 538 (586)
T ss_pred CCcccccCHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 678999953 26788888877777664
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.4e-08 Score=94.85 Aligned_cols=258 Identities=14% Similarity=0.092 Sum_probs=160.9
Q ss_pred eEEEccCHHHHHHHHHHHhc-CCCCCCCcEEEEeCCCCCCh-h-hhhhhcCC-eEeeec------cCccccccCCCeEEE
Q 012785 165 HIVVGTGSTQLFQAALYALS-SQDASEPISVVSAAPYYSSY-P-SITDCVKS-RLYKWA------GDAKRFNKDGPYIEL 234 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~P~y~~~-~-~~~~~~g~-~~~~~~------~d~~~l~~~~~~~i~ 234 (456)
-++++.|++.++++++..++ ++|+ +|++.. .|... . .+++..|+ ++..+. .|.+.++..+ .++
T Consensus 60 v~~l~GsGT~a~Eaa~~nl~~~~g~----~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~~~--~v~ 132 (374)
T TIGR01365 60 IGIVPASDTGAVEMALWSMLGCRGV----DVLAWE-SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDFKN--DVV 132 (374)
T ss_pred EEEECCchHHHHHHHHHHcCCCCCC----eEEEEC-HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCCCC--CEE
Confidence 36679999999999999998 4788 888865 55544 4 77888888 344332 2444554322 233
Q ss_pred EcCCCCCCcccch--HHhhh-cCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH
Q 012785 235 VTSPNNPDGSVRQ--SVVNR-SGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK 311 (456)
Q Consensus 235 v~~P~NPtG~~~~--~l~~~-~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~ 311 (456)
++..-=.||+..+ +++++ ++.++|+|-+=.-. -.++. ..+-++++.|--|.++.|+ -+++++++ ++..+++..
T Consensus 133 ~vhnETSTGv~npv~~i~~~~~~~lliVDavSs~g-~~~l~-~d~iDv~~tgsQK~L~~pp-Gls~v~vs-~~Al~~~~~ 208 (374)
T TIGR01365 133 FTWNGTTSGVRVPNGDFIPADREGLTICDATSAAF-AQDLD-YHKLDVVTFSWQKVLGGEG-AHGMLILS-PRAVARLES 208 (374)
T ss_pred EecCCCchheeccccccccccCCCcEEEEccchhc-CCCCC-hhHCcEEEEechhccCCCC-ceEEEEEC-HHHHHHHhh
Confidence 3332234577766 35554 68999999865421 12221 1236799999999997554 26778886 766666542
Q ss_pred H----------------------H-hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012785 312 Y----------------------I-ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV 368 (456)
Q Consensus 312 ~----------------------~-~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L 368 (456)
. . ..+...++....+++..+|+.+.+. .-++...++.+++.+.+++.+
T Consensus 209 ~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~e---------gGle~~~~Rh~~~a~~l~~~l 279 (374)
T TIGR01365 209 YTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESI---------GGLKPLIARADDNLAVLEAFV 279 (374)
T ss_pred cCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHHHH
Confidence 1 0 1122233334444445555433221 137788899999999999999
Q ss_pred HhcCCccccCCCCcccccccccCCCCCceEEeecCc--------c-----HHHHHHHHHhCCEEeecCCCCCCCCCeEEE
Q 012785 369 QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------E-----IEDCESFLKGNKILTRSGKHFGFSPKYVRI 435 (456)
Q Consensus 369 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~-----~~~~~~~l~~~gI~v~pg~~fg~~~~~iRi 435 (456)
++++.+.+....... .+. .-..+.+++ + .+.+.+.++++||.+.+|..-- .+..|||
T Consensus 280 ~~lg~l~~~~~~~~~--------rS~-tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~-~~~~fRI 349 (374)
T TIGR01365 280 AKNNWIHFLAETPEI--------RSN-TSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRD-APSGLRI 349 (374)
T ss_pred HHCCCcccCCCChhh--------cCC-CeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEecccccc-CCCceEE
Confidence 998744433321111 111 123334422 2 4678889999999999876432 3588999
Q ss_pred EecC--ChhHHHHHHHHHH
Q 012785 436 SMLD--RDENYNLFVQRLS 452 (456)
Q Consensus 436 s~~~--~~e~i~~~l~~L~ 452 (456)
+--. +.++++.+++.|.
T Consensus 350 g~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 350 WCGATVEKSDLECLCPWLD 368 (374)
T ss_pred ecCCcCCHHHHHHHHHHHH
Confidence 9543 8999999998875
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-08 Score=97.70 Aligned_cols=261 Identities=8% Similarity=-0.020 Sum_probs=165.9
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeee---------ccCccccccC-CCeE
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKW---------AGDAKRFNKD-GPYI 232 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~---------~~d~~~l~~~-~~~~ 232 (456)
-+++..|++.+++.++..|..+|+ ++++..-++.+ ....++.+|...+-. ..|.+.++.. +.+.
T Consensus 73 v~~l~Gsgt~~~ea~~~nl~~~~~----~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (365)
T PLN02452 73 VLFLQGGASTQFAAIPLNLCKPGD----KADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWELTPDAKF 148 (365)
T ss_pred EEEEeCccHHHHHHHHHhcCCCCC----eEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCCCCCCcE
Confidence 456778999999999999999988 77777655554 345666677543322 1233344332 3455
Q ss_pred EEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH
Q 012785 233 ELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY 312 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~ 312 (456)
+.++.-.=.||+.+..+-+-.++++|+|-+..-.+ .++. ..+-.+...|.-|.+|.+| +|.++++ +++.+++...
T Consensus 149 v~~~hnETstGv~~~~~~~i~~~~lvVDa~Ss~g~-~pid-v~~~~v~~~saqK~lGP~G--l~~v~vr-~~~l~~~~~~ 223 (365)
T PLN02452 149 VHICANETIHGVEFKDYPDVGNVPLVADMSSNFLS-KPVD-VSKYGVIYAGAQKNVGPSG--VTIVIIR-KDLIGNARPI 223 (365)
T ss_pred EEECCCCCCCcEecCcccccCCCeEEEECCccccC-cccC-HHHcCEEEEecccccCCCC--eEEEEEc-HHHHhhcccC
Confidence 55544334668865543222248999998876322 2221 1122244579999999999 7889997 7777654321
Q ss_pred -------Hh-----hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 313 -------IE-----LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 313 -------~~-----~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
.. .+...++....+++.++|+.+.+. .-++.+.++.+++.+++++.|++..++......
T Consensus 224 ~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~---------gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~ 294 (365)
T PLN02452 224 TPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQ---------GGLKAMEKRNIRKADLLYDAIDESNGFYVCPVE 294 (365)
T ss_pred CCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 10 011355666677777778765431 137788899999999999999986544111111
Q ss_pred CcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
... . +..-+-+.+++ ..+.+.+.++++|+...+|..- -+.+|+|+-. +.|+++.+++.++++-
T Consensus 295 ~~~--------r-s~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~---~gg~R~s~yna~~~~~v~~L~~~m~~f~ 361 (365)
T PLN02452 295 KSV--------R-SLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRS---VGGMRASIYNAMPLAGVEKLVAFMKDFQ 361 (365)
T ss_pred hHH--------h-CCeEEEEEcCCchhHHHHHHHHHHCCCcccCCccc---cCceEEECcCCCCHHHHHHHHHHHHHHH
Confidence 000 0 11123444543 4677889999999999998754 2229999754 8999999999998863
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.4e-08 Score=106.26 Aligned_cols=270 Identities=11% Similarity=0.073 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc-CCC--CCCCcEEEEeCCCCCChhhhh----hhcCCeEe
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS-SQD--ASEPISVVSAAPYYSSYPSIT----DCVKSRLY 216 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~g--d~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~ 216 (456)
++++.++++.+. +..++.+..+++.+.+.++.++. .++ + +|++++-.|+...... +..|++++
T Consensus 125 ~~Qt~la~LtG~------~~anaSl~d~aTAa~ea~~~a~~~~~~~~~----~vlv~~~~hP~~~~v~~t~a~~~G~ev~ 194 (954)
T PRK05367 125 NFQTMVADLTGL------EIANASLLDEATAAAEAMALAKRVSKSKSN----RFFVDDDVHPQTLDVLRTRAEPLGIEVV 194 (954)
T ss_pred HHHHHHHHHHCC------ChhhccccccHHHHHHHHHHhhhhccCCCC----EEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence 455556666654 45689999999999998887763 333 6 9999999999877653 55799988
Q ss_pred eeccCccccccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccc----
Q 012785 217 KWAGDAKRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKS---- 287 (456)
Q Consensus 217 ~~~~d~~~l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~---- 287 (456)
.++.+.+ ++..++..+++.+| |-+|.+.+ ++|+++|+++++|-...-......+...+-+|+++|.-|.
T Consensus 195 ~~~~~~d-~~~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~ 272 (954)
T PRK05367 195 VGDAAKA-LDHDDVFGVLLQYP-GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPM 272 (954)
T ss_pred EecCccC-CCcccEEEEEEecC-CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCC
Confidence 8776442 33334556667676 56899976 3678899999998644221111123445668999999996
Q ss_pred -cCCCCceEEEEEEeCHHHHHHHHHH-Hhh----------------------ccCcCChHH-HHHHHHHHHhhhCCCCCC
Q 012785 288 -TGHAGTRIGWALVKDMEVAKKMTKY-IEL----------------------NTIGVSKDS-QLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 288 -~g~~G~RiG~l~~~~~~~~~~l~~~-~~~----------------------~~~~~s~~~-q~~a~~~L~~~~~~~~~~ 342 (456)
||-|| .|++.+. +++...+... ... ..-+.|.+. ..++.+++..+--.+
T Consensus 273 g~GGP~--aGflavr-~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~--- 346 (954)
T PRK05367 273 GFGGPH--AAYFAVR-DAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVY--- 346 (954)
T ss_pred CCCCCC--EEEEEEC-HHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHH---
Confidence 66676 8999997 7666655211 000 001111111 111111111100000
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS 422 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p 422 (456)
+...-++++.++...+..++.+.|+..+ +++..+ .+ |+ -+.++++.+.+++.+.|.++||.++.
T Consensus 347 --~g~~Gl~~Ia~~~~~la~~l~~~L~~~G-~~~~~~--~~---f~--------~~~~~~~~~~~~i~~~l~~~gi~~~~ 410 (954)
T PRK05367 347 --HGPEGLKAIARRVHRLAAILAAGLRALG-LEVVHD--SF---FD--------TLTVEVGGDAAAVLARALAAGINLRR 410 (954)
T ss_pred --HhhhhHHHHHHHHHHHHHHHHHHHHhcC-cccCCC--CC---CC--------eEEEeCCCCHHHHHHHHHHCCceecc
Confidence 0134567777888888888888887643 443321 11 11 23445544677899999999999843
Q ss_pred CCCCCCCCCeEEEEecC--ChhHHHHHHHHHH
Q 012785 423 GKHFGFSPKYVRISMLD--RDENYNLFVQRLS 452 (456)
Q Consensus 423 g~~fg~~~~~iRis~~~--~~e~i~~~l~~L~ 452 (456)
..++.+|+|+.- ++++++.+++.|.
T Consensus 411 -----~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 411 -----VDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -----ccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 125689999864 8899999999986
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.7e-08 Score=104.54 Aligned_cols=272 Identities=12% Similarity=0.075 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc-CCC--CCCCcEEEEeCCCCCChhhhhh----hcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS-SQD--ASEPISVVSAAPYYSSYPSITD----CVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~g--d~~~~~Vlv~~P~y~~~~~~~~----~~g~~~ 215 (456)
.+++..|+++.+. +.+++.++.|++.+.++++.++. .+| + +|++++-.|+.+....+ ..|+++
T Consensus 151 ~~~Qt~ia~LtG~------~~anaSL~d~aTAaaea~~~a~~~~~g~~~----~VlVs~~~hP~~~~v~~t~a~~~GieV 220 (993)
T PLN02414 151 LNYQTMITDLTGL------PMSNASLLDEGTAAAEAMAMCNNILKGKKK----KFLIASNCHPQTIDVCQTRADGLGLEV 220 (993)
T ss_pred HHHHHHHHHHhCC------ChhhEeecCChHHHHHHHHHHHhcccCCCC----EEEEcCccCHhHHHHHHHhhhhcCCEE
Confidence 3566667777764 56799999999999998887763 333 4 89999999998876654 358888
Q ss_pred eeeccCccccccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCC--CCCCCCcEEEecCcccc
Q 012785 216 YKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSI--TYPADHDLMLFTVSKST 288 (456)
Q Consensus 216 ~~~~~d~~~l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~--~~~~~~~i~i~S~SK~~ 288 (456)
+.++.+......+....+++.+|+ -+|.+.+ ++|+++|+++|+ -+.. .+..++ +...+-+|++++--|..
T Consensus 221 ~~v~~~~~~~~~~~v~~vlvq~P~-~~G~v~dv~~I~~~ah~~GaL~iV-aad~-lal~~l~~pge~GADi~vgsgqKwg 297 (993)
T PLN02414 221 VVADEKDFDYSSGDVCGVLVQYPA-TDGEVLDYAEFVKNAHANGVKVVM-ATDL-LALTMLKPPGEWGADIVVGSAQRFG 297 (993)
T ss_pred EEecchhhccccCceEEEEEecCC-CCeEEcCHHHHHHHHHHcCCEEEE-EECH-HHhcCCCCHhhccCcEEEECCCccc
Confidence 877764321222233344554553 3899977 378889999998 3322 122222 23345689999988865
Q ss_pred C---CCCceEEEEEEeCHHHHHHHHH-HHhh----------------------ccCcCChH-HHHHHHHHHHhhhCCCCC
Q 012785 289 G---HAGTRIGWALVKDMEVAKKMTK-YIEL----------------------NTIGVSKD-SQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 289 g---~~G~RiG~l~~~~~~~~~~l~~-~~~~----------------------~~~~~s~~-~q~~a~~~L~~~~~~~~~ 341 (456)
+ ..|=+.|++.+. +++...+-. .... ...+.+.+ +..++.+.+..+.-.+
T Consensus 298 ~P~G~GGP~aGflavr-~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~-- 374 (993)
T PLN02414 298 VPMGYGGPHAAFLATS-QEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY-- 374 (993)
T ss_pred cCCCCCCCCeeEEEEC-HHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHH--
Confidence 1 123348999997 666553320 1000 00122222 2222223232110000
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEee
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTR 421 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~ 421 (456)
+...-++++.+++.++..++.+.|+..+ +++..+ .+ |+ -+.++++ +.+.+.+.|.++||.++
T Consensus 375 ---~g~~Gl~~Ia~ri~~la~~l~~~L~~~G-~~~~~~--~~---f~--------~vt~~~~-~~~~v~~~L~~~gI~l~ 436 (993)
T PLN02414 375 ---HGPEGLKTIAQRVHGLAGVFAAGLKKLG-FQVQSL--PF---FD--------TVKVKCS-DADAIADAAAKVGINLR 436 (993)
T ss_pred ---hccccHHHHHHHHHHHHHHHHHHHhhcC-CccCCC--CC---cC--------eEEEecC-CHHHHHHHHHHCCCeeE
Confidence 0123466777888888888888887754 444322 11 11 2344554 44778889999999776
Q ss_pred cCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHh
Q 012785 422 SGKHFGFSPKYVRISMLD--RDENYNLFVQRLSK 453 (456)
Q Consensus 422 pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~ 453 (456)
.. ..+.+|+|+.- ++++|+.+++.|..
T Consensus 437 ~~-----~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 437 VV-----DANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred Ee-----cCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 52 25679999864 88999999999863
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-10 Score=95.74 Aligned_cols=103 Identities=16% Similarity=0.373 Sum_probs=72.7
Q ss_pred cCCCCeEEecCCCCCCCch---hHhhhcccc-----cccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hc--Cc
Q 012785 91 DGGERIINVDHGDPTMYEK---YWQKVGDKT-----TIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VG--NA 159 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~---~~~~~~~~~-----~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g--~~ 159 (456)
.++.++|+|+..++.+... .|+.+.... ..+.........|++..| .++||+++|+|+.+ +| ..
T Consensus 40 ~np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~a~Y~~~~G-----~~~lR~AiA~~l~~~~g~~v~ 114 (153)
T PLN02994 40 HNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDIALFQDYHG-----LANFRKAIANFMAEARGGRVK 114 (153)
T ss_pred cCCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcCCCCCC-----cHHHHHHHHHHHHHHhCCCCc
Confidence 4567899999988754322 222221000 000101111245888899 59999999999955 56 34
Q ss_pred cCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC
Q 012785 160 ITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS 203 (456)
Q Consensus 160 ~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~ 203 (456)
+ ++++|++|+|++++++.++.+|+++|| .|++++|+|+.
T Consensus 115 ~-~pd~Ivvt~Ga~~al~~l~~~l~dpGD----~VlVp~P~Y~~ 153 (153)
T PLN02994 115 F-DADMIVLSAGATAANEIIMFCIADPGD----AFLVPTPYYAA 153 (153)
T ss_pred c-chhheEEcCCHHHHHHHHHHHHcCCCC----EEEEeCCCCCC
Confidence 4 457999999999999999999999999 99999999974
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=101.38 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
-.+..+..|+.++. .+-.+++||+|.++.+++.+++.+|| +|+++.-++-.....+...|++++.+..
T Consensus 207 I~eAq~~aA~~fgA-------~~t~FlvNGST~gn~a~i~a~~~~gd----~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~ 275 (755)
T PRK15029 207 FGESEKYAARVFGA-------DRSWSVVVGTSGSNRTIMQACMTDND----VVVVDRNCHKSIEQGLILTGAKPVYMVPS 275 (755)
T ss_pred HHHHHHHHHHHhCC-------CcEEEEeCChhHHHHHHHHHhcCCCC----EEEeecccHHHHHHHHHHcCCeEEEeccc
Confidence 35666777777763 46788999999999999999999999 9999999999999999999999875432
Q ss_pred ----------C-----cccccc-------------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC--
Q 012785 221 ----------D-----AKRFNK-------------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-- 265 (456)
Q Consensus 221 ----------d-----~~~l~~-------------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-- 265 (456)
+ .+.++. .+++++++++|+. .|.+.+ ++|+++++++++||||+.
T Consensus 276 ~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 276 RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred ccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence 1 222211 1234888888765 488766 478899999999999984
Q ss_pred ---CCCC---CCCC---C-CCCc-EEEecCccccCCCCceEE-EEEEeCH--HH-HHHHHHHHh
Q 012785 266 ---PQYT---SITY---P-ADHD-LMLFTVSKSTGHAGTRIG-WALVKDM--EV-AKKMTKYIE 314 (456)
Q Consensus 266 ---~~~~---~~~~---~-~~~~-i~i~S~SK~~g~~G~RiG-~l~~~~~--~~-~~~l~~~~~ 314 (456)
+.++ ++.. . .+-+ +++.|..|++ |++.-| ++.+.+. .+ .++++....
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv~~~~~~id~~r~~~~l~ 416 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYM 416 (755)
T ss_pred ccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhhheeCCCccccCHHHHHHHHH
Confidence 1121 1200 1 2334 8999999986 556554 5555322 12 245655544
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-07 Score=100.51 Aligned_cols=325 Identities=10% Similarity=0.056 Sum_probs=179.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccC---CCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEE-E
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD---VRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIV-V 168 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~-~ 168 (456)
..+|.||.....+++. ...... ..+++...+-|.+ .+| ..++...+.+|+. ..|. +++. .
T Consensus 499 ~~~i~lGsct~~~~p~--~~~~~~---~~~~f~~~hP~qp~e~~qG-----~l~~i~e~q~~l~eltG~-----d~~sl~ 563 (954)
T PRK05367 499 RSMIPLGSCTMKLNAA--AEMIPI---TWPEFANLHPFAPAEQAAG-----YRELIDQLEAWLAEITGY-----DAVSLQ 563 (954)
T ss_pred cceeeCCcCCCcCCHH--HHHHHH---hCccccccCCCChHHHHHH-----HHHHHHHHHHHHHHHHCC-----CCEEEC
Confidence 4578888866555533 222111 2233422222333 123 2344444555552 2342 2344 4
Q ss_pred ccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc------ccc----c--CCCeE
Q 012785 169 GTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK------RFN----K--DGPYI 232 (456)
Q Consensus 169 t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~------~l~----~--~~~~~ 232 (456)
.+|++++....+.++. .+|+..+.+|++++-.|......+...|++++.++.|.+ .++ . .++.+
T Consensus 564 ~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~ 643 (954)
T PRK05367 564 PNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAA 643 (954)
T ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEE
Confidence 5566666644443333 455532337999999998888888999999988776542 332 2 14577
Q ss_pred EEEcCCCCCCccc--ch---HHhhhcCcEEEeeecCCCC--CCCCCCCCCCCcEEEecCccccCCC----CceEEEEEEe
Q 012785 233 ELVTSPNNPDGSV--RQ---SVVNRSGGILVHDLAYYWP--QYTSITYPADHDLMLFTVSKSTGHA----GTRIGWALVK 301 (456)
Q Consensus 233 i~v~~P~NPtG~~--~~---~l~~~~~~~iI~De~y~~~--~~~~~~~~~~~~i~i~S~SK~~g~~----G~RiG~l~~~ 301 (456)
|++++|++-.+.. +. ++|+++|+++++|.++... .+. .+...+-+++.+|..|.|+.| |=-+|.+.+.
T Consensus 644 V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~-~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr 722 (954)
T PRK05367 644 IMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLA-RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVK 722 (954)
T ss_pred EEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCC-ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeec
Confidence 8888888753322 23 3678899999999998632 111 112345689999999987422 2227888886
Q ss_pred CHHHHHHHHHHH-----h---hccCcCChHHHHH----HHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 012785 302 DMEVAKKMTKYI-----E---LNTIGVSKDSQLR----AAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQ 369 (456)
Q Consensus 302 ~~~~~~~l~~~~-----~---~~~~~~s~~~q~~----a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 369 (456)
+++...+-... . ..+...++..|.. +...+.. -| .+-+++..+..-.+.+++.+.|+
T Consensus 723 -~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~--~G--------~~Glr~~a~~~~~~A~Yl~~~L~ 791 (954)
T PRK05367 723 -AHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRM--MG--------AEGLRQATEVAILNANYIAKRLK 791 (954)
T ss_pred -ccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHH--HC--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443332110 0 0122223332222 1222221 12 44555555555578888888887
Q ss_pred hcCCccccCCCCcccccccccCCCCCceEEeecC----ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhH
Q 012785 370 KSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDEN 443 (456)
Q Consensus 370 ~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~ 443 (456)
+.-.+.+..+.+... ....+-+..++ ...+++.+.|.++|+.... ..|. ..+.+||+.+- ++++
T Consensus 792 ~~~~~~~~~~~~~~~--------~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t-~~~p-v~~~l~i~ptE~~s~~e 861 (954)
T PRK05367 792 DHYPVLYTGANGRVA--------HECILDLRPLKESTGITVDDIAKRLIDYGFHAPT-MSFP-VAGTLMVEPTESESKAE 861 (954)
T ss_pred hhcCccccCCCCCcc--------cceEEEeecccccCCCCHHHHHHHHHHCCCeEee-cCCc-cCCEEEEEeeecCCHHH
Confidence 642222222222110 01112222222 2457788889999998765 3354 36788888763 8899
Q ss_pred HHHHHHHHHhhh
Q 012785 444 YNLFVQRLSKIL 455 (456)
Q Consensus 444 i~~~l~~L~~~l 455 (456)
++.+++.|+++.
T Consensus 862 lDr~~~al~~i~ 873 (954)
T PRK05367 862 LDRFCDAMIAIR 873 (954)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-06 Score=84.68 Aligned_cols=260 Identities=18% Similarity=0.153 Sum_probs=167.0
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh---hcC--CeEeeeccCcc-------cccc----C
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD---CVK--SRLYKWAGDAK-------RFNK----D 228 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~---~~g--~~~~~~~~d~~-------~l~~----~ 228 (456)
+|-..+|+ +|...++.+|.+||| +|+-.+-...++..-.. ..| .+.+.+++|.+ .+++ .
T Consensus 91 nVQPhSGs-~AN~av~~All~pGD----timgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~ 165 (413)
T COG0112 91 NVQPHSGS-QANQAVYLALLQPGD----TIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEV 165 (413)
T ss_pred ccCCCCch-HHHHHHHHHHcCCCC----eEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHh
Confidence 56666776 777888899999999 99988887777654331 122 24456666543 2222 3
Q ss_pred CCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCC------CCCCCCCCCCCCcEEEecCccccCCCCceEEEEE
Q 012785 229 GPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW------PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWAL 299 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~------~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~ 299 (456)
+||+|+..--..|-=..+. ++|++-|.+++.|.++.- ....|++ .-+|+.+|-.|+| +|=|-|.++
T Consensus 166 kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~---~AdvVTtTTHKTl--rGPrGG~Il 240 (413)
T COG0112 166 KPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP---HADVVTTTTHKTL--RGPRGGIIL 240 (413)
T ss_pred CCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC---ccceEeCCcccCC--CCCCceEEE
Confidence 8899887433333222222 489999999999998862 2223332 2579999999987 677889999
Q ss_pred EeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 012785 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL 379 (456)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 379 (456)
+.++++.+++.+.......|.+.+- .+|+.+..-- +- .+..++...+++.++.+.|.+.|.+.+ +.+..
T Consensus 241 ~~~eel~kkin~aVFPg~qggpl~H-viAakaVa~~-Ea-------l~p~fk~Ya~qVv~NAkaLAe~l~~~G-~~vvs- 309 (413)
T COG0112 241 TNDEELAKKINSAVFPGLQGGPLMH-VIAAKAVAFK-EA-------LEPEFKEYAKQVVKNAKALAEALKERG-FKVVS- 309 (413)
T ss_pred eccHHHHHHhhhhcCCccCCChHHH-HHHHHHHHHH-HH-------cChhHHHHHHHHHHHHHHHHHHHHHcC-CeEec-
Confidence 9767999999887654444444333 3322222210 11 122345566777788899999998866 44432
Q ss_pred CCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecC-CCCCC----CCCeEEEEec------CChhHHH
Q 012785 380 PSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSG-KHFGF----SPKYVRISML------DRDENYN 445 (456)
Q Consensus 380 ~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg-~~fg~----~~~~iRis~~------~~~e~i~ 445 (456)
|+- +..-+.+++.. +.+.+...|.+.||.+.-- -.|.. .+..|||... -.+++++
T Consensus 310 -GgT----------dnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~ 378 (413)
T COG0112 310 -GGT----------DNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEME 378 (413)
T ss_pred -CCc----------cceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHH
Confidence 211 11135667752 5788999999999998532 22321 3567999843 2678888
Q ss_pred HHHHHHHhhhC
Q 012785 446 LFVQRLSKILS 456 (456)
Q Consensus 446 ~~l~~L~~~l~ 456 (456)
+..+.|.++++
T Consensus 379 ~Ia~~I~~vl~ 389 (413)
T COG0112 379 EIADLIADVLD 389 (413)
T ss_pred HHHHHHHHHHh
Confidence 88888887763
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=100.93 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
-.+.++.+|+.++. .+-.++++|++.++.+++.+++.+|| +|+++.-++-.....+...|++++.++.
T Consensus 68 I~eAe~~aA~~fGA-------d~t~flvnGsT~g~~a~i~a~~~~gd----~VLv~RN~HkSv~~alil~ga~Pvyi~p~ 136 (417)
T PF01276_consen 68 IKEAEELAARAFGA-------DKTFFLVNGSTSGNQAMIMALCRPGD----KVLVDRNCHKSVYNALILSGAIPVYIPPE 136 (417)
T ss_dssp HHHHHHHHHHHHTE-------SEEEEESSHHHHHHHHHHHHHTTTTC----EEEEETT--HHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHHhcCC-------CeEEEEecCchHHHHHHHHHhcCCCC----EEEEcCCcHHHHHHHHHHcCCeEEEecCC
Confidence 46777778888874 46788999999999999999999999 9999999999999999999999875432
Q ss_pred ----------Cc-----ccccc-----CCC---eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC-CCCCCC
Q 012785 221 ----------DA-----KRFNK-----DGP---YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-PQYTSI 271 (456)
Q Consensus 221 ----------d~-----~~l~~-----~~~---~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-~~~~~~ 271 (456)
+. +.++. ... +++++++|+. .|.+.+ ++|+++++.|++||||.. ..|.++
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~l 215 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPL 215 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGG
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCC
Confidence 22 22211 122 4488888765 488876 478899999999999984 122222
Q ss_pred C-----CCC-----CCcEEEecCccccCCCCce-EEEEEEeCHH--HHHHHHHHHh
Q 012785 272 T-----YPA-----DHDLMLFTVSKSTGHAGTR-IGWALVKDME--VAKKMTKYIE 314 (456)
Q Consensus 272 ~-----~~~-----~~~i~i~S~SK~~g~~G~R-iG~l~~~~~~--~~~~l~~~~~ 314 (456)
+ ... ..++++.|..|++ +++. -+++.+.+.. -.+++++...
T Consensus 216 p~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~ 269 (417)
T PF01276_consen 216 PRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALS 269 (417)
T ss_dssp GTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHH
T ss_pred ccchhhccCccccccceeeeechhhcc--cccccceEEEecCCCcccHHHHHHHHH
Confidence 2 111 1359999999986 5554 5677776443 2466666544
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-06 Score=79.33 Aligned_cols=263 Identities=15% Similarity=0.114 Sum_probs=168.3
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCC-CCCC-hhhhhhhcCCeEeeeccCc----------cccccCCCeE
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAP-YYSS-YPSITDCVKSRLYKWAGDA----------KRFNKDGPYI 232 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P-~y~~-~~~~~~~~g~~~~~~~~d~----------~~l~~~~~~~ 232 (456)
-.++...++.+.+.++.-++.||| +|++-.- .|.. ...+.+..|+++..++.|. +++..+++++
T Consensus 70 tf~isgsGh~g~E~al~N~lePgd----~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~ 145 (385)
T KOG2862|consen 70 TFVISGSGHSGWEAALVNLLEPGD----NVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKA 145 (385)
T ss_pred eEEEecCCcchHHHHHHhhcCCCC----eEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCce
Confidence 455555566889999999999999 7776654 4443 5568888999988776653 2334468899
Q ss_pred EEEcCCCCCCcccch------HHhhhcCcEEEeeecCCCCCCCCC-CCCCCCcEEEecCccccCC-CCceEEEEEEeCHH
Q 012785 233 ELVTSPNNPDGSVRQ------SVVNRSGGILVHDLAYYWPQYTSI-TYPADHDLMLFTVSKSTGH-AGTRIGWALVKDME 304 (456)
Q Consensus 233 i~v~~P~NPtG~~~~------~l~~~~~~~iI~De~y~~~~~~~~-~~~~~~~i~i~S~SK~~g~-~G~RiG~l~~~~~~ 304 (456)
++++.-..-||+.-+ ++|++|+.++++|-+-+- +-+++ .+...-++....--|.+|. +|+-+ +..+ +.
T Consensus 146 vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSl-ggt~F~mDewgVDvaytgSQKaL~aP~GLsi--isfS-~k 221 (385)
T KOG2862|consen 146 VFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASL-GGTEFEMDEWGVDVAYTGSQKALGAPAGLSI--ISFS-DK 221 (385)
T ss_pred EEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhc-CCccceehhhcccEEEecchhhcCCCCCcce--eecC-HH
Confidence 999888788898876 489999999999987652 11222 2344556666666788864 46444 5554 66
Q ss_pred HHHHHHHHHhh-----------------------ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 305 VAKKMTKYIEL-----------------------NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 305 ~~~~l~~~~~~-----------------------~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
..+++++.+.. ....+|....+..-++|..+. ++-+++..++.++..
T Consensus 222 a~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~----------eeGL~~~~~rH~e~s 291 (385)
T KOG2862|consen 222 ALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIA----------EEGLENSWRRHREMS 291 (385)
T ss_pred HHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 66777665430 112344444444455554332 456778888899999
Q ss_pred HHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 362 KQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 362 ~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
+.++..|++++.--+...+ ....+.---++.|. +.+++...+..++.....|..=...+.++||.+..
T Consensus 292 ~~l~~~l~~~GLq~fv~~e----------~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~g 361 (385)
T KOG2862|consen 292 KWLKLSLEALGLQLFVVDE----------ELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLG 361 (385)
T ss_pred HHHHHHHHHhCccceecCh----------hhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEee
Confidence 9999999987531111100 00111122334443 67788877777644444333222357899999643
Q ss_pred ---ChhHHHHHHHHHHhhh
Q 012785 440 ---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ---~~e~i~~~l~~L~~~l 455 (456)
+.|.++..++.|+..+
T Consensus 362 cna~~e~i~~v~~ll~~al 380 (385)
T KOG2862|consen 362 CNANVEYIDNVVELLKLAL 380 (385)
T ss_pred ccCCcHHHHHHHHHHHHHH
Confidence 7788898888887654
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-06 Score=92.78 Aligned_cols=158 Identities=9% Similarity=0.030 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD 221 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 221 (456)
..+..+.+|+.++. .+-.+++||++.++.+++.+++.+|| +|+++.-++-.....+.+.|++++.+..+
T Consensus 197 i~eAe~~aA~~fgA-------d~tyfvvNGTS~~n~av~~a~~~~Gd----~VLvdRN~HKSv~~aLilsga~PVYl~P~ 265 (713)
T PRK15399 197 HLEAEEYIARTFGA-------EQSYIVTNGTSTSNKIVGMYAAPAGS----TLLIDRNCHKSLAHLLMMSDVVPIWLKPT 265 (713)
T ss_pred HHHHHHHHHHHhCC-------CcEEEEeCChHHHHHHHHHHhcCCCC----EEEeecccHHHHHHHHHHcCCeeEEeccc
Confidence 35666667777763 45788999999999999999999999 99999999999999999999998754322
Q ss_pred -----------c-----ccccc--------CCCeEEEEcCCCCCCcccch--HHhhhcCcEE-EeeecCCC-CCCCC---
Q 012785 222 -----------A-----KRFNK--------DGPYIELVTSPNNPDGSVRQ--SVVNRSGGIL-VHDLAYYW-PQYTS--- 270 (456)
Q Consensus 222 -----------~-----~~l~~--------~~~~~i~v~~P~NPtG~~~~--~l~~~~~~~i-I~De~y~~-~~~~~--- 270 (456)
. +.++. .+++++++++|+. .|.+++ ++++.-|+.+ ++||||.. ..|.+
T Consensus 266 ~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd~~~I~~~~g~~~ilvDEAhgah~~F~p~~~ 344 (713)
T PRK15399 266 RNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQ 344 (713)
T ss_pred ccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeCHHHHHHHhCCCEEEEeccchhhhhcCcccC
Confidence 2 22211 1346888888743 588877 3555557766 59999984 12222
Q ss_pred ----CCC--CCCC-cEEEecCccccCCCCceE-EEEEEeCHHH-HHHHHHHHh
Q 012785 271 ----ITY--PADH-DLMLFTVSKSTGHAGTRI-GWALVKDMEV-AKKMTKYIE 314 (456)
Q Consensus 271 ----~~~--~~~~-~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~-~~~l~~~~~ 314 (456)
+.. ..|- ++.+.|..|++ +++.- .++.++. .+ .+++.....
T Consensus 345 ~~sam~~~~~aD~~i~~tQStHKtL--~alTQaS~iHvk~-~vd~~~~n~a~~ 394 (713)
T PRK15399 345 GKSGMSGERVPGKVIFETQSTHKML--AAFSQASLIHIKG-EYDEETFNEAFM 394 (713)
T ss_pred CcChhhCCCCCCeeeeeeeehhccc--cccchheeeeecC-CCCHHHHHHHHH
Confidence 211 1233 34499999986 55543 4565642 22 244555443
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=9e-07 Score=93.53 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..+..+.+|+.++. .+-.+++||++.++.+++.+++.+|| .|+++.-++-.....+.+.|++++.+..
T Consensus 197 i~eAe~~AA~~fgA-------d~tyfvvNGTS~~n~av~~a~~~~Gd----~VLvdRN~HKSv~haLilsga~PVYl~P~ 265 (714)
T PRK15400 197 HKEAEEYIARVFNA-------DRSYMVTNGTSTANKIVGMYSAPAGS----TVLIDRNCHKSLTHLMMMSDVTPIYFRPT 265 (714)
T ss_pred HHHHHHHHHHHhCC-------CcEEEEeCchHHHHHHHHHHhcCCCC----EEEeecccHHHHHHHHHHcCCeEEEeccc
Confidence 35667777777763 45788999999999999999999999 9999999999999999999999885432
Q ss_pred ----------C-----cccccc--------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC-----CC
Q 012785 221 ----------D-----AKRFNK--------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-----PQ 267 (456)
Q Consensus 221 ----------d-----~~~l~~--------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-----~~ 267 (456)
+ .+.++. .++..+++++|+. .|.++. ++|..++ |++||||.. +.
T Consensus 266 rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred ccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecCHHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 2 222221 1233678877743 588876 3566666 689999984 11
Q ss_pred CC---CCCC-CC--CCcEEEecCccccCCCCce
Q 012785 268 YT---SITY-PA--DHDLMLFTVSKSTGHAGTR 294 (456)
Q Consensus 268 ~~---~~~~-~~--~~~i~i~S~SK~~g~~G~R 294 (456)
+. ++.. .. +.++++.|..|++ +|+.
T Consensus 343 ~~~~sam~~ga~~~~~i~vtQStHKtL--~alT 373 (714)
T PRK15400 343 YEGKCGMSGGRVEGKVIYETQSTHKLL--AAFS 373 (714)
T ss_pred cCCcChhhcCCCCCCceEEEEchhhcc--cchh
Confidence 21 1211 11 3458899999986 4543
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-06 Score=83.79 Aligned_cols=260 Identities=12% Similarity=0.034 Sum_probs=163.5
Q ss_pred eE-EEccCHHHHHHHHHHHhcCCCCCCCcEEE--EeCCCCCC-hhhhhhhcCCeEeeec----------cCccccccC-C
Q 012785 165 HI-VVGTGSTQLFQAALYALSSQDASEPISVV--SAAPYYSS-YPSITDCVKSRLYKWA----------GDAKRFNKD-G 229 (456)
Q Consensus 165 ~I-~~t~G~~~al~~~~~~l~~~gd~~~~~Vl--v~~P~y~~-~~~~~~~~g~~~~~~~----------~d~~~l~~~-~ 229 (456)
+| +++.|++.+++.+...|+.+|+ +++ +..=.|.. +...++.+| ++.... .+.+.++.. +
T Consensus 69 ~Vlfl~GggT~~~ea~~~Nll~~g~----~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~~~~d 143 (364)
T PRK12462 69 GVVFLQGGSSLQFSMIPMNFSRPGA----AAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELDWDAR 143 (364)
T ss_pred eEEEEeccHHHHHHHHHHHcCCCCC----cEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhccCCC
Confidence 45 4566699999999999999988 665 44433332 334555555 222111 122233222 3
Q ss_pred CeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 230 PYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
.+.+.++.-.=.||+..+++.+.++.++|+|-+=.-. -.++ +..+-++++.+.=|.+|.|| ++.+++. ++..++.
T Consensus 144 ~~~v~~t~NETstGv~~~~~~~~~~~llvvD~sS~~~-s~pi-d~~~~dvi~agsQKnlgP~G--ltvvivs-~~al~~~ 218 (364)
T PRK12462 144 APFRHYVSNETVEGLQFPDAAGLPDSPLIADMSSDFM-SRPF-DVEAYGMVYAHAQKNLGPAG--VTVAIIR-RALLERV 218 (364)
T ss_pred CcEEEEccCCCCceEecCcccccCCCeEEEEcCchhh-CCCC-ChHHccEEEeeccccCCCCc--eEEEEEC-HHHHhhc
Confidence 4454443222355888888777789999999764421 1122 12223899999999999998 5677776 7776654
Q ss_pred HHH-------H----h-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 310 TKY-------I----E-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 310 ~~~-------~----~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
.+. + . .+...++...-+++...|+.+.+.. .-++.+.++.+++.+.+++.+++.+++...
T Consensus 219 ~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~--------GGl~~~~~r~~~ka~~ly~~id~~~~~~~~ 290 (364)
T PRK12462 219 PDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEI--------GGVHAMRDINARKAAMLYATLDALNEVIDC 290 (364)
T ss_pred cccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 331 0 1 1223556777777888887764310 136778888899999999999988633322
Q ss_pred CCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHh
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSK 453 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~ 453 (456)
...... .+.. -+.+++++ ..+.+.+.++++|+....|.. ..+.+|+|+-. +.|.++.+++-+++
T Consensus 291 ~~~~~~--------RS~m-nv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr---~vgg~Ras~yna~~~e~v~~L~~fm~~ 358 (364)
T PRK12462 291 HAHRAA--------RSTM-NVAFRFRQPRLDTLFKEQSTEAGFCGLSGHR---SIGGIRASLYNAVSEQAVSRLCAFLKD 358 (364)
T ss_pred CCChhh--------cCcc-eEEEEcCCHHHHHHHHHHHHHCCCccccCCc---ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 222111 1222 35556643 356788888999999877653 24569999754 88999999888877
Q ss_pred h
Q 012785 454 I 454 (456)
Q Consensus 454 ~ 454 (456)
+
T Consensus 359 f 359 (364)
T PRK12462 359 F 359 (364)
T ss_pred H
Confidence 6
|
|
| >PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-09 Score=73.41 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=28.9
Q ss_pred CCCchhhHHHHhhhhhccccCCCceeecccccccccCCCCCCccccccccc
Q 012785 36 NFDSSFSLQQQRRSVMAGCVLKEKEHVSERTHLSLSSSPSPSPSSSLTSTD 86 (456)
Q Consensus 36 ~~w~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (456)
.+|++++++|||++|+|+||+|||+|+| ++..++ .+.++|+.
T Consensus 1 l~Wt~~Aa~eAeavAai~CSGHGr~flD-----g~~~dG----~p~CECn~ 42 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAAISCSGHGRAFLD-----GLIADG----SPVCECNS 42 (56)
T ss_dssp -STTHHHHHHHHHHHTS--TTSEE--TT-----S-EETT----EE--EE-T
T ss_pred CchHHHHHHHHHHhhcCCcCCCCeeeec-----cccccC----CccccccC
Confidence 3799999999999999999999999999 455555 37888876
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=92.71 Aligned_cols=145 Identities=13% Similarity=0.056 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh-hhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI-TDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~-~~~~g~~~~~~~~ 220 (456)
-.+..+.+|+.++. .+-.+++||++.++.+++.+++.+|| .|+++.-++-..... +.+.|++++.+..
T Consensus 176 i~eAq~~AA~~fgA-------d~tyFlvNGTS~gn~a~i~a~~~~Gd----~VLvdRN~HKSv~hgaLiLsGa~PVYl~P 244 (720)
T PRK13578 176 AKDAQKHAAKVFNA-------DKTYFVLNGTSASNKVVTNALLTPGD----LVLFDRNNHKSNHHGALIQAGATPVYLET 244 (720)
T ss_pred HHHHHHHHHHHhCC-------CceEEEeCChhHHHHHHHHHhcCCCC----EEEeecccHHHHHHHHHHHcCCeEEEeec
Confidence 35667777777763 45788999999999999999999999 999999999988885 7888998875432
Q ss_pred -----------Cccc-----cc----cC--------C-CeEEEEcCCCCCCcccch-----HH-hhhcCcEEEeeecCCC
Q 012785 221 -----------DAKR-----FN----KD--------G-PYIELVTSPNNPDGSVRQ-----SV-VNRSGGILVHDLAYYW 265 (456)
Q Consensus 221 -----------d~~~-----l~----~~--------~-~~~i~v~~P~NPtG~~~~-----~l-~~~~~~~iI~De~y~~ 265 (456)
+.+. ++ .. + .+++++++|+. .|.++. ++ ++..+ .|++||||..
T Consensus 245 ~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhga 322 (720)
T PRK13578 245 ARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVG 322 (720)
T ss_pred cccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchh
Confidence 2211 21 11 1 47888887754 488876 23 56677 9999999984
Q ss_pred -CCCCC----CC-----CCC--CCcEEEecCccccCCCCceE-EEEEEe
Q 012785 266 -PQYTS----IT-----YPA--DHDLMLFTVSKSTGHAGTRI-GWALVK 301 (456)
Q Consensus 266 -~~~~~----~~-----~~~--~~~i~i~S~SK~~g~~G~Ri-G~l~~~ 301 (456)
..|.+ ++ ... ..++++.|..|++ +++.- .++.+.
T Consensus 323 h~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL--~alTQaS~LHvk 369 (720)
T PRK13578 323 YEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQ--AGFSQTSQIHKK 369 (720)
T ss_pred hhccCcccccCChhhhhcCCCCCCeEEEEChhhcc--hhhhhHhhhhcC
Confidence 12222 11 111 2358899999986 55544 455554
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-06 Score=89.75 Aligned_cols=285 Identities=12% Similarity=0.031 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHH-HhcCccCC----CceEEEccCHHHHHHHHHHHhcCC-----C--CCCCcEEEEeCCCCCChhhhhhh
Q 012785 143 PEFAKEVVRLHK-VVGNAITE----NHHIVVGTGSTQLFQAALYALSSQ-----D--ASEPISVVSAAPYYSSYPSITDC 210 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~----~~~I~~t~G~~~al~~~~~~l~~~-----g--d~~~~~Vlv~~P~y~~~~~~~~~ 210 (456)
.++++.+.+|+. ..|.+... ...-++|+|+++++..++.+.... | ...+..|++.+-++......+..
T Consensus 121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~ 200 (490)
T PLN02880 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQI 200 (490)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHH
Confidence 788888888884 45654310 023567899999987776654321 1 01122566788888889999999
Q ss_pred cCCe---Eeeecc--------CccccccC---------CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC
Q 012785 211 VKSR---LYKWAG--------DAKRFNKD---------GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 211 ~g~~---~~~~~~--------d~~~l~~~---------~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~ 265 (456)
+|+. ++.++. |.+.|++. .+.+|+-+-..-+||.+-+ ++|+++|+|+.+|-+|.+
T Consensus 201 lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg 280 (490)
T PLN02880 201 AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAG 280 (490)
T ss_pred cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHH
Confidence 9984 444444 33333221 2455666666778899866 489999999999999986
Q ss_pred CCC-----CC-CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHH-HHHHHHHHhhcc--------------C---cCC
Q 012785 266 PQY-----TS-ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV-AKKMTKYIELNT--------------I---GVS 321 (456)
Q Consensus 266 ~~~-----~~-~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~-~~~l~~~~~~~~--------------~---~~s 321 (456)
... .. +.....-+-+..++.|.++ ...-+|.++++++.. .+.+........ + ...
T Consensus 281 ~~~~~~~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~r 359 (490)
T PLN02880 281 SACICPEYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGR 359 (490)
T ss_pred HHHhCHHHHHHhcCchhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCC
Confidence 311 11 1122234688899999876 668899999975432 222211110000 0 001
Q ss_pred hHHHHHHHHH---HHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceE
Q 012785 322 KDSQLRAAKV---LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 322 ~~~q~~a~~~---L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
.+. +.++ |+. -| .+-+++..++.-+..+++.+.|++.+.+++..+... +-+
T Consensus 360 r~~---alklw~~l~~--~G--------~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~-------------~iv 413 (490)
T PLN02880 360 RFR---SLKLWMVLRL--YG--------VENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIF-------------SLV 413 (490)
T ss_pred ccc---HHHHHHHHHH--hC--------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCce-------------EEE
Confidence 111 2222 321 12 344555555555777888888888776666544221 123
Q ss_pred EeecCc---c-------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 399 WLKCEQ---E-------IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 399 ~~~~~~---~-------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
.++++. + .+.+.+.+.+.|-.......+. +..++|+++.. ++++++.+++.|.++.
T Consensus 414 ~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~-g~~~lR~~~~n~~tt~~di~~~~~~i~~~~ 482 (490)
T PLN02880 414 CFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLS-GKYVLRFAVGAPLTEERHVTAAWKVLQDEA 482 (490)
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEEC-CEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 334421 1 1234444444444433333332 36699999864 5689999999987753
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-06 Score=92.46 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=156.2
Q ss_pred EEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc------CCC
Q 012785 167 VVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK------DGP 230 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~------~~~ 230 (456)
+..+|+.++-...+.+... .|+..+.+|+++.-.+......++..|++++.++.| .+.++. .++
T Consensus 550 l~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~t 629 (939)
T TIGR00461 550 LQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDEL 629 (939)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCce
Confidence 3455555655444433332 222122278899988877777788899999887764 333321 267
Q ss_pred eEEEEcCCCCCCcccch------HHhhhcCcEEEeeecCCC-CCCCCCCCCCCCcEEEecCccccCC----CCceEEEEE
Q 012785 231 YIELVTSPNNPDGSVRQ------SVVNRSGGILVHDLAYYW-PQYTSITYPADHDLMLFTVSKSTGH----AGTRIGWAL 299 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~------~l~~~~~~~iI~De~y~~-~~~~~~~~~~~~~i~i~S~SK~~g~----~G~RiG~l~ 299 (456)
++|++++|+| +|.+-+ ++|+++|.++++|-++.- ......+...+-+++++|..|+|+. .|=-+|.+.
T Consensus 630 aaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~ 708 (939)
T TIGR00461 630 AAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIG 708 (939)
T ss_pred EEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEE
Confidence 8999999999 898755 378889999999999864 2111122345678999999997652 233479999
Q ss_pred EeCHHHHHHHHHHH---------------hhccCcC-ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 300 VKDMEVAKKMTKYI---------------ELNTIGV-SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 300 ~~~~~~~~~l~~~~---------------~~~~~~~-s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
++ +++...+-... .....+. +......+...|.. -| .+-+++.-+..-.+.++
T Consensus 709 vr-~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~--lG--------~~GL~~~a~~ailnAnY 777 (939)
T TIGR00461 709 VK-SHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKM--MG--------NEGLPKASVVAILNANY 777 (939)
T ss_pred Eh-hhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHH--HC--------HHHHHHHHHHHHHHHHH
Confidence 97 55444332000 0001011 11111223333332 12 45566667767778888
Q ss_pred HHHHHHhcCCccccCC--CCcccccccccCCCCCceEEeecC-------ccHHHHHHHHHhCCEEeecCCCCCC-CCCeE
Q 012785 364 LRMAVQKSGLFSVPEL--PSQFCTFLGRAFEPQPAFAWLKCE-------QEIEDCESFLKGNKILTRSGKHFGF-SPKYV 433 (456)
Q Consensus 364 l~~~L~~~~~~~~~~~--~g~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~i 433 (456)
+.+.|++. +.+.-+ .+.+.+ =+.++++ ....++.+.|.++|+..-. ..|.. +.-.|
T Consensus 778 l~~rL~~~--~~~l~~~~~~~~~h-----------Efv~~~~~~~~~~g~~~~dIakrL~d~G~hapt-~~~pv~g~lmi 843 (939)
T TIGR00461 778 MATRLKDH--YPILFVGTLKHVAH-----------ECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPT-LSFPVPGTLMV 843 (939)
T ss_pred HHHHhhcc--CcccccCCCCceeE-----------EEEEeccchhhhcCCCHHHHHHHHHhCCeeccc-cCCccCCeEEE
Confidence 88888763 222211 111100 0333443 2467899999999998543 33432 22357
Q ss_pred EEEecCChhHHHHHHHHHHhh
Q 012785 434 RISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 434 Ris~~~~~e~i~~~l~~L~~~ 454 (456)
|.+-+.++++++.+++.|.++
T Consensus 844 epTE~eskeelD~f~~al~~I 864 (939)
T TIGR00461 844 EPTESESLEELDRFCDAMIAI 864 (939)
T ss_pred EeeccCCHHHHHHHHHHHHHH
Confidence 777766999999999998765
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-06 Score=86.54 Aligned_cols=284 Identities=12% Similarity=0.083 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHH-hcCcc----------CCCceEEEccCHHHHHHHHHHHhcCC-----C-----------------CC
Q 012785 143 PEFAKEVVRLHKV-VGNAI----------TENHHIVVGTGSTQLFQAALYALSSQ-----D-----------------AS 189 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~----------~~~~~I~~t~G~~~al~~~~~~l~~~-----g-----------------d~ 189 (456)
.++++.+.+|+.. .+... .+...-++|+|+++++..++.+.... + ..
T Consensus 128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~ 207 (522)
T TIGR03799 128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY 207 (522)
T ss_pred HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence 7899999888843 32110 01123467999999988777654321 0 00
Q ss_pred CCcEEEEeCCCCCChhhhhhhcCC---eEeeeccC------cccccc-------CCCe--EEEEcCCCCCCcccch----
Q 012785 190 EPISVVSAAPYYSSYPSITDCVKS---RLYKWAGD------AKRFNK-------DGPY--IELVTSPNNPDGSVRQ---- 247 (456)
Q Consensus 190 ~~~~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~d------~~~l~~-------~~~~--~i~v~~P~NPtG~~~~---- 247 (456)
.+..|++.+-.+......++.+|. +++.++.| .+.++. .+.+ +|+.+..++.||.+-+
T Consensus 208 ~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eI 287 (522)
T TIGR03799 208 DGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEM 287 (522)
T ss_pred CceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHH
Confidence 123688888888888888888887 56666554 333432 2333 3333455679999977
Q ss_pred -HHhhhcCcEEEeeecCCCCCCC-C-----CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh-----
Q 012785 248 -SVVNRSGGILVHDLAYYWPQYT-S-----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL----- 315 (456)
Q Consensus 248 -~l~~~~~~~iI~De~y~~~~~~-~-----~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~----- 315 (456)
++|+++|+++.+|-+|.+.... + +.....-+.+..+..|.++.| .-+|.+++++++..+.+......
T Consensus 288 a~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P-~g~G~llvr~~~~~~~~~~~~~Yl~~~~ 366 (522)
T TIGR03799 288 ADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP-MGAGMVLFKDPALMSAIEHHAEYILRKG 366 (522)
T ss_pred HHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-cccEEEEEeCHHHHHHhccCcchhcCCC
Confidence 4899999999999999863211 1 111224478899999955423 45899999877666555431000
Q ss_pred ------ccCcCChHHH-HHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 316 ------NTIGVSKDSQ-LRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 316 ------~~~~~s~~~q-~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
.++..+.... ..+-..|+.+ + ..-++.+.++..+..+++.+.|++.+.+++..++. +
T Consensus 367 ~~d~~~~~legsR~~~al~lw~aL~~l--G--------~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~-l----- 430 (522)
T TIGR03799 367 SKDLGSHTLEGSRPGMAMLVYAGLHII--G--------RKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPE-L----- 430 (522)
T ss_pred CCccccceeecCcchHHHHHHHHHHHH--h--------HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCC-c-----
Confidence 0111222221 1233333322 1 34567788888889999999999887777655421 1
Q ss_pred ccCCCCCceEEeec-Cc-----------------------cHHHHHHHHHhCCEEeecCC-----CC-CCCCCeEEEEec
Q 012785 389 RAFEPQPAFAWLKC-EQ-----------------------EIEDCESFLKGNKILTRSGK-----HF-GFSPKYVRISML 438 (456)
Q Consensus 389 ~~~~~~~~f~~~~~-~~-----------------------~~~~~~~~l~~~gI~v~pg~-----~f-g~~~~~iRis~~ 438 (456)
+-+.+++ |. -...+.+.+.+.|....... .+ |.+...+|+++.
T Consensus 431 -------~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~ 503 (522)
T TIGR03799 431 -------CLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLA 503 (522)
T ss_pred -------cEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEec
Confidence 0122221 10 01345566666776655422 22 222357999987
Q ss_pred C---ChhHHHHHHHH
Q 012785 439 D---RDENYNLFVQR 450 (456)
Q Consensus 439 ~---~~e~i~~~l~~ 450 (456)
. ++++++.+++.
T Consensus 504 np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 504 NPLTTHEILQDILDE 518 (522)
T ss_pred CCCCCHHHHHHHHHH
Confidence 5 67788877764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-06 Score=90.78 Aligned_cols=263 Identities=13% Similarity=0.042 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc------cccc------CCCeEEE
Q 012785 171 GSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK------RFNK------DGPYIEL 234 (456)
Q Consensus 171 G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~------~l~~------~~~~~i~ 234 (456)
++.++-.+.+.++. .+|+....+|+++.-.+......+...|++++.++.|.+ .++. .++.+|+
T Consensus 567 sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVm 646 (954)
T PRK12566 567 SGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLM 646 (954)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEE
Confidence 44455545555543 233322227888887765555567778999988877533 2221 2556778
Q ss_pred EcCCCCCCcccc--h---HHhhhcCcEEEeeecCCC-CCCCCCCCCCCCcEEEecCccccCCC----CceEEEEEEeCHH
Q 012785 235 VTSPNNPDGSVR--Q---SVVNRSGGILVHDLAYYW-PQYTSITYPADHDLMLFTVSKSTGHA----GTRIGWALVKDME 304 (456)
Q Consensus 235 v~~P~NPtG~~~--~---~l~~~~~~~iI~De~y~~-~~~~~~~~~~~~~i~i~S~SK~~g~~----G~RiG~l~~~~~~ 304 (456)
+++|++=.+... . ++++++|+++++|-+..- ......+...+-+++.+++.|+|+.| |.-+|.+.+. ++
T Consensus 647 iT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~-~~ 725 (954)
T PRK12566 647 ITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVR-AH 725 (954)
T ss_pred EEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhh-hh
Confidence 888876544322 2 367889999999998752 11111123456789999999988533 3335665554 44
Q ss_pred HHHHHHHHH--h-------hccC-c---CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 012785 305 VAKKMTKYI--E-------LNTI-G---VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS 371 (456)
Q Consensus 305 ~~~~l~~~~--~-------~~~~-~---~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 371 (456)
+...+...- . ..+. . .+.....++...+..+ | .+ +.+.......+.+++.+.|.+.
T Consensus 726 L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~l--G--------~e-Lk~aa~~ailnAnYla~rL~~~ 794 (954)
T PRK12566 726 LAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMM--G--------PQ-LADASEVAILSANYLANQLGGA 794 (954)
T ss_pred hhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHH--C--------HH-HHHHHHHHHHHHHHHHHHhHhh
Confidence 443333210 0 0011 1 1111122333333321 2 34 6666666667788888888764
Q ss_pred CCccccCCCCcccccccccCCCCCceEEeecC----ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHH
Q 012785 372 GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYN 445 (456)
Q Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~ 445 (456)
-...+.++.+.+.. +....+..++ .+.+++.+.|.++||..-- ..|. ..+.+|++..- ++++++
T Consensus 795 ~~v~~~~~~~~~~h--------Efii~~~~l~~~~g~~~~dvakRL~d~Gihapt-~~fP-v~~~LmIepTE~eskeEID 864 (954)
T PRK12566 795 FPVLYRGRNERVAH--------ECILDLRPLKAQTGISEEDVAKRLMDYGFHAPT-MSFP-VPGTLMVEPTESESKAELD 864 (954)
T ss_pred CCCCcCCCCCCeee--------EEEEEccccccccCCCHHHHHHHHHHCCcEEeE-Eeec-cCCEEEEEeeeeCCHHHHH
Confidence 22333222222100 0001111222 2456688888899998544 3443 47899999753 899999
Q ss_pred HHHHHHHhhh
Q 012785 446 LFVQRLSKIL 455 (456)
Q Consensus 446 ~~l~~L~~~l 455 (456)
.+++.|+++.
T Consensus 865 rf~eAL~~I~ 874 (954)
T PRK12566 865 RFVEAMLSIR 874 (954)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-06 Score=86.81 Aligned_cols=288 Identities=14% Similarity=0.077 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHH-HhcCccC----CCceEEEccCHHHHHHHHHHHhcCC-----CC--CCCcEEEEeCCCCCChhhhhhh
Q 012785 143 PEFAKEVVRLHK-VVGNAIT----ENHHIVVGTGSTQLFQAALYALSSQ-----DA--SEPISVVSAAPYYSSYPSITDC 210 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~----~~~~I~~t~G~~~al~~~~~~l~~~-----gd--~~~~~Vlv~~P~y~~~~~~~~~ 210 (456)
.++++.+.+|+. ..|.+.. ....=++++|+++++..++.+.... |. ..+..|++.+-++......+..
T Consensus 169 t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~i 248 (539)
T PLN02590 169 TELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLI 248 (539)
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHH
Confidence 789999999884 4665531 0123567899999887776654331 10 1112566678888889999999
Q ss_pred cCC---eEeeeccC--------ccccccC---------CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC
Q 012785 211 VKS---RLYKWAGD--------AKRFNKD---------GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 211 ~g~---~~~~~~~d--------~~~l~~~---------~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~ 265 (456)
+|+ .++.++.| .+.|+.. .+.+|+-+-..=+||.+=+ ++|+++++|+-+|-+|.+
T Consensus 249 lGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG 328 (539)
T PLN02590 249 GGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAG 328 (539)
T ss_pred cCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhh
Confidence 987 35555544 3333221 2455665566777888744 489999999999999996
Q ss_pred CC-----CCCCCCC-CCCcEEEecCccccCCCCceEEEEEEeCHH-HHHHHHH---HHhh-------------ccCcCCh
Q 012785 266 PQ-----YTSITYP-ADHDLMLFTVSKSTGHAGTRIGWALVKDME-VAKKMTK---YIEL-------------NTIGVSK 322 (456)
Q Consensus 266 ~~-----~~~~~~~-~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~-~~~~l~~---~~~~-------------~~~~~s~ 322 (456)
.. +..+... ..-+=+...+.|.+. ...-.|.++++++. +.+.+.. +... .+...+.
T Consensus 329 ~al~~~~~r~~~~Gie~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsR 407 (539)
T PLN02590 329 NACICPEYRKFIDGIENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSR 407 (539)
T ss_pred hhhcChhhHHHhcCCccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCC
Confidence 32 1111111 222556778999776 66889999998653 3333321 1100 0111122
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
-. .+.++.-.+..- ..+-++++.++.-+..+++.+.+++.+.+++..+.. + +-+.+++
T Consensus 408 r~--raLklW~~lr~~-------G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~-l------------~iVcFr~ 465 (539)
T PLN02590 408 RF--RSLKLWMVLRLY-------GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY-F------------SLVCFRL 465 (539)
T ss_pred ch--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-e------------EEEEEEe
Confidence 11 122222211111 145566777777788888999998887777655422 1 1233333
Q ss_pred Cc---c-------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhh
Q 012785 403 EQ---E-------IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKI 454 (456)
Q Consensus 403 ~~---~-------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~ 454 (456)
.. + ...+.+.+.+.|.......... +..++|++++. ++++++.+++.|.+.
T Consensus 466 ~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~-g~~~lR~~i~n~~T~~~dv~~~~~~i~~~ 529 (539)
T PLN02590 466 APVDGDEDQCNERNRELLAAVNSTGKIFISHTALS-GKFVLRFAVGAPLTEEKHVTEAWQIIQKH 529 (539)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEEC-CEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 21 1 1345555555665554433332 35689999874 688999999998775
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-06 Score=82.11 Aligned_cols=270 Identities=13% Similarity=0.073 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcCC--CCCCCcEEEEeCCCCCChhhhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSSQ--DASEPISVVSAAPYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~--gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~ 218 (456)
..++++.+-+|+. ..|.+.... .=.+|+|+|+++..++.+..+. .. .|++++-++......++.+|++++.+
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~-~G~vtsGGTEaNL~Al~aARe~~~~~----vvy~S~~aH~Sv~KAa~llgi~~~~V 205 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEY-WGYITNCGTEGNLHGILVGREVFPDG----ILYASRESHYSVFKAARMYRMECVKV 205 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC-eEEEeCcHHHHHHHHHHHHHhhcCCc----EEEEcCCccHHHHHHHHhcCCcceEe
Confidence 4788888888884 456543211 2467999999998888776542 22 78889999999999999999998876
Q ss_pred ccC------cccccc----C--CCeEEEEcCCCCCCcccch-----HHhhhcCc-----EEEeeecCCCCCC---C---C
Q 012785 219 AGD------AKRFNK----D--GPYIELVTSPNNPDGSVRQ-----SVVNRSGG-----ILVHDLAYYWPQY---T---S 270 (456)
Q Consensus 219 ~~d------~~~l~~----~--~~~~i~v~~P~NPtG~~~~-----~l~~~~~~-----~iI~De~y~~~~~---~---~ 270 (456)
+.| .+.|+. + ++.+|+.+-+.=++|.+=+ ++|+++|+ |+-+|-+|.+.-. . .
T Consensus 206 p~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 206 DTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred ccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccc
Confidence 654 333432 2 2556666677889999844 47888886 9999999986211 1 1
Q ss_pred CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh-----hccCcCChHHHHHH--HHHHHhhhCCCCCCC
Q 012785 271 ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE-----LNTIGVSKDSQLRA--AKVLKVVSDSCKPSG 343 (456)
Q Consensus 271 ~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~-----~~~~~~s~~~q~~a--~~~L~~~~~~~~~~~ 343 (456)
+.....-+=+..+..|.++ .-...|.++.+ ....+.+..-.. ..+...+...+.++ -..|+. -|
T Consensus 286 ~df~~~vDSIsvD~HK~l~-~P~~cgvll~R-~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~--~G----- 356 (470)
T PLN02263 286 VTFKKPIGSVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR--KG----- 356 (470)
T ss_pred cCCCcCccEEEECCccccC-CCcCEEEEEEe-hhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHH--hC-----
Confidence 1111112344667889776 66889999998 444443322111 01233343332222 222221 12
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecC
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg 423 (456)
.+-+++..+..-+..+++.+.|++.+...+..|.. +-+.++.+.+ +. ..+|-.+..
T Consensus 357 ---~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s--------------~~V~f~~p~~-~~-----~~~gW~L~~- 412 (470)
T PLN02263 357 ---YRGFQKEVQKCLRNAHYLKDRLREAGISAMLNELS--------------STVVFERPKD-EE-----FVRRWQLAC- 412 (470)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCc--------------eEEEEecCch-HH-----hhcceEEcc-
Confidence 45566667777778888888998876444443332 2344443321 11 234555543
Q ss_pred CCCCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 424 KHFGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 424 ~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.++.++|.+.. +.+.++++++.|++.
T Consensus 413 -----~~~~~Hivvmphv~~~~id~fi~DL~~~ 440 (470)
T PLN02263 413 -----QGNIAHVVVMPSVTIEKLDYFLKELVEK 440 (470)
T ss_pred -----CCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 24568999864 778999999998765
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8e-06 Score=83.20 Aligned_cols=264 Identities=13% Similarity=0.138 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
-.+..+.+|+.++. ....+++||++.++..++.+++.+|| .|+++..++-.........|+..+.+..
T Consensus 72 i~eAqe~aA~~fgA-------d~tyFvvNGTS~ank~vi~a~~~~GD----~VLvdRN~HKSi~~glilaGa~Pvyl~p~ 140 (557)
T COG1982 72 IKEAQELAARVFGA-------DHTYFVVNGTSTANKAVINAVLTPGD----KVLVDRNCHKSIHHGLILAGATPVYLEPS 140 (557)
T ss_pred HHHHHHHHHHHhCC-------CceEEEECCccHHHHHHHHhhcCCCC----EEEecCCccHHHHHHHHHcCCceEEecCC
Confidence 46778888888874 45788999999999999999999999 9999999999999999999998875443
Q ss_pred -----------Ccccccc-----CCC-eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC-CCCCC-CC---C
Q 012785 221 -----------DAKRFNK-----DGP-YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-PQYTS-IT---Y 273 (456)
Q Consensus 221 -----------d~~~l~~-----~~~-~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-~~~~~-~~---~ 273 (456)
+.+.+++ ... ++++++||.. .|+++. +++..+++++..|++..- ..+.+ ++ .
T Consensus 141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~ 219 (557)
T COG1982 141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESAL 219 (557)
T ss_pred CCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhh
Confidence 2222222 123 7777866543 388876 256778999999998762 11222 11 1
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeC--HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKD--MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~--~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
....++..-|..|.++ +..-..++.+++ .--.+++..+......+.+.-...+...+-+..... ...+..+
T Consensus 220 ~~~~~~~tqS~HK~l~-alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~------~G~~l~~ 292 (557)
T COG1982 220 NGGADFVTQSTHKLLA-ALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMASLDVARMQEGN------AGRELWQ 292 (557)
T ss_pred hcCceEEEechhhhhh-hhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhh------hhHHHHH
Confidence 2456888999999875 443445565553 111345555544333333322222222221111111 1233334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCC--------cccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEe
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPELPS--------QFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILT 420 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v 420 (456)
+..+..-+.|+.+.+.....+++.+..+.- ||-.+-+..+--++.=+.+..++ ....+...|+++||..
T Consensus 293 ~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~ 372 (557)
T COG1982 293 EVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIP 372 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCee
Confidence 444555556666666666665444433321 01000000000111113333322 5678899999999987
Q ss_pred ecCC
Q 012785 421 RSGK 424 (456)
Q Consensus 421 ~pg~ 424 (456)
.-..
T Consensus 373 e~~~ 376 (557)
T COG1982 373 EETG 376 (557)
T ss_pred eecC
Confidence 7633
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-05 Score=78.78 Aligned_cols=314 Identities=12% Similarity=0.105 Sum_probs=176.7
Q ss_pred CCCCeEEecCCCCCC-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTM-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
+.+-.|||-+..-+- +++. ++.+ +..+.+ .|..+.. ...|++.++++++. +.++.|.
T Consensus 39 s~dV~IDLrSDTgT~apS~~-m~aA-----M~~GDD---~Y~gdpS-----v~~Lee~vael~G~--------E~alpth 96 (467)
T TIGR02617 39 SEDVFIDLLTDSGTGAVTQS-MQAA-----MMRGDE---AYSGSRS-----YYALAESVKNIFGY--------QYTIPTH 96 (467)
T ss_pred CCCeEEECccCCCCCCCCHH-HHHH-----HHcCCc---ccccCch-----HHHHHHHHHHHhCC--------ceEEECC
Confidence 334568886655442 3332 2221 222322 3655544 48999999999974 4688887
Q ss_pred CHHHHHHHHHHHhcC-CCCCCCcEEEEeCC--------CCCChhhhhhhcCCeEeeec----------------cCcccc
Q 012785 171 GSTQLFQAALYALSS-QDASEPISVVSAAP--------YYSSYPSITDCVKSRLYKWA----------------GDAKRF 225 (456)
Q Consensus 171 G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P--------~y~~~~~~~~~~g~~~~~~~----------------~d~~~l 225 (456)
.+..+-.+++..+++ +|+ ++++..+ .|......+...|+....+. +|.+.+
T Consensus 97 qGRgaE~Il~~~~~~~~g~----e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~l 172 (467)
T TIGR02617 97 QGRGAEQIYIPVLIKKREQ----EKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGL 172 (467)
T ss_pred CCchHHHHHHHhhcccccc----cccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHH
Confidence 778888899989888 677 6775553 12222334566777655431 233333
Q ss_pred cc-------CCCeEEEEcCCCCCC-cccch--------HHhhhcCcEEEeee------cCC----CCCCCCCC--C----
Q 012785 226 NK-------DGPYIELVTSPNNPD-GSVRQ--------SVVNRSGGILVHDL------AYY----WPQYTSIT--Y---- 273 (456)
Q Consensus 226 ~~-------~~~~~i~v~~P~NPt-G~~~~--------~l~~~~~~~iI~De------~y~----~~~~~~~~--~---- 273 (456)
+. .+.-.+.+.--+|-. |.++| ++|+++|+.++.|- +|. ++.+.... .
T Consensus 173 e~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE 252 (467)
T TIGR02617 173 ERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRE 252 (467)
T ss_pred HHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHH
Confidence 21 111122111113433 66766 38999999999995 331 12222221 1
Q ss_pred -CCCCcEEEecCccccCCC-CceEEEEEEeCH---HHHHHHHHHHh----h-ccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 274 -PADHDLMLFTVSKSTGHA-GTRIGWALVKDM---EVAKKMTKYIE----L-NTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 274 -~~~~~i~i~S~SK~~g~~-G~RiG~l~~~~~---~~~~~l~~~~~----~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
...-+.+..|+||.+|.| | |+++++++ ++.++++...- + +..|.+.-...+++..|....
T Consensus 253 ~~~~aDsvt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~------- 322 (467)
T TIGR02617 253 TYKYADMLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM------- 322 (467)
T ss_pred hhccCCEEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcc-------
Confidence 123367788999988866 4 57777777 44444444211 1 233566666666666666321
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEE
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKIL 419 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~ 419 (456)
.+++++....+. ++|.+.|.+.+ +.++. .||.+-|++--. ++..+|. ......++..+.||-
T Consensus 323 --~~~yl~~ri~qv----~yl~~~L~~~G-vpi~~-~Gghav~iDa~~------~lphip~~~fpa~al~~~ly~~~GiR 388 (467)
T TIGR02617 323 --NLDWLAYRINQV----QYLVNGLEEIG-VVCQQ-AGGHAAFVDAGK------LLPHIPADQFPAHALACELYKVAGIR 388 (467)
T ss_pred --cHHHHHHHHHHH----HHHHHHHHhCC-CcEEe-cCccEEEEehhh------hCCCCChhhCcHHHHHHHHHHHcCcc
Confidence 245554444333 45666777665 44555 777754322100 0111221 234566777889997
Q ss_pred eecCCCC--CC----------CCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 420 TRSGKHF--GF----------SPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 420 v~pg~~f--g~----------~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
..--..+ +. .-..+|+++.+ +.+.++...++|..+.
T Consensus 389 ~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~ 439 (467)
T TIGR02617 389 AVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_pred eEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHH
Confidence 5433222 21 12579999875 8899999999988764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.1e-08 Score=92.49 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=112.1
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh---h
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP---S 206 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~---~ 206 (456)
.|+.... ..+|++.++++++. +..+++++++.+..+++++++.+++ .|++..+++.... .
T Consensus 24 ~Yg~D~~-----~~~l~~~i~~l~g~--------e~a~f~~sGT~An~~al~~~~~~~~----~vi~~~~aHi~~~E~ga 86 (290)
T PF01212_consen 24 AYGEDPT-----TARLEERIAELFGK--------EAALFVPSGTMANQLALRAHLRPGE----SVICADTAHIHFDETGA 86 (290)
T ss_dssp CTTSSHH-----HHHHHHHHHHHHTS--------SEEEEESSHHHHHHHHHHHHHHTTE----EEEEETTEHHHHSSTTH
T ss_pred ccCCChh-----HHHHHHHHHHHcCC--------CEEEEeCCCChHHHHHHHHHHhcCC----ceeccccceeeeeccch
Confidence 3666544 48999999999974 3667899999999999999999998 8999998654322 2
Q ss_pred hhhhcCCeEeeeccCc------ccccc---------CCCeEEEEcCCCCCC-cccch--------HHhhhcCcEEEeeec
Q 012785 207 ITDCVKSRLYKWAGDA------KRFNK---------DGPYIELVTSPNNPD-GSVRQ--------SVVNRSGGILVHDLA 262 (456)
Q Consensus 207 ~~~~~g~~~~~~~~d~------~~l~~---------~~~~~i~v~~P~NPt-G~~~~--------~l~~~~~~~iI~De~ 262 (456)
.....|.+++.++.+. +.++. .++++|.+++|+|-. |.+++ ++|+++|+.+..|-+
T Consensus 87 ~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 87 IEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp HHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEET
T ss_pred hhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehh
Confidence 2355789888776443 33321 246899999999975 66776 389999999999987
Q ss_pred CCCCCC----CCCCC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 263 YYWPQY----TSITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 263 y~~~~~----~~~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
-.+... .++.. ...-+++..|++|.+|+++ |-+++.+++++++....+.
T Consensus 167 Rl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k 220 (290)
T PF01212_consen 167 RLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRK 220 (290)
T ss_dssp THHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHH
T ss_pred hHHHhhhcccccHHHHhhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHH
Confidence 542100 00110 1234688889999988775 6666666887666555443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.5e-05 Score=71.12 Aligned_cols=277 Identities=12% Similarity=0.037 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC--CCCCCcEEEEeC-CCCCC----hhhhhhhcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ--DASEPISVVSAA-PYYSS----YPSITDCVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~--gd~~~~~Vlv~~-P~y~~----~~~~~~~~g~~~ 215 (456)
..|-..+|.+++. .+.+++++.+++--++.++.+.+++ |+ +|++++ -+|+. ...+++.++...
T Consensus 79 ~~lgdklApLiGA------~~~Evvv~dtts~nl~k~L~aalr~~~~r----~vIv~E~~~fpTdly~a~g~~~~~~~~~ 148 (407)
T COG3844 79 ERLGDKLAPLIGA------RAGEVVVTDTTSINLFKVLAAALRPQEGR----RVIVSEGDNFPTDLYIAEGLADLLGIGY 148 (407)
T ss_pred hHHHHHhhhhhcC------CCCceEEeCCcchHHHHHHHHHhccCCCc----eEEeecCCCCCcchhhhcchhhhhcccc
Confidence 3455556666654 4678999999998888888877553 55 566554 44443 223344444221
Q ss_pred -eeeccCccccc---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc
Q 012785 216 -YKWAGDAKRFN---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 216 -~~~~~d~~~l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK 286 (456)
+....+++.++ .+++.+++++..|.-||..+. .++.+++++++-|-+++-....--....+-++-|++--|
T Consensus 149 ~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyK 228 (407)
T COG3844 149 DLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYK 228 (407)
T ss_pred cceeeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeece
Confidence 11111222332 346678889889999999976 478999999999999874222211234455777888888
Q ss_pred cc-CCCCceEEEEEEeCHHHHHHHHHH-----------------------HhhccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 287 ST-GHAGTRIGWALVKDMEVAKKMTKY-----------------------IELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 287 ~~-g~~G~RiG~l~~~~~~~~~~l~~~-----------------------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
.+ |-||-. +++.+. ++..++.... ..+.....+..+..+....|+...+
T Consensus 229 YLNgGPGap-a~l~v~-~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~----- 301 (407)
T COG3844 229 YLNGGPGAP-AGLFVA-PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFAD----- 301 (407)
T ss_pred eccCCCCCc-eeEEec-cccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhh-----
Confidence 77 336654 344443 3333322111 1112233444455555555553222
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhc-C--CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEE
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKS-G--LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKIL 419 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~ 419 (456)
--+.++|++--..-+++.+.++.. + .+++..|... ...|..+-+..+ ....+.+.|.++||.
T Consensus 302 -----~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~---------~~rGsqvS~~hp-~~~~V~qaLi~rGVi 366 (407)
T COG3844 302 -----VDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAH---------EERGSQVSLYHP-HGYQVMQALIDRGVI 366 (407)
T ss_pred -----cCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchh---------hhccceeeEecC-cHHHHHHHHHHcCcc
Confidence 125566666666677777777654 2 3444444321 122333444444 577899999999998
Q ss_pred eecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l~ 456 (456)
.-- ..++.+|+.++. +-+++=.+++.|.++|+
T Consensus 367 gD~-----R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~ 401 (407)
T COG3844 367 GDF-----REPDVLRFGFTPLYVSFVDVWDAVDALEEVLD 401 (407)
T ss_pred ccc-----cCCCeeeecCccceechhHHHHHHHHHHHHHH
Confidence 532 248999999874 77888889999888874
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00014 Score=79.24 Aligned_cols=266 Identities=13% Similarity=0.069 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc-C--CCCCCCcEEEEeCCCCCChhhhhh----hcCCeEe
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS-S--QDASEPISVVSAAPYYSSYPSITD----CVKSRLY 216 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~--~gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~~ 216 (456)
+++..++++.+. +..+.-+-.+++.+.++++.+.. . .++ +|++++-.+|.+....+ ..|.+++
T Consensus 113 e~Qt~i~eLtGm------~~aNaSl~d~atA~aEa~~~a~~~~~~~~~----~vlv~~~~hP~~~~v~~t~a~~~g~~v~ 182 (939)
T TIGR00461 113 NFQTVVSDLTGL------PVANASLLDEGTAAAEAMALSFNVSKKKAN----KFFVAKDLHPQTKSVLHTRAKPFGIEVI 182 (939)
T ss_pred HHHHHHHHHHCC------ChhhhhccchhhHHHHHHHHHHHhhcCCCC----EEEECCCCCcchHHHHHHHHHhcCcEEE
Confidence 344445555443 23355677778887777766642 2 224 89999999998886555 6788888
Q ss_pred eeccCccccccC-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCC
Q 012785 217 KWAGDAKRFNKD-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGH 290 (456)
Q Consensus 217 ~~~~d~~~l~~~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~ 290 (456)
.++. +.++.. ++.++++.+|+. .|.+.+ +++++.|.++|.+--........-+...+-+|+++ -+|.||+
T Consensus 183 ~~~~--~~l~~~~~~~~v~~q~Pn~-~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg-~~q~fg~ 258 (939)
T TIGR00461 183 VVDC--SDIKKAVDVFGCLLQYPAT-DGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLG-SSQRFGV 258 (939)
T ss_pred EEcH--HHHhhcCCEEEEEEECCCC-CeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEee-CCCccCC
Confidence 7654 345433 567788888864 688754 36778899998853111100000112234456644 3343443
Q ss_pred C----CceEEEEEEeCHHHHHHH----------------------------HHHHhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 291 A----GTRIGWALVKDMEVAKKM----------------------------TKYIELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 291 ~----G~RiG~l~~~~~~~~~~l----------------------------~~~~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
| |=-.|++.++ +++...+ ++-+..++.+.+.......+.+.-.. .+
T Consensus 259 p~g~GGP~aG~~a~~-~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~-~G 336 (939)
T TIGR00461 259 PMGYGGPHAAFFAVK-DEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVY-HG 336 (939)
T ss_pred CCCCCCCceeeeeec-HhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHH-HC
Confidence 1 2226666665 4444332 11111112222222222111211111 12
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-ccHHHHHHHHHhCC
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-QEIEDCESFLKGNK 417 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~g 417 (456)
.+-++++.++...+..++.+.|++.+ +++..+ .||+ =+.++++ .+.+.+.+.+.++|
T Consensus 337 --------~~GL~~iA~~~~~~a~~l~~~L~~~G-~~~~~~-----~fF~--------~~~v~~~~~~~~~i~~~~~~~g 394 (939)
T TIGR00461 337 --------PKGLKNIARRIHSLTSILANGLENDP-HELINK-----TWFD--------TLTVKVGNGISSELLKAAEEFN 394 (939)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCC-----Cccc--------eEEEEeCCCCHHHHHHHHHHCC
Confidence 56677888888888889999998854 444332 1222 1445554 35678889999999
Q ss_pred EEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHH
Q 012785 418 ILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLS 452 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~ 452 (456)
|.++. ..++.+++|+.- ++++++.+++.+.
T Consensus 395 i~l~~-----~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 395 INLRA-----VDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred Ceeee-----cCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 99776 235689999863 8899999999884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00012 Score=74.64 Aligned_cols=252 Identities=17% Similarity=0.129 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcCCC--------C---CCCcEEEEeCCCCCChhhhhhh
Q 012785 143 PEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSSQD--------A---SEPISVVSAAPYYSSYPSITDC 210 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~g--------d---~~~~~Vlv~~P~y~~~~~~~~~ 210 (456)
.++.+.+..++.. .+.+ . .-.=.+|+|+|+++.+++.+..... . ..| +|+++.-.+..+...++.
T Consensus 100 ~~~E~~~v~~l~~l~~~~-~-~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P-~ii~s~~aH~s~~Kaa~~ 176 (460)
T COG0076 100 AELEERVVNMLSDLLGAP-E-EASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKP-NIVCSETAHFSFEKAARY 176 (460)
T ss_pred HHHHHHHHHHHHHHhCCC-C-CCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCC-eEEecCcchhHHHHHHHH
Confidence 7888888888854 4443 2 2245689999999998887663211 0 123 799999999999999999
Q ss_pred cCCeEeeecc-------CccccccC---CCe--EEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC--CC--
Q 012785 211 VKSRLYKWAG-------DAKRFNKD---GPY--IELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ--YT-- 269 (456)
Q Consensus 211 ~g~~~~~~~~-------d~~~l~~~---~~~--~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~--~~-- 269 (456)
+|++...++. |.+.++.. .+. +|+-+-++=|||.+=+ ++|+++++++.+|.+|.+.- +.
T Consensus 177 lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~ 256 (460)
T COG0076 177 LGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEP 256 (460)
T ss_pred hCCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCc
Confidence 9988765444 44444321 222 3666677889999733 58999999999999999731 11
Q ss_pred -CC-CCCCCC-cEEEecCccccCCCCceEEEEEEeCHH-HHHHHHHHHhhc--------cCcCChHH-HHHHH-HHHHhh
Q 012785 270 -SI-TYPADH-DLMLFTVSKSTGHAGTRIGWALVKDME-VAKKMTKYIELN--------TIGVSKDS-QLRAA-KVLKVV 335 (456)
Q Consensus 270 -~~-~~~~~~-~i~i~S~SK~~g~~G~RiG~l~~~~~~-~~~~l~~~~~~~--------~~~~s~~~-q~~a~-~~L~~~ 335 (456)
.. ....++ +-+..++.|. |+.-.-.||++.+|++ +.+.+....... +...+..+ +.++. ..+..
T Consensus 257 ~~~~~f~l~~vdSIt~d~HK~-g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~- 334 (460)
T COG0076 257 DGRWDFGLEGVDSITVDGHKY-GLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRR- 334 (460)
T ss_pred cchhhcCCCCceEEEECcccc-cCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHH-
Confidence 11 122233 3456789995 4577889999999884 444443211111 12222333 22111 22221
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc---HHHHHHH
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE---IEDCESF 412 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~ 412 (456)
-| .+-++++.++..+..+.+.+.|++.+.+++...+ ..+-+.++.++. .......
T Consensus 335 -lG--------~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-------------~l~~V~fr~~~~~~~~~~~~~~ 392 (460)
T COG0076 335 -LG--------REGYRKLLDRTLELARYLAEELEKLGDFELVNEP-------------ELPIVAFRLKDDEDTLADLSER 392 (460)
T ss_pred -hC--------HhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-------------ccceEEEEcCCcccchhchHHH
Confidence 12 4556677777778889999999998756554422 222466666442 3334444
Q ss_pred HHhCCEEee
Q 012785 413 LKGNKILTR 421 (456)
Q Consensus 413 l~~~gI~v~ 421 (456)
+++.|..+.
T Consensus 393 ~~~~gw~v~ 401 (460)
T COG0076 393 LDRRGWQVP 401 (460)
T ss_pred HHhcCceee
Confidence 544555543
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0005 Score=63.99 Aligned_cols=255 Identities=15% Similarity=0.118 Sum_probs=148.3
Q ss_pred ceEEEccCHHHHHHHHHHHhcC---CCCCCCcEEEEeCCCCCChhhhhhhc-------CCe-----EeeeccCcccc---
Q 012785 164 HHIVVGTGSTQLFQAALYALSS---QDASEPISVVSAAPYYSSYPSITDCV-------KSR-----LYKWAGDAKRF--- 225 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~---~gd~~~~~Vlv~~P~y~~~~~~~~~~-------g~~-----~~~~~~d~~~l--- 225 (456)
+-++++++++||..++++...+ .. .|++.+-.|++........ |.. .+.+...+|-.
T Consensus 103 svc~F~NSGSEANDLALRLAR~ftkhq-----DvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK 177 (452)
T KOG1403|consen 103 SVCFFVNSGSEANDLALRLARNFTKHQ-----DVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGK 177 (452)
T ss_pred eEEEEecCCchhhHHHHHHHHhhcccC-----ceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccc
Confidence 4678999999999999987643 33 4777788888766543221 110 11111000000
Q ss_pred -------------------cc-------C--CCeEEEEcCCCCCCcccchH---------HhhhcCcEEEeeecCCCCCC
Q 012785 226 -------------------NK-------D--GPYIELVTSPNNPDGSVRQS---------VVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 226 -------------------~~-------~--~~~~i~v~~P~NPtG~~~~~---------l~~~~~~~iI~De~y~~~~~ 268 (456)
+. . +..+.+-.+-+.-.|.+++. -.+.+|...|.||++.+.+.
T Consensus 178 ~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGR 257 (452)
T KOG1403|consen 178 FRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGR 257 (452)
T ss_pred cccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccc
Confidence 00 0 11122222233344555542 24568999999999987544
Q ss_pred CCCC----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH--HHhhccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 269 TSIT----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK--YIELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 269 ~~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~--~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
.+-. ...+-+=-|.++.|.+| .|-+++.++.. +++++.+.. ...++++|.+|.+.+++.++++.+++.
T Consensus 258 vG~hyWafq~y~fiPDIVtmgKpmG-NGhPVa~Vatt-keIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E---- 331 (452)
T KOG1403|consen 258 VGSHYWAFQTYNFIPDIVTMGKPMG-NGHPVAAVATT-KEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDE---- 331 (452)
T ss_pred cchhhhhhhhhccccchheecccCC-CCCeeeEEecc-HHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhh----
Confidence 3321 11121112667999999 99999999996 999998876 345679999999999999999976543
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeec-Cc------cH---HH
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKC-EQ------EI---ED 408 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~-~~------~~---~~ 408 (456)
.+.++-++..+.|...|+++ +.+--.+.-| .|+-+++ ++ +. ..
T Consensus 332 ---------~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvG--------------LFiGIdLVkD~~tRtP~tk~A~~ 388 (452)
T KOG1403|consen 332 ---------NLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVG--------------LFIGIDLVKDRKTRTPDTKEAHW 388 (452)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHhhhccceeccccce--------------EEEeeeeecccccCCCcHHHHHH
Confidence 23333344444555555443 2221122222 2677765 21 11 22
Q ss_pred -HHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 409 -CESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 409 -~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+.++-+.++|++..- |+..+.+.|- ++-++|+.++.+..|.++|
T Consensus 389 ~v~rlke~y~VLlsaD---GPh~NilKiKPPmCFneena~e~v~~ld~iL 435 (452)
T KOG1403|consen 389 VVNRLKELYRVLLSAD---GPHRNILKIKPPMCFNEENADEFVLGLDEIL 435 (452)
T ss_pred HHHHHHHhhhEEEecC---CCCCceeecCCCcccChhhHHHHHHHHHHHH
Confidence 333444577888652 2345555554 3337888888888887765
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-05 Score=76.49 Aligned_cols=272 Identities=13% Similarity=0.136 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
+.+|.+.||++++. ++.|+...|- .++..++.++++.|| -|.+.+-.-.......+....+++.|..
T Consensus 141 HldlE~~iakF~G~-------E~aivYs~gF-~ti~S~ipafsKrGD----Ii~~de~~nfaIq~GlqlSRS~i~~Fkhn 208 (467)
T KOG1358|consen 141 HLDLEKRIAKFMGT-------EDAIVYSYGF-STIESAIPAFSKRGD----IIFVDEAVNFAIQKGLQLSRSTISYFKHN 208 (467)
T ss_pred ecccHHHHHHhhCC-------cceeeecccc-chhhhcchhhhccCc----EEEEehhhhHHHHHHHhhhhheeEEecCC
Confidence 57899999999985 5688888776 567778889999999 7777777666677777777767666653
Q ss_pred Ccccccc-----C----------CC-eEEEEcCCCCCCcccch--H---HhhhcCcEEEeeecCCCC----CCCCCC---
Q 012785 221 DAKRFNK-----D----------GP-YIELVTSPNNPDGSVRQ--S---VVNRSGGILVHDLAYYWP----QYTSIT--- 272 (456)
Q Consensus 221 d~~~l~~-----~----------~~-~~i~v~~P~NPtG~~~~--~---l~~~~~~~iI~De~y~~~----~~~~~~--- 272 (456)
|.++++. . .+ +.|++.----+||...+ + +..+|...+|.||.|+.. .-.++.
T Consensus 209 dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~ 288 (467)
T KOG1358|consen 209 DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHF 288 (467)
T ss_pred CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccC
Confidence 3333311 0 11 34444444556888766 3 667899999999999831 112222
Q ss_pred --CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 273 --YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 273 --~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
...+-+++++|++-+++-.| |+.++. .++-...+. ........++....+|...+..+... .
T Consensus 289 ~v~~~~iDiv~~sm~~alas~G---gFc~G~--~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~--------p 355 (467)
T KOG1358|consen 289 GVPITDIDIVTASMETALASGG---GFCAGK--SFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWN--------P 355 (467)
T ss_pred CCCccceeeeeecccccccccC---ceeecc--eeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhC--------c
Confidence 23456899999999987555 777663 333222222 22123344555555555555543222 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-------c---HHHHHHHHHhCC
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------E---IEDCESFLKGNK 417 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~---~~~~~~~l~~~g 417 (456)
.+.+.++.....+...|+....+.+.... ....+.+.+.. + .+.+.+.+...|
T Consensus 356 ----~~~~~L~~k~~~~H~~l~~~s~~~v~~~~-------------~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~ 418 (467)
T KOG1358|consen 356 ----EIVQPLRAKVAKFHAALSSNSGFIVSGSP-------------ESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEG 418 (467)
T ss_pred ----chhhhhhccccccchhhhcCCceEEecCc-------------CCceeeeeecccccchHHHHHHHHHHHHHHHhhc
Confidence 24445556556666777765444443211 11123344422 1 122333333347
Q ss_pred EEeecCCCC-C----CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHF-G----FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~f-g----~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+++.-...- + .-+..+||++.. ++|+++.+.+.|+++.
T Consensus 419 ~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~ 463 (467)
T KOG1358|consen 419 VLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVA 463 (467)
T ss_pred ceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 777643322 1 135579999875 8999999999998763
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=65.89 Aligned_cols=246 Identities=13% Similarity=0.128 Sum_probs=125.2
Q ss_pred EccCHHHHHHHHHHHh---cCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEeeeccCcccccc-CCCeEEEEcCCC
Q 012785 168 VGTGSTQLFQAALYAL---SSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYKWAGDAKRFNK-DGPYIELVTSPN 239 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~~~d~~~l~~-~~~~~i~v~~P~ 239 (456)
+-.|++.+-++++.+. .+..+ +|+++.-.++.+....+. .|.+++.++.+.++... +++.++++.+||
T Consensus 132 lyd~atA~aEa~~ma~r~~~~~~~----~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d~~~~a~v~vq~Pn 207 (429)
T PF02347_consen 132 LYDGATAAAEAMLMAVRATKRKRN----KVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTDDDDTAAVMVQNPN 207 (429)
T ss_dssp BSSCCHHHHHHHHHHHHHHTT-------EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB-STTEEEEEEESS-
T ss_pred CCChhHHHHHHHHHHHHhcccCCc----EEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCccccCeEEEEeecCC
Confidence 4456665555554443 22334 899999999998885444 68888888877655543 577899999997
Q ss_pred CCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCC--CCCCCcEEEecCccccCCC----CceEEEEEEeCHHHHH
Q 012785 240 NPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSIT--YPADHDLMLFTVSKSTGHA----GTRIGWALVKDMEVAK 307 (456)
Q Consensus 240 NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~--~~~~~~i~i~S~SK~~g~~----G~RiG~l~~~~~~~~~ 307 (456)
. .|.+-+ ++++++|.++|. ..++- ...+. ...+-+|++++ +|.||+| |=-.|++.++ +++..
T Consensus 208 ~-~G~~ed~~~i~~~~h~~gal~~~---~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~-~~l~r 281 (429)
T PF02347_consen 208 T-FGVFEDIKEIADIAHAAGALVIV---GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVR-EDLVR 281 (429)
T ss_dssp T-TSB--THHHHHHHHHHTT-EEEE---CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE--GGGGG
T ss_pred C-CceEeeHHHHHHHHHHcCCEEEE---ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEh-hhhhh
Confidence 5 566644 467889988875 23321 11121 23345777776 8877654 2236777776 44443
Q ss_pred HH----------------------------HHHHhhccCcCChHHHH-HHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 308 KM----------------------------TKYIELNTIGVSKDSQL-RAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 308 ~l----------------------------~~~~~~~~~~~s~~~q~-~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
.+ ++-+..+.++.+.-... ++...+.. - ..+-++++-+...
T Consensus 282 ~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~--~--------G~~GL~~iA~~~~ 351 (429)
T PF02347_consen 282 QLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAY--L--------GPEGLREIAERIH 351 (429)
T ss_dssp GS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHH--H--------HHHHHHHHHHHHH
T ss_pred hCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHH--h--------CHHHHHHHHHHHH
Confidence 32 11111233444433322 22222221 2 2677888999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISM 437 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~ 437 (456)
.+..++.+.|++.....+. .. .|++ |+....+. ..+.+.+.....|+.... ...+.+-+++
T Consensus 352 ~~A~yl~~~L~~~~~~~~~--~~---~f~e--------~v~~~~~~~~~~~l~~~~~~~gl~~~~-----~~~~~~li~~ 413 (429)
T PF02347_consen 352 LNAHYLAERLKKIYGLPFD--NP---FFFE--------FVVVFSKDKEVEELLKRGIEGGLNLRY-----PDDGALLICV 413 (429)
T ss_dssp HHHHHHHHHHCCTTBECSS--SS---SBSS--------EEEEESS-HHHHHHHHTT----EEEGG-----G-SSEEEEE-
T ss_pred HHHHHHHHHHHHhcCcccC--CC---Ccee--------eeeecCCcHHHHHHHHHHHhcCCCccc-----cCCCeEEEEc
Confidence 9999999999886222222 11 2232 45555442 122233333344533321 2345777887
Q ss_pred cC--ChhHHHHHHHHH
Q 012785 438 LD--RDENYNLFVQRL 451 (456)
Q Consensus 438 ~~--~~e~i~~~l~~L 451 (456)
.- ++|+|+.+++.|
T Consensus 414 TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 414 TETRTKEDIDRLVEAF 429 (429)
T ss_dssp -TT--HHHHHHHHH--
T ss_pred cCCCCHHHHHHHHhcC
Confidence 63 788888888754
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00084 Score=67.06 Aligned_cols=225 Identities=16% Similarity=0.125 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHH-HhcCccCC----CceEEEccCHHHHHHHHHHHhcC--------CCC--CCCcEEEEeCCCCCChhhh
Q 012785 143 PEFAKEVVRLHK-VVGNAITE----NHHIVVGTGSTQLFQAALYALSS--------QDA--SEPISVVSAAPYYSSYPSI 207 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~----~~~I~~t~G~~~al~~~~~~l~~--------~gd--~~~~~Vlv~~P~y~~~~~~ 207 (456)
.++++.+.+|+. ..|.+... ...=++|+|+++++..++.+... .|. ..+..|++.+-++......
T Consensus 78 ~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Ka 157 (373)
T PF00282_consen 78 TEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKA 157 (373)
T ss_dssp HHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHH
T ss_pred ccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHh
Confidence 678888888884 46666221 13567899999999877765532 111 1122677777788889999
Q ss_pred hhhcCCeEeeeccCccc------ccc------CC---CeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-
Q 012785 208 TDCVKSRLYKWAGDAKR------FNK------DG---PYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP- 266 (456)
Q Consensus 208 ~~~~g~~~~~~~~d~~~------l~~------~~---~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~- 266 (456)
+..+|+.++.++.|.++ +++ .+ +-+|+.+-..-.||.+=+ ++|+++++|+-+|-+|.+.
T Consensus 158 a~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~ 237 (373)
T PF00282_consen 158 ARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSA 237 (373)
T ss_dssp HHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGG
T ss_pred cceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccc
Confidence 99999999888776532 322 12 334555566777888733 4899999999999999972
Q ss_pred ----CCCCCCCCCCC-cEEEecCccccCCCCceEEEEEEeCHHHHHHHH----HHHh-------------hccCcCChHH
Q 012785 267 ----QYTSITYPADH-DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT----KYIE-------------LNTIGVSKDS 324 (456)
Q Consensus 267 ----~~~~~~~~~~~-~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~----~~~~-------------~~~~~~s~~~ 324 (456)
.+......-++ +=+..++.|.++ .-...|+++.+++....... .+.. ..++..|. .
T Consensus 238 ~~~~~~~~~~~gi~~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~ 315 (373)
T PF00282_consen 238 LLSPEYRHLLFGIERADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-R 315 (373)
T ss_dssp GGHCTTGGGGTTGGGESEEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-H
T ss_pred cccccccccccccccccccccchhhhhc-CCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccc-c
Confidence 22222222222 455678999887 55789999998765443221 1111 01233444 2
Q ss_pred HHHHHHHHHhhh-CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 012785 325 QLRAAKVLKVVS-DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378 (456)
Q Consensus 325 q~~a~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 378 (456)
..++...+. +. -| .+-+++..++..+..+.+.+.|++.+.+++..
T Consensus 316 ~~alk~w~~-l~~~G--------~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~ 361 (373)
T PF00282_consen 316 FRALKLWAT-LKSLG--------REGYRERIRRCIELARYLADRLRKDPRFELVN 361 (373)
T ss_dssp HHHHHHHHH-HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred chHHHHHHH-HHhcC--------HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 222222111 11 12 45667777777888899999999987766654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.057 Score=53.28 Aligned_cols=250 Identities=14% Similarity=0.118 Sum_probs=145.5
Q ss_pred EccCHHHHHHHHHHHhcCC---CCCCCcEEEEeCCCCCChhhhhhh----cCCeEeeeccC-cccccc---CCCeEEEEc
Q 012785 168 VGTGSTQLFQAALYALSSQ---DASEPISVVSAAPYYSSYPSITDC----VKSRLYKWAGD-AKRFNK---DGPYIELVT 236 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~---gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~~~d-~~~l~~---~~~~~i~v~ 236 (456)
.-.|+|.+-++++.+..-. .. +|+++.-.|+.+....+. +|.+++..+.| .+.++. ..+.++++.
T Consensus 142 m~DeaTAaAEAm~ma~r~~k~k~~----~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQ 217 (450)
T COG0403 142 MLDEATAAAEAMLMAKRVTKKKRN----KFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQ 217 (450)
T ss_pred hhhhHHHHHHHHHHHHHhhcCcCc----eEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEe
Confidence 4455666555555554322 24 899999999999888765 35666655443 333332 255788888
Q ss_pred CCCCCCcccchH------HhhhcCcEEEeeecCCCCCCCCC---CCCCCCcEEEecCccccCC----CCceEEEEEEeCH
Q 012785 237 SPNNPDGSVRQS------VVNRSGGILVHDLAYYWPQYTSI---TYPADHDLMLFTVSKSTGH----AGTRIGWALVKDM 303 (456)
Q Consensus 237 ~P~NPtG~~~~~------l~~~~~~~iI~De~y~~~~~~~~---~~~~~~~i~i~S~SK~~g~----~G~RiG~l~~~~~ 303 (456)
+|+ -.|...++ .++.++.++|+ +.++--..+ |...+-+|++++-.- ||+ .|=..||..+. +
T Consensus 218 yP~-~~G~~~~d~~~l~~~~h~~~al~~v---~aDplaL~LL~pPGe~GADIvvG~~Qr-fGvPmgfGGPhag~fA~~-~ 291 (450)
T COG0403 218 YPN-TFGIVEEDLRALIEAAHSAGALVIV---AADPLALGLLKPPGEFGADIVVGSAQR-FGVPMGFGGPHAGYFAVK-D 291 (450)
T ss_pred cCC-CCCccchhHHHHHHHHhhcCCEEEE---EechhHhhccCCccccCCceEEecCcc-cCCCcCCCCcceeeeeEh-H
Confidence 886 46755442 56778887765 333211111 234456888888665 343 35567888886 4
Q ss_pred HHHHH----------------------------HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 304 EVAKK----------------------------MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 304 ~~~~~----------------------------l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
++..+ +++-+..++.|.+......++.+.-+. .| .+-++++.+
T Consensus 292 ~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~-hG--------p~GLk~iA~ 362 (450)
T COG0403 292 EFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVY-HG--------PQGLKEIAE 362 (450)
T ss_pred hHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHH-hC--------hHHHHHHHH
Confidence 44332 222222234454443333333333322 23 567888888
Q ss_pred HHHHHHHHHHHHHHhcC-CccccCCCCcccccccccCCCCCceEEeecC-ccHHHHHHHHHhCCEEeecCCCCCCCCCeE
Q 012785 356 QMSTRWKQLRMAVQKSG-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-QEIEDCESFLKGNKILTRSGKHFGFSPKYV 433 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~gI~v~pg~~fg~~~~~i 433 (456)
+..+...++.+.|++.+ ++.+.. . . ||+ =+.++++ +..+.+.......|+.++. .+...+
T Consensus 363 r~~~~a~~la~~L~~~~~g~~~~~-~-~---fFd--------t~~v~~~~~~~~~l~~~~~~~G~~L~~-----~~~~~~ 424 (450)
T COG0403 363 RIHRLAAYLAAGLKEIGAGVELVF-D-H---FFD--------TFTVRVPEEVAEALLAAAIAGGINLRR-----VDADTV 424 (450)
T ss_pred HHHHHHHHHHHHHhhcCCceEecc-c-c---cee--------eEEEecchhHHHHHHHHHHhcCCceee-----ecCCce
Confidence 88899999999999654 232221 1 1 221 1555665 3344555566667777765 224455
Q ss_pred EEEecC--ChhHHHHHHHHHHhh
Q 012785 434 RISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 434 Ris~~~--~~e~i~~~l~~L~~~ 454 (456)
=+++.- ++++++.+++.+...
T Consensus 425 ~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 425 LIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred EEEeecccCHHHHHHHHHHHhhh
Confidence 666643 688999999888754
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0027 Score=62.26 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=115.1
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-----CCCCChhhhhhhcCCeEeeeccC----cccc---ccCCC
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAA-----PYYSSYPSITDCVKSRLYKWAGD----AKRF---NKDGP 230 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-----P~y~~~~~~~~~~g~~~~~~~~d----~~~l---~~~~~ 230 (456)
.+.+++++..+.++.+++.++..++ +|++.. ++.+.....++..|++++.+.-. ..++ ...++
T Consensus 83 aea~~ivnnn~aAVll~~~al~~~~-----EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~tn~t~~~d~~~AIne~t 157 (395)
T COG1921 83 AEAAAIVNNNAAAVLLTLNALAEGK-----EVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTTNRTHLKDYELAINENT 157 (395)
T ss_pred hhheeeECCcHHHHHHHHhhhccCC-----eEEEEccccccCCCCChhHHHHHcCCEEEEecccCcCCHHHHHHHhccCC
Confidence 4678999999999999999988754 454421 57788999999999999976531 1122 12345
Q ss_pred eEEE-EcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-----CCCCCCCCCCCcEEEecCccccCCCCceEEEEE
Q 012785 231 YIEL-VTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-----QYTSITYPADHDLMLFTVSKSTGHAGTRIGWAL 299 (456)
Q Consensus 231 ~~i~-v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-----~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~ 299 (456)
++++ +-++|-+--..++ ++++++|+++|.|.+=.+. ..... -..+-+++++|--|.+| |-+-|.++
T Consensus 158 a~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~-la~GaDLV~~SgdKllg--GPqaGii~ 234 (395)
T COG1921 158 ALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREA-LALGADLVSFSGDKLLG--GPQAGIIV 234 (395)
T ss_pred eeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHH-HhcCCCEEEEecchhcC--CCccceEe
Confidence 5443 4344432212222 3789999999999976542 11111 23356899999999875 55689999
Q ss_pred EeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhC
Q 012785 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
+. +++++++++.--.-.+-+..+...+..+.|+....
T Consensus 235 Gk-KelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~ 271 (395)
T COG1921 235 GK-KELIEKLQSHPLKRALRVDKETLAALEAALELYLQ 271 (395)
T ss_pred ch-HHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcC
Confidence 97 99999998775545677888888888888886544
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.13 Score=49.74 Aligned_cols=291 Identities=14% Similarity=0.134 Sum_probs=159.8
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCc-EEEEeCCCCCC-hhhh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPI-SVVSAAPYYSS-YPSI 207 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~-~Vlv~~P~y~~-~~~~ 207 (456)
.|.-..+ +-.|+.++.+.++- +.++.|.=+..|=+++...+.++++..|. +.++++-.|.- ...-
T Consensus 74 AYagsrs-----~~~L~~avkdifGf--------q~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h 140 (471)
T COG3033 74 AYAGSRS-----YYALADAVKDIFGF--------QYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGH 140 (471)
T ss_pred hhccccc-----HHHHHHHHHHhcCc--------eeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHH
Confidence 3777777 58999999998863 57777776666666677777776654332 33444444433 3444
Q ss_pred hhhcCCeEeeec--------------c--Ccccccc-------CCCeEEEEcCCCC-CCcccch--------HHhhhcCc
Q 012785 208 TDCVKSRLYKWA--------------G--DAKRFNK-------DGPYIELVTSPNN-PDGSVRQ--------SVVNRSGG 255 (456)
Q Consensus 208 ~~~~g~~~~~~~--------------~--d~~~l~~-------~~~~~i~v~~P~N-PtG~~~~--------~l~~~~~~ 255 (456)
.+..|+.+..+. . |.+.++. ++.-.|+++--+| -.|+..| ++|++|++
T Consensus 141 ~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~i 220 (471)
T COG3033 141 IQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDI 220 (471)
T ss_pred HHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCC
Confidence 555677665332 2 2223321 2333444433344 4455555 38999999
Q ss_pred EEEeeecCC----------CCCCCC--CCCC-----CCCcEEEecCccccCCCCceEEEEEEeCHH---HHHHHHHHHh-
Q 012785 256 ILVHDLAYY----------WPQYTS--ITYP-----ADHDLMLFTVSKSTGHAGTRIGWALVKDME---VAKKMTKYIE- 314 (456)
Q Consensus 256 ~iI~De~y~----------~~~~~~--~~~~-----~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~---~~~~l~~~~~- 314 (456)
.++.|.+-. ++.|.. +... .--+-...|.-|. |+.-+ -|++...|+. +...++...-
T Consensus 221 pvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~ 298 (471)
T COG3033 221 PVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEECRTLVVV 298 (471)
T ss_pred cEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccc-ceecc-ccEEEecCccHHHHHHHHHhheEe
Confidence 999995432 233322 1100 0012223444453 22211 2677887764 4444444321
Q ss_pred ----hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccccc
Q 012785 315 ----LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 315 ----~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~ 390 (456)
.+..|.+.-...+.+..|. ++. ..+|++....+ -++|.+.|.+.+ +.+..|.||...|.+-
T Consensus 299 ~eG~~tYGgl~GrdmealAvGL~---e~~------~~~yl~~Rv~Q----v~YL~~~l~~~G-Vpi~~paGGHavfvda- 363 (471)
T COG3033 299 QEGFPTYGGLAGRDMEALAVGLR---EGV------NFDYLAHRVAQ----VQYLADGLEEAG-VPIVQPAGGHAVFVDA- 363 (471)
T ss_pred eccccccCcccchhHHHHHHHHH---Hhc------CcHHHHHHHHH----HHHHHHHHHhcC-CeeEecCCCceEEeeh-
Confidence 1223444445555566665 231 13455444433 356778888876 5577788887432210
Q ss_pred CCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCC--CCC----------CCeEEEEecC---ChhHHHHHHHHH
Q 012785 391 FEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHF--GFS----------PKYVRISMLD---RDENYNLFVQRL 451 (456)
Q Consensus 391 ~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~f--g~~----------~~~iRis~~~---~~e~i~~~l~~L 451 (456)
.- ++..+|. ......++.++.||...--..| +.+ -+.+|+++.+ +.+.++..++.+
T Consensus 364 ----~~-~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~ 438 (471)
T COG3033 364 ----GK-FLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAF 438 (471)
T ss_pred ----hh-hcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHH
Confidence 00 0111221 2345667778999988766555 211 2469999864 788899999888
Q ss_pred Hhhh
Q 012785 452 SKIL 455 (456)
Q Consensus 452 ~~~l 455 (456)
+++.
T Consensus 439 ~~l~ 442 (471)
T COG3033 439 KALK 442 (471)
T ss_pred HHHH
Confidence 8764
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.087 Score=51.04 Aligned_cols=268 Identities=13% Similarity=0.065 Sum_probs=149.9
Q ss_pred HhcCccCCCceEEEc-cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh-hhhhhcCC--eEeeec---------cC
Q 012785 155 VVGNAITENHHIVVG-TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP-SITDCVKS--RLYKWA---------GD 221 (456)
Q Consensus 155 ~~g~~~~~~~~I~~t-~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~-~~~~~~g~--~~~~~~---------~d 221 (456)
.++.+. .-+|++. .|++.....+...|..... .-.+..-.|.... .-++..+- ++.... .|
T Consensus 62 Ll~iPd--~Y~VlflqGGat~qf~~~p~nLl~~~~----~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~ 135 (365)
T COG1932 62 LLNIPD--DYKVLFLQGGATGQFAMAPMNLLGKRG----TDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPD 135 (365)
T ss_pred HhCCCC--CceEEEEcCccHHHHHHHHHhhhcccC----ceeEeeeehhHhHHHHHHHhcccccccccceeccCccCCCC
Confidence 344443 2356554 5667778888888876653 2134444444322 12233332 221110 12
Q ss_pred ccccccCCCeEEEEcCCCCCC-cccchHHhhh-cCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEE
Q 012785 222 AKRFNKDGPYIELVTSPNNPD-GSVRQSVVNR-SGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWAL 299 (456)
Q Consensus 222 ~~~l~~~~~~~i~v~~P~NPt-G~~~~~l~~~-~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~ 299 (456)
.+.++..+..++++-++|+-+ |+-+++.=.. .+.++|.|..-.-.+ .++ +...-+++..+.=|.+|..| ++.++
T Consensus 136 ~~~~~~~~~~ayv~~~~NeTi~Gv~v~~~p~~~~~~~~v~D~SS~ils-r~i-Dvsk~dviyagaQKnlGpaG--ltvvI 211 (365)
T COG1932 136 LSKWDFSDNDAYVHFCWNETISGVEVPELPDIGSDGLLVADASSAILS-RPI-DVSKYDVIYAGAQKNLGPAG--LTVVI 211 (365)
T ss_pred hhhcccCCCccEEEEecCCcccceEccCCCCCCCCceEEEecccHHhc-CCC-ChhHcceEEEehhhccCccc--eEEEE
Confidence 222222221333333455433 7666642111 127888886322110 111 23345788889999999888 88899
Q ss_pred EeCHHHHHHHHHH------------HhhccCc-CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 300 VKDMEVAKKMTKY------------IELNTIG-VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 300 ~~~~~~~~~l~~~------------~~~~~~~-~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
+. +++.+++... ....+++ ++.++-+.....++++... .-++.+.++-+++.+.|++
T Consensus 212 vr-~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~---------GGl~~~~~rn~~ka~~LY~ 281 (365)
T COG1932 212 VR-PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQ---------GGLEALEARNQAKAQLLYD 281 (365)
T ss_pred Ec-HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHH
Confidence 97 8888887664 1112333 4455566666666665542 2466778888899999999
Q ss_pred HHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--Chh
Q 012785 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDE 442 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e 442 (456)
.+.+.+...-..-+. ..+.. -+.+++.. -++.+...++++|+...-|. ...+.+|+++.. +.|
T Consensus 282 ~id~s~fy~~~v~~~---------~RS~m-nV~f~~~~~~ld~~fv~eae~~gl~~lkGh---r~vgGmRasiynA~~~e 348 (365)
T COG1932 282 WIDKSDFYRNLVAKA---------NRSRM-NVTFTLVDAELDKGFVAEAEAAGLIYLKGH---RSVGGLRASIYNAVPLE 348 (365)
T ss_pred HHHhCCccccccchh---------hccce-eEEEEcCcHHHHHHHHHHHHHcCCceeccc---cCCCceeeeeecCCCHH
Confidence 999875332211111 11222 25555543 24556677778888887773 224449999764 888
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
+++.+++-|+.+.
T Consensus 349 ~veaL~~fm~~f~ 361 (365)
T COG1932 349 DVEALTDFMDWFE 361 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888887653
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0024 Score=61.61 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=79.8
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEE-eCCCCCChhhhh----------hhcCCeEeeecc------Ccccccc---CC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVS-AAPYYSSYPSIT----------DCVKSRLYKWAG------DAKRFNK---DG 229 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv-~~P~y~~~~~~~----------~~~g~~~~~~~~------d~~~l~~---~~ 229 (456)
.++|+||.+++..++.||| +++. .-.=|.-...+. +..|++...+++ |.+.++. .+
T Consensus 79 vSGTHAi~~~Lfg~LrpGD----~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~ 154 (403)
T PF06838_consen 79 VSGTHAIALALFGVLRPGD----ELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKPN 154 (403)
T ss_dssp -SHHHHHHHHHHHH--TT-----EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHTT
T ss_pred cchHHHHHHHHHhcCCCCC----eEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhccC
Confidence 4567999999999999999 7774 334444444443 333555555544 3333432 36
Q ss_pred CeEEEEcCCCCCCcccch---------HH---hh--hcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCc--
Q 012785 230 PYIELVTSPNNPDGSVRQ---------SV---VN--RSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGT-- 293 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~---------~l---~~--~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~-- 293 (456)
+|++++-- -.|..+. ++ ++ +.++++++|..|.++.-..-|..-+-+++.+|+=|..| .|+
T Consensus 155 tk~v~IQR---SrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpG-GgiAp 230 (403)
T PF06838_consen 155 TKMVLIQR---SRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPG-GGIAP 230 (403)
T ss_dssp EEEEEEE----S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGG-TTT-S
T ss_pred ceEEEEec---CCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCC-CCccC
Confidence 78888842 2344432 12 23 38999999999997433222233456899999999987 665
Q ss_pred eEEEEEEeCHHHHHHHHHHHh
Q 012785 294 RIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 294 RiG~l~~~~~~~~~~l~~~~~ 314 (456)
--||++++ ++++++......
T Consensus 231 tGGYIaGr-~~lVe~~a~RLT 250 (403)
T PF06838_consen 231 TGGYIAGR-KDLVERAAYRLT 250 (403)
T ss_dssp S-EEEEES-HHHHHHHHHHHS
T ss_pred cCCEEech-HHHHHHHHhhhc
Confidence 35899997 999998876543
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.085 Score=50.95 Aligned_cols=271 Identities=15% Similarity=0.121 Sum_probs=151.3
Q ss_pred HHhcCccCCC-ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChhhhhhhcCCeE----e-----eeccC-
Q 012785 154 KVVGNAITEN-HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYPSITDCVKSRL----Y-----KWAGD- 221 (456)
Q Consensus 154 ~~~g~~~~~~-~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~~~~~~~g~~~----~-----~~~~d- 221 (456)
..++.....- =+|-.-+|+ -|...+-.++++|++ +|.-.+ |.=.-..+....-+-++ + ++.+|
T Consensus 97 eaF~ldp~kWGVNVQp~SGS-PANfavYtall~Ph~----RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~ 171 (477)
T KOG2467|consen 97 EAFGLDPEKWGVNVQPYSGS-PANFAVYTALLKPHE----RIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDP 171 (477)
T ss_pred HHhCCCHHHCceeeccCCCC-chhhHHHhhhcCCCC----eeeeccCCCCCccccccccCCceeeeeeeecccCceeeCC
Confidence 4455543321 244445555 677788889999998 766433 42211111222112111 1 23333
Q ss_pred ------ccccccC----CCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCC-CCCC-CCCCCCCC-cEEEecCc
Q 012785 222 ------AKRFNKD----GPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW-PQYT-SITYPADH-DLMLFTVS 285 (456)
Q Consensus 222 ------~~~l~~~----~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~-~~~~-~~~~~~~~-~i~i~S~S 285 (456)
-|.|+.. ++++|+-..-..|--..+. ++|.+-|.+++.|.++.- .-.. -+++..+. +|+..|-.
T Consensus 172 ~TG~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTH 251 (477)
T KOG2467|consen 172 STGYIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTH 251 (477)
T ss_pred CCCceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeecccc
Confidence 3444432 6788765322222222222 389999999999998862 1111 13344443 78888999
Q ss_pred cccCCCCceEEEEEEeCH---------------HHHHHHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 286 KSTGHAGTRIGWALVKDM---------------EVAKKMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~---------------~~~~~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
|++ -|=|-|.+... + ++-+++...... .-.|+..-...+.+.+|+... ...
T Consensus 252 KsL--RGPRg~mIFyR-kGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~----------tpe 318 (477)
T KOG2467|consen 252 KSL--RGPRGAMIFYR-KGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM----------TPE 318 (477)
T ss_pred ccc--cCCcceeEEEe-ccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC----------CHH
Confidence 975 67777877664 2 122233222111 122333334444455555321 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCC
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHF 426 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~f 426 (456)
++...+++.++.+.+.+.|.+.+. .+.. ||- +...+.+++.. +...++..|+.-+|...--..+
T Consensus 319 fk~Yq~qV~~Nakala~~l~~~Gy-~lvt--gGT----------DnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvp 385 (477)
T KOG2467|consen 319 FKEYQKQVLKNAKALASALISRGY-KLVT--GGT----------DNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVP 385 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc-eEec--CCc----------cceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCC
Confidence 555667778888899999988763 2221 221 11146667753 6677888888888887665556
Q ss_pred CC----CCCeEEEEec----C--ChhHHHHHHHHHHhhh
Q 012785 427 GF----SPKYVRISML----D--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 g~----~~~~iRis~~----~--~~e~i~~~l~~L~~~l 455 (456)
|. .++.|||... + .++++++..+-|.+.+
T Consensus 386 GD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 386 GDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred CCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence 53 5789999842 1 5788888877776653
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0076 Score=57.63 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=108.3
Q ss_pred eEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCCC-----CCcEEEecCccccCCCCceEE
Q 012785 231 YIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYPA-----DHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~~-----~~~i~i~S~SK~~g~~G~RiG 296 (456)
.++++..-|..-|--.. +++++|++.+|+||++.+.+-++-.-.. +.-.=+.||||-|- .| |
T Consensus 273 aaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q-~g---G 348 (484)
T KOG1405|consen 273 AAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQ-TG---G 348 (484)
T ss_pred EEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhh-cC---c
Confidence 44555433655554322 3899999999999999865444321000 11122457999986 54 5
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----C
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----G 372 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~ 372 (456)
|.. +++++- =+.++.++++...+.-...+.++++.+.+ ++. .+..+...+.|...|.++ +
T Consensus 349 ffh--~~~frp-n~pYrifNTWmGdP~k~lll~~vv~~I~~---------~~L----l~n~~~vG~~l~~gL~~Lq~~~p 412 (484)
T KOG1405|consen 349 FFH--DEEFRP-NEPYRIFNTWMGDPSKNLLLEEVVQEIKR---------EDL----LNNVAHVGKALLKGLLELQAKYP 412 (484)
T ss_pred ccc--CcccCC-CchHHHhhhhcCChHHHHHHHHHHHHHhH---------HHH----HHHHHHHHHHHHHHHHHHHHhCc
Confidence 544 344432 12345556777777666666777775544 233 334444445555555443 3
Q ss_pred C-ccccCCCCcccccccccCCCCCceEEeecCcc--HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHH
Q 012785 373 L-FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQ 449 (456)
Q Consensus 373 ~-~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~ 449 (456)
. +.-.+.. |.|+-++++.. .+.+...++-+||.+-- +|...=.+|-++.-.+...+.+++
T Consensus 413 ~~~~~~RGr--------------GTF~a~d~ps~~~Rdk~i~~~~~nGv~~GG---Cg~~siRfRPsLvf~~~Ha~i~l~ 475 (484)
T KOG1405|consen 413 GKINNLRGR--------------GTFIAWDCPSGSIRDKLILIARLNGVNLGG---CGDKSIRFRPSLVFRKHHADIFLD 475 (484)
T ss_pred hhhhccccc--------------ceEEEEeCCChHHHHHHHHHHHHcCceecc---cccceeeeccceeehhhhHHHHHH
Confidence 2 2222333 34677788753 45677788888887643 332223345555447778888899
Q ss_pred HHHhhhC
Q 012785 450 RLSKILS 456 (456)
Q Consensus 450 ~L~~~l~ 456 (456)
++.+++.
T Consensus 476 ~~~k~l~ 482 (484)
T KOG1405|consen 476 IFDKILA 482 (484)
T ss_pred HHHHHhc
Confidence 9988763
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=63.68 Aligned_cols=201 Identities=17% Similarity=0.152 Sum_probs=55.2
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCC---CC---CChhhhhhhcCCeEeeecc-------CccccccCC
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAP---YY---SSYPSITDCVKSRLYKWAG-------DAKRFNKDG 229 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P---~y---~~~~~~~~~~g~~~~~~~~-------d~~~l~~~~ 229 (456)
.+..+++|+...|+.+++.++... . +|++..- .+ +...++.+..|++++.+.. |.+.-..++
T Consensus 62 AeaA~VvNnnaAAv~L~l~~la~~-~----EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN~t~~~Dye~AI~e~ 136 (367)
T PF03841_consen 62 AEAALVVNNNAAAVLLALNTLAKG-K----EVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTNRTHLSDYEKAITEN 136 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-c----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356778888889999999888654 3 6776542 12 2255677778888886543 222212246
Q ss_pred CeEEEEcCCCCCC--c---cc----chHHhhhcCcEEEeeecCC--------C-CCCCCCC--CCCCCcEEEecCccccC
Q 012785 230 PYIELVTSPNNPD--G---SV----RQSVVNRSGGILVHDLAYY--------W-PQYTSIT--YPADHDLMLFTVSKSTG 289 (456)
Q Consensus 230 ~~~i~v~~P~NPt--G---~~----~~~l~~~~~~~iI~De~y~--------~-~~~~~~~--~~~~~~i~i~S~SK~~g 289 (456)
+.+++-..++|-. | .+ +.++++++++++|+|-.=. + +.-..+. -..+-+++++|=-|.+|
T Consensus 137 Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLG 216 (367)
T PF03841_consen 137 TAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLG 216 (367)
T ss_dssp ------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSS
T ss_pred ccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCC
Confidence 6777766777752 2 22 1148899999999997541 1 1111121 23456899999999987
Q ss_pred CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012785 290 HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKP-SGSEDECFFEFTNHQMSTRWKQLRMAV 368 (456)
Q Consensus 290 ~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~L 368 (456)
-|- .|.++++ +++++++++-.-.-.+-+..+...+..+.|+...+.... +.--.-+.+....+.+++|.+.+.+.|
T Consensus 217 GPQ--aGiI~Gk-k~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l 293 (367)
T PF03841_consen 217 GPQ--AGIIVGK-KELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQL 293 (367)
T ss_dssp S-S---EEEEEE-HHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-----------------------------------
T ss_pred CCC--eEEEEeC-HHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc
Confidence 565 7999998 999999988765567888999999988888865432100 000012335556677777777777777
Q ss_pred Hhc
Q 012785 369 QKS 371 (456)
Q Consensus 369 ~~~ 371 (456)
+..
T Consensus 294 ~~~ 296 (367)
T PF03841_consen 294 KAA 296 (367)
T ss_dssp ---
T ss_pred ccc
Confidence 654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.21 Score=54.97 Aligned_cols=225 Identities=9% Similarity=0.044 Sum_probs=129.8
Q ss_pred EEEEeCCCCCChhhhhhh----cCCeEeeeccCccccccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecC
Q 012785 193 SVVSAAPYYSSYPSITDC----VKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAY 263 (456)
Q Consensus 193 ~Vlv~~P~y~~~~~~~~~----~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y 263 (456)
+|+|++-.+|.+..+.+. .|++++. .|.+.....++..+++.+||. .|.+.+ +++++.|.++|. -
T Consensus 170 ~~~v~~~~hP~~~~v~~t~~~~~g~~i~~--~~~~~~~~~~~~~v~vq~P~~-~G~i~d~~~i~~~~h~~gal~~~-~-- 243 (954)
T PRK12566 170 RFFVDEHCHPQTLSVLRTRAEGFGFELVV--DAVDNLAAHAVFGALLQYPDT-HGEIRDLRPLIDQLHGQQALACV-A-- 243 (954)
T ss_pred EEEECCCCCHHHHHHHHHhhhcCCcEEEE--cchhhcCCCCEEEEEEECCCC-ceEEccHHHHHHHHHHcCCEEEE-E--
Confidence 899999999888876554 4666654 233333333567888888863 577744 367778887663 2
Q ss_pred CCC-CCCCC--CCCCCCcEEEec---CccccCCCCceEEEEEEeCHHHHHHH----------------------------
Q 012785 264 YWP-QYTSI--TYPADHDLMLFT---VSKSTGHAGTRIGWALVKDMEVAKKM---------------------------- 309 (456)
Q Consensus 264 ~~~-~~~~~--~~~~~~~i~i~S---~SK~~g~~G~RiG~l~~~~~~~~~~l---------------------------- 309 (456)
.++ ...-+ +...+-+|++++ |.=-+|..|=-.||+.+. +++..+|
T Consensus 244 ~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~-~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHI 322 (954)
T PRK12566 244 ADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACR-DDYKRAMPGRIIGVSRDARGNTALRMALQTREQHI 322 (954)
T ss_pred eCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeeh-HHHHhhCCCCccceeecCCCCeeeehhhhHHHHHh
Confidence 221 11111 233445677662 222223233346787776 5444432
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
++-+..+..+.+.-..+.++.+.-.. .| .+-++++.++...+..++.+.|.+.+ +++... .||+
T Consensus 323 RReKAtSNICT~qaL~A~~a~~Y~~~-~G--------p~Gl~~ia~~~~~~a~~l~~~l~~~g-~~~~~~-----~fF~- 386 (954)
T PRK12566 323 RREKANSNICTAQVLLANIAGFYAVY-HG--------PEGLKRIAQRVHRLTAILAAGLEAKG-IKRLNR-----HFFD- 386 (954)
T ss_pred hhccccchhhHHHHHHHHHHHHHHHH-hC--------hHHHHHHHHHHHHHHHHHHHHHHhcC-CccccC-----Cccc-
Confidence 22222233444333333333333221 22 55677777888888889999998844 444321 2232
Q ss_pred cCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHH
Q 012785 390 AFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLS 452 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~ 452 (456)
=+.+++....+.+.+...++||-++-- +++.+.||+.- +.++++.++..+.
T Consensus 387 -------~~~v~~~~~~~~~~~~a~~~~~n~r~~-----~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 387 -------TLTLEVGGAQAAIIESAEAARINLRIL-----GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred -------eEEEEccCCHHHHHHHHHHCCCeeEEe-----CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 144455324667778888899988862 35678888863 7788888888773
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.11 Score=51.35 Aligned_cols=272 Identities=12% Similarity=0.017 Sum_probs=133.8
Q ss_pred HHHHhcCccCCCceEEEccCHHH-HHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------
Q 012785 152 LHKVVGNAITENHHIVVGTGSTQ-LFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-------- 220 (456)
Q Consensus 152 ~~~~~g~~~~~~~~I~~t~G~~~-al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-------- 220 (456)
+++..|.... ...++.+.+|. .+.+.+.++. +.++ .|+.+.-..-.-...+..+|++++-++.
T Consensus 65 ~~~~~G~~~~--~~~~~vP~atgm~l~l~l~~l~~r~~a~----~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~ 138 (389)
T PF05889_consen 65 ALRLAGLRSV--KSCFVVPMATGMSLTLCLLALRMRPKAK----YVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELI 138 (389)
T ss_dssp HHHHTTHTTH--CEEEEESS-HHHHHHHHHHHHHHHCT------EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEE
T ss_pred HHHHcCCccc--cceEEEecccccHHHHHHHHHhcccCCc----eEEEeeccccchHHHHHhcCCeEEEeeccCCCCeee
Confidence 3455565533 34555555443 3455555554 3455 6776665444445566777998775542
Q ss_pred -Ccccccc------CCCeEEEEcCC-----CCCCcc-cchHHhhhcCcEEEeeecCCCCCCCC---C--CCCCCC-cEEE
Q 012785 221 -DAKRFNK------DGPYIELVTSP-----NNPDGS-VRQSVVNRSGGILVHDLAYYWPQYTS---I--TYPADH-DLML 281 (456)
Q Consensus 221 -d~~~l~~------~~~~~i~v~~P-----~NPtG~-~~~~l~~~~~~~iI~De~y~~~~~~~---~--~~~~~~-~i~i 281 (456)
|.+.++. ....+.+++.+ ++|.-. -+.++|+++|++.|+-.||.=....- + ....++ ++++
T Consensus 139 td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~v 218 (389)
T PF05889_consen 139 TDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFV 218 (389)
T ss_dssp EHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEE
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceee
Confidence 1222221 13344455433 444411 23359999999999999998321100 0 011122 5889
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
-|.-|.|- -+.--+-+..+++..+..+.+....-.+..+.+.-......|. ..-........++..
T Consensus 219 qS~dkNF~-VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG-------------~~g~~~ll~~r~~~f 284 (389)
T PF05889_consen 219 QSTDKNFM-VPVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLG-------------CTGYGALLKERKASF 284 (389)
T ss_dssp EEHHHHHC-EESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
T ss_pred eecCCCEE-ecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHh-------------hhHHHHHHHHHHHHH
Confidence 99999994 3333355666678888887765432233333333222222222 222333333334444
Q ss_pred HHHHHHHH----hcCCccccCCCCcccccccccCCCCCceEEeecC-------ccHHHHHHHHHhCCEE----eecCCCC
Q 012785 362 KQLRMAVQ----KSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-------QEIEDCESFLKGNKIL----TRSGKHF 426 (456)
Q Consensus 362 ~~l~~~L~----~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~~~l~~~gI~----v~pg~~f 426 (456)
..+.+.|+ +.+..-...|.- .--+-+.++ .+..++...|..+||. |.|+..+
T Consensus 285 ~~l~erl~~~aee~~e~ll~~p~N-------------~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~ 351 (389)
T PF05889_consen 285 PYLKERLKKWAEEVGERLLETPRN-------------HISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKK 351 (389)
T ss_dssp HHHHHHHHHHHHHTTEEBSSSTT--------------SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCE
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCC-------------CeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCc
Confidence 44444444 333111111111 011233333 1346788888888885 3333333
Q ss_pred CC------CCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 427 GF------SPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 g~------~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
.. ...|+-++-+ .++||++.++++|+++++
T Consensus 352 ~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 352 QTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred ccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 11 2468888432 399999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.13 Score=51.28 Aligned_cols=283 Identities=14% Similarity=0.143 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhc---C--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEe
Q 012785 143 PEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALS---S--QDASEPISVVSAAPYYSSYPSITDCVKSRLY 216 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~ 216 (456)
.++..+..+++.. ++.+ . ..-=..|.|+++++.++...-. . .|-..| .++++.-....+...++.+++++.
T Consensus 119 ~~~e~~~Vnm~~~L~~~~-~-~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p-~iv~~~~v~~a~eK~a~yf~v~l~ 195 (491)
T KOG1383|consen 119 RKLEAECVNMIANLFNAP-S-DSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKP-NIVTPQNVHAAFEKAARYFEVELR 195 (491)
T ss_pred HHHHHHHHHHHHHHhcCC-c-cccCccccccchHHHHHHHHHHHHHHhccCCCCc-cccchHHHHHHHHHHHhhEEEEEE
Confidence 5566666555532 3222 1 1222478899999655554431 1 122233 778877777788888888899988
Q ss_pred eeccCccccc----------cCCCeEEEEcCCCCCCcccch-----HHhhh-cCcEEEeeecCCCCCC----CCCCCCCC
Q 012785 217 KWAGDAKRFN----------KDGPYIELVTSPNNPDGSVRQ-----SVVNR-SGGILVHDLAYYWPQY----TSITYPAD 276 (456)
Q Consensus 217 ~~~~d~~~l~----------~~~~~~i~v~~P~NPtG~~~~-----~l~~~-~~~~iI~De~y~~~~~----~~~~~~~~ 276 (456)
.+++|+...+ .+++.+++..-|+-|+|..=+ +++.+ +++.+-.|.+-.++-. .......-
T Consensus 196 ~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdF 275 (491)
T KOG1383|consen 196 EVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDF 275 (491)
T ss_pred eeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCcccccc
Confidence 8887754432 136788888899999999855 24444 9999999987765311 11101111
Q ss_pred CcEEEecCc----cccCCCCceEEEEEEeCHHHHH-HHH---H----HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 277 HDLMLFTVS----KSTGHAGTRIGWALVKDMEVAK-KMT---K----YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 277 ~~i~i~S~S----K~~g~~G~RiG~l~~~~~~~~~-~l~---~----~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
++-.+-|.| | +|+.---+||++-.++++.. ++. + .....+.+.|..+...+++...-+.-|+
T Consensus 276 r~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~----- 349 (491)
T KOG1383|consen 276 RVPGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGE----- 349 (491)
T ss_pred CCCCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhH-----
Confidence 222222222 3 34332337888876554322 110 0 0111233444444333333333222331
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecC
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg 423 (456)
+.+. +..+.+.+....+++.+++.+.+.+... |.-.|+..+-.. +.-.+.+.|++.|-.+..
T Consensus 350 --eGY~-~~~~~ive~~~~l~egie~i~~i~i~gk-------------p~vs~~~~~s~~~~i~elsd~l~~~GW~lna- 412 (491)
T KOG1383|consen 350 --EGYR-ENTQNIVETARKLREGIENIKGIKIVGK-------------PLVSFILFGSNDVNIFELSDLLRKKGWILNA- 412 (491)
T ss_pred --HHHH-HHHHHHHHHHHHHHHhhhccccceecCC-------------CcEEEEEccCCccchhhhhHHHHhcCcCccc-
Confidence 3344 4455566777788899988765554432 111133333222 455677889999887754
Q ss_pred CCCCCCCCeEEEEecC---ChhHHHHHHHHHHhh
Q 012785 424 KHFGFSPKYVRISMLD---RDENYNLFVQRLSKI 454 (456)
Q Consensus 424 ~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~ 454 (456)
-.|.. .+-+++.. .++--++++..|+++
T Consensus 413 lq~P~---a~Hi~vt~~~~~~~~A~~~v~Di~~~ 443 (491)
T KOG1383|consen 413 LQFPA---AIHICVTRVHAREDVADRFVADIRKV 443 (491)
T ss_pred cCCCC---ceEEEEEeeeccHHHHHHHHHHHHHH
Confidence 22322 33444332 333234455555544
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.3 Score=48.46 Aligned_cols=323 Identities=14% Similarity=0.127 Sum_probs=167.0
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccC---CCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEE
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD---VRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIV 167 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~ 167 (456)
-+..+|.||++...+.+. ..+... -.++.....-|.| .+| +.++...+.+|+.. .|.+.. .+-
T Consensus 64 vd~~m~PLGSCTMK~Np~--~e~~~~---~~p~f~~iHP~~pe~~vqG-----~l~li~~Lq~~L~~ITG~Dav---sLQ 130 (496)
T COG1003 64 VDRGMIPLGSCTMKLNPK--AEMKPA---TWPEFANIHPFQPEEQVQG-----YLELIYELQEWLKEITGMDAV---SLQ 130 (496)
T ss_pred cccCccCCcccccccCch--hhcccc---cccchhhcCCCCChHHHHH-----HHHHHHHHHHHHHHhcCCcee---ecc
Confidence 456789999998766543 111111 1111111112322 245 47777778888843 343221 122
Q ss_pred EccCHHHHHH--HHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc------cccc---CCCeEEEE
Q 012785 168 VGTGSTQLFQ--AALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK------RFNK---DGPYIELV 235 (456)
Q Consensus 168 ~t~G~~~al~--~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~------~l~~---~~~~~i~v 235 (456)
.-+|++.=+. ++++.. -..|+..+..+++++-.+.-....+.+.|.+++.++.|.+ .|+. +++.++++
T Consensus 131 P~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMi 210 (496)
T COG1003 131 PNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLAALMI 210 (496)
T ss_pred CCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhccceeEEEe
Confidence 3455543222 222222 3345444448999999998888899999999998886544 3433 36789999
Q ss_pred cCCCCCCcccch---H---HhhhcCcEEEeeecCCCCCCCCCC--CCCCCcEEEecCccccCCC----CceEEEEEEeCH
Q 012785 236 TSPNNPDGSVRQ---S---VVNRSGGILVHDLAYYWPQYTSIT--YPADHDLMLFTVSKSTGHA----GTRIGWALVKDM 303 (456)
Q Consensus 236 ~~P~NPtG~~~~---~---l~~~~~~~iI~De~y~~~~~~~~~--~~~~~~i~i~S~SK~~g~~----G~RiG~l~~~~~ 303 (456)
+|||- .|..=. + +..++|..+-.|-+-.. ...++. ..-+-+|+=.-+.|+|+.| |=-.|=+.++ .
T Consensus 211 TnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlN-A~vG~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk-~ 287 (496)
T COG1003 211 TNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLN-AIVGLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVK-A 287 (496)
T ss_pred ccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchh-hhhccccccccccceEEeecccccccCCCCCCCCCCceehH-h
Confidence 99862 344322 2 55679999988876542 111221 2223345545577777543 2224555444 4
Q ss_pred HHHHHHHH---------HH-----------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 304 EVAKKMTK---------YI-----------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 304 ~~~~~l~~---------~~-----------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
+++.-+-. +. ....+|.-.+.-. +-..+.. -| .+-+++.-+.---+.++
T Consensus 288 ~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~-a~~YI~~--mG--------~~GL~~ase~AvLNANY 356 (496)
T COG1003 288 HLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPI-AWAYIRM--MG--------ADGLKQASEVAVLNANY 356 (496)
T ss_pred hccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHH-HHHHHHH--Hh--------HHHHHHHHHHHHHhHHH
Confidence 43332211 00 0011222222222 2222221 12 34455555555556677
Q ss_pred HHHHHHhcCCccccCCCCcccccccccCCCCCce-EEeecC-------ccHHHHHHHHHhCCEEeecCCCCCC-CCCeEE
Q 012785 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKCE-------QEIEDCESFLKGNKILTRSGKHFGF-SPKYVR 434 (456)
Q Consensus 364 l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f-~~~~~~-------~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iR 434 (456)
+...|+.. +.+.-..-..|. + ..+... -...++.+.|.++|+.- |--.|.. -.+.+=
T Consensus 357 ia~rL~~~--y~~~y~~~~~~~-----------HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHa-PT~~FPliV~~tLM 422 (496)
T COG1003 357 IARRLKGY--YPVPYTGENRVA-----------HECILDARPLKKETGVRALDVAKRLLDYGFHA-PTMYFPLIVAGTLM 422 (496)
T ss_pred HHHHhhhc--CccccCCCCcce-----------eEEEeechHhHhhcCCcHHHHHHHHHhcCCCC-CcccCcccccccee
Confidence 78888753 222111100111 2 223332 15788999999999874 3333431 234444
Q ss_pred EEec--CChhHHHHHHHHHHhhh
Q 012785 435 ISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 435 is~~--~~~e~i~~~l~~L~~~l 455 (456)
|=-+ -++++++.++++|.++.
T Consensus 423 IEPTEsEsk~eLDrf~dami~I~ 445 (496)
T COG1003 423 IEPTESESKEELDRFIDAMIAIR 445 (496)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHH
Confidence 4332 26789999999988763
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.5 Score=46.51 Aligned_cols=217 Identities=11% Similarity=0.036 Sum_probs=124.9
Q ss_pred HHHHHHHHHHH-HHhcCccCCCceEEEccCHHHHHHHHHHHhcCCC----------------------------------
Q 012785 143 PEFAKEVVRLH-KVVGNAITENHHIVVGTGSTQLFQAALYALSSQD---------------------------------- 187 (456)
Q Consensus 143 ~~lr~aia~~~-~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~g---------------------------------- 187 (456)
..+++.+.+|+ +..|.+. ..-+ +|+|+|++...++.+.....
T Consensus 122 t~lE~~vi~~la~l~G~~~--~~G~-~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~ 198 (608)
T TIGR03811 122 SQMEEEVGKEFATLMGYKN--GWGH-IVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLL 198 (608)
T ss_pred HHHHHHHHHHHHHHhCCCC--CCeE-EeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccc
Confidence 78888888888 4566653 2334 78899998876665543210
Q ss_pred -------------------C-CCCcEEEEeCCCCCChhhhhhhcCC---eEeeeccC------cccccc-------C--C
Q 012785 188 -------------------A-SEPISVVSAAPYYSSYPSITDCVKS---RLYKWAGD------AKRFNK-------D--G 229 (456)
Q Consensus 188 -------------------d-~~~~~Vlv~~P~y~~~~~~~~~~g~---~~~~~~~d------~~~l~~-------~--~ 229 (456)
+ ....+|+++.-.+......+..+|+ .++.++.| .+.|+. . .
T Consensus 199 ~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p 278 (608)
T TIGR03811 199 ESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTP 278 (608)
T ss_pred cccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCC
Confidence 0 0011577777778889999999998 36666654 333432 1 1
Q ss_pred CeEEEEcCCCCCCcccch-----HHh---hhcCc--EEEeeecCCCCC---CCC-----CC-------------------
Q 012785 230 PYIELVTSPNNPDGSVRQ-----SVV---NRSGG--ILVHDLAYYWPQ---YTS-----IT------------------- 272 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~-----~l~---~~~~~--~iI~De~y~~~~---~~~-----~~------------------- 272 (456)
+-+|+-+-..=.+|.+=+ ++| +++|+ ++-+|-+|.+.. +.+ ++
T Consensus 279 ~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~ 358 (608)
T TIGR03811 279 ILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKE 358 (608)
T ss_pred eEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccc
Confidence 234555556667888744 356 56887 699999999621 110 00
Q ss_pred -----------CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--------------ccCcCChHHHHH
Q 012785 273 -----------YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--------------NTIGVSKDSQLR 327 (456)
Q Consensus 273 -----------~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--------------~~~~~s~~~q~~ 327 (456)
....-+=+...+.|.+. .-...|.++++|+++.+.+...... .+...+.+...+
T Consensus 359 ~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~A 437 (608)
T TIGR03811 359 YISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATA 437 (608)
T ss_pred cccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHH
Confidence 01112334567889765 5578999999988765544321110 011233333222
Q ss_pred HH--HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 012785 328 AA--KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS 371 (456)
Q Consensus 328 a~--~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 371 (456)
+. ..++.+--+ .+-+.++.++.-+..+.+.+.|...
T Consensus 438 lklW~~lr~l~~G--------~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 438 ASVWAAHKVLPLN--------VTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred HHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 222211012 3455667777777778888888774
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.57 Score=44.27 Aligned_cols=154 Identities=12% Similarity=0.124 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEE-eCCCCCChhhhhhh----------
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVS-AAPYYSSYPSITDC---------- 210 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv-~~P~y~~~~~~~~~---------- 210 (456)
...|.+..|+-++.....+ +.-+-+ +|+||..++..+++||| +.+. .---|.-...+.-.
T Consensus 67 RdtLe~vyA~vf~aE~a~V----Rpq~is-GTHAI~~aLfg~LRpgD----ell~i~G~PYDTLeevIG~rg~~~gSL~d 137 (416)
T COG4100 67 RDTLERVYAQVFGAEAALV----RPQIIS-GTHAIACALFGILRPGD----ELLYITGSPYDTLEEVIGLRGEGQGSLKD 137 (416)
T ss_pred hhHHHHHHHHHhcccccee----eeeeec-chhHHHHHHHhccCCCC----eEEEecCCcchhHHHHhccCCCCcccHHH
Confidence 4556666666664311111 222334 46999999999999999 6553 33333333333322
Q ss_pred cCCeEeeecc------Ccccccc---CCCeEEEEcCCCCCCcccch------H------Hhh--hcCcEEEeeecCCCCC
Q 012785 211 VKSRLYKWAG------DAKRFNK---DGPYIELVTSPNNPDGSVRQ------S------VVN--RSGGILVHDLAYYWPQ 267 (456)
Q Consensus 211 ~g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~NPtG~~~~------~------l~~--~~~~~iI~De~y~~~~ 267 (456)
+|+....+++ |.++++. +++|+|.+.. -+|..+. + +.+ ..++++++|..|.+.-
T Consensus 138 fgi~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQR---S~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFv 214 (416)
T COG4100 138 FGIKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQR---SKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFV 214 (416)
T ss_pred hCcceeecccccCCcccHHHHHHhcCccceEEEEEe---ccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhh
Confidence 2222223333 3333322 3678887632 2333322 2 233 3789999999999632
Q ss_pred CCCCCCCCCCcEEEecCccccCCCCc--eEEEEEEeCHHHHHHH
Q 012785 268 YTSITYPADHDLMLFTVSKSTGHAGT--RIGWALVKDMEVAKKM 309 (456)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~g~~G~--RiG~l~~~~~~~~~~l 309 (456)
-.--+..-+-+++.+|+-|.-| .|+ --||+.++ ++++++.
T Consensus 215 E~~EPt~vGaDliAGSLIKNpG-GgiaktGGYiaGk-~~~ve~~ 256 (416)
T COG4100 215 EEKEPTHVGADLIAGSLIKNPG-GGIAKTGGYIAGK-AELVEAA 256 (416)
T ss_pred hccCccccchhhhccceeeCCC-Cceeeccceeech-HHHHHhh
Confidence 2212223355789999999876 554 24899887 7777754
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.8 Score=47.40 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=114.3
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHh-cCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCC---Chh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVV-GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYS---SYP 205 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~-g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~---~~~ 205 (456)
-|.++.| +..+|..||.|++.+ +.+.+ +++|++.+.-..|++.+++.+...- .++=+.-+-+ .+.
T Consensus 421 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 489 (1082)
T PLN02672 421 PCEPPAG-----SKRFRNLIAGFMRIYHHIPLT-PDNVVVFPSRAVAIENALRLFSPRL-----AIVDEHLTRWLPKKWL 489 (1082)
T ss_pred CCCCCcc-----chHHHHHHHHHHHHhcCCcCC-ccceEEeccHHHHHHHHHHhhChHH-----HhhhhhhhccCCHHHH
Confidence 4777788 799999999999875 56665 6899999999999999998664321 0110111111 122
Q ss_pred hhhhhcC----------CeEeeec--cC--ccccccCCCeEEEEcCCCC--CCcccchH---HhhhcCcEEEeeecCC-C
Q 012785 206 SITDCVK----------SRLYKWA--GD--AKRFNKDGPYIELVTSPNN--PDGSVRQS---VVNRSGGILVHDLAYY-W 265 (456)
Q Consensus 206 ~~~~~~g----------~~~~~~~--~d--~~~l~~~~~~~i~v~~P~N--PtG~~~~~---l~~~~~~~iI~De~y~-~ 265 (456)
......| ++++.-| .| .+-+++-++++|+..--+. -|-..+.. .+++.|..++.|..-. +
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (1082)
T PLN02672 490 TSLAIENATSDSKSDDVITVIEAPRQSDLVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFLDISDHLE 569 (1082)
T ss_pred hHhhhhcccccCccCCeEEEEeCCCcchHHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEEehhhhee
Confidence 2222222 1122211 12 1222344777777644332 11111112 4677999999997543 2
Q ss_pred ----CCCCCC------CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHH
Q 012785 266 ----PQYTSI------TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLR 327 (456)
Q Consensus 266 ----~~~~~~------~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~ 327 (456)
++..++ ...+.+..++..+-|.--.+.+-+.+++.-++.+.+.+.+........++.++|.-
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1082)
T PLN02672 570 LSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKTGEVLEGRTAIISQFY 641 (1082)
T ss_pred eccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHHHHhhccchHHHHHHH
Confidence 211111 12356777788888888789999999988777888888888777777777777764
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.09 E-value=24 Score=33.44 Aligned_cols=260 Identities=13% Similarity=0.094 Sum_probs=134.6
Q ss_pred eEE-EccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec---------cCccccccC-CCe
Q 012785 165 HIV-VGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA---------GDAKRFNKD-GPY 231 (456)
Q Consensus 165 ~I~-~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~---------~d~~~l~~~-~~~ 231 (456)
.|+ +-.|++.-+.++..-|. +.|+. ..-|++-..+--.+.+.-+.-....+-++ .|.+.++.. +.+
T Consensus 72 ~vlf~QGGGt~qFaAv~lNL~glK~g~~-AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~~da~ 150 (370)
T KOG2790|consen 72 KVLFLQGGGTGQFAAVPLNLIGLKHGRC-ADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELNPDAS 150 (370)
T ss_pred eEEEEeCCCcccccccchhhhccccCCc-cceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhcccCCCcc
Confidence 454 44555555555555554 44421 00555554443334433333222233222 244555432 334
Q ss_pred EEEEcCCCCCC--cccchHHh--hhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 232 IELVTSPNNPD--GSVRQSVV--NRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 232 ~i~v~~P~NPt--G~~~~~l~--~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
.+++ +.|.| |+-++.+- .-++..+|.|-.-- +.+-+ +-....+++...-|.+|.+|+-+ +++. ++++
T Consensus 151 yvyy--CaNETVHGVEf~~~P~~~~~~~vlVaDmSSn---flSrpvDvsk~gvi~aGAQKN~G~aG~Tv--vivr-~dll 222 (370)
T KOG2790|consen 151 YVYY--CANETVHGVEFDFIPVNDPKGAVLVADMSSN---FLSRPVDVSKFGVIFAGAQKNVGPAGVTV--VIVR-KDLL 222 (370)
T ss_pred EEEE--ecCceeeceecCCCCCCCCCCceEEEecccc---hhcCCccchhcceEEeccccccCccccEE--EEEe-hhhh
Confidence 4444 45655 66666544 55788888886422 22222 33456788888999999888644 4444 5555
Q ss_pred HHHHHHH-----------hhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 307 KKMTKYI-----------ELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 307 ~~l~~~~-----------~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
......- ..+-+ .++.+..++.--.++++.+. .-++.+.+.-.++.+.+++.+.+..++
T Consensus 223 g~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~---------GGl~a~e~~n~~KskllYd~iD~s~gf 293 (370)
T KOG2790|consen 223 GNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEK---------GGLAAMEKLNQEKSKLLYDAIDNSNGF 293 (370)
T ss_pred cccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 4332210 00112 23333444444444444332 235667777788899999999987544
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQ 449 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~ 449 (456)
...+.+... .+.- -+-+++.. +.+++.+..+++ ..-.-|. ..-+.+|-|+-. +-++.+++++
T Consensus 294 y~cpVe~~~--------RS~M-NV~Fri~~d~Le~eFLkeA~~~~-mv~LKGh---RSVGGiRASlYNAisv~~~q~L~~ 360 (370)
T KOG2790|consen 294 YRCPVEPSV--------RSRM-NVPFRIEKDELEAEFLKEAAKEH-MVQLKGH---RSVGGIRASLYNAISVEEVQKLAA 360 (370)
T ss_pred EEcccchhh--------hhhc-ccceeecchHHHHHHHHHHHHhh-hhccccc---cccccchhhhhccccHHHHHHHHH
Confidence 333222221 1111 24445533 234444544444 4333333 235678999754 7888888888
Q ss_pred HHHhhh
Q 012785 450 RLSKIL 455 (456)
Q Consensus 450 ~L~~~l 455 (456)
-++++.
T Consensus 361 ~m~~F~ 366 (370)
T KOG2790|consen 361 FMKEFQ 366 (370)
T ss_pred HHHHHH
Confidence 887764
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.82 E-value=37 Score=34.15 Aligned_cols=284 Identities=12% Similarity=0.092 Sum_probs=143.0
Q ss_pred HHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CC-----C-CCCcEEE-EeCCCCCChhhhhhhcCC---eEe
Q 012785 149 VVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QD-----A-SEPISVV-SAAPYYSSYPSITDCVKS---RLY 216 (456)
Q Consensus 149 ia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~g-----d-~~~~~Vl-v~~P~y~~~~~~~~~~g~---~~~ 216 (456)
+++.....|.... .+.|+--.|+...++.+..+--+ |+ - .-|.-|+ +.+-++......+..+|+ .++
T Consensus 147 l~km~~ivGw~~~-~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~ 225 (510)
T KOG0629|consen 147 LAKMREIVGWEEG-GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCI 225 (510)
T ss_pred HHHHHHHhCCCCC-CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeE
Confidence 4555566777664 45664444444444444332211 11 0 0121333 445677778888888883 455
Q ss_pred eeccCc------cccccC----CCe--E-EEEcCCCCCC---cccch-----HHhhhcCcEEEeeecCCCCCCCC-----
Q 012785 217 KWAGDA------KRFNKD----GPY--I-ELVTSPNNPD---GSVRQ-----SVVNRSGGILVHDLAYYWPQYTS----- 270 (456)
Q Consensus 217 ~~~~d~------~~l~~~----~~~--~-i~v~~P~NPt---G~~~~-----~l~~~~~~~iI~De~y~~~~~~~----- 270 (456)
.++.|. +++++. +.+ . .++ |.+--| |..=+ ++|++|++|+-+|.+|.+.-.-+
T Consensus 226 ~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~v-naTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~ 304 (510)
T KOG0629|consen 226 KVKTDERGKMIPDDLEKKILEAKAKGGVPFFV-NATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH 304 (510)
T ss_pred EecccccCccchHHHHHHHHHHHhcCCCCeEE-EecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHh
Confidence 555443 334331 111 1 222 322212 33322 48999999999999998721111
Q ss_pred CCCCCCC-cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc------cCc-----CChHHHHH-----HHHHHH
Q 012785 271 ITYPADH-DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN------TIG-----VSKDSQLR-----AAKVLK 333 (456)
Q Consensus 271 ~~~~~~~-~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~------~~~-----~s~~~q~~-----a~~~L~ 333 (456)
....-++ .-+-.+..|.+| ..+..+..+...+.+.++..+....- .+. ...-.|-. -.-.|.
T Consensus 305 kl~Giera~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlm 383 (510)
T KOG0629|consen 305 KLTGIERANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLM 383 (510)
T ss_pred hccCccccCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHH
Confidence 1111111 234566779888 66788777766444444433221100 000 11111211 001111
Q ss_pred hhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCCCcccccccccCCCCCceEEeecC-------c-
Q 012785 334 VVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS-VPELPSQFCTFLGRAFEPQPAFAWLKCE-------Q- 404 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~- 404 (456)
.-..| ..-++...+..-+..+++.+.+++.+++. +..+..-+ .|+.+-..| .
T Consensus 384 wkaKG--------~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~-----------~nv~fw~vp~~lR~~~~~ 444 (510)
T KOG0629|consen 384 WKAKG--------TQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEH-----------VNVCFWYVPPSLRGWQEN 444 (510)
T ss_pred HHhcc--------cccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCce-----------EEEeeccCchHhccCccc
Confidence 11133 23455667777788899999998876432 22211111 112111112 1
Q ss_pred ---------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhh
Q 012785 405 ---------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKI 454 (456)
Q Consensus 405 ---------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~ 454 (456)
-...+...+.+.|-....-...+..++++|+.++. +.++++-+++.|..+
T Consensus 445 ~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 445 PERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred chhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 12334555666776665544455568899999875 577888888777654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.08 E-value=16 Score=36.88 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHH-hcCc-------cCCCceEEEccCHHHHHHHHHHHhc------CCCC---C-----CCcEEEEeCC
Q 012785 142 EPEFAKEVVRLHKV-VGNA-------ITENHHIVVGTGSTQLFQAALYALS------SQDA---S-----EPISVVSAAP 199 (456)
Q Consensus 142 ~~~lr~aia~~~~~-~g~~-------~~~~~~I~~t~G~~~al~~~~~~l~------~~gd---~-----~~~~Vlv~~P 199 (456)
-.||+.-+-+|++. .+.+ ..++..|+.++.+..-+-.++.+-. +.+. . ..-.+...+-
T Consensus 111 ~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDq 190 (511)
T KOG0628|consen 111 CTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQ 190 (511)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCc
Confidence 36888888888853 2222 1234567777665444433333221 1111 0 1124566788
Q ss_pred CCCChhhhhhhcCCeEeeeccCc------cccc----cC--C---CeEEEEcCC--CCCCccc-ch---HHhhhcCcEEE
Q 012785 200 YYSSYPSITDCVKSRLYKWAGDA------KRFN----KD--G---PYIELVTSP--NNPDGSV-RQ---SVVNRSGGILV 258 (456)
Q Consensus 200 ~y~~~~~~~~~~g~~~~~~~~d~------~~l~----~~--~---~~~i~v~~P--~NPtG~~-~~---~l~~~~~~~iI 258 (456)
........+...|+++..++.|. +.|+ .+ + +-.+ +.+- .|+.+.. +. .+|+++++|+-
T Consensus 191 ahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v-~at~GTT~~ca~D~l~elg~Vc~~~glWLH 269 (511)
T KOG0628|consen 191 AHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFV-CATLGTTSSCAFDELEELGPVCREEGLWLH 269 (511)
T ss_pred ccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEE-EEeecCccccccccHHHhcchhhhcCEEEE
Confidence 88888888888888887666553 2222 11 1 2222 2222 2232222 11 38999999999
Q ss_pred eeecCCC
Q 012785 259 HDLAYYW 265 (456)
Q Consensus 259 ~De~y~~ 265 (456)
+|.+|.+
T Consensus 270 VDAAYAG 276 (511)
T KOG0628|consen 270 VDAAYAG 276 (511)
T ss_pred eehhhcc
Confidence 9999996
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.39 E-value=40 Score=32.38 Aligned_cols=280 Identities=11% Similarity=0.104 Sum_probs=152.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC----hhhhhhhcCCeEe-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS----YPSITDCVKSRLY- 216 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~~~- 216 (456)
+......++...+. .+++|.+.+.-+--++.++..+.+|... +.+|+++.-.|+. ...+++..|..+.
T Consensus 113 De~il~l~~~iVGA------~e~EvavmNsLTvNlh~Ll~sFyKPTek-R~KILlE~kaFPSDhYAiesQ~~lhG~~~e~ 185 (465)
T KOG3846|consen 113 DEPILPLLAPIVGA------QENEVAVMNSLTVNLHSLLISFYKPTEK-RFKILLEKKAFPSDHYAIESQCKLHGISPEN 185 (465)
T ss_pred chhhhhhhhhhccC------CchhhhhHhhhhhHHHHHHHHhcCCcch-hhhhhhccCCCCchHHHHHhhhhhcCCChHH
Confidence 34455555665553 4568999999999999999999887542 2289999887775 4455666676542
Q ss_pred ---eeccC--c---------cccccC--CCeEEEEcCCCCCCcccch--HHh---hhcCcEEEeeecCCCCCCCCCC-CC
Q 012785 217 ---KWAGD--A---------KRFNKD--GPYIELVTSPNNPDGSVRQ--SVV---NRSGGILVHDLAYYWPQYTSIT-YP 274 (456)
Q Consensus 217 ---~~~~d--~---------~~l~~~--~~~~i~v~~P~NPtG~~~~--~l~---~~~~~~iI~De~y~~~~~~~~~-~~ 274 (456)
.++.- + +-++.. ...+|+.+-.|.=||+... ++- +..|+++=.|-++.-. -.++- ..
T Consensus 186 sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvg-NVpL~LHd 264 (465)
T KOG3846|consen 186 SMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVG-NVPLQLHD 264 (465)
T ss_pred heEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhc-CCceEEee
Confidence 11110 1 112222 3456677778889999866 332 3477887778776521 12221 23
Q ss_pred CCCcEEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHHHhh---------------------ccCcCChHHHHHHHHHH
Q 012785 275 ADHDLMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKYIEL---------------------NTIGVSKDSQLRAAKVL 332 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~~~~---------------------~~~~~s~~~q~~a~~~L 332 (456)
.+-++-++.--|.+. +|- -||-+.+..+...+...+.... ..+..|.+....+.++.
T Consensus 265 WgVDFACWCSYKYln-aGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~ 343 (465)
T KOG3846|consen 265 WGVDFACWCSYKYLN-AGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALR 343 (465)
T ss_pred cCCceEEEeeecccc-cCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHH
Confidence 455666666666553 221 3555555422222211111110 11222222222233333
Q ss_pred HhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CC-----------ccccCCCCcccccccccCCCCCce
Q 012785 333 KVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GL-----------FSVPELPSQFCTFLGRAFEPQPAF 397 (456)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~-----------~~~~~~~g~~~~~~~~~~~~~~~f 397 (456)
.++ +-+-+...+.+++|.-++...|+.+ .+ +++..|. .....|.-
T Consensus 344 ~SL-----------e~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~---------~~~erGcQ 403 (465)
T KOG3846|consen 344 SSL-----------ELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPT---------STDERGCQ 403 (465)
T ss_pred hhH-----------HHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCc---------ccccccce
Confidence 211 1222334555555555554444321 11 1122221 11223334
Q ss_pred EEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec---CChhHHHHHHHHHHhhh
Q 012785 398 AWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML---DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~---~~~e~i~~~l~~L~~~l 455 (456)
+-+.+..+.+.+++.|.++|+.+-. ..++.||+.-. .+-.++..++..|.+++
T Consensus 404 Lsl~Fssp~~~vfqeL~krGv~~Dk-----R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~ 459 (465)
T KOG3846|consen 404 LSLYFSSPTPKVFQELHKRGVIGDK-----RRPNVIRVAPVPLYNTFSDVYIFVNALNEAM 459 (465)
T ss_pred EEEEeCCCchHHHHHHHHcCeeccc-----cCCCceEeecchhhccHHHHHHHHHHHHHHH
Confidence 5555555678899999999998754 34889999843 36678888888888765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 456 | ||||
| 3bwn_A | 391 | L-Tryptophan Aminotransferase Length = 391 | 1e-113 | ||
| 3bwn_C | 391 | L-Tryptophan Aminotransferase Length = 391 | 1e-112 | ||
| 1lk9_A | 448 | The Three-Dimensional Structure Of Alliinase From G | 6e-60 | ||
| 2hor_A | 427 | Crystal Structure Of Alliinase From Garlic- Apo For | 8e-60 |
| >pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase Length = 391 | Back alignment and structure |
|
| >pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase Length = 391 | Back alignment and structure |
|
| >pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic Length = 448 | Back alignment and structure |
|
| >pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form Length = 427 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 456 | |||
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 1e-145 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 1e-133 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 1e-14 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 5e-14 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 1e-13 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 7e-13 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 5e-12 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 9e-12 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 4e-11 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 4e-10 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 6e-10 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 4e-09 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 1e-08 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 6e-08 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 3e-07 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 7e-07 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 1e-06 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 2e-06 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 3e-06 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 3e-06 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 1e-05 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 1e-05 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 3e-05 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 6e-05 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 1e-04 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 1e-04 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 3e-04 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 4e-04 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 8e-04 |
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-145
Identities = 200/387 (51%), Positives = 276/387 (71%), Gaps = 13/387 (3%)
Query: 71 SSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSY 130
S P + ++ +D ++N+DHGDPT YE+YW+K+GD+ T+ I G +SY
Sbjct: 7 SRKPEKISNKNIPMSD--------FVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSY 58
Query: 131 FSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASE 190
FSD+ NLCWFLEPE + LH VVGNA TE+ +IVVGTGSTQL QAA++ALSS S+
Sbjct: 59 FSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQ 118
Query: 191 PISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVV 250
P+SVV+AAP+YS+Y T V+S +YKW GDA F+K GPYIELVTSPNNPDG++R++VV
Sbjct: 119 PVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGFDKKGPYIELVTSPNNPDGTIRETVV 178
Query: 251 NR---SGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307
NR ++HD AYYWP YT IT DHD+MLFT SK TGHAG+RIGWALVKD EVAK
Sbjct: 179 NRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAK 238
Query: 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367
KM +YI +N+IGVSK+SQ+R AK+L V+ ++CK + FF++ M RW++LR
Sbjct: 239 KMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESEN-FFKYGREMMKNRWEKLREV 297
Query: 368 VQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG 427
V++S F++P+ P FC + G++ E PAFAWL ++E D S L+ +K+++R+G+ G
Sbjct: 298 VKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-TDLVSELRRHKVMSRAGERCG 356
Query: 428 FSPKYVRISMLDRDENYNLFVQRLSKI 454
K+VR+SML R++ +N+F++RL+ +
Sbjct: 357 SDKKHVRVSMLSREDVFNVFLERLANM 383
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 391 bits (1005), Expect = e-133
Identities = 133/398 (33%), Positives = 212/398 (53%), Gaps = 14/398 (3%)
Query: 68 LSLSSSPSPSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQS 127
+ SP ++ T D S+ +V GD E+YW++ + + +++ W
Sbjct: 31 IISEGSPKCECNTCYTGPDC-SEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHR 89
Query: 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQD 187
+SYF + + F+ E K + LH+VVGNA ++ +IV G G TQL + +LS
Sbjct: 90 MSYFFN--PVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNM 147
Query: 188 ASEPIS----VVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNK---DGPYIELVTSPNN 240
+ P + VV+ AP+Y + T + Y WAG+A + YIE+VTSPNN
Sbjct: 148 TATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNN 207
Query: 241 PDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300
P+G +R +V+ ++D+ YYWP YT I Y AD D++LFT+SK TGH+G+R GWAL+
Sbjct: 208 PEGLLRHAVIKGC--KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALI 265
Query: 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360
KD V + Y+ NT G +++QLR+ KVLK V K F ++ R
Sbjct: 266 KDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRER 325
Query: 361 WKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQE-IEDCESFLKGNKI 418
W + + +S FS ELP S++C + R P P++AW+KCE E +DC + +I
Sbjct: 326 WVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRI 385
Query: 419 LTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456
T++G F S +YVR+S++ ++++ + L ++
Sbjct: 386 NTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVK 423
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 49/320 (15%), Positives = 104/320 (32%), Gaps = 68/320 (21%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-----DCVKSRLYK-W 218
IV+G G++++ + ++ ++ P Y+ Y V S L +
Sbjct: 80 GIVLGNGASEIIELSISLFEK--------ILIIVPSYAEYEINAKKHGVSVVFSYLDENM 131
Query: 219 AGDAKRFNKDGPYIELV--TSPNNPDGSV--RQSV------VNRSGGILVHDLAYY---- 264
D + ++ V +PNNP+G + ++ ++ D A+
Sbjct: 132 CIDYEDIISKIDDVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTG 191
Query: 265 WPQYTSITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---LNTIG 319
P + + ++ ++ ++K G R G+ + + E+A K+ +N
Sbjct: 192 DPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCF- 250
Query: 320 VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL 379
+++ A LK D + E + + K+ + K G
Sbjct: 251 ----AEMAAINCLK------------DTNYIEESLLWIKKERKRFIEELNKIGFIK-RVF 293
Query: 380 PSQ--FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHF-GFSPKYVRIS 436
F E L I+ R +F G +VR +
Sbjct: 294 SPHANFVLC---RLENISGEKLYD----------SLLKEDIVIRRCCNFIGLDDSFVRFA 340
Query: 437 MLDRDENYNLFVQRLSKILS 456
+ D +N F++ L + +
Sbjct: 341 IKDEKKN-TKFLRALKGVEN 359
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 55/311 (17%), Positives = 101/311 (32%), Gaps = 60/311 (19%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR 224
I+V G T F A + A P ++ Y + + + +
Sbjct: 69 AILVTNGPTAAFYQIAQAF------RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI 122
Query: 225 FNKDGPYIELV--TSPNNPDGS------VRQSVVNRSGGILVHDLAY--YWPQ-YTSITY 273
D ++ +PNNPDG + + + + V D +Y + +
Sbjct: 123 GEADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPAD 182
Query: 274 PADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---LNTIGVSKDSQLRA 328
+M+++ S + G G RIG+ + + + K++ + +N + + A
Sbjct: 183 IKGRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTPWAVNAL-----AIEAA 236
Query: 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL---PSQFCT 385
+L F + R Q + L + + PS T
Sbjct: 237 KFIL------------IHPAQF-----TLPIRKWQRNTVDFITALNRLDGVEVHPSG-TT 278
Query: 386 FLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHF-GFSPKYVRISMLDRDENY 444
F LK E + L+ +L R +F G YVRI+ +N
Sbjct: 279 FF---------LLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQRPAQN- 328
Query: 445 NLFVQRLSKIL 455
LF++ L L
Sbjct: 329 QLFIKALETFL 339
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 54/320 (16%), Positives = 110/320 (34%), Gaps = 67/320 (20%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR 224
I+ G G T+ L + + P ++ Y + +W+
Sbjct: 78 WILAGNGETESIFTVASGLKPRR------AMIVTPGFAEYGRALAQSGCEIRRWSLREAD 131
Query: 225 FNKD--------GPYIELV--TSPNNPDGSV--RQSV------VNRSGGILVHDLAYY-- 264
+ P ++ + +PNNP G + R + L+ D A+
Sbjct: 132 GWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDF 191
Query: 265 -WPQYTSITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---LNTI 318
+ I D+ +L +++K G R+G+ + D +M + +N +
Sbjct: 192 IPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNAL 251
Query: 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378
+ L L +D + + T H + + A+ + L +V
Sbjct: 252 -----AALAGEVAL------------QDSAWQQATWHWLREEGARFYQALCQLPLLTV-- 292
Query: 379 LPSQFCTFLGRAFEPQPA-FAWLKCEQEIEDCESFLKGNKILTRSGKHF-GFSPKYVRIS 436
P + A + L+CE+E D + L +IL RS ++ G +Y R++
Sbjct: 293 YPGR-------------ANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVA 339
Query: 437 MLDRDENYNLFVQRLSKILS 456
+ +N + L +L+
Sbjct: 340 IRSAAQN-ERLLAALRNVLT 358
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 7e-13
Identities = 58/314 (18%), Positives = 108/314 (34%), Gaps = 68/314 (21%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYK------W 218
I++ GS ++ + A +++ + P YS Y ++ + +R+ +
Sbjct: 84 WIIMANGSDEVLNNLIRAFAAEGEE----IGYVHPSYSYYGTLAEVQGARVRTFGLTGDF 139
Query: 219 AGDAKRFNKDGPYIELVTSPNNPDGSVR-----QSVVNRSGGILVHDLAYYWPQY---TS 270
+G +T+PN P G + R G+LV D Y ++ +
Sbjct: 140 RIAGFPERYEGKVF-FLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYA--EFAESNA 196
Query: 271 ITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK----YIELNTIGVSKDS 324
+ H+ ++ T+SKS AG RIG A + EV + K Y N + + +
Sbjct: 197 LELVRRHENVVVTRTLSKSYSLAGMRIGLA-IARPEVIAALDKIRDHY---N---LDRLA 249
Query: 325 QLRAAKVLKVVSDSCKPSGSEDECFFEFT-NHQMSTRWKQLRMAVQKSGLFSVPELPSQ- 382
Q L D+ + TR + ++ G + V +PSQ
Sbjct: 250 QAACVAAL------------RDQAYLSECCRRIRETR-EWFTTELRSIG-YDV--IPSQG 293
Query: 383 -FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRD 441
+ + + + L K+L R +RIS+ R+
Sbjct: 294 NYLFATPPDRDGKRVYD-------------GLYARKVLVRHFSDPLL-AHGMRISIGTRE 339
Query: 442 ENYNLFVQRLSKIL 455
E + L +I
Sbjct: 340 EM-EQTLAALKEIG 352
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 58/320 (18%), Positives = 105/320 (32%), Gaps = 71/320 (22%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-----DCVKSRLYK-W 218
++ G +L + L + V A P + Y + + L +
Sbjct: 86 ELIFTAGVDELIELLTRVLLDTTT----NTVMATPTFVQYRQNALIEGAEVREIPLLQDG 141
Query: 219 AGDAKRFNK---DGPYIELVTSPNNPDGSV---------RQSVVNRSGGILVHDLAYY-- 264
D + + I + +PNNP G+ V S ++V D AY
Sbjct: 142 EHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRV--PSDVLVVLDEAYIEY 199
Query: 265 --WPQYTSITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI-- 318
+ ++ T SK G A R+G+ + D E+ + +LN +
Sbjct: 200 VTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYG-IADKEIIR------QLNIVRP 252
Query: 319 --GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376
+ Q A + + +D+ F + KQ ++ +
Sbjct: 253 PFNTTSIGQKLAIEAI------------KDQAFIGECRTSNANGIKQYEAFAKRFEKVKL 300
Query: 377 PELPSQFCTFLGRAFEPQPA-FAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRI 435
P+ F + E S+L+ N +TRSG GF P VRI
Sbjct: 301 Y--PAN-------------GNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGF-PTAVRI 344
Query: 436 SMLDRDENYNLFVQRLSKIL 455
++ ++N + + L K+L
Sbjct: 345 TIGKEEDN-SAVIALLEKLL 363
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 61/321 (19%), Positives = 110/321 (34%), Gaps = 71/321 (22%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-----DCVKSRLYK-W 218
I++ GS++ +AA+ A +S +A +V Y K ++ W
Sbjct: 70 SILLTAGSSEGIRAAIEAYASLEAQ----LVIPELTYGDGEHFAKIAGMKVTKVKMLDNW 125
Query: 219 AGDAKRF-----NKDGPYIELVTSPNNPDGS-VRQSVVNR------SGGILVHDLAYY-- 264
A D + GP I + +PNNP G+ V+ + + + D AY
Sbjct: 126 AFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEF 185
Query: 265 --WPQYTSITY--PADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---L 315
P++ SI+ + ++L T SK AG R+G+A V V M +Y+ +
Sbjct: 186 VNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYA-VAHPTVIALMGRYVAGEKI 244
Query: 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS 375
N G A + D F ++ + L A++ L
Sbjct: 245 NFSG-----VDAALASM------------NDSAFITYSKKSNDVSRQILLKALEDLKL-- 285
Query: 376 VPELPSQFCTFLGRAFEPQPA-FAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVR 434
P LPS+ F + + ++D ++ + +L + R
Sbjct: 286 -PYLPSE-------------GNFVFHQLVVPLKDYQTHMADAGVLIGRAFPPA--DNWCR 329
Query: 435 ISMLDRDENYNLFVQRLSKIL 455
IS+ E + +
Sbjct: 330 ISLGTPQEM-QWVADTMREFR 349
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 60/318 (18%), Positives = 111/318 (34%), Gaps = 73/318 (22%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC--VKSRLYKWAGD- 221
++ GS ++ Q L A + + P YS +P + + D
Sbjct: 94 NLWAANGSNEILQQLLQAFGGPGRT----ALGFQPSYSMHPILAKGTHTEFIAVSRGADF 149
Query: 222 -------AKRFNKDGPYIELVTSPNNPDGSVR-----QSVVNRSGGILVHDLAY--YWPQ 267
+ P I VT+PNNP G V + ++N + GI++ D AY + P
Sbjct: 150 RIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPS 209
Query: 268 YTSITYPADHD---LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI----GV 320
++ T + ++ T+SK+ AG R+G+ V + + + +
Sbjct: 210 PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYF-VANPAFID------AVMLVRLPYHL 262
Query: 321 SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ-MSTRWKQLRMAVQKSGLFSVPEL 379
S SQ A L T + R ++ +++ G ++V
Sbjct: 263 SALSQAAAIVAL------------RHSADTLGTVEKLSVER-VRVAARLEELG-YAVV-- 306
Query: 380 PSQ--FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISM 437
PS+ F F F Q A +L R G ++R ++
Sbjct: 307 PSESNFVFF--GDFSDQHAAW------------QAFLDRGVLIR---DVGI-AGHLRTTI 348
Query: 438 LDRDENYNLFVQRLSKIL 455
+EN + F+ ++I+
Sbjct: 349 GVPEEN-DAFLDAAAEII 365
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 59/321 (18%), Positives = 103/321 (32%), Gaps = 64/321 (19%)
Query: 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYY 201
P F K V +L+ V E I+ G+T LY+L D V+S P Y
Sbjct: 66 PAFKKSVSQLYTGVK---PEQ--ILQTNGATGANLLVLYSLIEPGD--H---VISLYPTY 115
Query: 202 SSYPSITDCVKSRLYKWAGDAKR-FNKDGPYIE----------LVTSPNNPDGSV----- 245
I + + + W + + + D + + + NNP G+V
Sbjct: 116 QQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTY 175
Query: 246 RQSVVN--RSGGILVH-DLAYYWPQYTSITYPAD-HDLMLFT--VSKSTGHAGTRIGWAL 299
+ +V G + D Y + + +D + +SK+ G RIGW
Sbjct: 176 LEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWV- 234
Query: 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359
+ +V + Y + I L A L ++ E H +
Sbjct: 235 AANHQVTDILRDYRDYTMICAGVFDDLVAQLALA---------HYQE--ILERNRHILEE 283
Query: 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKCEQEIED---CESFLKG 415
L +++ L S P +++K ++ C L+
Sbjct: 284 NLAILDQWIEEEPLVSY--------------IRPAVVSTSFVKIAVDMPMEDFCLQLLQE 329
Query: 416 NKILTRSGKHFGFSPKYVRIS 436
+ +L G F YVR+
Sbjct: 330 HGVLLVPGNRFE-RDGYVRLG 349
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 52/312 (16%), Positives = 102/312 (32%), Gaps = 68/312 (21%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR 224
++++ G + F SS V+A P + Y + R + G
Sbjct: 70 NLMLVRGIDECFDRISAEFSSMR------FVTAWPGFDGYRARIAVSGLR-HFEIGLTDD 122
Query: 225 FNKDGPYIE--------LVTSPNNPDGS-VRQSVVNR---SGGILVHDLAYYWPQYT--S 270
D + ++ +P+NP G + +++ G L+ D Y Y+
Sbjct: 123 LLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYV--DYSSFR 180
Query: 271 ITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI----GVSKDS 324
A + L+ + SKS G AG R+G E+ + V
Sbjct: 181 ARGLAYGENELVFRSFSKSYGLAGLRLGALFG-PSELIA------AMKRKQWFCNVGTLD 233
Query: 325 QLRAAKVLKVVSDSCKPSGSEDECFFEFT-NHQMSTRWKQLRMAVQKSGLFSVPELPSQF 383
L +++ E ++ R +++ A++ G + V S+
Sbjct: 234 LHALEAAL------------DNDRAREAHIAKTLAQR-RRVADALRGLG-YRVA--SSE- 276
Query: 384 CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDEN 443
F+ E E FL+ I + FG ++RIS+ ++N
Sbjct: 277 ANFV--LVENAAG----------ERTLRFLRERGIQVKDAGQFGL-HHHIRISIGREEDN 323
Query: 444 YNLFVQRLSKIL 455
+ + L++
Sbjct: 324 -DRLLAALAEYS 334
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 61/327 (18%), Positives = 114/327 (34%), Gaps = 82/327 (25%)
Query: 165 HIVVGTGSTQLFQAALYA-LSSQDASEPISVVSAAPYYSSYPSIT-----DCVKSRLYKW 218
+I++G GS Q+ + A+++ L+S++ + + A ++ Y C K++
Sbjct: 84 NIIIGAGSDQVIEFAIHSKLNSKN-----AFLQAGVTFAMYEIYAKQCGAKCYKTQSITH 138
Query: 219 AGD-----AKRFNKDGPYIELVTSPNNPDGSV---------RQSVVNRSGGILVHDLAYY 264
D + D + + PNNP G + V ++V D AY
Sbjct: 139 NLDEFKKLYETHK-DEIKLIFLCLPNNPLGECLDASEATEFIKGV--NEDCLVVIDAAYN 195
Query: 265 -------WPQYTS-ITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314
++ + D L L T SK G G RIG+ + + +
Sbjct: 196 EFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIIS------A 248
Query: 315 LNTI----GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK 370
+ VS + A + +D+ F E T ++ + + +K
Sbjct: 249 FYKLRAPFNVSNLALKAAVAAM------------DDDEFTEKTLENNFSQMELYKEFAKK 296
Query: 371 SGLFSVPELPSQ--FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF 428
+ + S F T+ F+ + + D L I+ R+ K +G
Sbjct: 297 HNIKII---DSYTNFITYF---FDEKNS----------TDLSEKLLKKGIIIRNLKSYGL 340
Query: 429 SPKYVRISMLDRDENYNLFVQRLSKIL 455
+ +RI++ EN F KIL
Sbjct: 341 N--AIRITIGTSYEN-EKFFTEFDKIL 364
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 62/378 (16%), Positives = 120/378 (31%), Gaps = 106/378 (28%)
Query: 122 IPGWQSLSYFSDVRNLCWFLEPEFAKEVVR-LHKVVGNAIT-ENHHIVVGTGSTQLFQAA 179
I +++++ F D L PEF K + + + K G + + +V+ G+T +
Sbjct: 70 IKSFKAIANFQDYHGL-----PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETI 124
Query: 180 LYALSSQ-DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------------- 223
++ L+ DA + +PYY ++ R +W +
Sbjct: 125 IFCLADPGDA-----FLVPSPYYPAFN--------RDLRWRTGVQLIPIHCESSNNFKIT 171
Query: 224 ---------RFNKDGPYIE--LVTSPNNPDGSV--RQ------SVVNRSGGILVHD---- 260
K ++ ++T+P+NP G+ + S N+ LV D
Sbjct: 172 SKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYA 231
Query: 261 -LAYYWPQYTSIT--------YPADHDL--MLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309
+ PQ+ SI + DL +++++SK G G R+G + +V
Sbjct: 232 ATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCA 291
Query: 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQ 369
K + L A +L DE F + + + R +
Sbjct: 292 RKMSSFGLVSTQTQYFL--AAML------------SDEKFVDNFLRESAMRLGKRHKHFT 337
Query: 370 KSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKC---------EQEIEDCESFLKGNKIL 419
V + C + W+ + E+ + K+
Sbjct: 338 N--GLEVVGIK---C------LKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLN 386
Query: 420 TRSGKHFGFS-PKYVRIS 436
G F P + R+
Sbjct: 387 VSPGSSFECQEPGWFRVC 404
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 67/376 (17%), Positives = 118/376 (31%), Gaps = 108/376 (28%)
Query: 126 QSLSYFSDVRNLCWFLEPEFAKEVVR-LHKVVGNAIT-ENHHIVVGTGSTQLFQAALYAL 183
L+ F D L P F K +V + ++ GN +T + +H+V+ G+T + ++ L
Sbjct: 77 AELALFQDYHGL-----PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL 131
Query: 184 SSQ-DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK------------------- 223
+ +A V+ PYY + R KW +
Sbjct: 132 ADPGEA-----VLIPTPYYPGFD--------RDLKWRTGVEIVPIHCTSSNGFQITETAL 178
Query: 224 -----RFNKDGPYIE--LVTSPNNPDGSV--RQ------SVVNRSGGILVHD-----LAY 263
K ++ LVT+P+NP G+ R S V G L+ D A+
Sbjct: 179 EEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF 238
Query: 264 YWPQYTSI----------TYPADHDL--MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK 311
P + S+ +++++SK G G R+G D V TK
Sbjct: 239 SSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK 298
Query: 312 YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS 371
VS +Q + +L D+ + + R KQ + +
Sbjct: 299 MSSFGL--VSSQTQHLLSAML------------SDKKLTKNYIAENHKRLKQRQKKLVSG 344
Query: 372 GLFSVPELPSQFCTFLGRAFEPQPAF-AWLKC---------EQEIEDCESFLKGNKILTR 421
+ C W+ E E+E + + +
Sbjct: 345 --LQKSGIS---C------LNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS 393
Query: 422 SGKHFGFS-PKYVRIS 436
G + P + R+
Sbjct: 394 PGSSCHCTEPGWFRVC 409
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 50/299 (16%), Positives = 101/299 (33%), Gaps = 72/299 (24%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYK------W 218
++ VG G+ ++ + V P YS Y V ++ +
Sbjct: 78 NVSVGNGADEIIYVMMLMFDR--------SVFFPPTYSCYRIFAKAVGAKFLEVPLTKDL 129
Query: 219 AGDAKRFNKDGPYIELVTSPNNPDG-SVRQSVVNR---SGGILVHDLAYY-WPQYTSITY 273
+ + + +PNNP G + + R +G + D AYY + + + +
Sbjct: 130 RIPEVNVGE--GDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDF 187
Query: 274 PADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK----YIELNTIGVSKDSQLR 327
++ ++ T SK+ A R+G+ V + + + VS SQ+
Sbjct: 188 LKKYENLAVIRTFSKAFSLAAQRVGYV-VASEKFIDAYNRVRLPF------NVSYVSQMF 240
Query: 328 AAKVLKVVSDSCKPSGSEDECFFEFTNHQ-MSTRWKQLRMAVQKSGLFSVPELPSQ--FC 384
A L + FE + R ++++ A+++ G + + S+ F
Sbjct: 241 AKVAL------------DHREIFEERTKFIVEER-ERMKSALREMG-YRI--TDSRGNFV 284
Query: 385 TFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDEN 443
E + L+ + R F + VRI++ R+EN
Sbjct: 285 FVFMEKEEKERLLE-------------HLRTKNVAVR---SF---REGVRITIGKREEN 324
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 51/251 (20%), Positives = 81/251 (32%), Gaps = 61/251 (24%)
Query: 237 SPNNPDGSVR-----QSVV---NRSGGILVHDLAY-------YWPQYTSI-TYP--ADHD 278
SPNNP G+V +++V +++ D AY P SI P
Sbjct: 171 SPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLP--KSIFEIPDARFCA 228
Query: 279 LMLFTVSKSTGHAGTRIGWALV-KDMEVAKKMTKYIELNTI------GVSKDSQLRAAKV 331
+ + + SK G AG R+GW ++ +++ A + G S +Q
Sbjct: 229 IEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAG 288
Query: 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAF 391
L + H LR A+ +G F
Sbjct: 289 LS----------ILPQL---EAIHYYRENSDLLRKALLATGF---------------EVF 320
Query: 392 EPQPA-FAWLKCEQEIEDCESF----LKGNKILTRSGKHFGFSPK-YVRISMLDRDENYN 445
+ A + W+K Q L+ I G FG S +VR S L + E+
Sbjct: 321 GGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDIL 380
Query: 446 LFVQRLSKILS 456
+RL +
Sbjct: 381 AACERLQMAPA 391
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 48/256 (18%), Positives = 76/256 (29%), Gaps = 70/256 (27%)
Query: 237 SPNNPDGSVR-----QSVV---NRSGGILVHDLAYYWPQYTSITYPADHDLM-------- 280
SPNNP G+ +V ++G ILV+D AY + D
Sbjct: 217 SPNNPTGAAATRAQLTELVNFARKNGSILVYDAAY-----ALYIS--NPDCPKTIYEIPG 269
Query: 281 -------LFTVSKSTGHAGTRIGWALV-KDMEVAKKMTKYIELNTI------GVSKDSQL 326
+ SK G G R+GW +V K ++ A + + N + G S Q
Sbjct: 270 ADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQA 329
Query: 327 RAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386
L + + L+ + G
Sbjct: 330 GGLACL---------QPEGLKEMNAMIKFYKENA-QILKTTFTEMGF------------- 366
Query: 387 LGRAFEPQPA-FAWLKC-EQEIED-CESFLKGNKILTRSGKHFGFSPK---YVRISMLDR 440
+ A + W+ + D L+ I+T G G+ P +VR S
Sbjct: 367 --SVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPG--SGYGPAGEGFVRASAFGS 422
Query: 441 DENYNLFVQRLSKILS 456
EN V+R +
Sbjct: 423 RENILEAVRRFKEAYG 438
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 57/328 (17%), Positives = 109/328 (33%), Gaps = 76/328 (23%)
Query: 160 ITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYK-- 217
+ +++G GS ++ A + A V++ P + Y
Sbjct: 82 VPAGMEVLLGNGSDEIISMLALAAARPGAK----VMAPVPGFVMYAMSAQFAGLEFVGVP 137
Query: 218 ----WAGD----AKRFNKDGPYIELVTSPNNPDGS----------VRQSVVNRSGGILVH 259
+ D + P I + PNNP G+ VR + + ++V
Sbjct: 138 LRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197
Query: 260 DLAYYWPQY---TSITYPADHD--LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314
D AY + + ++ D L++ TVSK G AG R+G+ D + +++ K
Sbjct: 198 DEAYQ--PFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAG-DPQWLEQLDKVRP 253
Query: 315 ---LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ-MSTRWKQLRMAVQK 370
+N + ++ A L E + Q + R ++ +
Sbjct: 254 PYNVNVL-----TEATALFAL------------EHVAVLDEQAAQLRAER-SRVAEGMAA 295
Query: 371 SGLFSVPELPSQ--FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF 428
G +V PS F L R + F L K+L ++
Sbjct: 296 HGGVTV--FPSAANF--LLARVPDAAQTFD-------------RLLARKVLIKNVSKMHP 338
Query: 429 S-PKYVRISMLDRDENYNLFVQRLSKIL 455
+R+++ +EN F++ + L
Sbjct: 339 LLANCLRVTVSTPEEN-AQFLEAFAASL 365
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 22/154 (14%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD-----CVKSRLYK-W 218
++V G+ + + + A ++ P Y Y + C W
Sbjct: 77 QVLVSRGADEGIELLIRAFCEPGKDA---ILYCPPTYGMYSVSAETIGVECRTVPTLDNW 133
Query: 219 AGDAKRFNK--DGPYIELVTSPNNPDGSV--RQSVVN-----RSGGILVHDLAY--YWPQ 267
D + + DG + V SPNNP G + Q R I+V D AY + PQ
Sbjct: 134 QLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQ 193
Query: 268 YTSITYPADHD--LMLFTVSKSTGHAGTRIGWAL 299
+ + A++ +L T+SK+ AG R G+ L
Sbjct: 194 ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTL 227
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 48/252 (19%), Positives = 76/252 (30%), Gaps = 65/252 (25%)
Query: 237 SPNNPDGSV------RQSV--VNRSGGILVHDLAY----YWPQYTSITYPADHDLM---- 280
SPNNP G+ Q V ++G I+V+D AY SI
Sbjct: 206 SPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSI-------FEIPGA 258
Query: 281 ------LFTVSKSTGHAGTRIGWALV-KDMEVAKKMTKYIELNTI------GVSKDSQLR 327
+ S G G R+GW ++ K + + + N I G S SQ
Sbjct: 259 EEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAG 318
Query: 328 AAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387
A L + E + + G
Sbjct: 319 ALACL---------TPEGLEAMHKVIGFYKENT-NIIIDTFTSLGY-------------- 354
Query: 388 GRAFEPQPA-FAWLKC-EQEIED-CESFLKGNKILTRSGKHFGFSPK-YVRISMLDRDEN 443
+ + A + W+ Q D L+ ++T G FG + +VR+S EN
Sbjct: 355 -DVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHREN 413
Query: 444 YNLFVQRLSKIL 455
+R ++
Sbjct: 414 ILEACRRFKQLY 425
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 55/301 (18%), Positives = 87/301 (28%), Gaps = 64/301 (21%)
Query: 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI---TDCVKSRLYKWAGDA 222
+V+ GS+ F A AL V AP Y SY I V L
Sbjct: 94 VVITPGSSGGFLLAFTALFDSGDR----VGIGAPGYPSYRQILRALGLVPVDLP--TAPE 147
Query: 223 KRFNKDGPYIE-------LVTSPNNPDGSV--RQ------SVVNRSGGILV-----HDLA 262
R +V SP NP G++ G + H +
Sbjct: 148 NRLQPVPADFAGLDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIE 207
Query: 263 YYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSK 322
Y T++ D ++ + SK G R+GW +V + + + + + + I
Sbjct: 208 YEAKAVTALEL-TDECYVINSFSKYFSMTGWRVGWMVVPE-DQVRVVERIAQNMFICAPH 265
Query: 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382
SQ+ A L + E +K R + + L P+
Sbjct: 266 ASQVAALAALD----------CDAEL------QANLDVYKANRKLMLE-RL---PKAG-- 303
Query: 383 FCTFLGRAFEPQPAF-AWLKCEQEIED----CESFLKGNKILTRSGKHFGFS--PKYVRI 435
R P AF + +D L+ + G F +R
Sbjct: 304 ----FTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRF 359
Query: 436 S 436
S
Sbjct: 360 S 360
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 59/415 (14%), Positives = 132/415 (31%), Gaps = 88/415 (21%)
Query: 76 PSPSSSLTSTDIQSQDGGERIINVDHGDPTMYEKYW--QKVGDKTTIVIPGWQSLSYFSD 133
+P ++ + + +I++ GDPT++ +V + + Y +
Sbjct: 36 FNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGY-AP 94
Query: 134 VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPIS 193
+E+ + + +++ +G +Q L L++ +
Sbjct: 95 SIGF-----LSSREEIASYYHCPEAPLEAKD-VILTSGCSQAIDLCLAVLANPGQN---- 144
Query: 194 VVSAAPYYSSYPSITDC--VKSRLYKWAGDAKRFNKDGPYIE----------LVTSPNNP 241
++ P +S Y ++ + ++ +LY K + D +E +V +P+NP
Sbjct: 145 ILVPRPGFSLYKTLAESMGIEVKLYN-LLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNP 203
Query: 242 DGSV--RQSV-----VNRSGGILV------HDLAYYWPQYTSITYPADHDLMLFT---VS 285
GSV ++ + V + + D+ + +Y + + +L + ++
Sbjct: 204 CGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPIL-SCGGLA 262
Query: 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPS--- 342
K G R+GW L+ D + + G+ K SQ C
Sbjct: 263 KRWLVPGWRLGWILIHD-RRDIFGNEIRD----GLVKLSQRI--------LGPCTIVQGA 309
Query: 343 -----GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF 397
F+ + K L ++P L R P A
Sbjct: 310 LKSILCRTPGEFYH----NTLSFLKSNADLCYG-ALAAIPGL---------RPVRPSGAM 355
Query: 398 -AWLKCE----QEIED----CESFLKGNKILTRSGKHFGFSPKYVRISMLDRDEN 443
+ E E E+ E + + F + P ++R+ + +
Sbjct: 356 YLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY-PNFIRVVITVPEVM 409
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 59/342 (17%), Positives = 104/342 (30%), Gaps = 95/342 (27%)
Query: 166 IVVGTGSTQLFQAALYA-LSSQDASEPISVVSAAPYYSSYPSITDCV-----KSRLYKWA 219
+ V T+ Q A L D E ++ P Y Y V K Y+
Sbjct: 104 VRVTAAVTEALQLIFGALLDPGD--E---ILVPGPSYPPYT---GLVKFYGGKPVEYR-T 154
Query: 220 GDAKRFNKDGPYIE----------LVTSPNNPDGSV-RQSVVNRSGGILV-HDLA----- 262
+ + + D I V +PNNP G++ + + I +++
Sbjct: 155 IEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDE 214
Query: 263 -Y----YWPQYTSITYPADHDLMLFT-----VSKSTGHAGTRIGWALVKDMEVAKKMTKY 312
Y Y ++ S + +SK G R+G+ D E K+++
Sbjct: 215 IYDLMTYEGEHISP---GSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPE--NKLSEV 269
Query: 313 IELNTIGVSKDSQLRAAKVLKVVSDSCKPS-----------GSEDECFFEFTNHQMSTRW 361
E + + +++R C + G D + +
Sbjct: 270 RE----AIDRLARIR----------LCPNTPAQFAAIAGLTGPMDYL------KEYMKKL 309
Query: 362 KQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKCEQE-IED----CESFLKG 415
K+ R + K L +P + +PQ AF + K E ++ L
Sbjct: 310 KERRDYIYK-RLNEIPGIS---T------TKPQGAFYIFPKIEVGPWKNDKEFVLDVLHN 359
Query: 416 NKILTRSGKHFGFS-PKYVRISMLDRDENYNLFVQRLSKILS 456
+L G FG + R L E + R K +
Sbjct: 360 AHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMK 401
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 47/329 (14%), Positives = 97/329 (29%), Gaps = 88/329 (26%)
Query: 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC--VKSRLYKWAGDAK 223
+V+ +G + A+ A+ + P + Y ++ + Y
Sbjct: 107 VVLCSGGSHGILMAITAICDAGD-Y---ALVPQPGFPHYETVCKAYGIGMHFYN-CRPEN 161
Query: 224 RFNKDGPYIE----------LVTSPNNPDGSV--RQSV-----VNRSGGI---------- 256
+ D I +VT+P+NP GS R+ V + +
Sbjct: 162 DWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG 221
Query: 257 LVHDLAYYWPQYTSITYPADHDLMLFT-----VSKSTGHAGTRIGWALVKDMEVAKKMTK 311
+V +TS+ AD + + +K+ G R+GW L D
Sbjct: 222 MVFKGKDPNATFTSV---ADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPH--GNGPS 276
Query: 312 YIELNTIGVSKDSQLRAAKVLKVVSDSCKPS--------GSEDECFFEFTNHQMSTRWKQ 363
++E G+ + L C + + + Q+ + ++
Sbjct: 277 FLE----GLKRVGMLV--------CGPCTVVQAALGEALLNTPQEHLD----QIVAKIEE 320
Query: 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKCE----QEIED----CESFLK 414
M + + L P+ A + + ++I+ E L+
Sbjct: 321 SAMYLYN-HIGECIGLA---P------TMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLE 370
Query: 415 GNKILTRSGKHFGFSPKYVRISMLDRDEN 443
+ G F P + R++ E
Sbjct: 371 EENVQVLPGTIFHA-PGFTRLTTTRPVEV 398
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 34/244 (13%), Positives = 69/244 (28%), Gaps = 56/244 (22%)
Query: 237 SPNNPDGSVR-----QSVVN---RSGGILVHDLAY---YW---P----QYTSITYPADHD 278
SPNNP G S V + IL++D Y Y P + +
Sbjct: 162 SPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFK 221
Query: 279 --LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVS 336
L++ ++SK + G R G+ D + +K + + Q +
Sbjct: 222 NVLVIHSLSKRSSAPGLRSGFI-AGDSRLLEKYKAFRAYLGYTSANAIQKASEAAW---- 276
Query: 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA 396
D+ E + +K +
Sbjct: 277 --------LDDRHAE----FFRNIYANNLKLARKI---------------FKNTLIYPYS 309
Query: 397 F-AWLKCEQEIEDCESFLKGNKILTRSGKHFGFSP---KYVRISMLDRDENYNLFVQRLS 452
F +L + ++ + I+T + G + YVR++++ ++ +
Sbjct: 310 FYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIE 369
Query: 453 KILS 456
Sbjct: 370 TYRE 373
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 47/316 (14%), Positives = 94/316 (29%), Gaps = 82/316 (25%)
Query: 166 IVVGTGSTQ-LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVK--------SRLY 216
+++ G+ LF A ++ D + V P Y + V+ +L
Sbjct: 105 LIITPGTQGALFLAVAATVARGD--K---VAIVQPDYFANR---KLVEFFEGEMVPVQLD 156
Query: 217 KWAGDAKRFNKDGPYIE----------LVTSPNNPDGSV--RQ------SVVNRSGGILV 258
+ D R D +E L ++PNNP G V + ++ R G ++
Sbjct: 157 YVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVI 216
Query: 259 HD-----LAYYWPQYTSI-TYP---ADHDLMLFTVSKSTGHAGT--RIGWALVKDMEVAK 307
D L Y YT + A++ + + SK+ + + R+G A +
Sbjct: 217 ADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKT--ESLSGYRLGVA-FGSRAIIA 273
Query: 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR-M 366
+M K + ++ + SQ + R + +R
Sbjct: 274 RMEKLQAIVSLRAAGYSQAVLRGWFD---------EAPGWM------EDRIARHQAIRDE 318
Query: 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKCEQEIED----CESFLKGNKILTR 421
+ L + PQ + + + + ++
Sbjct: 319 LL--HVLRGCEGVF---A------RTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVT 367
Query: 422 SGKHFGFS-PKYVRIS 436
G F VR++
Sbjct: 368 PGTEFSPHTADSVRLN 383
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 64/316 (20%), Positives = 108/316 (34%), Gaps = 86/316 (27%)
Query: 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---- 220
++ + G+ AL+S E ++ APY+ Y AG
Sbjct: 101 NLYMTMGAAASLSICFRALTSDAYDE---FITIAPYFPEYKVFV--------NAAGARLV 149
Query: 221 ----DAKRFNKDGPYIE----------LVTSPNNPDGSV--RQS------VVNRSGGILV 258
D + F D +E ++ SPNNP G+V ++ ++ + +
Sbjct: 150 EVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIG 209
Query: 259 HD-----------LAYYWPQYTSITYPADHDLMLFTVSKSTGHA--GTRIGWALVKDMEV 305
+ Y + +T D+ L+ ++ SKS + G RIG+ LV D EV
Sbjct: 210 RPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS--LSLPGERIGYVLVPD-EV 266
Query: 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365
K Y + G + + C PS + +K+ R
Sbjct: 267 YDKAELYAAVCGAGRA-------------LGYVCAPSLFQKMIVKCQGATGDINAYKENR 313
Query: 366 MAVQKSGLFSVPELPSQFCTFLG-RAFEPQPAF-AWLKCEQEIEDCESF---LKGNKILT 420
+ L +G F+P AF ++K +D +F K +L
Sbjct: 314 DLL-------YEGLTR-----IGYHCFKPDGAFYMFVKA--LEDDSNAFCEKAKEEDVLI 359
Query: 421 RSGKHFGFSPKYVRIS 436
+ FG P +VRIS
Sbjct: 360 VAADGFG-CPGWVRIS 374
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 49/357 (13%), Positives = 99/357 (27%), Gaps = 87/357 (24%)
Query: 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----------SQDASEPI 192
F +V + + +I + GS F + S
Sbjct: 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDK 145
Query: 193 SVVSA-APYYSSYPSITDCVKS-RLYK---------WAGDAKRFNKDGPYIE-------- 233
S++ P Y Y + + ++ D +E
Sbjct: 146 SILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG 205
Query: 234 -----LVTSPNNPDGSV-----RQSVV---NRSGGILVHDLAYYWPQYTSITYPA----- 275
+ P NP G+V + R L+ D AY P I A
Sbjct: 206 RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWD 265
Query: 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK---YIELNTIGVSKDSQLRAAKVL 332
++ ++ F++SK G G R G + +V + ++ + L ++ A ++
Sbjct: 266 NNTILCFSLSK-IGLPGMRTGIIVADA-KVIEAVSAMNAVVNLAP---TRFGAAIATPLV 320
Query: 333 KVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392
+ + ++ +++ K ++ + P +
Sbjct: 321 A--------NDRIKQLSDN----EIKPFYQKQATLAVKLLKQALGDYPLMI-------HK 361
Query: 393 PQPA-FAWLKCEQEIEDCESF---LKGNKILTRSGKHFGFSPK---------YVRIS 436
P+ A F WL + LK L ++F +R+S
Sbjct: 362 PEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMS 418
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 53/302 (17%), Positives = 101/302 (33%), Gaps = 75/302 (24%)
Query: 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG----- 220
I++ GS+ AL ++ D E V+ P Y Y + ++ G
Sbjct: 92 IIITGGSSLGLFFALSSII-DDGDE---VLIQNPCYPCYKNFI--------RFLGAKPVF 139
Query: 221 ---DAKRFNKDGPYIE------LVTSPNNPDGSV----RQSVVNRSGGILVHD-----LA 262
+ + + ++ SP+NP G V + ++ D L
Sbjct: 140 CDFTVESLEE---ALSDKTKAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLV 196
Query: 263 YYWPQYTSITYPADHD--LMLFTVSKSTGHAGT--RIGWALVKDMEVAKKMTKYIELNTI 318
Y Y++I + + + +++ SK +A T RIG+ + + E+ + + K + I
Sbjct: 197 YEGKCYSAIEFDENLEKTILINGFSKL--YAMTGWRIGYVIS-NDEIIEAILKLQQNLFI 253
Query: 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378
SQ A K + + + M + + R V +
Sbjct: 254 SAPTISQYAALKAFE---------KETEREI-----NSMIKEFDRRRRLV-------LKY 292
Query: 379 LPSQFCTFLG-RAFEPQPAF-AWLKCEQEIED-CESFLKGNKILTRSGKHFGFSPK-YVR 434
+ G P A+ + ++ + LK + G FG K Y+R
Sbjct: 293 VKD-----FGWEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIR 347
Query: 435 IS 436
IS
Sbjct: 348 IS 349
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 456 | |||
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.98 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.97 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.97 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.97 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.97 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.97 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.97 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.97 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.97 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.97 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.96 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.96 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.96 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.96 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.96 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.96 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.96 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.96 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.96 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.96 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.96 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.96 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.96 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.96 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.96 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.96 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.95 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.95 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.95 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.95 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.95 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.95 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.95 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.95 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.95 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.95 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.95 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.95 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.95 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.95 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.95 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.95 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.95 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.95 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.94 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.94 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.94 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.94 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.94 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.94 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.94 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.94 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.94 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.94 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.94 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.94 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.94 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.93 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.93 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.93 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.93 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.93 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.93 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.93 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.93 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.93 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.93 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.93 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.93 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.93 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.92 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.92 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.92 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.92 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.92 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.92 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.92 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.91 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.91 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.91 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.91 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.91 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.91 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.91 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.9 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.9 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.9 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.9 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.9 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.9 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.9 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.9 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.89 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.89 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.89 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.89 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.89 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.89 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.88 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.87 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.79 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.87 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.86 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.86 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.85 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.85 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.85 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.84 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.83 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.83 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.83 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.8 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.8 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.8 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.79 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.79 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.79 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.79 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.78 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.77 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.76 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.75 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.72 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.72 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.71 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.69 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.68 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.68 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.68 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.66 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.62 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.57 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.55 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.51 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.0 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.96 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.72 |
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-52 Score=419.77 Aligned_cols=393 Identities=32% Similarity=0.584 Sum_probs=307.7
Q ss_pred CCCchhhHHHHhhhhhccccCCCceeecccccccccCCCCCCcccccccc-----chhhhcCCCCeEEecCCCCCCCchh
Q 012785 36 NFDSSFSLQQQRRSVMAGCVLKEKEHVSERTHLSLSSSPSPSPSSSLTST-----DIQSQDGGERIINVDHGDPTMYEKY 110 (456)
Q Consensus 36 ~~w~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~l~~g~p~~~~~~ 110 (456)
++|+.+|++|||++|++.|++||+.|+|+ ...++ ...++|+ ..|+...+.++|+|+.|+|++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~ 72 (427)
T 2hox_A 2 MTWTMKAAEEAEAVANINCSEHGRAFLDG-----IISEG----SPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEY 72 (427)
T ss_dssp CSTTHHHHHHHHHHHTSCCGGGEECCTTS-----CEETT----EECCEECTTEESTTSCEECTTCCEECCSCCCGGGHHH
T ss_pred cchhHHHHHHhHhhhccccCcCCceeecc-----ccccC----CcccccccccCCCCCcccCCCceEEecCcCCCCCCCH
Confidence 57999999999999999999999999993 43332 2455665 3566667778999999999998877
Q ss_pred Hhhhccccccc-ccCccccccccCCC-CcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-----
Q 012785 111 WQKVGDKTTIV-IPGWQSLSYFSDVR-NLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----- 183 (456)
Q Consensus 111 ~~~~~~~~~~~-~~~~~~~~~y~~~~-G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----- 183 (456)
++.+... ..+ ..+... ..|++.. | +...++||++||+|++..+....++++|++|+|+++++.+++.+|
T Consensus 73 ~v~~a~~-~~l~~~~~~~-~~Y~~~~~G--~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~ 148 (427)
T 2hox_A 73 WKQHKEA-SAVLVSPWHR-MSYFFNPVS--NFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMT 148 (427)
T ss_dssp HTTSHHH-HCEEECTTTT-CSSSCSSCC--TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTT
T ss_pred HHHHhHH-hhhhcCCccc-ccCCCCCCC--ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccc
Confidence 7765422 122 223322 2387776 7 011399999999999876665445789999999999999999999
Q ss_pred ---cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccC---CCeEEEEcCCCCCCcccchHHhhhcCcEE
Q 012785 184 ---SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKD---GPYIELVTSPNNPDGSVRQSVVNRSGGIL 257 (456)
Q Consensus 184 ---~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~---~~~~i~v~~P~NPtG~~~~~l~~~~~~~i 257 (456)
+++|| +|++++|+|+.+...++..|.+++.+.+|.+.++.. ++++++++|||||||.+++++++ ++..
T Consensus 149 ~~~~~~Gd----~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~l~--~~~~ 222 (427)
T 2hox_A 149 ATPDAPES----KVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIK--GCKS 222 (427)
T ss_dssp TCTTSCCE----EEEECSSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCCCSST--TCEE
T ss_pred cccCCCCC----EEEEeCCCcccHHHHHHHcCCeeeeecCCHHHHHHhhcCCceEEEEcCCCCCcccccHHHHc--CCCE
Confidence 89999 999999999999999999999999998888888653 57899999999999999996554 5678
Q ss_pred EeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhC
Q 012785 258 VHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 258 I~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
|.|++|+++.........+++|+++||||.+|++|+|+||++++++++++++.+.+.....+++.+.|.++..+|+...+
T Consensus 223 i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~ 302 (427)
T 2hox_A 223 IYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVA 302 (427)
T ss_dssp EEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeecccCCCCCccccCCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchh
Confidence 99999886322212122678999999999999999999999996689999999988777889999999999999984211
Q ss_pred -------CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc--C-CCCcccccccccCCCCCceEEeecCccH-
Q 012785 338 -------SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP--E-LPSQFCTFLGRAFEPQPAFAWLKCEQEI- 406 (456)
Q Consensus 338 -------~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~f~~~~~~~~~- 406 (456)
+ .++++++.++.++++++.+.+.|++.+++.+. . |.+ ++++....+..++|+|++++.+.
T Consensus 303 ~l~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~p~~g~f~~~~~~~~~~ 373 (427)
T 2hox_A 303 MVKTQKGT-------MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEY--CNYFRRMRPPSPSYAWVKCEWEED 373 (427)
T ss_dssp HHHHHTTS-------TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEE--ETTTTEEECCCCSEEEEEECSGGG
T ss_pred hhccccch-------hHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccc--cccccccCCCCceEEEEECCCcHH
Confidence 1 25688899999999999999999987555441 1 111 11111122334459999997533
Q ss_pred HHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 407 EDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 407 ~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
+.+..+++++||.++||+.|+.++++||||++.+++++++++++|+++++
T Consensus 374 ~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 374 KDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp CSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 34555667899999999999866789999998888999999999998864
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-50 Score=400.80 Aligned_cols=358 Identities=54% Similarity=0.949 Sum_probs=290.3
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCC-----HHHHHHHHHHHHHhcCccCCCce
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLE-----PEFAKEVVRLHKVVGNAITENHH 165 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~-----~~lr~aia~~~~~~g~~~~~~~~ 165 (456)
..++++|+|+.|+|+++.++++..................|++..| . ++||++||+|++.+|....++++
T Consensus 19 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G-----~~~~~~~~lr~aia~~~~~~g~~~~~~~~ 93 (391)
T 3bwn_A 19 PMSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTN-----LCWFLEPELEDAIKDLHGVVGNAATEDRY 93 (391)
T ss_dssp CTTTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTS-----SSTTSCHHHHHHHHHHHHHHCSBCCSSSE
T ss_pred cCCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCC-----cccccCHHHHHHHHHHHHhcCCCCCCCCe
Confidence 3556789999999999888777765322222122223457999888 6 99999999999988888765579
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccccCCCeEEEEcCCCCCCccc
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~i~v~~P~NPtG~~ 245 (456)
|++|+|+++++.+++++++++||..+.+|++++|+|+.|...++..|++++.++.|.++++..+++++++++||||||.+
T Consensus 94 i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~k~v~l~~p~NPtG~~ 173 (391)
T 3bwn_A 94 IVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWGFDKKGPYIELVTSPNNPDGTI 173 (391)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTTCCCCSCEEEEEESSCTTTCCC
T ss_pred EEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHHcCCCCCEEEEECCCCCCCchh
Confidence 99999999999999999998887444479999999999999999999999999999888886678999999999999999
Q ss_pred chHHhhh-cC--cEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCCh
Q 012785 246 RQSVVNR-SG--GILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 246 ~~~l~~~-~~--~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
+++++++ ++ ++||+||+|.+....++....+++|+++||||++|++|+|+||++++++++++.+...+.....+++.
T Consensus 174 ~~~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~ 253 (391)
T 3bwn_A 174 RETVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSK 253 (391)
T ss_dssp CCCCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCH
Confidence 9998876 66 99999999996444444445678999999999999999999999983389999999988767789999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
+.|.++..+|+...+... .....+++++++++.++++++.+.+.|++++++.+..|.|++++|++...++.+.|+|+++
T Consensus 254 ~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~ 332 (391)
T 3bwn_A 254 ESQVRTAKILNVLKETCK-SESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGT 332 (391)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEE
T ss_pred HHHHHHHHHHhCcchhcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecC
Confidence 999999999984210000 0000146899999999999999999999886677777777776665544566777999999
Q ss_pred CccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 403 EQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 403 ~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+. .+.+.++++++||.++||+.|+.+++++|||++.+++++++++++|++++
T Consensus 333 ~~-~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~ 384 (391)
T 3bwn_A 333 KE-ETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMK 384 (391)
T ss_dssp SS-SCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC
T ss_pred Cc-HHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 74 34677888999999999999987678999999888899999999999876
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=347.06 Aligned_cols=327 Identities=20% Similarity=0.267 Sum_probs=264.2
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++++|+|+.|+|+++.++.+.+... ..+..+ ...|++..| .++||++++++++. +|.... +++|++|+
T Consensus 29 ~~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~ 98 (385)
T 1b5p_A 29 QGVDLVALTAGEPDFDTPEHVKEAAR-RALAQG---KTKYAPPAG-----IPELREALAEKFRRENGLSVT-PEETIVTV 98 (385)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHTTCCCCC-GGGEEEES
T ss_pred cCCCEEEecCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-hHHEEEcC
Confidence 45678999999998876655543321 122222 235888778 59999999999975 565554 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P~ 239 (456)
|+++++++++++++++|| +|++++|+|+.+...++..|.+++.++.|. +.++. .+++++++++||
T Consensus 99 g~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 174 (385)
T 1b5p_A 99 GGSQALFNLFQAILDPGD----EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPN 174 (385)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSC
T ss_pred ChHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCC
Confidence 999999999999999999 999999999999999999999998877653 23332 257899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCCC----CCCC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT----SITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~----~~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
||||.+++. +|+++|+++|+||+|.+..+. ++.. ..+++|+++||||.+|++|+|+||++++ ++++
T Consensus 175 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~-~~~~ 253 (385)
T 1b5p_A 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGP-KEVI 253 (385)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECC-HHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeC-HHHH
Confidence 999999872 788999999999999864331 2211 1278999999999999999999999996 9999
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+.+.+.+...+.+++.+.|.++.++|+....+ .+++++.++.++++++.+.+.|+++ ++.+..+++++
T Consensus 254 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~--- 321 (385)
T 1b5p_A 254 KAMASVSRQSTTSPDTIAQWATLEALTNQEAS--------RAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAF--- 321 (385)
T ss_dssp HHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTT---
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeE---
Confidence 99988877677889999999999988610002 4678899999999999999999987 46777777777
Q ss_pred ccccCCCCCceEEeecC---ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 387 LGRAFEPQPAFAWLKCE---QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~---~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++ .+.+.+.+.|.++||.++||..|+. ++++|||++.+++++++++++|+++++
T Consensus 322 ----------~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~-~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 322 ----------YVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-FGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp ----------EEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred ----------EEEEecCCCCCCHHHHHHHHHHCCeEEecccccCC-CCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 8998885 2456677777799999999999986 789999998889999999999998763
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=337.85 Aligned_cols=323 Identities=18% Similarity=0.230 Sum_probs=262.9
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCc-cCCCc-eEE
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNA-ITENH-HIV 167 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~-~~~~~-~I~ 167 (456)
..++++|||+.|+|+++.++.+.+.... .......|++..| .++||+++++++.. +|.. .. ++ +|+
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~-----~~~~~~~y~~~~g-----~~~lr~~la~~l~~~~g~~~~~-~~~~i~ 95 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTA-----SLHELEKYPLTAG-----LPELRQACANWLKRRYDGLTVD-ADNEIL 95 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHH-----TGGGGGSCCCTTC-----CHHHHHHHHHHHHHHTTTCCCC-TTTSEE
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHH-----HhhhccCCCCCCC-----cHHHHHHHHHHHHHhcCCCCCC-CCCeEE
Confidence 3467899999999999877766654221 1122456888888 59999999999954 4554 43 46 999
Q ss_pred EccCHHHHHHHHHHHhcCCC-----CCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeE
Q 012785 168 VGTGSTQLFQAALYALSSQD-----ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYI 232 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~g-----d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~ 232 (456)
+|+|+++++++++++++.+| | +|+++.|+|+.+...++..|.+++.++.+. +.++. .++++
T Consensus 96 ~t~g~~~al~~~~~~~~~~g~~~~~d----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~ 171 (396)
T 3jtx_A 96 PVLGSREALFSFVQTVLNPVSDGIKP----AIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKL 171 (396)
T ss_dssp EESSHHHHHHHHHHHHCCC---CCCC----EEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEE
T ss_pred EcCCcHHHHHHHHHHHhCCCCccCCC----EEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEE
Confidence 99999999999999999986 7 999999999999999999999998877643 33432 26789
Q ss_pred EEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCCC---CC---------CCCCCcEEEecCccccCCCC
Q 012785 233 ELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTS---IT---------YPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 233 i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~---~~---------~~~~~~i~i~S~SK~~g~~G 292 (456)
+++++||||||.+++ ++|+++|+++|+||+|.+..+.+ .. ...+++++++||||.++++|
T Consensus 172 v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (396)
T 3jtx_A 172 VFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG 251 (396)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG
T ss_pred EEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcc
Confidence 999999999999987 27889999999999999743332 11 12678999999999999999
Q ss_pred ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 293 TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 293 ~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
+|+||++++ +++++.+.......+++++++.|.++.++|+ + ++++++.++.++++++.+.+.|++.
T Consensus 252 ~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~- 317 (396)
T 3jtx_A 252 LRSGFVAGD-AELLKNFLLYRTYHGSAMSIPVQRASIAAWD---D---------EQHVIDNRRLYQEKFERVIPILQQV- 317 (396)
T ss_dssp GCCEEEEEC-HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---C---------CHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred cceEEEEeC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 999999996 9999999988877788999999999999987 2 4688999999999999999999875
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHH-HhCCEEeecCCCCCC-------CCCeEEEEecCChhH
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFL-KGNKILTRSGKHFGF-------SPKYVRISMLDRDEN 443 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l-~~~gI~v~pg~~fg~-------~~~~iRis~~~~~e~ 443 (456)
+.+..+.+++ |+|++++. +...+.+.| +++||.+.||+.|+. ..+++||+++.++++
T Consensus 318 -~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~ 383 (396)
T 3jtx_A 318 -FDVKLPDASF-------------YIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVAT 383 (396)
T ss_dssp -SCCCCCSSSS-------------EEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHH
T ss_pred -CCccCCCeeE-------------EEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHH
Confidence 3455566666 89999974 444555544 678999999999974 468999999889999
Q ss_pred HHHHHHHHHhhhC
Q 012785 444 YNLFVQRLSKILS 456 (456)
Q Consensus 444 i~~~l~~L~~~l~ 456 (456)
+++++++|+++++
T Consensus 384 i~~~l~~l~~~l~ 396 (396)
T 3jtx_A 384 CVKAAEDIVSLYR 396 (396)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=344.90 Aligned_cols=345 Identities=18% Similarity=0.189 Sum_probs=263.5
Q ss_pred ccccccchhhhcCCCCeEEecCCCCCCCchhHhhhcccccc-----cc-cCccccccccCCCCcccCCCHHHHHHHHHHH
Q 012785 80 SSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTI-----VI-PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLH 153 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~-----~~-~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~ 153 (456)
.++++.... ...++++|+|+.|.|+...++.......... +. ........|++..| +++||++|++++
T Consensus 18 ~~~~~~~~~-~~~~~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G-----~~~lr~~ia~~l 91 (425)
T 2r2n_A 18 PIRTMTDIL-SRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKRALQYSPSAG-----IPELLSWLKQLQ 91 (425)
T ss_dssp SGGGHHHHH-HHSCTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHHHHTSCCCTTC-----CHHHHHHHHHHH
T ss_pred hHHHHHHHh-hcCCCCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchhhhcCCCCCCC-----CHHHHHHHHHHH
Confidence 444444431 1123578999999998765442111100000 00 00111246888899 599999999999
Q ss_pred HH-hcCccCC------CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----
Q 012785 154 KV-VGNAITE------NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD----- 221 (456)
Q Consensus 154 ~~-~g~~~~~------~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d----- 221 (456)
.. +|....+ +++|++|+|+++++++++++++++|| +|++++|+|+.+...++..|.+++.++.|
T Consensus 92 ~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d 167 (425)
T 2r2n_A 92 IKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGD----NVLLDEPAYSGTLQSLHPLGCNIINVASDESGIV 167 (425)
T ss_dssp HHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHGGGTCEEEEECEETTEEC
T ss_pred HHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCEEEEeCcCCCCCC
Confidence 54 5655432 36999999999999999999999999 99999999999999999999999887764
Q ss_pred cccccc---------------CCCeEEEE-cCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC
Q 012785 222 AKRFNK---------------DGPYIELV-TSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT 272 (456)
Q Consensus 222 ~~~l~~---------------~~~~~i~v-~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~ 272 (456)
.+.++. .+++++++ ++||||||.+++. +|+++|+++|+||+|.+..+ .++.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~ 247 (425)
T 2r2n_A 168 PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFL 247 (425)
T ss_dssp HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTG
T ss_pred HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCcc
Confidence 333321 24677765 7899999999982 78899999999999974222 2222
Q ss_pred --CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 273 --YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 273 --~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
...+++|+++||||.++ +|+|+||++++ +++++.+.......+++++.+.|.++.++|+...++ .+.+++
T Consensus 248 ~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~------~~~~~~ 319 (425)
T 2r2n_A 248 SMDVDGRVIRADSFSKIIS-SGLRIGFLTGP-KPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEE------GFMAHV 319 (425)
T ss_dssp GGCTTSCEEEEEESTTTTC-STTCCEEEEEE-HHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred ccCCCCCEEEEccchhhcc-CccceEEEecC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccc------hHHHHH
Confidence 23468999999999999 99999999998 899999998887778899999999999999843211 135788
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCc-cccCCCCcccccccccCCCCCceEEeecCc--cH-HHHHHHHHhCCEEeecCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKS-GLF-SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EI-EDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~-~~~~~~l~~~gI~v~pg~~ 425 (456)
+++++.++++++.+.+.|++. +++ .+..|.+++ |+|++++. +. +.+.+.+.++||.++||..
T Consensus 320 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~ 386 (425)
T 2r2n_A 320 DRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGM-------------FLWIKVKGINDVKELIEEKAVKMGVLMLPGNA 386 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSS-------------EEEEEETTCSCCHHHHHTHHHHTTEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceE-------------EEEEEeCCCCCHHHHHHHHHHHCCcEEechhh
Confidence 999999999999999999874 444 455666776 89999964 33 4467888899999999999
Q ss_pred CCC----CCCeEEEEec-CChhHHHHHHHHHHhhh
Q 012785 426 FGF----SPKYVRISML-DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 fg~----~~~~iRis~~-~~~e~i~~~l~~L~~~l 455 (456)
|+. ..+++||+++ .+++++++++++|++++
T Consensus 387 f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 387 FYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp GSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 974 2589999998 59999999999999876
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=340.64 Aligned_cols=327 Identities=16% Similarity=0.139 Sum_probs=260.7
Q ss_pred CCCeEEecCCCCCCC--chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHH-HHhcCccCCCceEEEc
Q 012785 93 GERIINVDHGDPTMY--EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLH-KVVGNAITENHHIVVG 169 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~-~~~g~~~~~~~~I~~t 169 (456)
.+++|||+.|.|+.. +++.+.+... ..+.........|++..| .++||++|++++ ..+|.+ ++++|++|
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~-~~l~~~~~~~~~Y~~~~g-----~~~lr~~ia~~~~~~~g~~--~~~~v~~t 146 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILV-EIMEKYADKALQYGTTKG-----FTPLRETLMKWLGKRYGIS--QDNDIMIT 146 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHH-HHHHHSHHHHHSCCCTTC-----CHHHHHHHHHHHHHHHCCC--TTSEEEEE
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHH-HHHHhhhHHHhCCCCCCC-----cHHHHHHHHHHHHHhcCcC--ChhhEEEe
Confidence 357899999998743 2333332211 122222112346888778 599999999999 556665 35799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----cccccc-------C--CCeEE-E
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFNK-------D--GPYIE-L 234 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~-------~--~~~~i-~ 234 (456)
+|+++++++++++++++|| +|++++|+|+.+...++..|.+++.++.| .+.++. . ++++| +
T Consensus 147 ~G~~~al~~~~~~l~~~Gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~ 222 (448)
T 3aow_A 147 SGSQQALDLIGRVFLNPGD----IVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYT 222 (448)
T ss_dssp SSHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcHHHHHHHHHHHHcCCCC----EEEEeCCChHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEE
Confidence 9999999999999999999 99999999999999999999999887764 333321 2 57887 5
Q ss_pred EcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC--CCCCCcEEEecCccccCCCCceEEEEE
Q 012785 235 VTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT--YPADHDLMLFTVSKSTGHAGTRIGWAL 299 (456)
Q Consensus 235 v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~ 299 (456)
+++||||||.+++ ++|+++|++||+||+|.+..+ .++. ...+++++++||||.++ +|+|+||++
T Consensus 223 ~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~ 301 (448)
T 3aow_A 223 VPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMV 301 (448)
T ss_dssp CCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEE
T ss_pred CCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEE
Confidence 7899999999987 278999999999999986432 2222 23468999999999999 999999999
Q ss_pred EeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C-Ccccc
Q 012785 300 VKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G-LFSVP 377 (456)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~-~~~~~ 377 (456)
++ +++++++.......+++++++.|.++.++|+ ++ ..+++++++++.++++++.+.+.|++. + ++.+.
T Consensus 302 ~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~---~~------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~ 371 (448)
T 3aow_A 302 GD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVD---GG------YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWT 371 (448)
T ss_dssp EC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH---TT------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEC
T ss_pred eC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---hC------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe
Confidence 97 9999999888776778899999999999997 22 136789999999999999999999874 5 46776
Q ss_pred CCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecC-ChhHHHHHHHHH
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLD-RDENYNLFVQRL 451 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~-~~e~i~~~l~~L 451 (456)
.|.+++ |+|++++. +...+.+.|.++||.++||..|+. .++++||+++. +++++++++++|
T Consensus 372 ~p~~g~-------------~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L 438 (448)
T 3aow_A 372 KPEGGM-------------FIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438 (448)
T ss_dssp CCSBSS-------------EEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHH
T ss_pred CCCccE-------------EEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 777776 89999974 456677777788999999999963 46899999987 789999999999
Q ss_pred Hhhh
Q 012785 452 SKIL 455 (456)
Q Consensus 452 ~~~l 455 (456)
++++
T Consensus 439 ~~~l 442 (448)
T 3aow_A 439 AETI 442 (448)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=333.24 Aligned_cols=317 Identities=15% Similarity=0.203 Sum_probs=260.6
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+ ++|||+.|+|+++.++.+.+..... + .....|++..| .++||+++++++.. +|.... +++|++|+
T Consensus 22 ~g-~~i~l~~~~~~~~~~~~v~~a~~~~-~----~~~~~y~~~~g-----~~~lr~~la~~l~~~~g~~~~-~~~i~~t~ 89 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFETPKFIQDALKNH-T----HSLNIYPKSAF-----EESLRAAQRGFFKRRFKIELK-ENELISTL 89 (376)
T ss_dssp SS-CCCBCSSCCCCSCCCHHHHHHHHTT-G----GGGGSCCCTTC-----CHHHHHHHHHHHHHHHSCCCC-GGGEEEES
T ss_pred cC-CEEEeCCCCCCCCCCHHHHHHHHHh-h----hhcCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-HHHEEECc
Confidence 44 8899999999988777666542211 1 23456888888 59999999999954 566544 57999999
Q ss_pred CHHHHHHHHHHHhcCC--CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-c----ccc---CCCeEEEEcCCCC
Q 012785 171 GSTQLFQAALYALSSQ--DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-R----FNK---DGPYIELVTSPNN 240 (456)
Q Consensus 171 G~~~al~~~~~~l~~~--gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~----l~~---~~~~~i~v~~P~N 240 (456)
|+++++++++++++++ || +|+++.|+|+.+...++..|.+++.++.+.+ + ++. .+++++++++|||
T Consensus 90 g~~~al~~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~n 165 (376)
T 3ezs_A 90 GSREVLFNFPSFVLFDYQNP----TIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNN 165 (376)
T ss_dssp SSHHHHHHHHHHHTTTCSSC----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCT
T ss_pred CcHHHHHHHHHHHcCCCCCC----EEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCC
Confidence 9999999999999999 99 9999999999999999999999998887755 2 222 2578999999999
Q ss_pred CCcccchH--------HhhhcCcEEEeeecCCCCCCCC--CC--C--------CCCCcEEEecCccccCCCCceEEEEEE
Q 012785 241 PDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS--IT--Y--------PADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 241 PtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~--~~--~--------~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
|||.+++. +|+++|+++|+||+|.+..+.. .. . ..+++++++||||.+|++|+|+||+++
T Consensus 166 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 245 (376)
T 3ezs_A 166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG 245 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee
Confidence 99999872 6889999999999999743322 11 1 467899999999999999999999999
Q ss_pred eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
+ +++++.+.......+++++++.|.++.++|+ + .+++++.++.++++++.+.+.|+ + +. .+.
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~--~-~~--~~~ 307 (376)
T 3ezs_A 246 D-SRLLEKYKAFRAYLGYTSANAIQKASEAAWL---D---------DRHAEFFRNIYANNLKLARKIFK--N-TL--IYP 307 (376)
T ss_dssp C-HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHH---C---------SHHHHHHHHHHHHHHHHHHHHST--T-CC--CCS
T ss_pred C-HHHHHHHHHHHhhhcCCCChHHHHHHHHHHh---C---------cHHHHHHHHHHHHHHHHHHHHhc--C-CC--CCC
Confidence 6 9999999988877788999999999999998 2 35688999999999999999987 2 32 445
Q ss_pred CcccccccccCCCCCceEEeecCccHHHHHHHHHh-CCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKG-NKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~-~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
+++ |+|++++ +...+.+.|.+ +||.++||+.|+. .++++||+++.+++++++++++|+++++
T Consensus 308 ~~~-------------~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 308 YSF-------------YVYLPVQ-NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp BSS-------------EEEEECS-CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred cce-------------EEEEECC-CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 555 8999998 45556666665 9999999999973 5789999998899999999999998874
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=334.37 Aligned_cols=325 Identities=18% Similarity=0.224 Sum_probs=260.4
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+|||+.|+|+++.++.+.+... ..+..+ ...|++..| .++||++++++++. +|.... +++|++|
T Consensus 28 ~~g~~~i~l~~g~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~v~~t 97 (391)
T 3h14_A 28 EAGRRIIHMEVGQPGTGAPRGAVEALA-KSLETD---ALGYTVALG-----LPALRQRIARLYGEWYGVDLD-PGRVVIT 97 (391)
T ss_dssp HTTCCCEECCCSSCSSCSCHHHHHHHH-HHHC-------------C-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEE
T ss_pred hcCCCeEEccCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----hHHHHHHHHHHHHHHhCCCCC-HHHEEEe
Confidence 467789999999999887765554322 122222 246888778 59999999999964 565554 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------cccccCCCeEEEEcCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNKDGPYIELVTSPNNP 241 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~~~~~~i~v~~P~NP 241 (456)
+|+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.|. +.++..+++++++++||||
T Consensus 98 ~g~~~al~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~v~i~~p~np 173 (391)
T 3h14_A 98 PGSSGGFLLAFTALFDSGD----RVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGLDLAGLMVASPANP 173 (391)
T ss_dssp SSHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTSCCSEEEEESSCTT
T ss_pred cChHHHHHHHHHHhcCCCC----EEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhcCCeEEEECCCCCC
Confidence 9999999999999999999 999999999999999999999998777643 3444446789999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCCC----CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
||.+++ ++|+++|+++|+||+|.+..+. +.....+++++++||||.+|++|+|+||++++ +++++.+
T Consensus 174 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~ 252 (391)
T 3h14_A 174 TGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVP-EDQVRVV 252 (391)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECC-GGGHHHH
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeC-HHHHHHH
Confidence 999987 2788999999999999864332 22233578999999999999999999999996 8899999
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
.......+++++++.|.++.++|+ . ++++++.++.++++++.+.+.|++++...+..+.+++
T Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~l~----~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------ 314 (391)
T 3h14_A 253 ERIAQNMFICAPHASQVAALAALD----C--------DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAF------ 314 (391)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHTT----C--------HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTT------
T ss_pred HHHHhhhccCCCHHHHHHHHHHhC----C--------hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeE------
Confidence 988887888999999999988886 2 6789999999999999999999988655555666766
Q ss_pred cCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 390 AFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +.+.+.+.| +++||.++||+.|+. .++++||+++.+++++++++++|++++
T Consensus 315 -------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 315 -------YVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFM 379 (391)
T ss_dssp -------EEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred -------EEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 89998853 455565554 456999999999975 478999999889999999999999876
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=340.39 Aligned_cols=326 Identities=16% Similarity=0.239 Sum_probs=262.0
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++|||+.|.|++++++.+.+... ..+.. . ....|++..| .++||+++++++.. +|.... +++|++|+
T Consensus 55 ~~~~~i~l~~g~~~~~~~~~v~~a~~-~~~~~-~-~~~~Y~~~~g-----~~~lr~~ia~~l~~~~g~~~~-~~~v~~t~ 125 (447)
T 3b46_A 55 QGRELINLGQGFFSYSPPQFAIKEAQ-KALDI-P-MVNQYSPTRG-----RPSLINSLIKLYSPIYNTELK-AENVTVTT 125 (447)
T ss_dssp TTSCCEECCCCSCSSCCCHHHHHHHH-HHTTS-G-GGGSCCCTTC-----CHHHHHHHHHHHTTTTTSCCC-GGGEEEES
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHH-HHHhC-c-CCCCCCCCCC-----CHHHHHHHHHHHHHhcCCCCC-hhhEEEeC
Confidence 45689999999999887766654322 11221 1 1346888888 59999999999954 455554 46999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------------------cccccc---CC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------------------AKRFNK---DG 229 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------------------~~~l~~---~~ 229 (456)
|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .+
T Consensus 126 G~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 201 (447)
T 3b46_A 126 GANEGILSCLMGLLNAGD----EVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK 201 (447)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHcCCCC----EEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccC
Confidence 999999999999999999 99999999999999999999998766543 333433 36
Q ss_pred CeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCCC----CCCCcEEEecCccccCCCCc
Q 012785 230 PYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SITY----PADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~~----~~~~~i~i~S~SK~~g~~G~ 293 (456)
+++|++++||||||.+++ ++|+++|+++|+||+|.+..+. ++.. ..+++++++|+||.+|++|+
T Consensus 202 ~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 281 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGW 281 (447)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTS
T ss_pred CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcch
Confidence 789999999999999986 2789999999999999864332 2221 24689999999999999999
Q ss_pred eEEEEEE-eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 294 RIGWALV-KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 294 RiG~l~~-~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
|+||+++ + +++++.+.......+++.+++.|.++.++|+... .+++++++++.++++++.+.+.|++++
T Consensus 282 riG~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~g 351 (447)
T 3b46_A 282 RIGWVLSLN-AELLSYAAKAHTRICFASPSPLQEACANSINDAL---------KIGYFEKMRQEYINKFKIFTSIFDELG 351 (447)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH---------HHTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhEEEEeCC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCc---------chHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999 6 9999999888777788999999999999988421 156788999999999999999999874
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc-----------------cHHHHHH-HHHhCCEEeecCCCCCCC-----
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-----------------EIEDCES-FLKGNKILTRSGKHFGFS----- 429 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----------------~~~~~~~-~l~~~gI~v~pg~~fg~~----- 429 (456)
+.+..|.+++ |+|++++. +...+.+ +++++||.+.||+.|+..
T Consensus 352 -~~~~~~~~g~-------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~ 417 (447)
T 3b46_A 352 -LPYTAPEGTY-------------FVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKA 417 (447)
T ss_dssp -CCEECCSBSS-------------EEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGG
T ss_pred -CeecCCCeeE-------------EEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCC
Confidence 6666677777 89998853 2334555 445799999999999642
Q ss_pred -CCeEEEEecCChhHHHHHHHHHHhh
Q 012785 430 -PKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 430 -~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
++++||+++.++|++++++++|+++
T Consensus 418 ~~~~iRls~~~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 418 AENLLRFAVCKDDAYLENAVERLKLL 443 (447)
T ss_dssp GTTEEEEECCSCHHHHHHHHHHGGGG
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 6899999988999999999999875
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=333.25 Aligned_cols=332 Identities=14% Similarity=0.226 Sum_probs=264.3
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++|+|+.|+|++++++.+.+... ..+... ....|++..| ..+||++++++++. +|....+.++|++|+
T Consensus 21 ~~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~l~~~la~~~~~~~~~~~~~~~~i~~~~ 92 (410)
T 3e2y_A 21 ADPSVVNLGQGFPDISPPSYVKEELS-KAAFID--NMNQYTRGFG-----HPALVKALSCLYGKIYQRQIDPNEEILVAV 92 (410)
T ss_dssp TSTTSEECSSCCCCSCCCHHHHHHHH-HHHTCG--GGGSCCCTTC-----CHHHHHHHHHHHHHHHTSCCCTTTSEEEES
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHH-HHHhCc--cccCCCCCCC-----hHHHHHHHHHHHHHHhCCCCCCCCCEEEeC
Confidence 44678999999999887766655322 112221 2346888777 59999999999964 666665437999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----------------cccccc---CCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----------------AKRFNK---DGP 230 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----------------~~~l~~---~~~ 230 (456)
|+++++..++++++++|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .++
T Consensus 93 g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~ 168 (410)
T 3e2y_A 93 GAYGSLFNSIQGLVDPGD----EVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKT 168 (410)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTE
T ss_pred CcHHHHHHHHHHhcCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCc
Confidence 999999999999999999 99999999999999999999988776543 344433 367
Q ss_pred eEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CC---CCCCCCcEEEecCccccCCCCce
Q 012785 231 YIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SI---TYPADHDLMLFTVSKSTGHAGTR 294 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~---~~~~~~~i~i~S~SK~~g~~G~R 294 (456)
+++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++ ....+++++++||||.+|++|+|
T Consensus 169 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r 248 (410)
T 3e2y_A 169 KAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWK 248 (410)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGC
T ss_pred eEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCce
Confidence 89999999999999986 2789999999999999853221 22 22346789999999999999999
Q ss_pred EEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 295 IGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 295 iG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
+||++++ +++++.+.......+++++++.|.++.++|+....... ..++++++.++.++++++.+.+.|++++ +
T Consensus 249 ~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 322 (410)
T 3e2y_A 249 LGWSIGP-AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMD----DPECYFNSLPKELEVKRDRMVRLLNSVG-L 322 (410)
T ss_dssp CEEEECC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTT----STTSHHHHHHHHHHHHHHHHHHHHHTTT-C
T ss_pred EEEEEEC-HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhcccc----chHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 9999996 99999999888777889999999999999873111000 1257889999999999999999999874 6
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc-----c---------HHHHHHHHHhCCEEeecCCCCCC------CCCeEE
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-----E---------IEDCESFLKGNKILTRSGKHFGF------SPKYVR 434 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----~---------~~~~~~~l~~~gI~v~pg~~fg~------~~~~iR 434 (456)
.+..+.+++ |+|++++. + .+.+..+++++||.+.||+.|+. ..+++|
T Consensus 323 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iR 389 (410)
T 3e2y_A 323 KPIVPDGGY-------------FIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVR 389 (410)
T ss_dssp EEEBCSBSS-------------EEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEE
T ss_pred eecCCCccE-------------EEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEE
Confidence 666677777 89988742 1 14455677889999999999964 358999
Q ss_pred EEecCChhHHHHHHHHHHhh
Q 012785 435 ISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 435 is~~~~~e~i~~~l~~L~~~ 454 (456)
|+++.+++++++++++|+++
T Consensus 390 is~~~~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 390 FCFIKKDSTLDAAEEIFRAW 409 (410)
T ss_dssp EECCCCHHHHHHHHHHHHTC
T ss_pred EEEcCCHHHHHHHHHHHHhc
Confidence 99988999999999999875
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=334.26 Aligned_cols=320 Identities=14% Similarity=0.052 Sum_probs=240.0
Q ss_pred CCCCeEEecCCCC---C--CCchhHhhhccccccc-ccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCc-
Q 012785 92 GGERIINVDHGDP---T--MYEKYWQKVGDKTTIV-IPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENH- 164 (456)
Q Consensus 92 ~~~~~i~l~~g~p---~--~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~- 164 (456)
..+++|||+.|.| + +++++.+.++.. .+ ..+ ....|++..| .++||++|++|+...+....+++
T Consensus 27 ~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~--~~~~~~--~~~~Y~~~~G-----~~~lr~aia~~~~~~~~~~~~~~~ 97 (405)
T 3k7y_A 27 TCEEKINLSIGVCCNDDGDLHIFDSVLNADK--LVTENY--KEKPYLLGNG-----TEDFSTLTQNLIFGNNSKYIEDKK 97 (405)
T ss_dssp SCSSCEECSCSSCBCTTSSBCCCHHHHHHHH--HHHHHC--CCCCCCTTSS-----CHHHHHHHHHHHHCSSCTTTTTTC
T ss_pred CCcCcEEeeeeeeECCCCCCcccHHHHHHHH--HhcCCC--CCCCCCCCCC-----cHHHHHHHHHHHcCCCCccccccc
Confidence 3467899999963 3 233444444322 11 111 1346999999 59999999999954433322344
Q ss_pred -eEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc-----C
Q 012785 165 -HIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK-----D 228 (456)
Q Consensus 165 -~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~-----~ 228 (456)
+|++|+|+++++.+++.++.. + | +|++++|+|+.|...++..|++++.+++ |.+.++. .
T Consensus 98 i~i~~t~G~~~al~~~~~~l~~~~~-d----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 172 (405)
T 3k7y_A 98 ICTIQCIGGTGAIFVLLEFLKMLNV-E----TLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIP 172 (405)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTTTC-C----EEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSC
T ss_pred eEEEEcCchHHHHHHHHHHHHhcCC-C----EEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCC
Confidence 469999999999999999987 8 8 9999999999999999999999987765 2333322 2
Q ss_pred CCeEEEEcCC-CCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCccccC
Q 012785 229 GPYIELVTSP-NNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVSKSTG 289 (456)
Q Consensus 229 ~~~~i~v~~P-~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~SK~~g 289 (456)
+++++++++| |||||.++++ +|++++++||+||+|.+..+.. + ....+++|+++||||+|+
T Consensus 173 ~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 252 (405)
T 3k7y_A 173 NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS 252 (405)
T ss_dssp SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSC
T ss_pred CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCC
Confidence 4567877665 9999999993 7889999999999998644321 1 133578999999999999
Q ss_pred CCCceEEEEEE--eCHHHHHHHH----HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 290 HAGTRIGWALV--KDMEVAKKMT----KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 290 ~~G~RiG~l~~--~~~~~~~~l~----~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
++|+|+||+++ +++++++++. ........+++.+.|.++..+|+.-.-.. ++.++++.+++.++++|+.
T Consensus 253 l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~-----~~~~~l~~~~~~~~~~R~~ 327 (405)
T 3k7y_A 253 LYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKL-----NWIKELSQLSQRITNNRIL 327 (405)
T ss_dssp CTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred CccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 99999999865 3577666554 33333445678899999999887210000 1356778888999999999
Q ss_pred HHHHHH----hcCC---ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE
Q 012785 364 LRMAVQ----KSGL---FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRIS 436 (456)
Q Consensus 364 l~~~L~----~~~~---~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis 436 (456)
+.+.|+ +++. +++..|+||| |+|++++. +.+.++ +++||.+.||. |||
T Consensus 328 l~~~L~~~~~~~g~~~~~~~~~p~gg~-------------f~~~~l~~--~~~~~L-~~~gV~v~p~~---------Ris 382 (405)
T 3k7y_A 328 FFNKLETYQKKYNLNYDWNVYKKQRGL-------------FSFVPLLA--KIAEHL-KTHHIYIINNG---------RIN 382 (405)
T ss_dssp HHHHHHHHGGGGTCCCCGGGGSSCCSS-------------EEECGGGG--GGTTTT-TTTTEECCTTS---------EEE
T ss_pred HHHHHHhhhhhcCCCCCCccccCCceE-------------EEecCCCH--HHHHHH-HHCCEeecCCC---------eEE
Confidence 999999 7753 6778889998 99998863 445444 89999999953 999
Q ss_pred ecC-ChhHHHHHHHHHHhhh
Q 012785 437 MLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 437 ~~~-~~e~i~~~l~~L~~~l 455 (456)
++. +++++++++++|++++
T Consensus 383 ~a~~~~~~i~~~~~~i~~~~ 402 (405)
T 3k7y_A 383 VSGITKNNVDYIADKICLSL 402 (405)
T ss_dssp GGGCCTTHHHHHHHHHHHHH
T ss_pred EeccCHHHHHHHHHHHHHHH
Confidence 986 8899999999999876
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=336.88 Aligned_cols=323 Identities=11% Similarity=0.080 Sum_probs=251.6
Q ss_pred CeEEecCCCCC---CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 95 RIINVDHGDPT---MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 95 ~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.+|||+.|+|+ ++.++.+.+......+.........|++..| .++||++||+|++. ++++|++|+|
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G-----~~~lr~~ia~~~~~------~~~~i~~t~G 101 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLG-----IADIRELWAEALGL------PADLVVAQDG 101 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSC-----CHHHHHHHHHHHTC------CGGGEEECSS
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCC-----CHHHHHHHHHHhCC------ChhHEEEecc
Confidence 47999999998 6665444443221111111112346999888 59999999999953 4579999999
Q ss_pred HHHHH--HHHHHHhcCC------------CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-----ccccc----C
Q 012785 172 STQLF--QAALYALSSQ------------DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-----KRFNK----D 228 (456)
Q Consensus 172 ~~~al--~~~~~~l~~~------------gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-----~~l~~----~ 228 (456)
+++++ .++++++..+ +| +|++++|+|+.+...++..|.+++.++.|. +.++. .
T Consensus 102 ~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~ 177 (422)
T 3d6k_A 102 SSLNIMFDLISWSYTWGNNDSSRPWSAEEKV----KWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDP 177 (422)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCSSCGGGSSCC----EEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHTST
T ss_pred hHHHHHHHHHHHHhcCcccccccccccCCCC----EEEEeCCccHHHHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhcC
Confidence 99997 7777888665 34 799999999999999999999998887643 33332 2
Q ss_pred CCeEEE-EcCCCCCCcccchH--------Hhh-hcCcEEEeeecCCC--CCC-----CCC------CCCCCCcEEEecCc
Q 012785 229 GPYIEL-VTSPNNPDGSVRQS--------VVN-RSGGILVHDLAYYW--PQY-----TSI------TYPADHDLMLFTVS 285 (456)
Q Consensus 229 ~~~~i~-v~~P~NPtG~~~~~--------l~~-~~~~~iI~De~y~~--~~~-----~~~------~~~~~~~i~i~S~S 285 (456)
++++++ +++||||||.+++. +|+ ++|+++|+||+|.+ ... .++ ....+++++++|||
T Consensus 178 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 257 (422)
T 3d6k_A 178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTS 257 (422)
T ss_dssp TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEEST
T ss_pred CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChh
Confidence 568877 78999999999882 677 89999999999974 211 122 12457899999999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|. ++||+|+||++++ +++++.+.......+++++.++|.++.++|+.. + .++++++++++.++++++.+.
T Consensus 258 K~-~~~GlriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~------~~~~~~~~~~~~~~~~~~~l~ 327 (422)
T 3d6k_A 258 KI-THAGSGVSFFASS-KENIEWYASHANVRGIGPNKLNQLAHAQFFGDV--A------GLKAHMLKHAASLAPKFERVL 327 (422)
T ss_dssp TT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH--H------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-cCcccceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc--c------hHHHHHHHHHHHHHHHHHHHH
Confidence 98 6799999999997 999999998887778899999999999988720 1 135788999999999999999
Q ss_pred HHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeec-CCCCC--C--CCCeEEE
Q 012785 366 MAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRS-GKHFG--F--SPKYVRI 435 (456)
Q Consensus 366 ~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~p-g~~fg--~--~~~~iRi 435 (456)
+.|.+. +.+.+..|.+++ |+|++++. +.+.+.+.++++||.++| |..|+ . .++++||
T Consensus 328 ~~L~~~l~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRi 394 (422)
T 3d6k_A 328 EILDSRLSEYGVAKWTSPTGGY-------------FISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRL 394 (422)
T ss_dssp HHHHHHHGGGTCEEECCCSBSS-------------CEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEE
T ss_pred HHHHHhcCcCCceEEeCCCcce-------------EEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEE
Confidence 888752 334555666666 89999975 466788899999999999 55574 1 3689999
Q ss_pred EecC-ChhHHHHHHHHHHhhh
Q 012785 436 SMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~-~~e~i~~~l~~L~~~l 455 (456)
|++. +++++++++++|++++
T Consensus 395 s~~~~~~e~i~~~~~~l~~~l 415 (422)
T 3d6k_A 395 APSLPPVAELEVAMDGFATCV 415 (422)
T ss_dssp CCSSSCHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHH
Confidence 9984 9999999999999875
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=328.79 Aligned_cols=326 Identities=18% Similarity=0.227 Sum_probs=265.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.|+|++..++.+.+... ..+..+ ...|++..| .++||++++++++. +|.... +++|++|+
T Consensus 27 ~g~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~~-----~~~l~~~la~~~~~~~g~~~~-~~~v~~~~ 96 (370)
T 2z61_A 27 EGKKVIHLEIGEPDFNTPKPIVDEGI-KSLKEG---KTHYTDSRG-----ILELREKISELYKDKYKADII-PDNIIITG 96 (370)
T ss_dssp TTCCCEECCCCSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHSSCCCC-GGGEEEES
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHH-HHHHcC---ccCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-hhhEEECC
Confidence 46678999999998765554443321 112222 235877777 59999999999975 555554 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcccccc---CCCeEEEEcCCCCCCcccch
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~ 247 (456)
|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.+++|.+.++. .+++++++++||||||.+++
T Consensus 97 g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~ 172 (370)
T 2z61_A 97 GSSLGLFFALSSIIDDGD----EVLIQNPCYPCYKNFIRFLGAKPVFCDFTVESLEEALSDKTKAIIINSPSNPLGEVID 172 (370)
T ss_dssp SHHHHHHHHHHHHCCTTC----EEEEESSCCTHHHHHHHHTTCEEEEECSSHHHHHHHCCSSEEEEEEESSCTTTCCCCC
T ss_pred ChHHHHHHHHHHhcCCCC----EEEEeCCCchhHHHHHHHcCCEEEEeCCCHHHHHHhcccCceEEEEcCCCCCcCcccC
Confidence 999999999999999999 99999999999999999999999988888777653 36788999999999999987
Q ss_pred ----HHhhhcCcEEEeeecCCCCCCC----CCCC---CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc
Q 012785 248 ----SVVNRSGGILVHDLAYYWPQYT----SITY---PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN 316 (456)
Q Consensus 248 ----~l~~~~~~~iI~De~y~~~~~~----~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~ 316 (456)
++|+++|+++|+||+|.+..+. ++.. ..+++++++||||.+|++|+|+||++++ +++++.+.......
T Consensus 173 ~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~ 251 (370)
T 2z61_A 173 REIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISN-DEIIEAILKLQQNL 251 (370)
T ss_dssp HHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEEC-HHHHHHHHHHHhhc
Confidence 4889999999999999864331 2221 3478999999999999999999999997 89999998887777
Q ss_pred cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc
Q 012785 317 TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA 396 (456)
Q Consensus 317 ~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 396 (456)
+++++++.|.++.++|+.+ + ++++++.++.++++++.+.+.|+++ ++.+..+.+++
T Consensus 252 ~~~~~~~~~~a~~~~l~~~--~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~------------- 307 (370)
T 2z61_A 252 FISAPTISQYAALKAFEKE--T--------EREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAY------------- 307 (370)
T ss_dssp TSSSCHHHHHHHGGGGSHH--H--------HHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTT-------------
T ss_pred ccCCCHHHHHHHHHHHhcc--C--------HHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcce-------------
Confidence 7899999999988888621 1 5678889999999999999999987 46666666666
Q ss_pred eEEeecCccHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 397 FAWLKCEQEIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 397 f~~~~~~~~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.+.+.+.+.|. ++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 308 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 308 YVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp EECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 889888645556666665 89999999999974 4789999998899999999999998864
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=335.77 Aligned_cols=334 Identities=16% Similarity=0.232 Sum_probs=265.3
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.+.++|+|+.|+|++++++.+.+... ..+..+. ....|++..| .+++|++++++++. +|....++++|++|+
T Consensus 26 ~~~~~i~l~~g~~~~~~~~~v~~a~~-~~~~~~~-~~~~y~~~~g-----~~~lr~~la~~~~~~~g~~~~~~~~i~~~~ 98 (422)
T 3fvs_A 26 SEHDVVNLGQGFPDFPPPDFAVEAFQ-HAVSGDF-MLNQYTKTFG-----YPPLTKILASFFGELLGQEIDPLRNVLVTV 98 (422)
T ss_dssp HTSCCEECCCSSCSSCCCHHHHHHHH-HHHHSCG-GGGSCCCTTC-----CHHHHHHHHHHHHHHHTCCCCHHHHEEEES
T ss_pred hcCCceEeCCCCCCCCCCHHHHHHHH-HHHhCCC-ccCCCCCCCC-----CHHHHHHHHHHHHHhhCCCCCCCCcEEEEC
Confidence 34578999999999887776655322 2222222 2346888778 59999999999964 666554326999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------------------ccccc---CC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------------------KRFNK---DG 229 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------------------~~l~~---~~ 229 (456)
|+++++++++++++.+|| +|+++.|+|+.+...++..|.+++.++.+. +.++. .+
T Consensus 99 g~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~ 174 (422)
T 3fvs_A 99 GGYGALFTAFQALVDEGD----EVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR 174 (422)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT
T ss_pred ChHHHHHHHHHHHcCCCC----EEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCC
Confidence 999999999999999999 999999999999999999999988776543 33332 25
Q ss_pred CeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCc
Q 012785 230 PYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~ 293 (456)
++++++++||||||.+++ ++|+++|+++|+||+|.+..+ .++. ...+++++++||||.+|++|+
T Consensus 175 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~ 254 (422)
T 3fvs_A 175 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW 254 (422)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccc
Confidence 789999999999999986 278999999999999986322 1221 234678999999999999999
Q ss_pred eEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 294 RIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 294 RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
|+||++++ +++++.+.......+++++++.|.++.++|+....... ..++++++.++.++++++.+.+.|++++
T Consensus 255 r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 328 (422)
T 3fvs_A 255 KVGWVLGP-DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFR----QPSSYFVQFPQAMQRCRDHMIRSLQSVG- 328 (422)
T ss_dssp CCEEEECC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTT----CTTCHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred eEEEEEeC-HHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhcccccc----chHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 99999997 89999998887777889999999999999873110000 1257889999999999999999999874
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCc----------------cHHHHHHHHHhCCEEeecCCCCCC------CCC
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------------EIEDCESFLKGNKILTRSGKHFGF------SPK 431 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------------~~~~~~~~l~~~gI~v~pg~~fg~------~~~ 431 (456)
+.+..|.+++ |+|++++. ..+.+..+++++||.+.||+.|+. ..+
T Consensus 329 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~ 395 (422)
T 3fvs_A 329 LKPIIPQGSY-------------FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDH 395 (422)
T ss_dssp CEEEBCSBSS-------------EEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCS
T ss_pred CeecCCCeee-------------EEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCC
Confidence 6666677776 89998753 124455567789999999999963 478
Q ss_pred eEEEEecCChhHHHHHHHHHHhhh
Q 012785 432 YVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++||+++.+++++++++++|++++
T Consensus 396 ~iRis~~~~~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 396 YIRFCFVKDEATLQAMDEKLRKWK 419 (422)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHH
Confidence 999999889999999999999876
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=329.21 Aligned_cols=327 Identities=18% Similarity=0.202 Sum_probs=261.5
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+|||+.|+|++..++.+.+... ..+... ....|++..| ..+||+++++++.. +|....+.++|++|
T Consensus 22 ~~g~~~idl~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~~-----~~~l~~~ia~~~~~~~g~~~~~~~~v~~~ 93 (376)
T 2dou_A 22 ERGVGLIDLSIGSTDLPPPEAPLKALA-EALNDP--TTYGYCLKSC-----TLPFLEEAARWYEGRYGVGLDPRREALAL 93 (376)
T ss_dssp HTTCCCEECSSCCCCCCCCHHHHHHHH-HHTTCG--GGSSCCCHHH-----HHHHHHHHHHHHHHHHSCCCCTTTSEEEE
T ss_pred ccCCCEEeccCCCCCCCCCHHHHHHHH-HHHhCC--CcCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCccEEEc
Confidence 346678999999998766655554322 112211 1345777556 48999999999954 46655433389999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccccc---CCCeEEEEcCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~N 240 (456)
+|++++++++++++.++|| +|++++|+|+.+...++..|.+++.++. |.+.++. .+++++++++|||
T Consensus 94 ~g~~~a~~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~n 169 (376)
T 2dou_A 94 IGSQEGLAHLLLALTEPED----LLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNN 169 (376)
T ss_dssp SSHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCT
T ss_pred CCcHHHHHHHHHHhcCCCC----EEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCC
Confidence 9999999999999999999 9999999999999999999999887764 4444443 2578999999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
|||.+++ ++|+++|+++|+||+|.+..+. +.. ...+++++++||||.+|++|+|+||++++ +++
T Consensus 170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~ 248 (376)
T 2dou_A 170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS-EEA 248 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC-HHH
T ss_pred CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC-HHH
Confidence 9999987 2788999999999999863221 111 22467899999999999999999999996 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+.......+++++++.|.++.++|+ +. ++++++.++.++++++.+.+.|+++ +.+..+.+++
T Consensus 249 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~-- 313 (376)
T 2dou_A 249 LARLERVKGVIDFNQYAGVLRMGVEALK---TP--------KEVVRGYARVYRERALGMAEALKGV--LSLLPPRATM-- 313 (376)
T ss_dssp HHHHHHHHHHHCCCSCHHHHHHHHHHHT---SC--------HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSS--
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHh---Cc--------HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeE--
Confidence 9999988777778899999999999887 32 5788999999999999999999886 5555566666
Q ss_pred cccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 386 FLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+.+.|.++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 314 -----------~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l~ 376 (376)
T 2dou_A 314 -----------YLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREALD 376 (376)
T ss_dssp -----------EEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC-
T ss_pred -----------EEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHhC
Confidence 89999863 356677777778999999999974 4689999998889999999999998864
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=330.81 Aligned_cols=327 Identities=15% Similarity=0.185 Sum_probs=259.3
Q ss_pred cCCCCeEEecCCCCC----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 91 DGGERIINVDHGDPT----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
..++++|+|+.|+|+ +++++.+.++.. ..+.... ...|++..| .++||++++++++..+.... +++|
T Consensus 51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~-~~~~~~~--~~~y~~~~g-----~~~lr~~la~~~~~~~~~~~-~~~v 121 (427)
T 3dyd_A 51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMK-DALDSGK--YNGYAPSIG-----FLSSREEIASYYHCPEAPLE-AKDV 121 (427)
T ss_dssp CTTSCCEECCCSCTTTTSSSCCCHHHHHHHH-HHHHHCC--SSSCCCTTC-----CHHHHHHHHHHHCBTTBCCC-GGGE
T ss_pred cCCCCEEeCCCcCCCccCCCCCCHHHHHHHH-HHHhcCc--CCCCCCCCC-----cHHHHHHHHHHHhhcCCCCC-hHHE
Confidence 345678999999986 355555544322 2222221 236877778 59999999999975555544 5799
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc---CCCeEEEE
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK---DGPYIELV 235 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~---~~~~~i~v 235 (456)
++|+|+++++++++.++.++|| +|+++.|+|+++...++..|.+++.++. |.+.++. .+++++++
T Consensus 122 ~~t~g~t~al~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i 197 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLANPGQ----NILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIV 197 (427)
T ss_dssp EEESSHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEE
T ss_pred EEecCcHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEE
Confidence 9999999999999999999999 9999999999999999999999887654 4444443 25788999
Q ss_pred cCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCC--CCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 236 TSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SIT--YPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 236 ~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ....++++++||||.|+++|+|+||+++
T Consensus 198 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~ 277 (427)
T 3dyd_A 198 NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILI 277 (427)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEE
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEe
Confidence 999999999988 2789999999999999863221 221 2234579999999999999999999999
Q ss_pred eC------HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 301 KD------MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 301 ~~------~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
++ +++++.+...... +++++++.|.++.++|+. . ..+++++.+++++++++.+.+.|++++++
T Consensus 278 ~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~---~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 346 (427)
T 3dyd_A 278 HDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCR---T-------PGEFYHNTLSFLKSNADLCYGALAAIPGL 346 (427)
T ss_dssp ECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHH---S-------CHHHHHHHHHHHHHHHHHHHHHHHHSTTE
T ss_pred cCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHh---c-------CHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 75 4688788776543 688999999999999983 1 15788899999999999999999998667
Q ss_pred cccCCCCcccccccccCCCCCceEEeecC-------ccHHHHH-HHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCE-------QEIEDCE-SFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNL 446 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~-~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~ 446 (456)
.+..|.+++ |+|++++ .+...+. .+++++||.+.||..|+. ++++||+++.+++++++
T Consensus 347 ~~~~p~~g~-------------~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-~~~iRis~~~~~e~i~~ 412 (427)
T 3dyd_A 347 RPVRPSGAM-------------YLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY-PNFIRVVITVPEVMMLE 412 (427)
T ss_dssp EEECCSBTT-------------EEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEESCSCHHHHHH
T ss_pred eecCCCeeE-------------EEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC-CCeEEEEECCCHHHHHH
Confidence 777777776 8998875 2334444 455689999999999975 78999999889999999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 413 ~l~~l~~~l 421 (427)
T 3dyd_A 413 ACSRIQEFC 421 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=327.84 Aligned_cols=327 Identities=20% Similarity=0.282 Sum_probs=261.2
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.|+|++..++.+.+... ..+... ....|++..| .++||+++++++.. +|....+.++|++|+
T Consensus 45 ~g~~~idl~~g~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~ 116 (404)
T 2o1b_A 45 GPLPLINMAVGIPDGPTPQGIIDHFQ-KALTIP--ENQKYGAFHG-----KEAFKQAIVDFYQRQYNVTLDKEDEVCILY 116 (404)
T ss_dssp CSSCCEECCCCSCSSCCCHHHHHHHH-HHTTCH--HHHSCCCTTC-----CHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred CCCCEEecCCcCCCCCCCHHHHHHHH-HHHhCC--CCCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCcccEEEcC
Confidence 34568999999998776655554322 112111 1345887667 59999999999954 466554336899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~N 240 (456)
|+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.+. +.++. .+++++++++|||
T Consensus 117 G~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~n 192 (404)
T 2o1b_A 117 GTKNGLVAVPTCVINPGD----YVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNN 192 (404)
T ss_dssp SHHHHHHHHHHHHCCTTC----EEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCT
T ss_pred CcHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCC
Confidence 999999999999999999 999999999999999999999988776543 33432 2568999999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCCCC---CCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SITYP---ADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~~~---~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
|||.+++ ++|+++|+++|+||+|.+..+. ++... .+++++++||||.+|++|+|+||++++ +++
T Consensus 193 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~ 271 (404)
T 2o1b_A 193 PTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN-KDM 271 (404)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC-HHH
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC-HHH
Confidence 9999986 2788999999999999864332 22222 256899999999999999999999996 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+.......+++++.+.|.++.++|+. + ++++++.++.++++++.+.+.|++.+ +.+..+.+++
T Consensus 272 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~-- 337 (404)
T 2o1b_A 272 IQALKKYQTHTNAGMFGALQDAAIYALNH---Y--------DDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAKGGI-- 337 (404)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCCBSS--
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHhc---C--------HHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCCcce--
Confidence 99998887777789999999999999872 2 57889999999999999999999874 6666666666
Q ss_pred cccccCCCCCceEEeecCc--cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 386 FLGRAFEPQPAFAWLKCEQ--EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~--~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +...+.+.| +++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 338 -----------~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 338 -----------YVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp -----------EEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred -----------EEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 89999863 345555554 578999999999974 4789999998888999999999998863
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=321.63 Aligned_cols=305 Identities=17% Similarity=0.179 Sum_probs=244.4
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+.+|||+.|++++++++.+ ++ . ....|++.. .++||+++|++++. ++++|++|+|++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v-------a~-~---~~~~Y~~~~------~~~lr~~la~~~~~------~~~~v~~~~G~~ 85 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVEFQL-------TQ-Q---TLNRYPECQ------PKAVIENYAQYAGV------KPEQVLVSRGAD 85 (356)
T ss_dssp TCSEECSSCCCSSCCCCCC-------CC-C---CTTSCCCSS------CHHHHHHHHHHHTS------CGGGEEEESHHH
T ss_pred CceEEeeCCCCCCCCCHhH-------hh-h---hhccCCCcc------HHHHHHHHHHHhCC------ChHHEEEcCCHH
Confidence 3679999999988876543 11 1 234688764 49999999999953 457999999999
Q ss_pred HHHHHHHHHhcCCC-CCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------CccccccC--CCeEEEEcCCCCCCcc
Q 012785 174 QLFQAALYALSSQD-ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNKD--GPYIELVTSPNNPDGS 244 (456)
Q Consensus 174 ~al~~~~~~l~~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~~--~~~~i~v~~P~NPtG~ 244 (456)
+++++++++++++| | +|+++.|+|+.+...++..|.+++.++. |.+.++.. +++++++++||||||.
T Consensus 86 ~ai~~~~~~~~~~g~d----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~v~l~~p~nptG~ 161 (356)
T 1fg7_A 86 EGIELLIRAFCEPGKD----AILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQ 161 (356)
T ss_dssp HHHHHHHHHHCCTTTC----EEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCTTEEEEEEESSCTTTCC
T ss_pred HHHHHHHHHHhCCCCC----EEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhcCCCEEEEeCCCCCCCC
Confidence 99999999999999 9 9999999999999999999999887765 33444332 6789999999999999
Q ss_pred cchH--------HhhhcCcEEEeeecCCCCC----CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH
Q 012785 245 VRQS--------VVNRSGGILVHDLAYYWPQ----YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY 312 (456)
Q Consensus 245 ~~~~--------l~~~~~~~iI~De~y~~~~----~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~ 312 (456)
+++. +|+ +|+++|+||+|.+.. ...+....+++++++||||.+|++|+|+||++++ +++++.+...
T Consensus 162 ~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~ 239 (356)
T 1fg7_A 162 LINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKV 239 (356)
T ss_dssp CCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeC-HHHHHHHHHh
Confidence 9872 455 899999999998633 1122233578999999999999999999999996 9999998877
Q ss_pred HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCC
Q 012785 313 IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392 (456)
Q Consensus 313 ~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~ 392 (456)
.. ++++++++|.++.++|+. . ..+++++.++.++++++.+.+.|++++.+....+.
T Consensus 240 ~~--~~~~~~~~~~a~~~~l~~---~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------ 295 (356)
T 1fg7_A 240 IA--PYPLSTPVADIAAQALSP---Q-------GIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS------------ 295 (356)
T ss_dssp SC--SSCSCHHHHHHHHHHTSH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC------------
T ss_pred cC--CCCCCHHHHHHHHHHhcC---c-------cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC------------
Confidence 54 568999999999998872 1 01248889999999999999999987632222233
Q ss_pred CCCceEEeecCccHHHHHHHHHhCCEEeec-CCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 393 PQPAFAWLKCEQEIEDCESFLKGNKILTRS-GKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 393 ~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p-g~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.++|+|++++ +.+.+.+.|+++||.++| |..|+. ++++||+++ +++++++++++|++++
T Consensus 296 -~~~~~~~~~~-~~~~l~~~L~~~gI~v~~~g~~~~~-~~~iRis~~-~~~e~~~~~~~l~~~~ 355 (356)
T 1fg7_A 296 -ETNYILARFK-ASSAVFKSLWDQGIILRDQNKQPSL-SGCLRITVG-TREESQRVIDALRAEQ 355 (356)
T ss_dssp -SSSEEEEEET-THHHHHHHHHHTTEECEECTTSTTC-TTEEEEECC-CHHHHHHHHHHHHTCC
T ss_pred -CCeEEEEECC-CHHHHHHHHHHCCEEEEECCCCCCC-CCeEEEEeC-CHHHHHHHHHHHHhhc
Confidence 3348999997 566677778999999999 888875 579999995 6889999999998764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=334.48 Aligned_cols=328 Identities=19% Similarity=0.212 Sum_probs=258.9
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccC--ccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPG--WQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
..++.+|||++|+|+++.++.+.+..... +..- ......|++..| .++||+++++++. +|.... +++|++
T Consensus 66 ~~~~~~i~l~~g~~~~~~~~~v~~a~~~~-~~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~~~-~g~~~~-~~~i~~ 137 (449)
T 3qgu_A 66 NPDAKIISLGIGDTTEPLPKYIADAMAKA-AAGLATREGYSGYGAEQG-----QGALREAVASTFY-GHAGRA-ADEIFI 137 (449)
T ss_dssp CTTCCCEECSSCCCCCCCCHHHHHHHHHH-HHGGGGSCCCCCSTTTTC-----CHHHHHHHHHHHH-TTTTCC-GGGEEE
T ss_pred CCCCCEEEeeCCCCCCCCCHHHHHHHHHH-HHhhccccCCCCCCCCCC-----cHHHHHHHHHHHH-cCCCCC-HHHEEE
Confidence 34678999999999998877666543221 2210 012346887777 5999999999997 666654 579999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCe----------EeeeccCcc-ccc----c-CCCeE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSR----------LYKWAGDAK-RFN----K-DGPYI 232 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~----------~~~~~~d~~-~l~----~-~~~~~ 232 (456)
|+|+++++.++ ..++.+|| +|++++|+|+.+...++..|.+ ++.++.|.+ ++. . .++++
T Consensus 138 t~G~~~al~~~-~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (449)
T 3qgu_A 138 SDGSKCDIARI-QMMFGSKP----TVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDI 212 (449)
T ss_dssp ESCHHHHHHHH-HHHHCSSS----CEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSE
T ss_pred ccCHHHHHHHH-HHHhCCCC----EEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHcCCCCE
Confidence 99999999998 88889999 9999999999999999999998 888877654 332 2 36789
Q ss_pred EEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC---CCCCCcEEEecCccccCCCCceEE
Q 012785 233 ELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT---YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~---~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
|++++||||||.+++. +|+++|+++|+||+|.+..+. ++. ...+++++++||||.+|++|+|+|
T Consensus 213 v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 292 (449)
T 3qgu_A 213 IFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLG 292 (449)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCE
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeE
Confidence 9999999999999872 688999999999999863221 221 224678999999999999999999
Q ss_pred EEEEeCHHHHH--------HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 012785 297 WALVKDMEVAK--------KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV 368 (456)
Q Consensus 297 ~l~~~~~~~~~--------~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L 368 (456)
|++++ +++++ .+.........+++++.|.++.++|.. . ..++++++++.++++++.+.+.|
T Consensus 293 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~-------~~~~~~~~~~~~~~~~~~l~~~L 361 (449)
T 3qgu_A 293 WTVVP-KALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQP---E-------GLKEMNAMIKFYKENAQILKTTF 361 (449)
T ss_dssp EEECC-TTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSH---H-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecC-HHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhh---c-------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 66654 455555556678999999999998872 1 14678899999999999999999
Q ss_pred HhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHH
Q 012785 369 QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYN 445 (456)
Q Consensus 369 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~ 445 (456)
++.+ +.+..+.+++ |+|++++. +...+. .+++++||.++||..|+. ++++|||++..++++++
T Consensus 362 ~~~g-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~ 427 (449)
T 3qgu_A 362 TEMG-FSVYGGDDAP-------------YIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENIL 427 (449)
T ss_dssp HHTT-CCEEESSSSS-------------EEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred HHCC-CeeeCCCCee-------------EEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHH
Confidence 9874 6666666666 89999863 344444 555567999999999974 57899999877999999
Q ss_pred HHHHHHHhhhC
Q 012785 446 LFVQRLSKILS 456 (456)
Q Consensus 446 ~~l~~L~~~l~ 456 (456)
+++++|+++++
T Consensus 428 ~~l~~l~~~~~ 438 (449)
T 3qgu_A 428 EAVRRFKEAYG 438 (449)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998864
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=326.45 Aligned_cols=327 Identities=19% Similarity=0.235 Sum_probs=257.3
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..+..+|||+.|+|++..++.+.+... ..+... ....|++..| ..+|++++++++.. +|....++++|++|
T Consensus 34 ~~g~~~idl~~g~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~l~~~ia~~~~~~~g~~~~~~~~v~~t 105 (412)
T 2x5d_A 34 RRGEDIIDLSMGNPDGPTPPHIVEKLC-TVAQRE--DTHGYSTSRG-----IPRLRRAISHWYRDRYDVQIDPESEAIVT 105 (412)
T ss_dssp HTTCCCEECSSCCCCSCCCHHHHHHHH-HTC-----------CTTC-----CHHHHHHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred hcCCCEEecCCCCCCCCCCHHHHHHHH-HHHhCC--CCCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCCCCcCEEEc
Confidence 356788999999998766655554322 112211 1235876677 59999999999954 46554422699999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------cccc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFNK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~~---~~~~~i~v~~P 238 (456)
+|+++++.+++++++.+|| +|++++|+|+.+...++..|.+++.++.+.+ .++. .+++++++++|
T Consensus 106 ~g~~~a~~~~~~~~~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p 181 (412)
T 2x5d_A 106 IGSKEGLAHLMLATLDHGD----TILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFP 181 (412)
T ss_dssp SCHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESS
T ss_pred CChHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCC
Confidence 9999999999999999999 9999999999999999999999988776543 2322 36789999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCCCC---CCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSITYP---ADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~~~---~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||||.+++ ++|+++|+++|+||+|.+..+ .++... .+++++++||||.+|++|+|+||++++
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~- 260 (412)
T 2x5d_A 182 SNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN- 260 (412)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC-
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcC-
Confidence 999999987 278899999999999986432 122221 467999999999999999999999996
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++.+.......+++++++.|.++.++|+ .. ++++++.++.++++++.+.+.|+++ ++.+..+.++
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 328 (412)
T 2x5d_A 261 PELVSALARIKSYHDYGTFTPLQVAAIAALE---GD--------QQCVRDIARQYQQRRDVLVKGLREA-GWMVENPKAS 328 (412)
T ss_dssp HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH---SC--------SHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBS
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHh---CC--------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCee
Confidence 9999999988777788999999999999887 33 4678999999999999999999987 4666666666
Q ss_pred ccccccccCCCCCceEEeecCc-----cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ-----EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+ |+|++++. +...+.+.| +++||.++||..|+. .++++||+++.+++++++++++|++++
T Consensus 329 ~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 395 (412)
T 2x5d_A 329 M-------------YVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMF 395 (412)
T ss_dssp S-------------EEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred e-------------EEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 6 89999853 345566655 568999999999964 478999999889999999999999875
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=328.46 Aligned_cols=325 Identities=13% Similarity=0.129 Sum_probs=264.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~ 170 (456)
.++++|||+.|+++++.++.+.++.. ..+..+ ...|++ .| .++|++++++++ .+|.... +++|++|+
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~-~~------~~lr~~la~~~~~~~~~~~~-~~~i~~t~ 88 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAIT-DAVQRE---AFGYQP-DG------SLLSQATAEFYADRYGYQAR-PEWIFPIP 88 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHH-HHHHTT---CCSSCC-SS------CCHHHHHHHHHHHHHCCCCC-GGGEEEES
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHH-HHHHcC---CCCCCC-CC------HHHHHHHHHHHHHHhCCCCC-HHHEEEeC
Confidence 46789999999999887766654322 122222 235777 65 799999999996 4565554 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC----cccccc---CCCeEEEEcCCCCCCc
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD----AKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d----~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
|++++++++++++.++|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||||||
T Consensus 89 g~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG 164 (377)
T 3fdb_A 89 DVVRGLYIAIDHFTPAQS----KVIVPTPAYPPFFHLLSATQREGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLG 164 (377)
T ss_dssp CHHHHHHHHHHHHSCTTC----CEEEEESCCTHHHHHHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTT
T ss_pred ChHHHHHHHHHHhcCCCC----EEEEcCCCcHhHHHHHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEEEEeCCCCCCC
Confidence 999999999999999999 99999999999999999999999988764 444433 3578999999999999
Q ss_pred ccchH--------HhhhcCcEEEeeecCCCCCCC------CCCC--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 244 SVRQS--------VVNRSGGILVHDLAYYWPQYT------SITY--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 244 ~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~~~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
.+++. +|+++|+++|+||+|.+..+. ++.. ..+++++++||||.+|++|+|+||++++++++++
T Consensus 165 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 244 (377)
T 3fdb_A 165 MVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAE 244 (377)
T ss_dssp BCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHH
Confidence 99872 688999999999999863222 2221 1457899999999999999999999986689999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCCCccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELPSQFCTF 386 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~g~~~~~ 386 (456)
.+.......+++++++.|.++.++|+ +. ++++++.++.++++++.+.+.|++ ++++.+..+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--- 310 (377)
T 3fdb_A 245 HWQQLSPVIKDGASTLGLIAAEAAYR---YG--------TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATY--- 310 (377)
T ss_dssp HHHHSCHHHHCCCCHHHHHHHHHHHH---HC--------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCS---
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHh---cc--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeE---
Confidence 99888776788999999999999888 22 578899999999999999999998 6667777777776
Q ss_pred ccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 387 LGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++|++++. +.+.+..+++++||.++||+.|+. .++++||+++.+++++++++++|+++++
T Consensus 311 ----------~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 311 ----------LMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVS 374 (377)
T ss_dssp ----------EEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ----------EEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 78998864 234455556667999999999975 5789999998899999999999998864
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=329.79 Aligned_cols=325 Identities=14% Similarity=0.108 Sum_probs=255.3
Q ss_pred CCCeEEecCCCCCCCchhH---hhhccc-ccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 93 GERIINVDHGDPTMYEKYW---QKVGDK-TTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~---~~~~~~-~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
...+|||+.|.|+....+. +..... ..++.........|++..| .++||++||++++. ++++|++
T Consensus 32 ~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g-----~~~lr~~ia~~~~~------~~~~i~~ 100 (427)
T 3ppl_A 32 KNLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDG-----IVDIRQIWADLLGV------PVEQVLA 100 (427)
T ss_dssp TCCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSC-----CHHHHHHHHHHHTS------CGGGEEE
T ss_pred CCceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCC-----cHHHHHHHHHHhCC------CcceEEE
Confidence 3467999999998654321 222110 2223333333457988888 59999999999953 4679999
Q ss_pred ccCHHHHH--HHHHHHhcC--C----------CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-----ccc---
Q 012785 169 GTGSTQLF--QAALYALSS--Q----------DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-----RFN--- 226 (456)
Q Consensus 169 t~G~~~al--~~~~~~l~~--~----------gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-----~l~--- 226 (456)
|+|+++++ +++++++.. + || +|++++|+|+.+...++..|.+++.++.|.+ .++
T Consensus 101 t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd----~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l 176 (427)
T 3ppl_A 101 GDASSLNIMFDVISWSYIFGNNDSVQPWSKEETV----KWICPVPGYDRHFSITERFGFEMISVPMNEDGPDMDAVEELV 176 (427)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCC----EEEEEESCCHHHHHHHHHTTCEEEEEEEETTEECHHHHHHHT
T ss_pred eCCcHHHHHHHHHHHHHhccCCcccccccCCCCC----EEEEcCCCcHHHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHH
Confidence 99999999 588888876 6 78 9999999999999999999999998876543 333
Q ss_pred -cCCCeEEEEc-CCCCCCcccchH--------Hh-hhcCcEEEeeecCCCCCCCC-------CC------CCCCCcEEEe
Q 012785 227 -KDGPYIELVT-SPNNPDGSVRQS--------VV-NRSGGILVHDLAYYWPQYTS-------IT------YPADHDLMLF 282 (456)
Q Consensus 227 -~~~~~~i~v~-~P~NPtG~~~~~--------l~-~~~~~~iI~De~y~~~~~~~-------~~------~~~~~~i~i~ 282 (456)
..++++++++ +||||||.+++. +| +++|+++|+||+|.+..+.. +. ...+++|+++
T Consensus 177 ~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (427)
T 3ppl_A 177 KNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFT 256 (427)
T ss_dssp TSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEE
T ss_pred hcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEe
Confidence 2356787754 789999999982 67 89999999999998632221 11 2467899999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
||||. +++|+|+||++++ +++++.+.......+++++.+.|.++..+|+.. + ..++++++.++.++++++
T Consensus 257 S~SK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~------~~~~~~~~~~~~~~~~~~ 326 (427)
T 3ppl_A 257 STSKI-TLAGAGVSFFLTS-AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDA--E------GVRAVMRKHAASLAPKFN 326 (427)
T ss_dssp ESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH--H------HHHHHHHHHHHHHHHHHH
T ss_pred chhhc-cCcCccEEEEEcC-HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCh--h------hHHHHHHHHHHHHHHHHH
Confidence 99999 6799999999997 999999999888788999999999999998721 1 135788899999999999
Q ss_pred HHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeec-CCCCC----CCCCe
Q 012785 363 QLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRS-GKHFG----FSPKY 432 (456)
Q Consensus 363 ~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~p-g~~fg----~~~~~ 432 (456)
.+.+.|.+. +.+.+..|.+++ |+|++++. +.+.+.+.|.++||.++| |..|+ ..+++
T Consensus 327 ~l~~~L~~~l~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~ 393 (427)
T 3ppl_A 327 KVLEILDSRLAEYGVAQWTVPAGGY-------------FISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKN 393 (427)
T ss_dssp HHHHHHHHHHGGGTCCEECCCSBSS-------------CEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCE
T ss_pred HHHHHHHHhcCCCCceEEeCCCccE-------------EEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCe
Confidence 999888652 345666676776 89999975 466788889999999999 55564 25789
Q ss_pred EEEEecC-ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+||+++. +++++++++++|++++
T Consensus 394 ~Ris~~~~~~~~i~~~~~~l~~~l 417 (427)
T 3ppl_A 394 LRLAPSLPPVEELEVAMDGVATCV 417 (427)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999987 7899999999999875
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=326.77 Aligned_cols=320 Identities=19% Similarity=0.264 Sum_probs=252.2
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCc-cccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEcc
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGW-QSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGT 170 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~ 170 (456)
++.+|||+.|+|++++++.+.+... ..+.... .....|++..| .++||+++++++. .+|.... +++|++|+
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~~y~~~~g-----~~~lr~~la~~l~~~~g~~~~-~~~i~~~~ 106 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIK-ELVTDYDSVALHGYTSAQG-----DVETRAAIAEFLNNTHGTHFN-ADNLYMTM 106 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHH-HHHHHSCHHHHHSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEES
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHH-HHHhcCCccccCCcCCCCC-----cHHHHHHHHHHHHHHhCCCCC-hHHEEEcc
Confidence 4578999999999877665554322 2222211 11346877788 5999999999995 4565554 57999999
Q ss_pred CHHHHHHHHHHHhcCCC-CCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQD-ASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~ 239 (456)
|+++++.+++++++++| | +|++++|+|+.+...++..|.+++.++.|. +.++. .+++++++++||
T Consensus 107 g~~~al~~~~~~l~~~g~d----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 182 (398)
T 3ele_A 107 GAAASLSICFRALTSDAYD----EFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPN 182 (398)
T ss_dssp SHHHHHHHHHHHHCCSTTC----EEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSC
T ss_pred CHHHHHHHHHHHHcCCCCC----EEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCC
Confidence 99999999999999999 9 999999999999999999999999887653 33332 367899999999
Q ss_pred CCCcccch--------HHhhh------cCcEEEeeecCCCCCCC-----CCCCCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 240 NPDGSVRQ--------SVVNR------SGGILVHDLAYYWPQYT-----SITYPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 240 NPtG~~~~--------~l~~~------~~~~iI~De~y~~~~~~-----~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
||||.+++ ++|++ +|+++|+||+|.+..+. ......+++++++||||.+|++|+|+||+++
T Consensus 183 nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 262 (398)
T 3ele_A 183 NPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLV 262 (398)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEE
Confidence 99999988 26777 89999999999864322 1223457899999999999999999999999
Q ss_pred eCHH------HHHHHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 301 KDME------VAKKMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 301 ~~~~------~~~~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
+ ++ +.+.+...... .+.+++.+.|.++..+++ +. . .++.++++++.+.+.|++++
T Consensus 263 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~-----~~~~~~~~~~~l~~~L~~~g- 324 (398)
T 3ele_A 263 P-DEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---AT--------G-----DINAYKENRDLLYEGLTRIG- 324 (398)
T ss_dssp C-TTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CC--------C-----CHHHHHHHHHHHHHHHHHHT-
T ss_pred c-chhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CH--------H-----HHHHHHHHHHHHHHHHHHcC-
Confidence 7 54 44455444333 357788899998887776 22 1 35678888999999998874
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHH
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLS 452 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~ 452 (456)
+.+..+.+++ |+|++++. +.+.+.+.|+++||.++||..|+. ++++||+++.++|++++++++|+
T Consensus 325 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~~~~e~i~~~l~~l~ 390 (398)
T 3ele_A 325 YHCFKPDGAF-------------YMFVKALEDDSNAFCEKAKEEDVLIVAADGFGC-PGWVRISYCVDREMIKHSMPAFE 390 (398)
T ss_dssp CCEECCSBSS-------------EEEEECSSSCHHHHHHHHHTTTEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHHH
T ss_pred CeecCCCeeE-------------EEEEEcCCCCHHHHHHHHHHCCEEEeCccccCC-CCeEEEEecCCHHHHHHHHHHHH
Confidence 5666677776 79999864 566777888999999999999975 78999999879999999999999
Q ss_pred hhh
Q 012785 453 KIL 455 (456)
Q Consensus 453 ~~l 455 (456)
+++
T Consensus 391 ~~l 393 (398)
T 3ele_A 391 KIY 393 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=322.06 Aligned_cols=325 Identities=18% Similarity=0.242 Sum_probs=261.8
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+|||+.|+|+++.++.+.+... ..+..+ ...|++..| ..+|+++++++++. +|.... +++|++|
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~l~~~la~~~~~~~g~~~~-~~~v~~~ 96 (388)
T 1j32_A 27 AEGIDVCSFSAGEPDFNTPKHIVEAAK-AALEQG---KTRYGPAAG-----EPRLREAIAQKLQRDNGLCYG-ADNILVT 96 (388)
T ss_dssp TTTCCCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEE
T ss_pred hcCCCEEECCCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHhcCCCCC-hhhEEEc
Confidence 346788999999998776655544322 112222 235888777 59999999999964 565554 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSP 238 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P 238 (456)
+|+++++.++++++..+|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++|
T Consensus 97 ~g~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 172 (388)
T 1j32_A 97 NGGKQSIFNLMLAMIEPGD----EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTP 172 (388)
T ss_dssp SHHHHHHHHHHHHHCCTTC----EEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESS
T ss_pred CCHHHHHHHHHHHhcCCCC----EEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCC
Confidence 9999999999999999999 999999999999999999999988777653 33322 35788999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCCC----CCCcEEEecCccccCCCCceEEEEEEe
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITYP----ADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~~----~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
|||||.+++ ++|+++|+++|+||+|.+..+. ++... .+++++++|+||.+|++|+|+||++++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~ 252 (388)
T 1j32_A 173 SNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGP 252 (388)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeC
Confidence 999999976 2788999999999999864322 22211 357899999999999999999999996
Q ss_pred CHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 302 DMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
+++++.+.......+++++++.|.++.++|+ .. ++++++.++.++++++.+.+.|++++++.+..+.+
T Consensus 253 -~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 320 (388)
T 1j32_A 253 -VPLVKAATKIQGHSTSNVCTFAQYGAIAAYE---NS--------QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp -HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHH---SC--------SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred -HHHHHHHHHHHhhcccCCCHHHHHHHHHHHh---CC--------cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCe
Confidence 8999999888777788999999999988887 22 56888999999999999999999886677777777
Q ss_pred cccccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++ |+|++++. +...+.+.|. ++||.++||..|+. ++++||+++.+++++++++++|++++
T Consensus 321 ~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~~i~~~~~~l~~~l 384 (388)
T 1j32_A 321 AF-------------YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA-DDCIRLSYATDLDTIKRGMERLEKFL 384 (388)
T ss_dssp TT-------------EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC-TTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eE-------------EEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC-CCcEEEEecCCHHHHHHHHHHHHHHH
Confidence 66 78888752 4556666665 58999999999975 78999999889999999999999875
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=330.39 Aligned_cols=326 Identities=17% Similarity=0.222 Sum_probs=252.5
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccc-cCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVI-PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
.++++|+|++|+|+++.++.+.++....... ........|++..| .++|++++++|+.+ +.... +++|++|+
T Consensus 54 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g-----~~~l~~~ia~~~~~-~~~~~-~~~i~~t~ 126 (432)
T 3ei9_A 54 PDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQG-----AKPLRAAIAKTFYG-GLGIG-DDDVFVSD 126 (432)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTC-----CHHHHHHHHHHHHT-TTTCC-GGGEEEES
T ss_pred CCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCC-----CHHHHHHHHHHHHc-cCCCC-cceEEECC
Confidence 4568999999999988887766543222111 11122346877777 59999999999963 44443 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCC------------eEeeeccCcc-c----ccc-CCCeE
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKS------------RLYKWAGDAK-R----FNK-DGPYI 232 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~------------~~~~~~~d~~-~----l~~-~~~~~ 232 (456)
|+++++.++ ..++.+|| +|++++|+|+++...++..|. +++.++.+.+ + ++. .++++
T Consensus 127 G~~~al~~l-~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (432)
T 3ei9_A 127 GAKCDISRL-QVMFGSNV----TIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDI 201 (432)
T ss_dssp CHHHHHHHH-HHHHCTTC----CEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSE
T ss_pred ChHHHHHHH-HHHcCCCC----EEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhhCCCCCE
Confidence 999999975 67788999 999999999999999988884 4555555432 2 222 36789
Q ss_pred EEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC----CCCC---CCCCCcEEEecCccccCCCCceEEE
Q 012785 233 ELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY----TSIT---YPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
+++++||||||.+++. +|+++|+++|+||+|.+..+ .++. ...+++|+++||||++|++|+|+||
T Consensus 202 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~ 281 (432)
T 3ei9_A 202 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGW 281 (432)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEE
Confidence 9999999999999872 68999999999999985321 1221 2346789999999999999999999
Q ss_pred EEEeCHHH--------HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 012785 298 ALVKDMEV--------AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQ 369 (456)
Q Consensus 298 l~~~~~~~--------~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 369 (456)
++++ +++ .+.+.........++++++|.++.+++.. . ..++++++++.++++++.+.+.|+
T Consensus 282 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~--------~~~~~~~~~~~~~~~~~~l~~~L~ 350 (432)
T 3ei9_A 282 TVIP-KKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP--E--------GLEAMHKVIGFYKENTNIIIDTFT 350 (432)
T ss_dssp EECC-TTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSH--H--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEC-hHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc--c--------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 565 77887776666778999999999988862 1 146788999999999999999999
Q ss_pred hcCCccccCCCCcccccccccCCCCCceEEeecCc-cH-HHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHH
Q 012785 370 KSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EI-EDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNL 446 (456)
Q Consensus 370 ~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~-~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~ 446 (456)
+.+ +.+..+.+++ |+|++++. +. +.+..+++++||.++||..|+. +++++||++..+++++++
T Consensus 351 ~~g-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~ 416 (432)
T 3ei9_A 351 SLG-YDVYGGKNAP-------------YVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILE 416 (432)
T ss_dssp HTT-CCEEECSSSS-------------EEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHH
T ss_pred HCC-ceecCCCcce-------------EEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHH
Confidence 874 5555555555 89999974 33 4455566677999999999974 578999999889999999
Q ss_pred HHHHHHhh
Q 012785 447 FVQRLSKI 454 (456)
Q Consensus 447 ~l~~L~~~ 454 (456)
++++|++-
T Consensus 417 ~l~rl~~~ 424 (432)
T 3ei9_A 417 ACRRFKQL 424 (432)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=324.90 Aligned_cols=324 Identities=14% Similarity=0.149 Sum_probs=256.3
Q ss_pred CCeEEecCCCCC---CCchhHhhhccc-ccccccCccccccc-cCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 94 ERIINVDHGDPT---MYEKYWQKVGDK-TTIVIPGWQSLSYF-SDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 94 ~~~i~l~~g~p~---~~~~~~~~~~~~-~~~~~~~~~~~~~y-~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
...|||+.|.|+ ++.++.+.++.. ...+. .......| ++..| .++||++||++++. ++++|++
T Consensus 25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~Yp~~~~g-----~~~lr~~ia~~~~~------~~~~i~~ 92 (423)
T 3ez1_A 25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGLDLRNYPGGVAG-----LPSARALFAGYLDV------KAENVLV 92 (423)
T ss_dssp TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTEETTSSCSCTTC-----CHHHHHHHHHHTTS------CGGGEEE
T ss_pred CceEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cchhhhCCCCCCCC-----hHHHHHHHHHHhCC------ChhhEEE
Confidence 467999999999 666644544332 12222 22223568 77788 59999999999853 4679999
Q ss_pred ccCHHHHHH--HHHHHhcC--C---------CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-----ccccc----
Q 012785 169 GTGSTQLFQ--AALYALSS--Q---------DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFN---- 226 (456)
Q Consensus 169 t~G~~~al~--~~~~~l~~--~---------gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~---- 226 (456)
|+|+++++. +++++++. + || +|++++|+|+.+...++..|.+++.++.| .+.++
T Consensus 93 t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~ 168 (423)
T 3ez1_A 93 WNNSSLELQGLVLTFALLHGVRGSTGPWLSQTP----KMIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAG 168 (423)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCC----EEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHHHhccCCCccccccCCCC----EEEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCHHHHHHHHh
Confidence 999999998 88888877 7 47 99999999999999999999999887764 33333
Q ss_pred -cCCCeEEEE-cCCCCCCcccchH--------Hh-hhcCcEEEeeecCCCCCCC-----C---CC------CCCCCcEEE
Q 012785 227 -KDGPYIELV-TSPNNPDGSVRQS--------VV-NRSGGILVHDLAYYWPQYT-----S---IT------YPADHDLML 281 (456)
Q Consensus 227 -~~~~~~i~v-~~P~NPtG~~~~~--------l~-~~~~~~iI~De~y~~~~~~-----~---~~------~~~~~~i~i 281 (456)
..++++|++ ++||||||.+++. +| +++|+++|+||+|.+..+. + +. ...+++|++
T Consensus 169 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 169 TDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred hCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 246778864 5899999999983 67 8999999999999842211 1 11 256789999
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
+||||. +++|+|+||++++ +++++.+.......+++++.+.|.++..+|+.+. + ..++++++.++.+++++
T Consensus 249 ~S~sK~-~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~------~~~~~~~~~~~~~~~~~ 319 (423)
T 3ez1_A 249 ASTSKI-TFAGAGLGFVASS-EDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYP-G------GLEGLMRDHAAIIAPKF 319 (423)
T ss_dssp EESTTT-SCSSSSCEEEEEC-HHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHST-T------HHHHHHHHHHHHHHHHH
T ss_pred eCchhh-ccCCcceEEEEeC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhcc-c------hHHHHHHHHHHHHHHHH
Confidence 999998 5699999999997 9999999999888889999999999999998311 2 23678889999999999
Q ss_pred HHHHHHHHh----cC-CccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeec-CCCCCC----CC
Q 012785 362 KQLRMAVQK----SG-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRS-GKHFGF----SP 430 (456)
Q Consensus 362 ~~l~~~L~~----~~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~p-g~~fg~----~~ 430 (456)
+.+.+.|.+ .+ .+.+..|.+++ |+|++++. +.+.+.+.++++||.++| |..|+. .+
T Consensus 320 ~~l~~~l~~~l~~~~~~~~~~~p~~g~-------------~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~ 386 (423)
T 3ez1_A 320 RAVDEVLRAELGEGGEYATWTLPKGGY-------------FISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHN 386 (423)
T ss_dssp HHHHHHHHHHHTTTTSSEEECCCSBSS-------------CEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSS
T ss_pred HHHHHHHHHhcCcCCCceEEeCCCccE-------------EEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCC
Confidence 998888865 23 35556666666 89999964 567888899999999999 767752 47
Q ss_pred CeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 431 KYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 431 ~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+++||+++. +++++++++++|++++
T Consensus 387 ~~iRis~~~~~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 387 RNLRLAPTRPPVEEVRTAMQVVAACI 412 (423)
T ss_dssp CEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 899999986 8999999999999876
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=322.78 Aligned_cols=324 Identities=20% Similarity=0.237 Sum_probs=259.5
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCce-EEEccC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHH-IVVGTG 171 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~-I~~t~G 171 (456)
+++|||+.|+|+++.++.+.+... ..+... ...|++..| .++||+++++++.. +|.... +++ |++|+|
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~l~~~la~~~~~~~g~~~~-~~~~v~~~~g 95 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAK-EALDKG---LTHYGPNIG-----LLELREAIAEKLKKQNGIEAD-PKTEIMVLLG 95 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-TTTSEEEESS
T ss_pred cCeEecCCCCCCCCCCHHHHHHHH-HHHhCC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCC-CCCeEEEcCC
Confidence 578999999998765554443322 112222 235887777 59999999999954 465554 467 999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P~N 240 (456)
+++++.+++++++.+|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++|||
T Consensus 96 ~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 171 (389)
T 1gd9_A 96 ANQAFLMGLSAFLKDGE----EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCN 171 (389)
T ss_dssp TTHHHHHHHTTTCCTTC----EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCT
T ss_pred hHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCC
Confidence 99999999999999999 999999999999999999999998777543 33322 2578899999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCC---CCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITY---PADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|||.+++ ++|+++|+++|+||+|.+..+. ++.. ..+++++++||||.+|++|+|+||++++ ++
T Consensus 172 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~ 250 (389)
T 1gd9_A 172 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP-SW 250 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC-HH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC-HH
Confidence 9999986 2788999999999999864332 2222 2467999999999999999999999997 99
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+++.+.......+++++++.|.++.++|+. . ..++++++.++.++++++.+.+.|++. ++.+..+.+++
T Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~- 319 (389)
T 1gd9_A 251 IIERMVKFQMYNATCPVTFIQYAAAKALKD---E------RSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAF- 319 (389)
T ss_dssp HHHHHHHHHTTTTCSCCHHHHHHHHHHHTC---H------HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTT-
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHhC---C------CcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeee-
Confidence 999998887767789999999999998872 2 012378999999999999999999987 46666666666
Q ss_pred ccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +...+.+.|. ++||.++||..|+. +++++||+++.+++++++++++|++++
T Consensus 320 ------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 320 ------------YIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 383 (389)
T ss_dssp ------------EECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ------------EEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 78988852 4566777776 89999999999974 478999999889999999999999875
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=325.63 Aligned_cols=324 Identities=15% Similarity=0.199 Sum_probs=260.8
Q ss_pred CeEEecCCCCC-CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 95 RIINVDHGDPT-MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 95 ~~i~l~~g~p~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
.+|||++|+|. ++.++.+.++.. ..+.... ...|++..| ..++++++++++.. +|....++++|++|+|+
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~-~~~~~~~--~~~y~~~~g-----~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~ 111 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFS-AGVQSGG--VQAYTEYRG-----DLGIRDLLAPRLAAFTGAPVDARDGLIITPGT 111 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHH-HHHHHTH--HHHSCCTTC-----CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHH-HHHhcCC--CCCcCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCc
Confidence 58999999987 555555554322 1122221 224777777 59999999999854 57665444799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------------Ccccccc---CCCeEEEEcC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------------DAKRFNK---DGPYIELVTS 237 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------------d~~~l~~---~~~~~i~v~~ 237 (456)
++++..++.+++.+|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++++++
T Consensus 112 ~~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 187 (407)
T 3nra_A 112 QGALFLAVAATVARGD----KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSN 187 (407)
T ss_dssp HHHHHHHHHTTCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHhCCCCC----EEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcC
Confidence 9999999999999999 9999999999999999999999988776 3344432 2678999999
Q ss_pred CCCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC----CCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 238 PNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT----YPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 238 P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
||||||.+++ ++|+++|+++|+||+|.+..+ .++. ...+++++++||||.+|++|+|+||+++
T Consensus 188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (407)
T 3nra_A 188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG 267 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc
Confidence 9999999987 278899999999999985322 2221 2356789999999999999999999999
Q ss_pred eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
+ +++++.+.......+++.+++.|.++.++|+ +. ++++++.+++++++++.+.+.|++++++.+..+.
T Consensus 268 ~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 335 (407)
T 3nra_A 268 S-RAIIARMEKLQAIVSLRAAGYSQAVLRGWFD---EA--------PGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ 335 (407)
T ss_dssp C-HHHHHHHHHHHHHHTSSSCHHHHGGGGGTTC---CC--------TTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCS
T ss_pred C-HHHHHHHHHHHhhhccCCChHHHHHHHHHHh---cc--------chHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Confidence 6 9999999998887888899999988888776 22 4678888999999999999999988667776666
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+++ |+|++++. +...+.+.| +++||.++||..|+. ..+++||+++.+++++++++++|++++
T Consensus 336 ~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~ 402 (407)
T 3nra_A 336 AGS-------------YLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 402 (407)
T ss_dssp BSS-------------EECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eeE-------------EEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 666 89998864 455666666 467999999999974 578999999889999999999999876
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=318.90 Aligned_cols=321 Identities=16% Similarity=0.240 Sum_probs=257.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc-eEEEccC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH-HIVVGTG 171 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~-~I~~t~G 171 (456)
.++|||+.|+|+++.++.+.+... ..+..+ ...|++..| .++|++++++++.. +|.... ++ +|++|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~l~~~la~~l~~~~g~~~~-~~~~v~~~~g 99 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLA-HHVAQG---ANQYAPMTG-----VQALREAIAQKTERLYGYQPD-ADSDITVTAG 99 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHSCCCC-TTTTEEEESS
T ss_pred CCeEEecCCCCCCCCCHHHHHHHH-HHHHhh---ccCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-CCCCEEEcCC
Confidence 468999999998766555544322 112221 246887777 59999999999854 565554 56 8999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-------cccccc---CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-------AKRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~NP 241 (456)
+++++.++++++..+|| +|++++|+|+.+...++..|.+++.++.| .+.++. .+++++++++||||
T Consensus 100 ~~~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~np 175 (386)
T 1u08_A 100 ATEALYAAITALVRNGD----EVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNP 175 (386)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred hHHHHHHHHHHhCCCCC----EEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCC
Confidence 99999999999999999 99999999999999999999998877654 333332 36789999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCC-----CCCCC---CCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSITY---PADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
||.+++ ++|+++|+++|+||+|.+..+ .++.. ..+++++++||||.+|++|+|+||++++ +++
T Consensus 176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~ 254 (386)
T 1u08_A 176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAP-API 254 (386)
T ss_dssp TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECC-HHH
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcC-HHH
Confidence 999986 278899999999999986322 22222 2468999999999999999999999997 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+.......+++++.+.|.++.++|+. . ++++++.++.++++++.+.+.|++.+ +.+..+.+++
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~-- 320 (386)
T 1u08_A 255 SAEIRKVHQYLTFSVNTPAQLALADMLRA---E--------PEHYLALPDFYRQKRDILVNALNESR-LEILPCEGTY-- 320 (386)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHH---C--------THHHHTHHHHHHHHHHHHHHHTTSSS-CEECCCCBSS--
T ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHhC---C--------cHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCceE--
Confidence 99998887767889999999999998873 2 46788999999999999999998874 5666666666
Q ss_pred cccccCCCCCceEEeecCc----cHHHHHHHH-HhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ----EIEDCESFL-KGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~----~~~~~~~~l-~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++. +...+.+.+ +++||.++||..|+. .++++||+++.+++++++++++|+++
T Consensus 321 -----------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 321 -----------FLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 386 (386)
T ss_dssp -----------EEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred -----------EEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhhC
Confidence 89999863 355566644 579999999998863 56899999988999999999999763
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=319.24 Aligned_cols=309 Identities=19% Similarity=0.229 Sum_probs=253.3
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+++|+|+.+++++++++.+.+.... .+ . ....|++..+ .+||++++++++. ++++|++|+|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~-~~-~---~~~~y~~~~~------~~lr~~la~~~~~------~~~~v~~~~g~~ 92 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQ-NA-N---KAHLYPDDSM------IELKSTLAQKYKV------QNENIIIGAGSD 92 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHH-HG-G---GTTSCCCTTC------HHHHHHHHHHHTC------CGGGEEEESSHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHH-HH-H---hhccCCCCCh------HHHHHHHHHHhCC------CcceEEECCCHH
Confidence 6789999999998877666543221 11 1 2346877765 8999999999863 457999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccccc---CCCeEEEEcCCCCCCcc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNK---DGPYIELVTSPNNPDGS 244 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~NPtG~ 244 (456)
+++++++.+++++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++++++||||||.
T Consensus 93 ~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~ 168 (365)
T 3get_A 93 QVIEFAIHSKLNSKN----AFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGE 168 (365)
T ss_dssp HHHHHHHHHHCCTTC----EEEECSSCCTHHHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCC
T ss_pred HHHHHHHHHHhCCCC----EEEEeCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCC
Confidence 999999999999999 9999999999999999999999988875 3444432 46799999999999999
Q ss_pred cchH-----Hhh--hcCcEEEeeecCCCCCC-------CCC---CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 245 VRQS-----VVN--RSGGILVHDLAYYWPQY-------TSI---TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 245 ~~~~-----l~~--~~~~~iI~De~y~~~~~-------~~~---~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
+++. +++ ++|+++|+||+|.+..+ .+. ....+++++++||||.+|++|+|+||++++ +++++
T Consensus 169 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~ 247 (365)
T 3get_A 169 CLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN-ANIIS 247 (365)
T ss_dssp CCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC-HHHHH
T ss_pred CcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC-HHHHH
Confidence 9872 554 57999999999983221 111 123578999999999999999999999995 99999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
.+..... .++++.+.|.++.++|+ + .+++++.+++++++++.+.+.|++++ +.+.++
T Consensus 248 ~~~~~~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-------- 304 (365)
T 3get_A 248 AFYKLRA--PFNVSNLALKAAVAAMD---D---------DEFTEKTLENNFSQMELYKEFAKKHN-IKIIDS-------- 304 (365)
T ss_dssp HHHHHSC--TTCSCHHHHHHHHHHHT---C---------HHHHHHHHHHHHHHHHHHHHHHHHTT-CEECCC--------
T ss_pred HHHHhcC--CCCcCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCC--------
Confidence 9988765 57799999999999987 2 47889999999999999999999873 444333
Q ss_pred cccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 388 GRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.++|+|++++. +.+.+.+.|.++||.++||..|+ ++++||+++ ++++++++++.|+++++
T Consensus 305 ------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~--~~~iRis~~-~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 305 ------YTNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYG--LNAIRITIG-TSYENEKFFTEFDKILR 365 (365)
T ss_dssp ------SSSEEEEECSSSCHHHHHHHHHTTTEECEECGGGT--CSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred ------CCeEEEEECCCCCHHHHHHHHHHCCEEEEECccCC--CCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 33479999976 67788888889999999999998 889999995 88999999999999874
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=321.13 Aligned_cols=333 Identities=17% Similarity=0.200 Sum_probs=249.2
Q ss_pred CCCCeEEecCCCCCCCch--hHhhhcccccccccCc--cccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceE
Q 012785 92 GGERIINVDHGDPTMYEK--YWQKVGDKTTIVIPGW--QSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~--~~~~~~~~~~~~~~~~--~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I 166 (456)
.++++|+|++|+|+..++ +.+.+... ..+.+.. .....|++..| .++||+++|+++. .+|.... +++|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~~~~~~g~~~~-~~~i 101 (417)
T 3g7q_A 29 RTPGAIMLGGGNPAHIPAMQDYFQTLLT-DMVESGKAADALCNYDGPQG-----KTALLNALAVLLRETLGWDIE-PQNI 101 (417)
T ss_dssp ---CCEECSCCCCCCCHHHHHHHHHHHH-HHHHHTHHHHHHHSTTCTTS-----HHHHHHHHHHHHHHHHCCCCC-GGGE
T ss_pred cCCCceEecCcCCCCCChHHHHHHHHHH-HHhhCCcccceeeccCCCCC-----cHHHHHHHHHHHHHHhCCCCC-cccE
Confidence 346789999999998543 22222211 1122221 12236888888 4999999999995 4666664 5799
Q ss_pred EEccCHHHHHHHHHHHhcCCCC-CCCcEEEEe-CCCCCChhhhhhhc------CCeEee-------eccCccccc-cCCC
Q 012785 167 VVGTGSTQLFQAALYALSSQDA-SEPISVVSA-APYYSSYPSITDCV------KSRLYK-------WAGDAKRFN-KDGP 230 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd-~~~~~Vlv~-~P~y~~~~~~~~~~------g~~~~~-------~~~d~~~l~-~~~~ 230 (456)
++|+|+++++++++++++.+|| ....+|+++ +|+|+.+...+... +..+.. +.+|.+.++ ..++
T Consensus 102 ~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 181 (417)
T 3g7q_A 102 ALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEET 181 (417)
T ss_dssp EEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCCCCTTE
T ss_pred EEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhccccCc
Confidence 9999999999999999998875 222268886 99999998765322 333333 235666665 2357
Q ss_pred eEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCC----CCCCC-CCCCCCcEEEecCccccCCCCceEEE
Q 012785 231 YIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWP----QYTSI-TYPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~----~~~~~-~~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
+++++++||||||.+++. +|+++|+++|+||+|..+ .+.+. +...+++++++|||| ++++|+|+||
T Consensus 182 ~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~ 260 (417)
T 3g7q_A 182 GMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGI 260 (417)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEE
T ss_pred eEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcceEE
Confidence 899999999999999882 789999999999999852 11121 234578999999999 6889999999
Q ss_pred EEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH-HHHHHHHHHHHHHHHHHh-cCC--
Q 012785 298 ALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF-TNHQMSTRWKQLRMAVQK-SGL-- 373 (456)
Q Consensus 298 l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~L~~-~~~-- 373 (456)
++++ +++++.+.......+++++++.|.++..+++ +. .+.+++.+ +++.++++++.+.+.|.+ ++.
T Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 330 (417)
T 3g7q_A 261 IIAN-DKTITAIANMNGIISLAPGGMGPAMMCEMIK---RN------DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEER 330 (417)
T ss_dssp EECC-HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHH---TT------CHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTT
T ss_pred EEeC-HHHHHHHHHhhcceeeCCCcHHHHHHHHHHc---Cc------chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 9996 9999999998888889999999999999998 33 13455555 788899999999999987 342
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCC--------CCeEEEEecCChh
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFS--------PKYVRISMLDRDE 442 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~--------~~~iRis~~~~~e 442 (456)
+.+..+.+++ |+|++++. +.+.+.+.|.++||.++||+.|+.+ ++++||+++.+++
T Consensus 331 ~~~~~~~~g~-------------~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~ 397 (417)
T 3g7q_A 331 CLIHKPEGAI-------------FLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPD 397 (417)
T ss_dssp CEEECCCBSS-------------EEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHH
T ss_pred ceeeCCCcce-------------EEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecCCHH
Confidence 5566666666 89999864 5677888889999999999999642 5799999988999
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
++++++++|++++
T Consensus 398 ~i~~~~~~l~~~l 410 (417)
T 3g7q_A 398 KIEAGVKILAEEI 410 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=318.49 Aligned_cols=321 Identities=21% Similarity=0.233 Sum_probs=257.1
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.|+|+++.++.+.+... ..+... ...|++..| ..+||++++++++. +|.... +++|++|+
T Consensus 39 ~g~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~lr~~la~~~~~~~g~~~~-~~~v~~~~ 108 (389)
T 1o4s_A 39 KGEDVINLTAGEPDFPTPEPVVEEAV-RFLQKG---EVKYTDPRG-----IYELREGIAKRIGERYKKDIS-PDQVVVTN 108 (389)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHH-HHHTTC---CCCCCCTTC-----CHHHHHHHHHHHHHHHTCCCC-GGGEEEES
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-HHHEEEec
Confidence 46788999999998766555544322 122222 235877777 59999999999964 465544 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~P~ 239 (456)
|+++++.+++++++.+|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++||
T Consensus 109 g~t~al~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 184 (389)
T 1o4s_A 109 GAKQALFNAFMALLDPGD----EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPN 184 (389)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSC
T ss_pred CHHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCC
Confidence 999999999999999999 999999999999999999999998777653 33332 257889999999
Q ss_pred CCCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCC--C-CCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 240 NPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SIT--Y-PADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 240 NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~--~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
||||.+++ ++|+++|+++|+||+|.+..+. ++. . ..+++++++||||.+|++|+|+||++++ ++
T Consensus 185 nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~-~~ 263 (389)
T 1o4s_A 185 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS-EK 263 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC-HH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeC-HH
Confidence 99999976 2788999999999999864332 111 1 2578999999999999999999999996 89
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+++.+.......+++++++.|.++.++|+ ++ +++.++.++++++.+.+.|+++ ++.+..+.+++
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~-----------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~- 327 (389)
T 1o4s_A 264 VATAVSKIQSHTTSCINTVAQYAALKALE---VD-----------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAF- 327 (389)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHTT---CC-----------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSS-
T ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHh---cc-----------HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcce-
Confidence 99999888776778899999999988886 21 5677888999999999999987 46666666666
Q ss_pred ccccccCCCCCceEEeecCccHHHHHHHHH-hCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 385 TFLGRAFEPQPAFAWLKCEQEIEDCESFLK-GNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~-~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.+.+.+.+.|. ++||.++||..|+. ++++||+++.+++++++++++|+++++
T Consensus 328 ------------~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-~~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 328 ------------YLFFKVRGDDVKFCERLLEEKKVALVPGSAFLK-PGFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp ------------EEEEECSSCHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ------------EEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCC-CCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 789888634556666665 89999999999975 579999998899999999999998764
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=313.44 Aligned_cols=311 Identities=19% Similarity=0.232 Sum_probs=252.3
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
.+++|||+.|+|++++++.+.+... .......+|++. | ..+||++++++++. ++++|++|+|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~-----~~~~~~~~y~~~-~-----~~~lr~~la~~~~~------~~~~v~~~~g~ 93 (363)
T 3ffh_A 31 LTKITKLSSNENPLGTSKKVAAIQA-----NSSVETEIYPDG-W-----ASSLRKEVADFYQL------EEEELIFTAGV 93 (363)
T ss_dssp CSCCEECSSCSCTTCCCHHHHHHHH-----TCBSCCCBC----------CHHHHHHHHHHHTC------CGGGEEEESSH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHH-----HHHHHhhcCCCc-c-----hHHHHHHHHHHhCC------ChhhEEEeCCH
Confidence 4578999999999887766654322 111223457654 5 59999999999963 45799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---CCCeEEEEcCCCCCCc
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
+++++++++++.++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||||||
T Consensus 94 t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG 169 (363)
T 3ffh_A 94 DELIELLTRVLLDTTT----NTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTG 169 (363)
T ss_dssp HHHHHHHHHHHCSTTC----EEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred HHHHHHHHHHHccCCC----EEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcC
Confidence 9999999999999999 99999999999999999999999887764 344432 3678999999999999
Q ss_pred ccchH-----Hhhhc--CcEEEeeecCCCCCC---CC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHH
Q 012785 244 SVRQS-----VVNRS--GGILVHDLAYYWPQY---TS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT 310 (456)
Q Consensus 244 ~~~~~-----l~~~~--~~~iI~De~y~~~~~---~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~ 310 (456)
.+++. +++.. |+++|+||+|.+..+ .+ .....+++++++||||.+|++|+|+||++++ +++++.+.
T Consensus 170 ~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~ 248 (363)
T 3ffh_A 170 NYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD-KEIIRQLN 248 (363)
T ss_dssp CCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC-HHHHHHHH
T ss_pred CCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC-HHHHHHHH
Confidence 99882 55555 999999999984322 11 1234678999999999999999999999995 99999998
Q ss_pred HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccccc
Q 012785 311 KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 311 ~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~ 390 (456)
.... +++++.+.|.++.++|+ + .+++++.+++++++++.+.+.|+++.++.+.++
T Consensus 249 ~~~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~----------- 303 (363)
T 3ffh_A 249 IVRP--PFNTTSIGQKLAIEAIK---D---------QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPA----------- 303 (363)
T ss_dssp HTCC--SCCCBHHHHHHHHHHHH---C---------HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC-----------
T ss_pred HhCC--CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCC-----------
Confidence 8765 78899999999999997 2 468889999999999999999998544544433
Q ss_pred CCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 391 FEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.++|+|++++.+.+.+.+.|.++||.++||..|+. ++++||+++ +++++++++++|++++
T Consensus 304 ---~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 304 ---NGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGF-PTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp ---CSSEEEEECSSCHHHHHHHHHHTTEECEETTTTTC-TTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred ---CCeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCC-CCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 33489999976677788888899999999999986 889999996 8899999999999874
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=317.17 Aligned_cols=324 Identities=13% Similarity=0.112 Sum_probs=262.6
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++++|||+.|+|+++.++.+.+... ..+... ...|++.. .++++++++++.. +|.... +++|++|+
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~-------~~l~~~la~~l~~~~g~~~~-~~~i~~~~ 92 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASME-EKLKVA---AFGYESVP-------AEYYKAVADWEEIEHRARPK-EDWCVFAS 92 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHH-HHHTTC---CCCCBCCC-------HHHHHHHHHHHHHHHSCCCC-GGGEEEES
T ss_pred cCCCceeccccCCCCCCCHHHHHHHH-HHHhcC---cCCCCCCC-------HHHHHHHHHHHHHHhCCCCC-HHHEEECC
Confidence 45689999999999988776665422 122222 23466643 8999999999954 565554 57999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc---------Ccccccc----CCCeEEEEcC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---------DAKRFNK----DGPYIELVTS 237 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~---------d~~~l~~----~~~~~i~v~~ 237 (456)
|++++++++++++.++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .++++|++++
T Consensus 93 g~~~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 93 GVVPAISAMVRQFTSPGD----QILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp CHHHHHHHHHHHHSCTTC----EEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CHHHHHHHHHHHhCCCCC----eEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 999999999999999999 9999999999999999999999887665 3333332 4678999999
Q ss_pred CCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCC----CCCCcEEEecCccccCCCCceEEEEEE
Q 012785 238 PNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITY----PADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 238 P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~----~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
||||||.+++ ++|+++|+++|+||+|.+..+. ++.. ..+++++++|+||.+|++|+|+||+++
T Consensus 169 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~ 248 (391)
T 3dzz_A 169 PHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAII 248 (391)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEEC
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEE
Confidence 9999999976 2789999999999999853222 2211 146789999999999999999999999
Q ss_pred eCHHHHHHHHHHHh-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccC
Q 012785 301 KDMEVAKKMTKYIE-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPE 378 (456)
Q Consensus 301 ~~~~~~~~l~~~~~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~ 378 (456)
+++++++.+..... ...++++++.|.++.++|+. . ++++++.++.++++++.+.+.|++ ++++.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 317 (391)
T 3dzz_A 249 PNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEE---G--------HDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD 317 (391)
T ss_dssp CSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred CCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc---c--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 76899999988754 34568899999999998873 2 578899999999999999999998 67777777
Q ss_pred CCCcccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHh
Q 012785 379 LPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
+.+++ ++|++++. +.+.+.+.| +++||.++||..|+. +++++||+++.+++++++++++|++
T Consensus 318 ~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 318 SNASY-------------LAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQ 384 (391)
T ss_dssp CCBSS-------------EEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHH
T ss_pred cCceE-------------EEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 77776 78898863 566677777 589999999999975 4689999998899999999999998
Q ss_pred hh
Q 012785 454 IL 455 (456)
Q Consensus 454 ~l 455 (456)
++
T Consensus 385 ~l 386 (391)
T 3dzz_A 385 GV 386 (391)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=320.74 Aligned_cols=331 Identities=14% Similarity=0.188 Sum_probs=260.6
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc-eEEEccC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH-HIVVGTG 171 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~-~I~~t~G 171 (456)
.++|||+.|.|+++.++.+.+... ..+.........|++..| .++|++++++++.. +|.... ++ +|++|+|
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~g-----~~~l~~~la~~l~~~~g~~~~-~~~~v~~~~g 109 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALA-AAANSPDPLANQYTRGFG-----HPRLVQALSKLYSQLVDRTIN-PMTEVLVTVG 109 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHH-HHHTCSCGGGGSCCCSSC-----CHHHHHHHHHHHHHHHTSCCC-TTTSEEEESH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHH-HHHhccccCccCCCCCCC-----cHHHHHHHHHHHHHHhCCCCC-CcCCEEEecC
Confidence 468999999998766655554322 112221112346887777 59999999999854 465543 56 8999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc----------------ccccc---CCCeE
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA----------------KRFNK---DGPYI 232 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~----------------~~l~~---~~~~~ 232 (456)
+++++.+++++++.+|| +|+++.|+|+.+...++..|.+++.++.+. +.++. .++++
T Consensus 110 ~~~a~~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (429)
T 1yiz_A 110 AYEALYATIQGHVDEGD----EVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKM 185 (429)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEE
T ss_pred hHHHHHHHHHHhcCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceE
Confidence 99999999999999999 999999999999999999999988776543 33322 36789
Q ss_pred EEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCC---CCCCCcEEEecCccccCCCCceEE
Q 012785 233 ELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSIT---YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~---~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
+++++||||||.+++ ++|+++|+++|+||+|.+..+ .++. ...+++++++||||.+|++|+|+|
T Consensus 186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G 265 (429)
T 1yiz_A 186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIG 265 (429)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCE
T ss_pred EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceE
Confidence 999999999999986 278999999999999986322 2222 134679999999999999999999
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhC--CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSD--SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
|++++ +++++.+.......+++++++.|.++.++|+.... + ..++++++.++.++++++.+.+.|++++ +
T Consensus 266 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 337 (429)
T 1yiz_A 266 WAYGP-EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLK------SPECYFNSISGELMAKRDYMASFLAEVG-M 337 (429)
T ss_dssp EEESC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTT------STTSHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred EEEeC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHhccccccc------chHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 99997 99999998887777889999999999999984100 2 1256889999999999999999999874 5
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc--------------cHHHHHHHH-HhCCEEeecCCCCCC------CCCeE
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------------EIEDCESFL-KGNKILTRSGKHFGF------SPKYV 433 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------------~~~~~~~~l-~~~gI~v~pg~~fg~------~~~~i 433 (456)
.+..+.+++ |+|++++. +...+.+.| +++||.++||..|+. .++++
T Consensus 338 ~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~i 404 (429)
T 1yiz_A 338 NPTVPQGGY-------------FMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV 404 (429)
T ss_dssp EEEECSBSS-------------EEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEE
T ss_pred cccCCCcce-------------EEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeE
Confidence 665666666 89998863 234555555 589999999998863 26899
Q ss_pred EEEecCChhHHHHHHHHHHhhhC
Q 012785 434 RISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 434 Ris~~~~~e~i~~~l~~L~~~l~ 456 (456)
||+++.+++++++++++|+++++
T Consensus 405 Ris~~~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 405 RYCFFKKDENLQKAAEILRKWKG 427 (429)
T ss_dssp EEECCSCHHHHHHHHHHHHHHSC
T ss_pred EEEecCCHHHHHHHHHHHHHhcc
Confidence 99998899999999999998864
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=314.65 Aligned_cols=311 Identities=17% Similarity=0.221 Sum_probs=243.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.++|++++++.+.+... ..+ .....|+++.+ ++||+++|++++. ++++|++|+|
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~-~~~----~~~~~y~~~~~------~~lr~~la~~~~~------~~~~i~~t~g 75 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLV-ENL----NCIRHYPEPDA------GTLRQMLAKRNSV------DNNAILVTNG 75 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHH-HTG----GGGGSCCCTTC------HHHHHHHHHHTTC------CGGGEEEESH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHH-HhH----hHHhcCCCCcH------HHHHHHHHHHhCc------CHHHEEEcCC
Confidence 34688999999998887766654322 112 22346887775 8999999999853 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Cc-cccccCCCeEEEEcCCCCCCcccchH-
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DA-KRFNKDGPYIELVTSPNNPDGSVRQS- 248 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~-~~l~~~~~~~i~v~~P~NPtG~~~~~- 248 (456)
++++++++++++. || +|+++.|+|+.+...++..|++++.++. |. +++...+++++++++||||||.+++.
T Consensus 76 ~~~al~~~~~~l~--gd----~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~v~i~~p~nptG~~~~~~ 149 (350)
T 3fkd_A 76 PTAAFYQIAQAFR--GS----RSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADFSNMDFCWLCNPNNPDGRLLQRT 149 (350)
T ss_dssp HHHHHHHHHHHTT--TC----EEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCCTTCSEEEEESSCTTTCCCCCHH
T ss_pred HHHHHHHHHHHHC--CC----EEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCccCCCCEEEEeCCCCCcCCCCCHH
Confidence 9999999999987 88 9999999999999999999999999988 65 56666678999999999999999883
Q ss_pred ----HhhhcC-cEEEeeecCCCCCCCC-----CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC
Q 012785 249 ----VVNRSG-GILVHDLAYYWPQYTS-----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI 318 (456)
Q Consensus 249 ----l~~~~~-~~iI~De~y~~~~~~~-----~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~ 318 (456)
+++..+ .++|+||+|.+..+.+ .....+++++++||||.+|++|+|+||++++ +++++.+..... ++
T Consensus 150 ~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~--~~ 226 (350)
T 3fkd_A 150 EILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN-KDFMKRVAAFST--PW 226 (350)
T ss_dssp HHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECC-HHHHHHHHTTCC--TT
T ss_pred HHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeC-HHHHHHHHHhCC--CC
Confidence 565543 5999999998643322 1134578999999999999999999999995 999999987764 67
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceE
Q 012785 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 319 ~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
+++++.|.++.++|+ +. +++.++.++.. ++++.+.+.|++++++.+.++ .++|+
T Consensus 227 ~~~~~~~~~~~~~l~---~~--------~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~--------------~~~~~ 280 (350)
T 3fkd_A 227 AVNALAIEAAKFILI---HP--------AQFTLPIRKWQ-RNTVDFITALNRLDGVEVHPS--------------GTTFF 280 (350)
T ss_dssp CSCHHHHHHHHHHHH---CT--------TTTCCCHHHHH-HHHHHHHHHHHHSTTEEECCC--------------SSSEE
T ss_pred CCCHHHHHHHHHHHh---CH--------HHHHHHHHHHH-HHHHHHHHHHhcCCCcEECCC--------------CCcEE
Confidence 899999999999998 32 12333344444 888899999988765555433 33478
Q ss_pred EeecCc-cHHHHHHHHHh-CCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 399 WLKCEQ-EIEDCESFLKG-NKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 399 ~~~~~~-~~~~~~~~l~~-~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++++. +.+.+.+.|.+ +||.++||+.|+. .++++||+++ ++++++++++.|++++
T Consensus 281 ~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 281 LLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFL 339 (350)
T ss_dssp EEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 888865 56677777777 9999999999964 5789999995 7778888888888775
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=314.34 Aligned_cols=324 Identities=15% Similarity=0.242 Sum_probs=259.4
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++.+|+|+.|+|+++.++.+.+.. ..+..+ ...|++..| ..+|+++++++++. +|.... +++|++|
T Consensus 40 ~~g~~~i~l~~~~~~~~~~~~v~~a~--~~l~~~---~~~y~~~~g-----~~~l~~~la~~~~~~~g~~~~-~~~v~~~ 108 (409)
T 2gb3_A 40 KRGVRIHHLNIGQPDLKTPEVFFERI--YENKPE---VVYYSHSAG-----IWELREAFASYYKRRQRVDVK-PENVLVT 108 (409)
T ss_dssp HTTCEEEECSSCCCCSCCCTHHHHHH--HHTCCS---SCCCCCTTC-----CHHHHHHHHHHHHHTSCCCCC-GGGEEEE
T ss_pred hcCCCEEeccCCCCCCCCCHHHHHHH--HHHhcC---CCCCCCCCC-----cHHHHHHHHHHHHHHhCCCCC-HHHEEEe
Confidence 35678999999999876655554432 222222 235877777 59999999999975 455544 5799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPN 239 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~ 239 (456)
+|+++++.++++++.++|| +|++++|+|+.+...++..|.+++.++.+. +.++. .+++++++++||
T Consensus 109 ~g~t~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p~ 184 (409)
T 2gb3_A 109 NGGSEAILFSFAVIANPGD----EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPC 184 (409)
T ss_dssp SHHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSC
T ss_pred CCHHHHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCCC
Confidence 9999999999999999999 999999999999999999999998887653 33332 257889999999
Q ss_pred CCCcccch--------HHhhhcCcEEEeeecCCCCCC----CC-CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 240 NPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY----TS-ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 240 NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~----~~-~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
||||.+++ ++|+++|+++|+||+|.+..+ .+ +....+++++++||||.+|++|+|+||+++++++++
T Consensus 185 nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~ 264 (409)
T 2gb3_A 185 NPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELI 264 (409)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHH
Confidence 99999976 278899999999999986432 12 222246799999999999999999999999843899
Q ss_pred HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCCcccc
Q 012785 307 KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PELPSQFCT 385 (456)
Q Consensus 307 ~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~g~~~~ 385 (456)
+.+.......+ +++++.|.++.++|+ .+ ++++++.++.++++++.+.+.|++. ++.+ ..+.+++
T Consensus 265 ~~l~~~~~~~~-~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-- 329 (409)
T 2gb3_A 265 SHAMKLAQGRL-APPLLEQIGSVGLLN---LD--------DSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAF-- 329 (409)
T ss_dssp HHHHHHHHHSC-CCCHHHHHHHHHHHT---CC--------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSS--
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHh---cc--------HHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeE--
Confidence 99988776555 899999999999886 22 5788899999999999999999987 4555 5566666
Q ss_pred cccccCCCCCceEEeecC-ccHHHHHHHHHhC------CEEeecCCCCCC----CCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 386 FLGRAFEPQPAFAWLKCE-QEIEDCESFLKGN------KILTRSGKHFGF----SPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~------gI~v~pg~~fg~----~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+|++++ .+...+.+.|.++ ||.++||..|+. +++++||+++.+++++++++++|+++
T Consensus 330 -----------~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~ 398 (409)
T 2gb3_A 330 -----------YITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEG 398 (409)
T ss_dssp -----------EEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHH
T ss_pred -----------EEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHH
Confidence 8898885 3456666666655 999999999964 37899999988899999999999987
Q ss_pred h
Q 012785 455 L 455 (456)
Q Consensus 455 l 455 (456)
+
T Consensus 399 l 399 (409)
T 2gb3_A 399 L 399 (409)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=319.48 Aligned_cols=324 Identities=15% Similarity=0.218 Sum_probs=258.1
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc-eEEEcc
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH-HIVVGT 170 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~-~I~~t~ 170 (456)
..+.|||+.|+|+++.++.+.+... ..+..+ ...|++..| .++|++++++++.. +|.... ++ +|++|+
T Consensus 24 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~g-----~~~l~~~la~~~~~~~g~~~~-~~~~v~~t~ 93 (411)
T 2o0r_A 24 RIGAVNLGQGFPDEDGPPKMLQAAQ-DAIAGG---VNQYPPGPG-----SAPLRRAIAAQRRRHFGVDYD-PETEVLVTV 93 (411)
T ss_dssp TTTCEESSCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-TTTSEEEEE
T ss_pred cCCeeeccCcCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHHcCCCCC-CCceEEEeC
Confidence 3468999999998766555544322 122221 346888777 59999999999964 465554 45 899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc---CCCeEEEEcCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK---DGPYIELVTSP 238 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~---~~~~~i~v~~P 238 (456)
|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .++++|++++|
T Consensus 94 g~~~al~~~~~~~~~~gd----~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~ 169 (411)
T 2o0r_A 94 GATEAIAAAVLGLVEPGS----EVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSP 169 (411)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESS
T ss_pred CHHHHHHHHHHHhcCCCC----EEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCC
Confidence 999999999999999999 99999999999999999999998876643 334432 36789999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCC---CCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITY---PADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||||.+++ ++|+++|+++|+||+|.+..+. ++.. ..+++++++||||.+|++|+|+||++++
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~- 248 (411)
T 2o0r_A 170 HNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP- 248 (411)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC-
Confidence 999999986 2788999999999999864321 2211 2467999999999999999999999996
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++.+.......+++.+++.|.++.++|+. . ++++++.++.++++++.+.+.|++. ++.+..+.++
T Consensus 249 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 316 (411)
T 2o0r_A 249 AELIAGVRAAKQYLSYVGGAPFQPAVALALDT---E--------DAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGT 316 (411)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBS
T ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---C--------hHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCee
Confidence 99999998887767788899999999998872 2 5688899999999999999999887 3666666666
Q ss_pred ccccccccCCCCCceEEeecCc----cHHHHHHHH-HhCCEEeecCCCC-CC-----------CCCeEEEEecCChhHHH
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFL-KGNKILTRSGKHF-GF-----------SPKYVRISMLDRDENYN 445 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l-~~~gI~v~pg~~f-g~-----------~~~~iRis~~~~~e~i~ 445 (456)
+ |+|++++. +...+.+.| +++||.++||..| +. .++++||+++.++++++
T Consensus 317 ~-------------~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~ 383 (411)
T 2o0r_A 317 Y-------------FLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLD 383 (411)
T ss_dssp S-------------EEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHH
T ss_pred E-------------EEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHH
Confidence 6 89999863 345555544 5789999999988 32 35789999987899999
Q ss_pred HHHHHHHhhhC
Q 012785 446 LFVQRLSKILS 456 (456)
Q Consensus 446 ~~l~~L~~~l~ 456 (456)
+++++|+++++
T Consensus 384 ~~~~~l~~~~~ 394 (411)
T 2o0r_A 384 EAIRRLSVLAE 394 (411)
T ss_dssp HHHHHHGGGGC
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=309.27 Aligned_cols=315 Identities=17% Similarity=0.195 Sum_probs=253.4
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.++|++++++.+.+... ..+..+......|++.. ..+||++++++++. ++++|++|+|
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~------~~~lr~~la~~~g~------~~~~i~~t~g 90 (360)
T 3hdo_A 24 DIASWIKLNTNENPYPPSPEVVKAIL-EELGPDGAALRIYPSAS------SQKLREVAGELYGF------DPSWIIMANG 90 (360)
T ss_dssp CCTTSEECSSCCCSSCCCHHHHHHHH-HHHTTTCGGGGSCCCSS------CHHHHHHHHHHHTC------CGGGEEEESS
T ss_pred cccceeeccCCCCCCCCCHHHHHHHH-HHHhcccchhhcCCCCc------hHHHHHHHHHHhCc------CcceEEEcCC
Confidence 34678999999999988776665422 22222211134577654 49999999999962 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc----cccc-CCCeEEEEcCCCCCCcccc
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK----RFNK-DGPYIELVTSPNNPDGSVR 246 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~----~l~~-~~~~~i~v~~P~NPtG~~~ 246 (456)
+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.|.+ .+.. .+++++++++||||||.++
T Consensus 91 ~~~al~~~~~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~ 166 (360)
T 3hdo_A 91 SDEVLNNLIRAFAAEGE----EIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSF 166 (360)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHHhCCCC----EEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCc
Confidence 99999999999999999 9999999999999999999999998876543 2222 2567999999999999998
Q ss_pred h-----HHhhhcCcEEEeeecCCCCCCCC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC
Q 012785 247 Q-----SVVNRSGGILVHDLAYYWPQYTS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI 318 (456)
Q Consensus 247 ~-----~l~~~~~~~iI~De~y~~~~~~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~ 318 (456)
+ ++|+++|+++|+||+|.+....+ .....+++++++||||.+|++|+|+||++++ +++++.+..... .+
T Consensus 167 ~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~--~~ 243 (360)
T 3hdo_A 167 PLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIAR-PEVIAALDKIRD--HY 243 (360)
T ss_dssp CHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECC-HHHHHHHHHHSC--SC
T ss_pred CHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeC-HHHHHHHHHhCC--CC
Confidence 8 38999999999999998532111 1133578899999999999999999999995 999999988764 57
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceE
Q 012785 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 319 ~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
+++++.|.++.++|+. .+++++.++.++++++.+.+.|++++ +.+.++ .++|+
T Consensus 244 ~~~~~~~~a~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~--------------~~~~~ 296 (360)
T 3hdo_A 244 NLDRLAQAACVAALRD------------QAYLSECCRRIRETREWFTTELRSIG-YDVIPS--------------QGNYL 296 (360)
T ss_dssp CSCHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHHHHTT-CEECCC--------------SSSEE
T ss_pred CCCHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHHHHHHHHCC-CEEcCC--------------CccEE
Confidence 8999999999999982 46788999999999999999999873 444333 33478
Q ss_pred EeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 399 WLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 399 ~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++++. +.+.+.+.|.++||.++||..++ .++++||+++ ++++++++++.|+++.
T Consensus 297 ~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~-~~~~iRis~~-~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 297 FATPPDRDGKRVYDGLYARKVLVRHFSDPL-LAHGMRISIG-TREEMEQTLAALKEIG 352 (360)
T ss_dssp EEECTTCCHHHHHHHHHHTTEECBCCCSTT-TTTSEEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHCCEEEEECCCCC-CCCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 888864 56778888999999999987633 4689999995 8899999999999874
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=311.37 Aligned_cols=324 Identities=12% Similarity=0.140 Sum_probs=259.9
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
+.++|+|+.|+|+++.++.+.++.. ..+... ...|++ + ..++++++++++.. +|.... +++|++|+|
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~--~-----~~~~~~~l~~~l~~~~g~~~~-~~~v~~~~g 98 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLK-NRLEQE---IYGYTT--R-----PDSYNESIVNWLYRRHNWKIK-SEWLIYSPG 98 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHH-HHHTTC---CCCCBC--C-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEESC
T ss_pred CCCceeccccCCCCCCCHHHHHHHH-HHHhCC---CCCCCC--C-----CHHHHHHHHHHHHHHhCCCCc-HHHeEEcCC
Confidence 4688999999999887776665322 122222 224555 3 38999999999854 565443 579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC----------cccccc--CCCeEEEEcCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD----------AKRFNK--DGPYIELVTSPN 239 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d----------~~~l~~--~~~~~i~v~~P~ 239 (456)
+++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||
T Consensus 99 ~~~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~~p~ 174 (391)
T 4dq6_A 99 VIPAISLLINELTKAND----KIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKDVKLFILCNPH 174 (391)
T ss_dssp HHHHHHHHHHHHSCTTC----EEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEESSB
T ss_pred hHHHHHHHHHHhCCCCC----EEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEECCC
Confidence 99999999999999999 99999999999999999999999877654 333322 127899999999
Q ss_pred CCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCCCC----CCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 240 NPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SITYP----ADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 240 NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~~~----~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||||.+++. +|+++|+++|+||+|.+..+. ++... .+++++++||||.+|++|+|+||+++++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 254 (391)
T 4dq6_A 175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPD 254 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCS
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCC
Confidence 999999772 789999999999999863322 22211 2578999999999999999999999986
Q ss_pred HHHHHHHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCC
Q 012785 303 MEVAKKMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~ 380 (456)
+++++.+...... ...+++++.|.++.++|+. . ++++++.++.++++++.+.+.|++ ++++.+..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (391)
T 4dq6_A 255 EKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN---G--------ESWLESFLEYLESNIDFAIKYINENMPKLKVRKPE 323 (391)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCS
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc---h--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCC
Confidence 6899998887543 3457899999999998872 2 577899999999999999999988 5677777777
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHHhC-CEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGN-KILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~-gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+++ ++|++++. +.+.+.+.|.++ ||.++||+.|+. .++++||+++.+++++++++++|++++
T Consensus 324 ~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 324 GTY-------------LLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp BSS-------------EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ccE-------------EEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 777 78898863 566777777776 999999999975 578999999889999999999999987
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 391 ~ 391 (391)
T 4dq6_A 391 N 391 (391)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=322.58 Aligned_cols=328 Identities=16% Similarity=0.176 Sum_probs=255.9
Q ss_pred CCCeEEecCCCCCCC--chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHh-cCc-cCCCceEEE
Q 012785 93 GERIINVDHGDPTMY--EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-GNA-ITENHHIVV 168 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-g~~-~~~~~~I~~ 168 (456)
++.+|||+.|.|+.. +++.+.+... ..+.........|++..| .++||+++++++... |.. .. +++|++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~g-----~~~lr~~la~~l~~~~g~~~~~-~~~v~~ 114 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAK-EIIEKEYHYTLQYSTTEG-----DPVLKQQILKLLERMYGITGLD-EDNLIF 114 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHH-HHHHHSHHHHTSCCCTTC-----CHHHHHHHHHHHHHHHCCCSCC-GGGEEE
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHH-HHHhhcchhhcCCCCCCC-----CHHHHHHHHHHHHhccCCCCCC-cccEEE
Confidence 457899999987642 3333333211 112221111245777777 599999999999654 654 43 579999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-----Ccccccc-----------CCCeE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-----DAKRFNK-----------DGPYI 232 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-----d~~~l~~-----------~~~~~ 232 (456)
|+|+++++++++++++++|| +|++++|+|+.+...++..|.+++.++. |.+.++. .++++
T Consensus 115 t~G~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~ 190 (425)
T 1vp4_A 115 TVGSQQALDLIGKLFLDDES----YCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKF 190 (425)
T ss_dssp EEHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eccHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceE
Confidence 99999999999999999999 9999999999999999999999988775 3343431 15678
Q ss_pred E-EEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCC--CCCCCcEEEecCccccCCCCceEE
Q 012785 233 E-LVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SIT--YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 233 i-~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~--~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
| ++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++++++||||.+| +|+|+|
T Consensus 191 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G 269 (425)
T 1vp4_A 191 IYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIG 269 (425)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEE
T ss_pred EEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceE
Confidence 7 57999999999987 2788999999999999864332 111 22467999999999999 999999
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C---
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G--- 372 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~--- 372 (456)
|++++ +++++.+.......+++++++.|.++.++|+. . ..++++++.++.++++++.+.+.|++. +
T Consensus 270 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 270 MVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLER---Y------DLLEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp EEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH---S------CHHHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred EEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhc---C------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99997 99999998887766788899999999999983 2 136788899999999999999999874 3
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecC-ChhHHHH
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLD-RDENYNL 446 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~-~~e~i~~ 446 (456)
++.+..|.+++ |+|++++. +...+.+.|.++||.++||..|+. .++++||+++. +++++++
T Consensus 340 g~~~~~~~~g~-------------~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~ 406 (425)
T 1vp4_A 340 GVKWVKSEGGL-------------FIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVE 406 (425)
T ss_dssp TCEECCCSBSS-------------EEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHH
T ss_pred ceEEecCCccE-------------EEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHH
Confidence 35555555555 89999864 345566777777999999999963 46899999987 7899999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 407 ~l~~l~~~l 415 (425)
T 1vp4_A 407 GIKRLREVV 415 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=315.53 Aligned_cols=322 Identities=16% Similarity=0.178 Sum_probs=257.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
+++|||+.+++++++++.+.+... ..+... ...|++. .++||+++++++.. +|.... +++|++|+|+
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~-------~~~l~~~la~~l~~~~g~~~~-~~~v~~t~g~ 98 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLK-KYLDET---VLGYTGP-------TEEYKKTVKKWMKDRHQWDIQ-TDWIINTAGV 98 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHH-HHHHHC---CCSSBCC-------CHHHHHHHHHHHHHHHCCCCC-GGGEEEESSH
T ss_pred CCceeeeecCCCCCCCHHHHHHHH-HHHhcC---CCCCCCC-------cHHHHHHHHHHHHHHhCCCCC-hhhEEEcCCH
Confidence 478999999998776655554322 112111 2356664 29999999999864 565543 5789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc----CCCeEEEEcCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK----DGPYIELVTSPN 239 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~----~~~~~i~v~~P~ 239 (456)
++++.++++++..+|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .++++|++++||
T Consensus 99 ~~a~~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~ 174 (399)
T 1c7n_A 99 VPAVFNAVREFTKPGD----GVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH 174 (399)
T ss_dssp HHHHHHHHHHHCCTTC----EEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB
T ss_pred HHHHHHHHHHhcCCCC----EEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCC
Confidence 9999999999999999 99999999999999999999998876653 333332 367899999999
Q ss_pred CCCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCCCC----CCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 240 NPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSITYP----ADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 240 NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~~~----~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||||.+++ ++|+++|+++|+||+|.+..+ .++... .+++++++||||.+|++|+|+||+++++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 254 (399)
T 1c7n_A 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKN 254 (399)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECC
Confidence 99999987 278999999999999986432 222221 3678999999999999999999999976
Q ss_pred HHHHHHHHHHHhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCC
Q 012785 303 MEVAKKMTKYIELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~ 380 (456)
+++++.+.......++ +++++.|.++.++|+. . ++++++.++.++++++.+.+.|++ ++++.+.++.
T Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 323 (399)
T 1c7n_A 255 PDIRERFTKSRDATSGMPFTTLGYKACEICYKE---C--------GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE 323 (399)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS
T ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC---C--------hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC
Confidence 7899999887665544 6799999999998872 2 568899999999999999999998 6667777777
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++ |+|++++. +...+.+.|. ++||.++||..|+. .++++||+++..++++++++++|++++
T Consensus 324 ~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 390 (399)
T 1c7n_A 324 GTY-------------LQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKAL 390 (399)
T ss_dssp BSS-------------EEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ceE-------------EEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHH
Confidence 776 78999863 4566777775 79999999999973 578999999888899999999998875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=313.93 Aligned_cols=317 Identities=16% Similarity=0.229 Sum_probs=255.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+++|||+.|+|+++.++.+.+... ..+.. ...|++..| .++|+++++++++. ++++|++|+|++
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~----~~~y~~~~~-----~~~l~~~la~~~~~------~~~~v~~~~g~~ 88 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVR-RALGR----QDQYAPPAG-----LPALREALAEEFAV------EPESVVVTSGAT 88 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHH-HHTTT----SCSCCCTTC-----CHHHHHHHHHHHTS------CGGGEEEESSHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHH-HHHHH----hcCCCCCCC-----CHHHHHHHHHhcCC------ChhhEEEcCChH
Confidence 457999999998876655554322 11221 235887767 59999999999753 456899999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc---CCCeEEEEcCCCCC
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~---~~~~~i~v~~P~NP 241 (456)
+++.+++.++..+|| +|++++|+|+.+...++..|.+++.++.+ .+.++. .+++++++++||||
T Consensus 89 ~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np 164 (381)
T 1v2d_A 89 EALYVLLQSLVGPGD----EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNP 164 (381)
T ss_dssp HHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTT
T ss_pred HHHHHHHHHhCCCCC----EEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCC
Confidence 999999999999999 99999999999999999999998876654 344433 25789999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCC----CCCCC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQY----TSITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~----~~~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++ ++|+++|+++|+||+|.+..+ .++.. ..+++++++|+||.+|++|+|+||++++ +++++.
T Consensus 165 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~-~~~~~~ 243 (381)
T 1v2d_A 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGP-KEFMPR 243 (381)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECC-TTTHHH
T ss_pred CCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeC-HHHHHH
Confidence 999986 278899999999999986433 11111 3578999999999999999999999996 889999
Q ss_pred HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 309 l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
+.......+++++++.|.++.++|+... .++++++.+++++++++.+.+.|++.+ +.+..+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~----- 308 (381)
T 1v2d_A 244 LAGMRQWTSFSAPTPLQAGVAEALKLAR---------REGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTY----- 308 (381)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSS-----
T ss_pred HHHHHhhcccCCCcHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCcce-----
Confidence 8887776788999999999999887421 145788899999999999999999864 5666666665
Q ss_pred ccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 389 RAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++.. + +.++++++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 309 --------~~~~~~~~~-~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~ 369 (381)
T 1v2d_A 309 --------FLMAELPGW-D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVN 369 (381)
T ss_dssp --------EEEEECTTC-C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred --------EEEEecChH-h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 899998643 2 77888999999999999974 4789999998899999999999998763
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=326.54 Aligned_cols=304 Identities=17% Similarity=0.184 Sum_probs=236.5
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHh--cCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHKVV--GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP 205 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~~~--g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~ 205 (456)
...|++..| .++||++|++++... |.+.. +++|++|+|+++++.+++++|..+||....+|+++.|+|+.|.
T Consensus 122 ~~~Y~~~~G-----~~~lr~~ia~~~~~~~gG~~~~-~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~ 195 (498)
T 3ihj_A 122 LGSYSASQG-----VNCIREDVAAYITRRDGGVPAD-PDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYS 195 (498)
T ss_dssp ------CCS-----CHHHHHHHHHHHHHHTTTCCCC-GGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHH
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHhcCCCCCC-cccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHH
Confidence 356999999 599999999999654 46664 5799999999999999999999886311118999999999999
Q ss_pred hhhhhcCCeEeeeccCcc--------ccccC--------CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeee
Q 012785 206 SITDCVKSRLYKWAGDAK--------RFNKD--------GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDL 261 (456)
Q Consensus 206 ~~~~~~g~~~~~~~~d~~--------~l~~~--------~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De 261 (456)
..++..|++++.++.|.+ .++.. ++++++++|||||||.+++. +|++++++||+||
T Consensus 196 ~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De 275 (498)
T 3ihj_A 196 AVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADE 275 (498)
T ss_dssp HHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEc
Confidence 999999999998776643 33221 47899999999999999883 7889999999999
Q ss_pred cCCCCCCC------CCCC----------CCCCcEEEecCcccc-CCCCceEEEEEE--eCHHHHHHHHHHHhhccCcCCh
Q 012785 262 AYYWPQYT------SITY----------PADHDLMLFTVSKST-GHAGTRIGWALV--KDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 262 ~y~~~~~~------~~~~----------~~~~~i~i~S~SK~~-g~~G~RiG~l~~--~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
+|.+..+. ++.. ...++|+++||||.+ |++|+|+||+++ .++++++.+.+... ...+++.
T Consensus 276 ~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~-~~~~~~~ 354 (498)
T 3ihj_A 276 VYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLS-VRLCPPV 354 (498)
T ss_dssp TTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHH-HSCCCCH
T ss_pred CccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHh-ccCCCCH
Confidence 99863332 2111 112479999999999 899999999984 34999999988765 5678899
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchh---HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEE
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDEC---FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAW 399 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~ 399 (456)
+.|.++..+++....+. ...++ +++++++.++++++.+.+.|++++++++..|+|++ |+|
T Consensus 355 ~~q~a~~~~l~~~~~g~----~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~-------------~~~ 417 (498)
T 3ihj_A 355 SGQAAMDIVVNPPVAGE----ESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAM-------------YAF 417 (498)
T ss_dssp HHHHHHHHHTCCCCTTS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSS-------------EEC
T ss_pred HHHHHHHHHhcCCccCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEE-------------EEE
Confidence 99999888886211110 01233 34677889999999999999998778888889988 888
Q ss_pred eecCc-------------c-HHH-HHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 400 LKCEQ-------------E-IED-CESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 400 ~~~~~-------------~-~~~-~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++++. + .+. +.++|+++||.++||+.|+. +++++|++++.+++++++++++|++++
T Consensus 418 ~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~ 490 (498)
T 3ihj_A 418 PRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFH 490 (498)
T ss_dssp CEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 76531 1 222 67788899999999999984 567999999778999999999999875
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=318.29 Aligned_cols=330 Identities=16% Similarity=0.189 Sum_probs=262.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
.++.+|||+.|+|++++++.+.+... ..+..+. ...|++..| ..++|++++++++. +|.... +++|++|+
T Consensus 42 ~g~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~~--~~~y~~~~g-----~~~lr~~la~~~~~~~g~~~~-~~~i~~t~ 112 (437)
T 3g0t_A 42 TGTKFCRMEMGVPGLPAPQIGIETEI-QKLREGV--ASIYPNLDG-----LPELKQEASRFAKLFVNIDIP-ARACVPTV 112 (437)
T ss_dssp HTCCCEECCCCSCCSCCCHHHHHHHH-HHHHHTG--GGSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGGEEEES
T ss_pred cCCCEEeccCcCCCCCCCHHHHHHHH-HHHhCCc--CcCCCCCCC-----hHHHHHHHHHHHHHhhCCCCC-cccEEEeC
Confidence 45789999999999887766654322 1222221 246888888 59999999999964 566554 57999999
Q ss_pred CHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------cccc----cCCCeEEEEcC
Q 012785 171 GSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFN----KDGPYIELVTS 237 (456)
Q Consensus 171 G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~----~~~~~~i~v~~ 237 (456)
|++++++++++++. ++||. .+|+++.|+|+.+...++..|.+++.++.|. +.++ ..+++++++++
T Consensus 113 g~t~al~~~~~~l~~~~~gd~--~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~ 190 (437)
T 3g0t_A 113 GSMQGCFVSFLVANRTHKNRE--YGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSN 190 (437)
T ss_dssp HHHHHHHHHHHHHTTSCTTCS--CCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEES
T ss_pred CHHHHHHHHHHHHhcCCCCCc--cEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeC
Confidence 99999999999998 88861 1499999999999999999999998877643 3332 34678999999
Q ss_pred CCCCCcccch--------HHhhhcCcEEEeeecCCCCCC---CCC-------C---CCCCCcEEEecCccccCCCCceEE
Q 012785 238 PNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY---TSI-------T---YPADHDLMLFTVSKSTGHAGTRIG 296 (456)
Q Consensus 238 P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~---~~~-------~---~~~~~~i~i~S~SK~~g~~G~RiG 296 (456)
||||||.+++ ++|+++|+++|+||+|.+..+ .++ . ...+++++++||||.+|++|+|+|
T Consensus 191 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 270 (437)
T 3g0t_A 191 PNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIG 270 (437)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCE
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeE
Confidence 9999999987 278899999999999985322 122 1 236789999999999999999999
Q ss_pred EEEEeCHHHHH-H-----------------HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 297 WALVKDMEVAK-K-----------------MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 297 ~l~~~~~~~~~-~-----------------l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
|++++ +++++ . +.......+++++.+.|.++.++|+.... +++++++.+++++
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--------~~~~~~~~~~~~~ 341 (437)
T 3g0t_A 271 VLMIS-GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACND--------GEYNFRDSVIEYG 341 (437)
T ss_dssp EEEEC-HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHT--------TSCCHHHHHHHHH
T ss_pred EEEEC-HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHh--------HHHHHHHHHHHHH
Confidence 99997 88888 7 77776667889999999999999984221 1334889999999
Q ss_pred HHHHHHHHHHHhcCCcccc------CC-CCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCC
Q 012785 359 TRWKQLRMAVQKSGLFSVP------EL-PSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSP 430 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~------~~-~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~ 430 (456)
++++.+.+.|+++ ++.+. .+ .+++ |+|++++. +.+.+.+.|.++||.++||..|+...
T Consensus 342 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~ 407 (437)
T 3g0t_A 342 RKARIMKKMFLDN-GFNIVYDKDGNEPLADGF-------------YFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKR 407 (437)
T ss_dssp HHHHHHHHHHHTT-TEEESSCEETTEECCSSS-------------EEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCC
T ss_pred HHHHHHHHHHHHc-CCEEeccccCCCCCceeE-------------EEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCC
Confidence 9999999999987 35554 23 5555 89999863 56778888888999999999997644
Q ss_pred -CeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 431 -KYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 431 -~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+++||+++. +++++++++++|++++
T Consensus 408 ~~~iRis~~~~~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 408 NEAMRICTSLLPESQFPDLEKRLQMLN 434 (437)
T ss_dssp TTCEEEECSSSCGGGHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 899999987 8999999999999875
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=314.51 Aligned_cols=324 Identities=16% Similarity=0.170 Sum_probs=249.3
Q ss_pred CCeEEecCCCC----CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-------HhcCccCC
Q 012785 94 ERIINVDHGDP----TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-------VVGNAITE 162 (456)
Q Consensus 94 ~~~i~l~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-------~~g~~~~~ 162 (456)
+++|+|+.|+| ++++++.+.+... ..+.... ...|++..| .++||++++++++ ..|....
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~-~~~~~~~--~~~y~~~~~-----~~~lr~~la~~~~~~~~~~~~~~~~~~- 103 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLK-EAIDSQE--CNGYFPTVG-----SPEAREAVATWWRNSFVHKEELKSTIV- 103 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHH-HHHHTTC--SSSCCCTTC-----CHHHHHHHHHHHHHHHCCSTTTGGGCC-
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHH-HHhhCCc--cCCcCCCCC-----CHHHHHHHHHHHHhhhcccccCCCCCC-
Confidence 57899999997 3555554443322 1122221 246877777 5999999999998 5455554
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCe
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPY 231 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~ 231 (456)
+++|++|+|+++++++++++++.+|| +|++++|+|+.+...++..|.+++.++.| .+.++. .+++
T Consensus 104 ~~~v~~~~g~~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 179 (416)
T 1bw0_A 104 KDNVVLCSGGSHGILMAITAICDAGD----YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTK 179 (416)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEE
T ss_pred cceEEEeCChHHHHHHHHHHhCCCCC----EEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCe
Confidence 57999999999999999999999999 99999999999999999999998876643 333332 2568
Q ss_pred EEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCC---------CCCC--CCCCCcEEEecCccccCCCC
Q 012785 232 IELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQY---------TSIT--YPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~---------~~~~--~~~~~~i~i~S~SK~~g~~G 292 (456)
++++++||||||.+++ ++|+++|+++|+||+|.+..+ .++. ...+++++++||||.++++|
T Consensus 180 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 259 (416)
T 1bw0_A 180 LLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG 259 (416)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG
T ss_pred EEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC
Confidence 8999999999999987 278899999999999986322 2222 12346899999999999999
Q ss_pred ceEEEEEEeCH-HHHHHHH----HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 293 TRIGWALVKDM-EVAKKMT----KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 293 ~RiG~l~~~~~-~~~~~l~----~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+|+||++++++ ++++.+. ... ..+++++++.|.++.++|+ .. .++++++.+++++++++.+.+.
T Consensus 260 lr~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~---~~-------~~~~~~~~~~~~~~~~~~l~~~ 328 (416)
T 1bw0_A 260 WRLGWLLYVDPHGNGPSFLEGLKRVG-MLVCGPCTVVQAALGEALL---NT-------PQEHLDQIVAKIEESAMYLYNH 328 (416)
T ss_dssp GCCEEEEEECTTCSCHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHH---SS-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeCchhhHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHh---cc-------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999854 3444333 321 2367889999999999987 22 1578889999999999999999
Q ss_pred HHhcCCccccCCCCcccccccccCCCCCceEEeecCc-------cHHHHHHHH-HhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 368 VQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-------EIEDCESFL-KGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 368 L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-------~~~~~~~~l-~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
|++++++.+..+.+++ |+|++++. +...+.+.| +++||.++||..|+. ++++||+++.
T Consensus 329 L~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~iRis~~~ 394 (416)
T 1bw0_A 329 IGECIGLAPTMPRGAM-------------YLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-PGFTRLTTTR 394 (416)
T ss_dssp HTTSTTEEECCCCBTT-------------EEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCS
T ss_pred HHhCCCCcccCCCeeE-------------EEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-CCeEEEEecC
Confidence 9987556666566565 88988752 345555554 689999999999975 6899999977
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|++++
T Consensus 395 ~~e~l~~~l~~l~~~l 410 (416)
T 1bw0_A 395 PVEVYREAVERIKAFC 410 (416)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999999875
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=317.39 Aligned_cols=326 Identities=19% Similarity=0.245 Sum_probs=258.6
Q ss_pred hcCCCCeEEecCCCC---CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCce
Q 012785 90 QDGGERIINVDHGDP---TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHH 165 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~ 165 (456)
...++.+|+|+.|+| +++.++.+.+... ..+.... ..|++..| .++++++++++++. +|.... +++
T Consensus 34 ~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~-~~~~~~~---~~y~~~~g-----~~~l~~~la~~l~~~~g~~~~-~~~ 103 (406)
T 1xi9_A 34 EKKGIKVIRLNIGDPVKFDFQPPEHMKEAYC-KAIKEGH---NYYGDSEG-----LPELRKAIVEREKRKNGVDIT-PDD 103 (406)
T ss_dssp HHTTCCCEECCCCCGGGTTCCCCHHHHHHHH-HHHHTTC---CSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGG
T ss_pred HHcCCCEEEecCCCCCcCCCCCCHHHHHHHH-HHHhcCC---CCCCCCCC-----cHHHHHHHHHHHHHhcCCCCC-HHH
Confidence 345678999999999 6665554443321 1222221 35877777 59999999999964 565554 579
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEEE
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIEL 234 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i~ 234 (456)
|++|+|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++.| .+.++. .++++++
T Consensus 104 v~~t~g~~~al~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~ 179 (406)
T 1xi9_A 104 VRVTAAVTEALQLIFGALLDPGD----EILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 179 (406)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred EEEcCChHHHHHHHHHHhCCCCC----EEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence 99999999999999999999999 99999999999999999999998877654 333332 2578899
Q ss_pred EcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC----CCCC-CCCC-cEEEecCccccCCCCceEEEEE-
Q 012785 235 VTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT----SITY-PADH-DLMLFTVSKSTGHAGTRIGWAL- 299 (456)
Q Consensus 235 v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~----~~~~-~~~~-~i~i~S~SK~~g~~G~RiG~l~- 299 (456)
+++||||||.+++ ++|+++|+++|+||+|.+..+. ++.. ..++ +++++||||.+|++|+|+||++
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 259 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYF 259 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEE
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEE
Confidence 9999999999976 2788999999999999864331 1111 1567 8999999999999999999999
Q ss_pred -EeCH----HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 300 -VKDM----EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 300 -~~~~----~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
++ + ++++.+....... ++++++.|.++.++|+ .. .++++++++.++++++.+.+.|++++++
T Consensus 260 ~~~-~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 326 (406)
T 1xi9_A 260 VDP-ENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLT---GP--------MDYLKEYMKKLKERRDYIYKRLNEIPGI 326 (406)
T ss_dssp ECT-TCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHH---SC--------CHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred ecC-chhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHh---CC--------cHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 76 7 8999998876655 7889999999999986 22 3458889999999999999999987666
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFV 448 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l 448 (456)
.+..+.+++ |+|++++. +...+.+.|. ++||.++||..|+. .++++||+++.+++++++++
T Consensus 327 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~ 393 (406)
T 1xi9_A 327 STTKPQGAF-------------YIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAM 393 (406)
T ss_dssp ECCCCCBSS-------------EECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHH
T ss_pred eeecCCeeE-------------EEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHH
Confidence 666666666 78877752 4556666664 89999999999974 46899999987899999999
Q ss_pred HHHHhhh
Q 012785 449 QRLSKIL 455 (456)
Q Consensus 449 ~~L~~~l 455 (456)
++|++++
T Consensus 394 ~~l~~~l 400 (406)
T 1xi9_A 394 DRFEKFM 400 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-38 Score=312.52 Aligned_cols=321 Identities=14% Similarity=0.138 Sum_probs=251.7
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHH-HHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPE-FAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~-lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
+++|||+.++++++.++.+.+... ..+... ...|++. . ++ ||++++++++. +|.... +++|++|+|
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~-~------~~~lr~~la~~l~~~~g~~~~-~~~v~~t~g 95 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALN-QRLMHG---VFGYSRW-K------NDEFLAAIAHWFSTQHYTAID-SQTVVYGPS 95 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHH-HHHTTC---CCCCCCS-C------CHHHHHHHHHHHHHHSCCCCC-GGGEEEESC
T ss_pred CCeeEeeecCCCCCCCHHHHHHHH-HHHhCC---CCCCCCC-C------hHHHHHHHHHHHHHhcCCCCC-HHHEEEcCC
Confidence 468999999998776655554322 112211 2356664 2 78 99999999965 455443 579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------cccccc----CCCeEEEEcCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFNK----DGPYIELVTSP 238 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~~----~~~~~i~v~~P 238 (456)
++++++++++++..+|| +|+++.|+|+.+...++..|.+++.++.+ .+.++. .+++++++++|
T Consensus 96 ~~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p 171 (390)
T 1d2f_A 96 VIYMVSELIRQWSETGE----GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSP 171 (390)
T ss_dssp HHHHHHHHHHHSSCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCC----EEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCC
Confidence 99999999999999999 99999999999999999999998876653 333332 26788999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCCCCC-CC-cEEEecCccccCCCCceEEEEEEeCH
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SITYPA-DH-DLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~~~~-~~-~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
|||||.+++ ++|+++|+++|+||+|.+..+. ++.... +. .+ ++||||.+|++|+|+||++++++
T Consensus 172 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~ 250 (390)
T 1d2f_A 172 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENS 250 (390)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSH
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCH
Confidence 999999987 2788999999999999864322 221111 21 44 99999999999999999999668
Q ss_pred HHHHHHHHHHh-hccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCC
Q 012785 304 EVAKKMTKYIE-LNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELP 380 (456)
Q Consensus 304 ~~~~~l~~~~~-~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~ 380 (456)
++++.+..... ..++ +++++.|.++.++|+. . ++++++.++.++++++.+.+.|++ ++++.+.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 319 (390)
T 1d2f_A 251 SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---G--------APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ 319 (390)
T ss_dssp HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS
T ss_pred HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhc---C--------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCC
Confidence 89888887765 4454 7899999999888872 2 568899999999999999999998 6667777777
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHH-hCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLK-GNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~-~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++ |+|++++. +...+.+.|. ++||.++||..|+. .++++||+++.+++++++++++|++++
T Consensus 320 ~~~-------------~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 320 STY-------------LAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAI 386 (390)
T ss_dssp BCS-------------EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ccE-------------EEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 776 78998863 4566777776 78999999999973 478999999888899999999999876
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=304.78 Aligned_cols=309 Identities=16% Similarity=0.200 Sum_probs=242.6
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
...+.+|+|+.+++++++++.+.+.... ... ....|++ .| .++||++++++++. ++++|++|+
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~--~~~---~~~~y~~-~~-----~~~lr~~la~~~~~------~~~~i~~t~ 75 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAA--AAA---RINRYPF-DA-----EPRVMRKLAEHFSC------PEDNLMLVR 75 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHH--HGG---GTTSCCT-TH-----HHHHHHHHHHHHTS------CGGGEEEES
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHH--hhh---hhccCCC-Cc-----hHHHHHHHHHHhCc------CHHHEEEeC
Confidence 3456789999998888777666543221 112 2346765 46 59999999999864 457999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc-CCCeEEEEcCCCCCCc
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK-DGPYIELVTSPNNPDG 243 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~-~~~~~i~v~~P~NPtG 243 (456)
|+++++++++.++ +|| +|++++|+|+.+...++..|.+++.++.| .+.++. .+++++++++||||||
T Consensus 76 G~~~~l~~~~~~~--~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~v~i~~p~nptG 149 (337)
T 3p1t_A 76 GIDECFDRISAEF--SSM----RFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTG 149 (337)
T ss_dssp HHHHHHHHHHHHS--TTS----EEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTCCTTEEEEEESSCTTTC
T ss_pred CHHHHHHHHHHhc--CCC----eEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999999999988 888 99999999999999999999999887754 334443 3678999999999999
Q ss_pred ccch-----HHhhhcCcEEEeeecCCCCCCCC--CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc
Q 012785 244 SVRQ-----SVVNRSGGILVHDLAYYWPQYTS--ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN 316 (456)
Q Consensus 244 ~~~~-----~l~~~~~~~iI~De~y~~~~~~~--~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~ 316 (456)
.+++ ++|+++++ +|+||+|.+..... .....+++++++||||.+|++|+|+||++++ +++++.+.+.. .
T Consensus 150 ~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~--~ 225 (337)
T 3p1t_A 150 QALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGP-SELIAAMKRKQ--W 225 (337)
T ss_dssp CCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECC-HHHHHHHHTTS--C
T ss_pred CCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeC-HHHHHHHHhhc--C
Confidence 9988 37888887 55699998532221 2234578999999999999999999999996 99999887764 3
Q ss_pred cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc
Q 012785 317 TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA 396 (456)
Q Consensus 317 ~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 396 (456)
.++++.+.|.++.++|+ + .+++++.++++.++++.+.+.|++++ +.+.++.| +
T Consensus 226 ~~~~~~~~~~a~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~--------------~ 278 (337)
T 3p1t_A 226 FCNVGTLDLHALEAALD---N---------DRAREAHIAKTLAQRRRVADALRGLG-YRVASSEA--------------N 278 (337)
T ss_dssp TTCSCHHHHHHHHHHHT---C---------HHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCSS--------------S
T ss_pred CCCCCHHHHHHHHHHhC---C---------HHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCCCC--------------e
Confidence 67889999999998887 2 34456667777888899999999874 44444333 3
Q ss_pred eEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 397 FAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 397 f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|+..+. .+.+.+.|+++||.++||..|+. ++++||+++ ++++++++++.|+++++
T Consensus 279 ~~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~~-~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 279 FVLVENAA-GERTLRFLRERGIQVKDAGQFGL-HHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp EEEEECTT-THHHHHHHHHTTEECEEGGGGTC-CSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred EEEEEcCC-HHHHHHHHHHCCeEEEECccCCC-CCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 67877753 45677888999999999999976 789999995 78899999999998753
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=307.64 Aligned_cols=311 Identities=17% Similarity=0.215 Sum_probs=245.0
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.|++++..++.+.+... ..+ . ....|++. | ..+||++++++++. ++++|++|+|
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~-~~~-~---~~~~y~~~-~-----~~~l~~~la~~~~~------~~~~v~~~~g 84 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALI-DNL-D---CIERYPDA-D-----YFHLHQALARHHQV------PASWILAGNG 84 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHH-HTG-G---GGGSCCCT-T-----CHHHHHHHHHHHTS------CGGGEEEESS
T ss_pred CccceEEeccccCCCCCCHHHHHHHH-HHH-H---HhhcCCCC-C-----HHHHHHHHHHHHCc------CHHHEEECCC
Confidence 34568999999987765555543321 111 1 13457664 5 59999999999953 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-ccc---c----c--CCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-KRF---N----K--DGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~~l---~----~--~~~~~i~v~~P~NP 241 (456)
++++++++++++ +|| +|+++.|+|+.+...++..|.+++.++.+. +++ + . .+++++++++||||
T Consensus 85 ~~~al~~~~~~~--~gd----~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~np 158 (364)
T 1lc5_A 85 ETESIFTVASGL--KPR----RAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNP 158 (364)
T ss_dssp HHHHHHHHHHHH--CCS----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTT
T ss_pred HHHHHHHHHHHc--CCC----eEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCC
Confidence 999999999998 668 999999999999999999999998887764 222 1 1 35788999999999
Q ss_pred Ccccch--------HHhhhcCcEEEeeecCCCCCCC--C-C--CCCCCCcEEEecCccccCCCCceEEEEE-EeCHHHHH
Q 012785 242 DGSVRQ--------SVVNRSGGILVHDLAYYWPQYT--S-I--TYPADHDLMLFTVSKSTGHAGTRIGWAL-VKDMEVAK 307 (456)
Q Consensus 242 tG~~~~--------~l~~~~~~~iI~De~y~~~~~~--~-~--~~~~~~~i~i~S~SK~~g~~G~RiG~l~-~~~~~~~~ 307 (456)
||.+++ ++|+++|+++|+||+|.+..+. + + ....+++++++||||.+|++|+|+||++ ++ +++++
T Consensus 159 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~ 237 (364)
T 1lc5_A 159 TGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD-DAAMA 237 (364)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC-HHHHH
T ss_pred CCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECC-HHHHH
Confidence 999987 2788999999999999854321 1 2 1335689999999999999999999999 75 99999
Q ss_pred HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 308 KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 308 ~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
.+..... +++++++.|.++.++|+ + .+++++.++.++++++.+.+.|++++++.+.++.
T Consensus 238 ~l~~~~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------- 296 (364)
T 1lc5_A 238 RMRRQQM--PWSVNALAALAGEVALQ---D---------SAWQQATWHWLREEGARFYQALCQLPLLTVYPGR------- 296 (364)
T ss_dssp HHHHHSC--TTCSCHHHHHHHHHGGG---C---------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS-------
T ss_pred HHHHhCC--CCCCCHHHHHHHHHHHh---C---------cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC-------
Confidence 8887754 67899999999999887 2 4688899999999999999999987555554332
Q ss_pred cccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 388 GRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 388 ~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++|+|++++.+...+.+.|.++||.++||..|+. .++++||+++ ++++++++++.|++++
T Consensus 297 -------g~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 297 -------ANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 357 (364)
T ss_dssp -------SSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred -------CeEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 3378888865444577778889999999999953 5789999984 6778888998888775
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=321.90 Aligned_cols=303 Identities=17% Similarity=0.182 Sum_probs=241.5
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhc-CCCCCCCcEEEEeCCCCCChh
Q 012785 128 LSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALS-SQDASEPISVVSAAPYYSSYP 205 (456)
Q Consensus 128 ~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~gd~~~~~Vlv~~P~y~~~~ 205 (456)
...|++..| .++||++++++++ ..|.... +++|++|+|+++++.+++++++ .+|| +|++++|+|+.+.
T Consensus 127 ~~~Y~~~~G-----~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~~gd----~Vlv~~p~y~~~~ 196 (500)
T 3tcm_A 127 TGAYSHSQG-----IHGLRDAIASGIASRDGFPAN-ADDIFLTDGASPGVHLMMQLLIRNEKD----GILVPIPQYPLYS 196 (500)
T ss_dssp SSSCCCTTC-----CHHHHHHHHHHHHHHHSSCCC-GGGEEEESSSHHHHHHHHHHHCCSTTE----EEEEEESCCTHHH
T ss_pred CCCcCCCcC-----hHHHHHHHHHHHHhhcCCCCC-cccEEEcCCHHHHHHHHHHHHcCCCCC----EEEEeCCCcHhHH
Confidence 456898889 5999999999995 4566654 5799999999999999999998 7999 9999999999999
Q ss_pred hhhhhcCCeEeeeccCcc--------cccc---C------CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEee
Q 012785 206 SITDCVKSRLYKWAGDAK--------RFNK---D------GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHD 260 (456)
Q Consensus 206 ~~~~~~g~~~~~~~~d~~--------~l~~---~------~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~D 260 (456)
..++..|++++.+++|.+ .++. . ++++|+++|||||||.+++. +|+++++++|+|
T Consensus 197 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~D 276 (500)
T 3tcm_A 197 ASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD 276 (500)
T ss_dssp HHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 999999999988776543 3322 1 56889999999999999882 689999999999
Q ss_pred ecCCCCCC------CCCC---------CCCCCcEEEecCcccc-CCCCceEEEEEEe--CHHHHHHHHHHHhhccCcCCh
Q 012785 261 LAYYWPQY------TSIT---------YPADHDLMLFTVSKST-GHAGTRIGWALVK--DMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 261 e~y~~~~~------~~~~---------~~~~~~i~i~S~SK~~-g~~G~RiG~l~~~--~~~~~~~l~~~~~~~~~~~s~ 322 (456)
|+|.+..+ .++. ....++|+++||||.| |++|+|+||+++. ++++++.+.+... ...+++.
T Consensus 277 eay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 355 (500)
T 3tcm_A 277 EVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIAS-VNLCSNI 355 (500)
T ss_dssp CTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHH-TTCCCCH
T ss_pred cCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHh-cccCCCH
Confidence 99986322 1111 1123579999999999 8999999999982 3889999988764 5788899
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
+.|.++..+++....+.. ....+.++++.+++.++++++.+.+.|++++++++..++|++ |+|+++
T Consensus 356 ~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~-------------~~~~~~ 421 (500)
T 3tcm_A 356 TGQILASLVMNPPKASDE-SYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAM-------------YVFPQI 421 (500)
T ss_dssp HHHHHHHHHHSCCCSSST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTT-------------EECCEE
T ss_pred HHHHHHHHHhcCccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEE-------------EEeeee
Confidence 999999998862110100 000134667788899999999999999998778888888888 888655
Q ss_pred C--cc-------------HHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 403 E--QE-------------IEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 403 ~--~~-------------~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
. .. ...+.++|+++||.++||+.|+. +.++||++++.+++++++++++|++++
T Consensus 422 ~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~ 491 (500)
T 3tcm_A 422 CLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFH 491 (500)
T ss_dssp CCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHH
T ss_pred cCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3 21 12256788899999999999974 567999999888899999999999875
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=318.59 Aligned_cols=324 Identities=14% Similarity=0.107 Sum_probs=246.9
Q ss_pred CCCCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCc--
Q 012785 92 GGERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENH-- 164 (456)
Q Consensus 92 ~~~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~-- 164 (456)
..+++|||+.| +|++.++ +.+.++.. ..+..+. ...|++..| .++||+++++++...+....+++
T Consensus 47 ~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~-~~~~~~~--~~~Y~~~~g-----~~~lr~~ia~~l~~~~~~~~~~~~~ 118 (420)
T 4f4e_A 47 TRPTKVNLGVGVYTNEDGKIPLLRAVRDAEK-ARVEAGL--PRGYLPIDG-----IAAYDASVQKLLLGDDSPLIAAGRV 118 (420)
T ss_dssp CCSSCEECCCCSCCCTTSCCCCCHHHHHHHH-HHHHTCC--CCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCE
T ss_pred CCCCcEEeeeeeeECCCCCccCcHHHHHHHH-HHhccCC--CCCCCCCCC-----cHHHHHHHHHHhcCCCccccccCce
Confidence 34588999999 7877665 44444322 2222211 236888888 59999999999965333211346
Q ss_pred eEEEccCHHHHHHHHH--HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc------C
Q 012785 165 HIVVGTGSTQLFQAAL--YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK------D 228 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~--~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~------~ 228 (456)
+|++|+|+++++++++ .+++.+|| +|++++|+|+++...++..|.+++.++. |.+.++. .
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~gd----~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 194 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPKA----KVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP 194 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred EEEECCccHHHHHHHHHHHHHhCCCC----EEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC
Confidence 8999999999999994 45678999 9999999999999999999999988776 3343322 3
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC------CC---CCCCCCcEEEecCccccCCC
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------SI---TYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~---~~~~~~~i~i~S~SK~~g~~ 291 (456)
+++++++++||||||.+++. +|+++|+++|+||+|.+..+. ++ ....+++|+++||||.+|++
T Consensus 195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 274 (420)
T 4f4e_A 195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLY 274 (420)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCc
Confidence 56899999999999999872 788999999999999864432 11 13467899999999999999
Q ss_pred CceEEEEEE--eCHHHHHH----HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALV--KDMEVAKK----MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~~--~~~~~~~~----l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|+|+||+++ +++++++. ++........+++.+.|.++..+|....-.. .+++++++++++++++++.+.
T Consensus 275 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~~~~~~~l~ 349 (420)
T 4f4e_A 275 GERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRA-----SWVQELGEMRDRIRAMRNGLV 349 (420)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 34665554 3333334566788999999998887210000 025678999999999999999
Q ss_pred HHHHhc---CCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|+++ +++.+..+.+++ |+|++++ .+.+.++++++||.+.|+. ||+++. ++
T Consensus 350 ~~L~~~~~~~~~~~~~~~~g~-------------~~~~~~~--~~~~~~~l~~~gI~v~~~~---------Ris~~~~~~ 405 (420)
T 4f4e_A 350 ERLKAAGIERDFSFINAQRGM-------------FSYSGLT--SAQVDRLREEFGIYAVSTG---------RICVAALNT 405 (420)
T ss_dssp HHHHHTTCSSCCTHHHHSCSS-------------EEECCCC--HHHHHHHHHHHCEECCTTS---------EEEGGGCCT
T ss_pred HHHHhcCCCCCceeECCCccE-------------EEEeCCC--HHHHHHHHHhCCEEecCCC---------eEEEecCCH
Confidence 999987 356666677777 8998884 5678888999999999952 999987 88
Q ss_pred hHHHHHHHHHHhhhC
Q 012785 442 ENYNLFVQRLSKILS 456 (456)
Q Consensus 442 e~i~~~l~~L~~~l~ 456 (456)
+++++++++|+++++
T Consensus 406 ~~i~~~~~~l~~~l~ 420 (420)
T 4f4e_A 406 RNLDVVANAIAAVLK 420 (420)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999999874
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=334.71 Aligned_cols=405 Identities=15% Similarity=0.136 Sum_probs=283.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccCCCCchhhHHHHhh----hhhccccCCCceeecccccccccCCCCCCcccc
Q 012785 6 PLFSLKNLLVVSLALNVSLIWRAMHESEKCNFDSSFSLQQQRR----SVMAGCVLKEKEHVSERTHLSLSSSPSPSPSSS 81 (456)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (456)
|.|-+|+.| ..++-....-...|+-|+-+|.|-....++|-- -+...+...+. +.. ..+..... ...
T Consensus 14 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~-~~g~~~~~----g~~ 84 (533)
T 3f6t_A 14 GAFEISRKM-LALAQKNEKSNIFLNAGRGNPNWIQTLARLAFVRLVQFGVTESKLTIN---NGI-MAGYINTD----GIR 84 (533)
T ss_dssp --CCCCHHH-HHHHHHCGGGHHHHHTCCCCCSCEECHHHHHHHHHHHHHHHHHTTTCE---ETT-EECCCCCT----THH
T ss_pred CcHhhHHHH-HHHHhhcCccceeeeCCCCCchhccCcHHHHHHHHHHHHHHHHHhhcC---CCC-CCCCCCch----hHH
Confidence 478888888 666644212224566799899998777776633 22233333222 100 00111110 111
Q ss_pred ccccchhhhcC------CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH
Q 012785 82 LTSTDIQSQDG------GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV 155 (456)
Q Consensus 82 ~~~~~~~~~~~------~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~ 155 (456)
........... ..++|+|+.|+|++++++++.... ..+.. ..+|.+..| .+++|+++++++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~~i~l~~g~~~~~~~~~v~a~~--~~~~~----~~y~~~~~g-----~~~lr~~ia~~l~~ 153 (533)
T 3f6t_A 85 ERLFAFLDPDKNDEDKFLIDAVNYCHTELGLNRDKVVAEWV--NGAVA----NNYPVPDRC-----LVNTEKIINYFLQE 153 (533)
T ss_dssp HHHHHHCCTTTCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--HHHHT----CSCCSSSSC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccccHhheeccCCCCCcCCcHHHHHHH--HHHHh----CCCCCCccc-----HHHHHHHHHHHHHH
Confidence 12221100000 124789999999998776665431 11221 234556678 59999999999965
Q ss_pred h-c--CccCCCceEEEccCHHHHHHHHHHH-----hcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------
Q 012785 156 V-G--NAITENHHIVVGTGSTQLFQAALYA-----LSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------ 221 (456)
Q Consensus 156 ~-g--~~~~~~~~I~~t~G~~~al~~~~~~-----l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------ 221 (456)
. + ....++++|++|+|+++++.+++.+ ++++|| +|++++|+|+.+...++..|.+++.++.+
T Consensus 154 ~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd----~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 229 (533)
T 3f6t_A 154 LSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGD----KIAINEPIFTPYLRIPELKDYELVEVDLHSYEKND 229 (533)
T ss_dssp HHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTC----EEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTT
T ss_pred hcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcC----EEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccC
Confidence 4 3 3444457999999999999999998 788999 99999999999999999999988776653
Q ss_pred ----cccccc---CCCeEEEEcCCCCCCcccchH--------Hhh-hcCcEEEeeecCCCCCCC--CCC-CCCCCcEEEe
Q 012785 222 ----AKRFNK---DGPYIELVTSPNNPDGSVRQS--------VVN-RSGGILVHDLAYYWPQYT--SIT-YPADHDLMLF 282 (456)
Q Consensus 222 ----~~~l~~---~~~~~i~v~~P~NPtG~~~~~--------l~~-~~~~~iI~De~y~~~~~~--~~~-~~~~~~i~i~ 282 (456)
.+.++. .+++++++++||||||.+++. +|+ ++++++|+||+|.+..+. ++. ...+++++++
T Consensus 230 ~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~ 309 (533)
T 3f6t_A 230 WEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVY 309 (533)
T ss_dssp SEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEE
T ss_pred CCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEe
Confidence 333332 367899999999999999882 667 689999999999864332 211 2347899999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHH------------------------------------HHHHhhccCcCChHHHH
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKM------------------------------------TKYIELNTIGVSKDSQL 326 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l------------------------------------~~~~~~~~~~~s~~~q~ 326 (456)
||||.+|++|+|+||++++++++++++ .......+.+++.+.|.
T Consensus 310 S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~ 389 (533)
T 3f6t_A 310 SYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQI 389 (533)
T ss_dssp ESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHH
T ss_pred cCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHH
Confidence 999999999999999999844333332 23344557788999998
Q ss_pred HHHH-HHHhhhC----CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEee
Q 012785 327 RAAK-VLKVVSD----SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLK 401 (456)
Q Consensus 327 ~a~~-~L~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~ 401 (456)
+++. .+..+.+ + ..+++++++++.++++++.+.+.|. .+ +.+..+.+++ |+|++
T Consensus 390 a~a~~a~~~L~~~~g~~------~~~~~~~~~~~~~~~r~~~l~~~L~-~~-~~~~~~~~g~-------------~~~~~ 448 (533)
T 3f6t_A 390 MEALFSMTHLLTSTNGG------SDDPYIDIARKLVSERYDQLHDAMQ-AP-KDETDTNTHY-------------YSLID 448 (533)
T ss_dssp HHHHHHHHHHTTCBGGG------TBCHHHHHHHHHHHHHHHHHHHHHT-CC-CCCSTTBCCS-------------EEEEE
T ss_pred HHHHHHHHHHhhhcccc------chHHHHHHHHHHHHHHHHHHHHhcC-CC-ccccCCCceE-------------EEEEe
Confidence 8432 1222210 1 1368899999999999999999997 54 5667777887 89998
Q ss_pred cCc-------------------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 402 CEQ-------------------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 402 ~~~-------------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
++. +.+.+.++++++||.+.||+.|+.+++++|||++. +++++++++++|++++
T Consensus 449 l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l 522 (533)
T 3f6t_A 449 IYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELL 522 (533)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred hHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHH
Confidence 752 23556677789999999999998778899999986 8999999999999876
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=312.67 Aligned_cols=327 Identities=17% Similarity=0.255 Sum_probs=249.2
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccc----cc---cCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCc--cCCC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTI----VI---PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNA--ITEN 163 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~----~~---~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~--~~~~ 163 (456)
..+|+|+.+++.++.+ .+.+...... +. ........|+++.| ..+|+++++++++. +|.. . ++
T Consensus 36 ~~~i~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g-----~~~lr~~la~~~~~~~g~~~~~-~~ 108 (428)
T 1iay_A 36 NGVIQMGLAENQLCLD-LIEDWIKRNPKGSICSEGIKSFKAIANFQDYHG-----LPEFRKAIAKFMEKTRGGRVRF-DP 108 (428)
T ss_dssp TSBEECSSCCCCSSHH-HHHHHHHHCTTSSTTC----CHHHHHHCCCTTC-----CHHHHHHHHHHHHHHTTTCSCC-CT
T ss_pred CceeeeccccchhhHH-HHHHHHHhccccccccccccccHhhcCCCCCCC-----cHHHHHHHHHHHHHhcCCCCCC-Ch
Confidence 4689999988877654 3332211000 00 11112357888888 59999999999974 4533 3 35
Q ss_pred ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh-hhcCCeEeeeccC--------cccccc-------
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-DCVKSRLYKWAGD--------AKRFNK------- 227 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~-~~~g~~~~~~~~d--------~~~l~~------- 227 (456)
++|++|+|+++++.+++++++.+|| +|++++|+|+.+...+ ...|.+++.++.+ .+.++.
T Consensus 109 ~~i~~~~G~~~ai~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 184 (428)
T 1iay_A 109 ERVVMAGGATGANETIIFCLADPGD----AFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQK 184 (428)
T ss_dssp TSCEEEEHHHHHHHHHHHHHCCTTC----EEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHH
T ss_pred hhEEEccChHHHHHHHHHHhCCCCC----eEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHh
Confidence 7999999999999999999999999 9999999999998755 4679998877654 233321
Q ss_pred --CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC---CC-------CCCcEEEe
Q 012785 228 --DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT---YP-------ADHDLMLF 282 (456)
Q Consensus 228 --~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~---~~-------~~~~i~i~ 282 (456)
.+++++++++||||||.+++. +|+++|+++|+||+|.+..+. ++. .. .++++++.
T Consensus 185 ~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~ 264 (428)
T 1iay_A 185 SNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVY 264 (428)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEE
T ss_pred cCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEe
Confidence 157889999999999999882 788999999999999863222 211 12 57889999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
||||.+|++|+|+||++++++++++.+.+... .+++++++|.++.++|+. .. ..++++++.++.++++++
T Consensus 265 s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~---~~-----~~~~~~~~~~~~~~~~~~ 334 (428)
T 1iay_A 265 SLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYFLAAMLSD---EK-----FVDNFLRESAMRLGKRHK 334 (428)
T ss_dssp ESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHHHHHHTTC---HH-----HHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCceEEEEEeCCHHHHHHHHHHHh--cccCCHHHHHHHHHHhcC---hH-----HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999965889988887643 467899999999998872 10 013478889999999999
Q ss_pred HHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHHHh-CCEEeecCCCCCC-CCCe
Q 012785 363 QLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFLKG-NKILTRSGKHFGF-SPKY 432 (456)
Q Consensus 363 ~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l~~-~gI~v~pg~~fg~-~~~~ 432 (456)
.+.+.|++++ +.+.++.+++ |+|++++. ....+.+.|.+ +||.++||..|+. .+++
T Consensus 335 ~l~~~L~~~g-~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 335 HFTNGLEVVG-IKCLKNNAGL-------------FCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHTT-CCBCCCSSSS-------------EEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHhcC-CcccCCCeeE-------------EEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 9999999874 5555554555 89999864 23356666665 5999999999874 3689
Q ss_pred EEEEec-CChhHHHHHHHHHHhhh
Q 012785 433 VRISML-DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~-~~~e~i~~~l~~L~~~l 455 (456)
+||+++ .+++++++++++|++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFV 424 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHH
Confidence 999998 59999999999999876
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=317.25 Aligned_cols=324 Identities=17% Similarity=0.218 Sum_probs=261.5
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G 171 (456)
++++|||+.|+++++.++.+.++.... +... ...|++.. .++++++++++.. ++.... +++|++|+|
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~-~~~~---~~~y~~~~-------~~l~~~l~~~l~~~~g~~~~-~~~v~~~~g 127 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINY-GREH---IFGYNYFN-------DDLYQAVIDWERKEHDYAVV-KEDILFIDG 127 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHH-HHHC---CSSCBCCC-------HHHHHHHHHHHHHHHCCCCC-GGGEEEESC
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHH-HhcC---CcCCCCCC-------HHHHHHHHHHHHHHhCCCCC-HHHEEEcCC
Confidence 678999999999998877666542211 2222 23466543 8999999999854 565554 579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc---------Ccccccc----CCCeEEEEcCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---------DAKRFNK----DGPYIELVTSP 238 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~---------d~~~l~~----~~~~~i~v~~P 238 (456)
++++++.+++++.++|| +|+++.|+|+++...++..|.+++.++. |.+.++. .+++++++++|
T Consensus 128 ~~ea~~~a~~~~~~~gd----~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p 203 (421)
T 3l8a_A 128 VVPAISIALQAFSEKGD----AVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSP 203 (421)
T ss_dssp HHHHHHHHHHHHSCTEE----EEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCC----EEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCC
Confidence 99999999999999999 9999999999999999999998876654 4454443 46899999999
Q ss_pred CCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCC----CCCCCcEEEecCccccCCCCceEEEEEEe
Q 012785 239 NNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SIT----YPADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 239 ~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
|||||.+++ ++|+++|+++|+||+|.+..+. ++. +..++++++.|+||.+|++|+|+||++++
T Consensus 204 ~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~ 283 (421)
T 3l8a_A 204 HNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQ 283 (421)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcC
Confidence 999999976 2799999999999999863322 221 12367899999999999999999999997
Q ss_pred CHHHHHHHHHHHh-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 302 DMEVAKKMTKYIE-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 302 ~~~~~~~l~~~~~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
++++++.+..... ....+.++++|.++.++|+. . ++++++.++.++++++.+.+.|++++.+.+.++.
T Consensus 284 ~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~---~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~ 352 (421)
T 3l8a_A 284 NESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY---G--------KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPE 352 (421)
T ss_dssp SHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCS
T ss_pred CHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc---c--------HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCC
Confidence 7899999988763 34558899999999998872 2 6789999999999999999999987667777888
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|++ ++|++++. +.+.+.+.| +++||.+.||..|+. +++++||+++.+++++++++++|++++
T Consensus 353 ~~~-------------~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 353 GTY-------------LVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVF 419 (421)
T ss_dssp BSS-------------EEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred eeE-------------EEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 877 78898864 445566656 577999999999974 579999999889999999999999886
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 420 ~ 420 (421)
T 3l8a_A 420 G 420 (421)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=316.39 Aligned_cols=329 Identities=19% Similarity=0.275 Sum_probs=252.2
Q ss_pred CCCCeEEecCCCCCCCchhHhhhccccccccc-----C---ccccccccCCCCcccCCCHHHHHHHHHHHHHh-c--Ccc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIP-----G---WQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-G--NAI 160 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-----~---~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-g--~~~ 160 (456)
++..+|+|+.+...+..+.+.... ....... + ......|++..| .++||++++++++.. + ...
T Consensus 36 ~p~~~i~lg~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~y~~~~g-----~~~l~~~la~~~~~~~~~~~~~ 109 (435)
T 3piu_A 36 NTNGIIQMGLAENQLCFDLLESWL-AKNPEAAAFKKNGESIFAELALFQDYHG-----LPAFKKAMVDFMAEIRGNKVTF 109 (435)
T ss_dssp BTTSBEECSSCCCCSSHHHHHHHH-HHCTTGGGTEETTEECHHHHHHCCCTTC-----CHHHHHHHHHHHHHHTTTSSCC
T ss_pred CCCCeEEeccccccccHHHHHHHH-HhCccccccccccccccccccccCCCCC-----cHHHHHHHHHHHHHhhCCCCCC
Confidence 445789999998877755433321 1110000 0 011246888888 599999999999742 2 233
Q ss_pred CCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh-hcCCeEeeeccC--------cccccc----
Q 012785 161 TENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD-CVKSRLYKWAGD--------AKRFNK---- 227 (456)
Q Consensus 161 ~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~-~~g~~~~~~~~d--------~~~l~~---- 227 (456)
++++|++|+|+++++..++.+++++|| +|++++|+|+.+...+. ..|.+++.++.+ .+.++.
T Consensus 110 -~~~~v~~~~gg~~a~~~~~~~l~~~gd----~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 184 (435)
T 3piu_A 110 -DPNHLVLTAGATSANETFIFCLADPGE----AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQE 184 (435)
T ss_dssp -CGGGEEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHH
T ss_pred -CHHHEEEcCChHHHHHHHHHHhcCCCC----eEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHH
Confidence 357999999999999999999999999 99999999999998888 789999877654 333432
Q ss_pred -----CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC---CC---------CCC
Q 012785 228 -----DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT---YP---------ADH 277 (456)
Q Consensus 228 -----~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~---~~---------~~~ 277 (456)
.++++|++++||||||.+++. +|+++|+++|+||+|.+..+. ++. .. .++
T Consensus 185 ~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 264 (435)
T 3piu_A 185 AEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQR 264 (435)
T ss_dssp HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGG
T ss_pred HHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCC
Confidence 167899999999999999872 689999999999999852222 111 11 567
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
+++++||||.+|++|+|+||++++++.+.+.+.+... ..+.+++.|.++.+++.. .. ..++++++.++++
T Consensus 265 ~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~---~~-----~~~~~~~~~~~~~ 334 (435)
T 3piu_A 265 VHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS--FGLVSSQTQHLLSAMLSD---KK-----LTKNYIAENHKRL 334 (435)
T ss_dssp EEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG--GSCCCHHHHHHHHHHHHC---HH-----HHHHHHHHHHHHH
T ss_pred EEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhcC---hH-----HHHHHHHHHHHHH
Confidence 8999999999999999999999976888888876654 567889999999998872 20 0144678889999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--------cHHHHHHHH-HhCCEEeecCCCCCC
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------EIEDCESFL-KGNKILTRSGKHFGF 428 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------~~~~~~~~l-~~~gI~v~pg~~fg~ 428 (456)
+++++.+.+.|++.+ +.+..+.+++ |+|+.++. ....+.+.| +++||.+.||..|+.
T Consensus 335 ~~~~~~l~~~L~~~g-~~~~~~~~g~-------------~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 400 (435)
T 3piu_A 335 KQRQKKLVSGLQKSG-ISCLNGNAGL-------------FCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC 400 (435)
T ss_dssp HHHHHHHHHHHHTTT-CEECCCCSSS-------------EEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHhcC-CcccCCCeeE-------------EEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC
Confidence 999999999999874 5666666666 89999864 233455555 455999999999974
Q ss_pred -CCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 429 -SPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 -~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
.++++||+++. +++++++++++|++++
T Consensus 401 ~~~~~iRi~~~~~~~e~i~~~l~~l~~~l 429 (435)
T 3piu_A 401 TEPGWFRVCFANLPERTLDLAMQRLKAFV 429 (435)
T ss_dssp SSTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 67899999987 8999999999999876
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=316.65 Aligned_cols=320 Identities=15% Similarity=0.127 Sum_probs=251.6
Q ss_pred CCeEEecCCCC-CCCchhHh--hhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCce---EE
Q 012785 94 ERIINVDHGDP-TMYEKYWQ--KVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHH---IV 167 (456)
Q Consensus 94 ~~~i~l~~g~p-~~~~~~~~--~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~---I~ 167 (456)
+.+|||+.|+| ++..++.+ .+... ..+.. .....|++..| .++||+++++++...+... ++++ |+
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~-~~~~~--~~~~~y~~~~g-----~~~lr~~ia~~~~~~~~~~-~~~~~~~i~ 117 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMF-NDLTP--DEIFPYAPPQG-----IEELRDLWQQKMLRDNPEL-SIDNMSRPI 117 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTB-SSCCG--GGTSSCCCTTC-----CHHHHHHHHHHHHHHCTTC-CGGGBCCCE
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHH-HhcCc--ccccccCCCCC-----CHHHHHHHHHHHhccCccc-CCCccceEE
Confidence 46799999999 77665544 32211 11211 12356888878 5999999999997665333 3567 99
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh-cCCeEeeeccCc-------ccccc---C---CCeEE
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC-VKSRLYKWAGDA-------KRFNK---D---GPYIE 233 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~-~g~~~~~~~~d~-------~~l~~---~---~~~~i 233 (456)
+|+|+++++++++++++++|| +|++++|+|+.+...++. .|.+++.++.+. +.++. . +++++
T Consensus 118 ~t~g~~~al~~~~~~l~~~gd----~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 193 (430)
T 2x5f_A 118 VTNALTHGLSLVGDLFVNQDD----TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIM 193 (430)
T ss_dssp EESHHHHHHHHHHHHHCCTTC----EEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEE
T ss_pred EcCCchHHHHHHHHHHhCCCC----EEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999 999999999999999999 999988776543 33322 1 56889
Q ss_pred EEcCCCCCCcccch--------HHhhh-----cCcEEEeeecCCCCCCC-----CCC----CCCCC---cEEEecCcccc
Q 012785 234 LVTSPNNPDGSVRQ--------SVVNR-----SGGILVHDLAYYWPQYT-----SIT----YPADH---DLMLFTVSKST 288 (456)
Q Consensus 234 ~v~~P~NPtG~~~~--------~l~~~-----~~~~iI~De~y~~~~~~-----~~~----~~~~~---~i~i~S~SK~~ 288 (456)
++++||||||.+++ ++|++ +|+++|+||+|.+..+. ++. ...++ +++++||||.+
T Consensus 194 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 273 (430)
T 2x5f_A 194 ILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF 273 (430)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT
T ss_pred EEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC
Confidence 99999999999988 27889 99999999999864322 221 22567 89999999999
Q ss_pred CCCCceEEEEEE---eCHHHHHHHHHHHhh----ccCcCChHHHHHHHHHHH-hhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 289 GHAGTRIGWALV---KDMEVAKKMTKYIEL----NTIGVSKDSQLRAAKVLK-VVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 289 g~~G~RiG~l~~---~~~~~~~~l~~~~~~----~~~~~s~~~q~~a~~~L~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
|++|+|+||+++ + +++++.+...... .+++++++.|.++.++|+ .. . +.+++++.++.++++
T Consensus 274 ~~~G~riG~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~-------~~~~~~~~~~~~~~~ 343 (430)
T 2x5f_A 274 FAWGFRVGFMTFGTSD-QTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK--Q-------FDKEIEQNIQTLKER 343 (430)
T ss_dssp TCGGGCCEEEEEBCCC-HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH--H-------HHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEecCC-HHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh--H-------HHHHHHHHHHHHHHH
Confidence 999999999999 6 9999999887655 678899999999999887 41 1 244556699999999
Q ss_pred HHHHHHHHH----hcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHh-CCEEeecCCCCCCCCCeEE
Q 012785 361 WKQLRMAVQ----KSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKG-NKILTRSGKHFGFSPKYVR 434 (456)
Q Consensus 361 ~~~l~~~L~----~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~-~gI~v~pg~~fg~~~~~iR 434 (456)
++.+.+.|+ +. ++.+..+.+++ |+|+++++ +...+.+.|.+ +||.++|| .++++|
T Consensus 344 ~~~l~~~L~~~~~~~-g~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~l~~~~gi~v~~g-----~~~~iR 404 (430)
T 2x5f_A 344 YEVTKEVVYADQYHS-HWQAYDFNSGY-------------FMAIKVHDVDPEALRKHLIDKYSIGVIAL-----NATDIR 404 (430)
T ss_dssp HHHHHHHHTCGGGTT-TEEECCCCBSS-------------EEEEEESSSCHHHHHHHHHHHHCEECEEC-----SSSEEE
T ss_pred HHHHHHHHHhhCCCC-CceeeCCCceE-------------EEEeCCCCCCHHHHHHHHHHhCCEEEecC-----CCCeEE
Confidence 999999998 44 35666666666 89999862 45566666666 99999997 368999
Q ss_pred EEec-CChhHHHHHHHHHHhhh
Q 012785 435 ISML-DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 435 is~~-~~~e~i~~~l~~L~~~l 455 (456)
|+++ .+++++++++++|++++
T Consensus 405 is~~~~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 405 IAFSCVEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp EEGGGSCGGGHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHH
Confidence 9998 68899999999999876
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=314.97 Aligned_cols=322 Identities=14% Similarity=0.131 Sum_probs=246.4
Q ss_pred CCCeEEecCCCC-----CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 93 GERIINVDHGDP-----TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 93 ~~~~i~l~~g~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
+.++|+|++|+| ++++++.+.++.. . ... .....|++..| .++||+++++++.....+. .+++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~-~-~~~--~~~~~y~~~~g-----~~~lr~~ia~~~~~~~~~~-~~~~i~ 106 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYL-S-LSD--SEHVGYAPIAG-----IPDFLCAAEKECFGNFRPE-GHIRSI 106 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHH-T-CCH--HHHHSCCCTTC-----CHHHHHHHHHHHHGGGCCS-SEEEEE
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHH-H-hcc--cccCCCCCCCC-----hHHHHHHHHHHHhcccCcc-ccccEE
Confidence 558899999987 6666665554321 1 111 11246888888 5999999999985432111 124999
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-------cccccc---C----CCe-E
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-------AKRFNK---D----GPY-I 232 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~---~----~~~-~ 232 (456)
+|+|+++++.+++++++++|| +|++++|+|+.+...++..|.+++.++.+ .+.++. . +++ +
T Consensus 107 ~t~g~~~al~~~~~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 182 (418)
T 3rq1_A 107 ATAGGTGGIHHLIHNYTEPGD----EVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVV 182 (418)
T ss_dssp EESHHHHHHHHHHHHHSCTTC----EEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEE
T ss_pred ECCchHHHHHHHHHHhcCCCC----EEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEE
Confidence 999999999999999999999 99999999999999999999999887753 333322 1 455 7
Q ss_pred EEEcCC-CCCCcccchH--------Hhh------hcCcEEEeeecCCCCCCC-----CC----CCCCCC--cEEEecCcc
Q 012785 233 ELVTSP-NNPDGSVRQS--------VVN------RSGGILVHDLAYYWPQYT-----SI----TYPADH--DLMLFTVSK 286 (456)
Q Consensus 233 i~v~~P-~NPtG~~~~~--------l~~------~~~~~iI~De~y~~~~~~-----~~----~~~~~~--~i~i~S~SK 286 (456)
+++++| |||||.+++. +|+ ++|+++|+||+|.+..+. ++ ....++ +|+++||||
T Consensus 183 vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 262 (418)
T 3rq1_A 183 VIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSK 262 (418)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTT
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 889999 9999999882 555 899999999999753332 11 122344 588999999
Q ss_pred ccCCCCceEEEEEE---eCHHHHHHHHHHHhhc----cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALV---KDMEVAKKMTKYIELN----TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 287 ~~g~~G~RiG~l~~---~~~~~~~~l~~~~~~~----~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
.+|++|+|+||+++ + +++++.+....... ..+++.++|.++..+|+....-. .+.++++++++.+++
T Consensus 263 ~~~~~G~r~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-----~~~~~~~~~~~~~~~ 336 (418)
T 3rq1_A 263 GFTMYGQRVGAMIGISDD-EEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFK-----EYEAERNCYYQLIRD 336 (418)
T ss_dssp TTTCCSSCCEEEEEEESS-HHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHH-----HHHHHHHHHHHHHHH
T ss_pred CCcCcCCcceEEEEEeCC-HHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHH
Confidence 99999999999998 5 89999888765432 25689999999999887210000 023455677889999
Q ss_pred HHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 360 ~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
+++.+.+.|++++ +.+..+.+++ |+|++++ +.+.+.+.|+++||.++|| ++++||+++.
T Consensus 337 ~~~~l~~~L~~~g-~~~~~~~~~~-------------~~~~~~~-~~~~~~~~l~~~gi~v~~g------~~~iRis~~~ 395 (418)
T 3rq1_A 337 RADIFKQEAAQVG-LPMLPYRGGF-------------FITIPTD-SANAICEELKKEHIYVIAL------ANGIRIAACG 395 (418)
T ss_dssp HHHHHHHHHHHHT-CCCCCCCSSS-------------EEEEECT-THHHHHHHHHHTTEECEEC------SSEEEEEGGG
T ss_pred HHHHHHHHHHhcC-CCCCCCCceE-------------EEEcCCC-CHHHHHHHHHhCCEEEecC------CCCeEEEEec
Confidence 9999999999874 6777777877 8998886 4556667889999999996 4689999985
Q ss_pred -ChhHHHHHHHHHHhhh
Q 012785 440 -RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 -~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|++++
T Consensus 396 ~~~~~i~~~~~~l~~~l 412 (418)
T 3rq1_A 396 IPKCQMTGLAEKIYNAM 412 (418)
T ss_dssp SCHHHHTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 9999999999999876
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=307.90 Aligned_cols=314 Identities=16% Similarity=0.169 Sum_probs=253.4
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
++.+|||+.|+++++.++.+.+... ..+... ....|++. | ..+||++++++++. . ++++|++|+|+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~-~-----~~~l~~~la~~~g~---~--~~~~i~~~~g~ 94 (367)
T 3euc_A 29 SHGLVKLDAMENPYRLPPALRSELA-ARLGEV--ALNRYPVP-S-----SEALRAKLKEVMQV---P--AGMEVLLGNGS 94 (367)
T ss_dssp CTTCEECCSSCCCCCCCHHHHHHHH-HHHHHH--HTTCSCCC-C-----HHHHHHHHHHHHTC---C--TTCEEEEEEHH
T ss_pred CCCeeEccCCCCCCCCCHHHHHHHH-HHhhhh--hhhcCCCC-c-----HHHHHHHHHHHhCC---C--CcceEEEcCCH
Confidence 4578999999999887766654322 112111 13457764 5 49999999999852 1 35799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---C-CCeEEEEcCCCCCC
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---D-GPYIELVTSPNNPD 242 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~-~~~~i~v~~P~NPt 242 (456)
++++++++++++++|| +|+++.|+|+.+...++..|.+++.++.| .+.++. . +++++++++|||||
T Consensus 95 t~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 170 (367)
T 3euc_A 95 DEIISMLALAAARPGA----KVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPT 170 (367)
T ss_dssp HHHHHHHHHHTCCTTC----EEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTT
T ss_pred HHHHHHHHHHHcCCCC----EEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCC
Confidence 9999999999999999 99999999999999999999999877654 344432 2 68899999999999
Q ss_pred cccchH--------Hhhhc--CcEEEeeecCCCCCCCC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 243 GSVRQS--------VVNRS--GGILVHDLAYYWPQYTS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 243 G~~~~~--------l~~~~--~~~iI~De~y~~~~~~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
|.+++. +|+++ |+++|+||+|.+....+ .....+++++++||||. +++|+|+||++++ +++++.+
T Consensus 171 G~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~-~~~~~~~ 248 (367)
T 3euc_A 171 GNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGD-PQWLEQL 248 (367)
T ss_dssp CCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEEC-HHHHHHH
T ss_pred CCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeC-HHHHHHH
Confidence 999862 68889 99999999998643222 22445788999999999 8999999999996 9999888
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGR 389 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~ 389 (456)
..... +++.+++.|.++.++|+. .+++++.+++++++++.+.+.|++++++.+. +.
T Consensus 249 ~~~~~--~~~~~~~~~~a~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~--------- 304 (367)
T 3euc_A 249 DKVRP--PYNVNVLTEATALFALEH------------VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PS--------- 304 (367)
T ss_dssp GGGCC--SSCCCHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CC---------
T ss_pred HHhCC--CCCCCHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CC---------
Confidence 77654 678999999999999972 5678899999999999999999987555533 22
Q ss_pred cCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 390 AFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.++|+|++++ +.+.+.+.|.++||.+++|..|+. .++++||+++ +++++++++++|+++++
T Consensus 305 ----~~~~~~~~~~-~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 305 ----AANFLLARVP-DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp ----SSSEEEEECS-CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred ----CCeEEEEECC-CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 3338999988 667788889999999999998853 5789999995 88999999999999874
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=313.47 Aligned_cols=322 Identities=17% Similarity=0.168 Sum_probs=251.9
Q ss_pred CCCeEEecCCCCCCC--chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 93 GERIINVDHGDPTMY--EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
++.+|||+.|.|+.. +++.+.+... ..+.........|++..| ..+||++++++++. ++++|++|+
T Consensus 31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~y~~~~~-----~~~l~~~la~~~g~------~~~~v~~~~ 98 (397)
T 2zyj_A 31 RPGILSFAGGLPAPELFPKEEAAEAAA-RILREKGEVALQYSPTEG-----YAPLRAFVAEWIGV------RPEEVLITT 98 (397)
T ss_dssp STTCEEESSCCCCGGGCCHHHHHHHHH-HHHHHHHHHHTSCCCTTC-----CHHHHHHHHHHHTS------CGGGEEEES
T ss_pred CCCceecCCCCCCchhCCHHHHHHHHH-HHHHhcchhhhCCCCCCC-----CHHHHHHHHHHhCC------ChhhEEEec
Confidence 457899999987642 2333332211 112211111235777677 59999999999942 457999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-----Ccccccc----CCCeEE-EEcCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-----DAKRFNK----DGPYIE-LVTSPNN 240 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-----d~~~l~~----~~~~~i-~v~~P~N 240 (456)
|+++++.++++++.++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++ ++++|||
T Consensus 99 g~~~al~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~n 174 (397)
T 2zyj_A 99 GSQQALDLVGKVFLDEGS----PVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQN 174 (397)
T ss_dssp HHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCT
T ss_pred cHHHHHHHHHHHhCCCCC----EEEEeCCCcHHHHHHHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcC
Confidence 999999999999999999 9999999999999999999999987775 3444432 256776 5789999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCCCC-----CC--CCC---CCcEEEecCccccCCCCceEEEEEEeC
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTS-----IT--YPA---DHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~-----~~--~~~---~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
|||.+++ ++|+++|+++|+||+|.+..+.+ +. ... +++++++|+||.+| +|+|+||++++
T Consensus 175 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~- 252 (397)
T 2zyj_A 175 PTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAH- 252 (397)
T ss_dssp TTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECC-
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecC-
Confidence 9999987 27889999999999998643321 11 112 67899999999999 99999999997
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C-CccccCCC
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G-LFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~-~~~~~~~~ 380 (456)
+++++.+.......+++++++.|.++.++|+ ++ .. +++++.++.++++++.+.+.|++. + ++.+..|.
T Consensus 253 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~---~~------~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~ 322 (397)
T 2zyj_A 253 PEALQKLVQAKQGADLHTPMLNQMLVHELLK---EG------FS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPK 322 (397)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHT---TT------HH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCS
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH---hC------CH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCC
Confidence 9999999887776678889999999999887 22 12 678899999999999999999874 4 36665566
Q ss_pred CcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecC-ChhHHHHHHHHHHhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLD-RDENYNLFVQRLSKI 454 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~-~~e~i~~~l~~L~~~ 454 (456)
+++ |+|++++. +...+.+.|.++||.++||..|+. .++++||+++. +++++++++++|+++
T Consensus 323 ~g~-------------~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 323 GGM-------------FVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRA 389 (397)
T ss_dssp BSS-------------EEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ccE-------------EEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 665 89999864 466777888888999999999963 46899999987 789999999999887
Q ss_pred h
Q 012785 455 L 455 (456)
Q Consensus 455 l 455 (456)
+
T Consensus 390 l 390 (397)
T 2zyj_A 390 L 390 (397)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=308.80 Aligned_cols=310 Identities=16% Similarity=0.238 Sum_probs=249.8
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.|++++++++.+.+.... .+. ....|++. | .++||++++++++. ++++|++|+|
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~-~~~----~~~~y~~~-~-----~~~l~~~la~~~~~------~~~~i~~~~g 76 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARD-AVV----KANRYAKN-E-----ILMLGNKLAAHHQV------EAPSILLTAG 76 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHH-TGG----GTTSCCHH-H-----HHHHHHHHHHHTTS------CGGGEEEESH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHH-HHh----hCcCCCCC-c-----hHHHHHHHHHHhCC------ChHHEEEeCC
Confidence 456789999999998777666554221 111 23456553 5 48999999999863 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc-----CCCeEEEEcCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK-----DGPYIELVTSPNN 240 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~-----~~~~~i~v~~P~N 240 (456)
++++++++++++.++|| +|+++.|+|+.+...++..|.+++.++.| .+.++. .+++++++++|||
T Consensus 77 ~~~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~n 152 (354)
T 3ly1_A 77 SSEGIRAAIEAYASLEA----QLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNN 152 (354)
T ss_dssp HHHHHHHHHHHHCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCT
T ss_pred hHHHHHHHHHHHhCCCC----eEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCC
Confidence 99999999999999999 99999999999999999999999887765 333332 4689999999999
Q ss_pred CCcccchH-----Hhhh--cCcEEEeeecCCCCCCCC----C---CCCC-CCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 241 PDGSVRQS-----VVNR--SGGILVHDLAYYWPQYTS----I---TYPA-DHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 241 PtG~~~~~-----l~~~--~~~~iI~De~y~~~~~~~----~---~~~~-~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
|||.+++. +++. +|+++|+||+|.+..+.+ . .... +++++++||||.+|++|+|+||++++ +++
T Consensus 153 ptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~ 231 (354)
T 3ly1_A 153 PTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-PTV 231 (354)
T ss_dssp TTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-HHH
T ss_pred CcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-HHH
Confidence 99999872 5544 999999999998533321 1 1223 78999999999999999999999996 999
Q ss_pred HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc
Q 012785 306 AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT 385 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~ 385 (456)
++.+..... .++++++.|.++.++|+ + .+++++.+++++++++.+.+.|++++ +.+.++
T Consensus 232 ~~~~~~~~~--~~~~~~~~~~a~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~------ 290 (354)
T 3ly1_A 232 IALMGRYVA--GEKINFSGVDAALASMN---D---------SAFITYSKKSNDVSRQILLKALEDLK-LPYLPS------ 290 (354)
T ss_dssp HHHHGGGTT--CSCCCHHHHHHHHHHTT---C---------HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC------
T ss_pred HHHHHHhcC--CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHHHCC-CeECCC------
Confidence 999888765 47899999999999887 2 46888999999999999999999874 444332
Q ss_pred cccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.++|+|++++.+.+.+.+.|.++||.++ |..++ .++++||+++ +++++++++++|++++
T Consensus 291 --------~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~-~~~~iRis~~-~~~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 291 --------EGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPP-ADNWCRISLG-TPQEMQWVADTMREFR 349 (354)
T ss_dssp --------CSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTT-CTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred --------CceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCC-CCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 3348999997667788888889999999 76544 5889999985 7899999999999876
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=309.50 Aligned_cols=328 Identities=17% Similarity=0.191 Sum_probs=254.0
Q ss_pred CCCCeEEecCCCCCCC--chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPTMY--EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~ 168 (456)
.+..+|||+.|.|+.. +++.+.+... ..+........ |++..| ..+||+++++++.. +|.... +++|++
T Consensus 32 ~g~~~idl~~g~~~~~~~~~~~v~~a~~-~~~~~~~~~~~-y~~~~~-----~~~l~~~la~~~~~~~g~~~~-~~~v~~ 103 (407)
T 2zc0_A 32 KGVKLISLAAGDPDPELIPRAVLGEIAK-EVLEKEPKSVM-YTPANG-----IPELREELAAFLKKYDHLEVS-PENIVI 103 (407)
T ss_dssp SSCCCEECCSCCCCTTTSCHHHHHHHHH-HHHHHCGGGGS-CCCTTC-----CHHHHHHHHHHHHHHSCCCCC-GGGEEE
T ss_pred CCCceEeCCCCCCCchhCCHHHHHHHHH-HHHhhcccccc-CCCCCC-----CHHHHHHHHHHHHHhcCCCCC-cceEEE
Confidence 3457899999987643 3333333211 11222211234 777777 59999999999954 454443 579999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-----Ccccccc-------C--CCeEE-
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-----DAKRFNK-------D--GPYIE- 233 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-----d~~~l~~-------~--~~~~i- 233 (456)
|+|+++++.+++++++++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. . ++++|
T Consensus 104 t~g~t~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 179 (407)
T 2zc0_A 104 TIGGTGALDLLGRVLIDPGD----VVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIY 179 (407)
T ss_dssp ESHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCHHHHHHHHHHHhcCCCC----EEEEeCCChHHHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEE
Confidence 99999999999999999999 9999999999999999999999887765 3343321 2 56776
Q ss_pred EEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-----CCC--CCCCCcEEEecCccccCCCCceEEEE
Q 012785 234 LVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-----SIT--YPADHDLMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 234 ~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-----~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l 298 (456)
++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++++++||||.++ +|+|+||+
T Consensus 180 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 258 (407)
T 2zc0_A 180 TIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWI 258 (407)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEE
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEE
Confidence 57899999999887 2788999999999999864321 121 22357899999999999 99999999
Q ss_pred EEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch-hHHHHHHHHHHHHHHHHHHHHHhc-CCccc
Q 012785 299 LVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE-CFFEFTNHQMSTRWKQLRMAVQKS-GLFSV 376 (456)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~ 376 (456)
+++ +++++.+.......+++++++.|.++.++|+. . ..+ +++++.++.++++++.+.+.|++. +.+.+
T Consensus 259 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (407)
T 2zc0_A 259 IAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKR---G------YFEKYHLEGALLGYKEKRDIMLKALENHLPNAEF 328 (407)
T ss_dssp ECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHT---T------HHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCB
T ss_pred ecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc---C------CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 996 99999999887767788899999999999973 2 124 567788999999999999999874 55666
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-CEEeecCCCCCC---CCCeEEEEecC-ChhHHHHHHH
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-KILTRSGKHFGF---SPKYVRISMLD-RDENYNLFVQ 449 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-gI~v~pg~~fg~---~~~~iRis~~~-~~e~i~~~l~ 449 (456)
..|.+++ |+|++++. +...+.+.|.++ ||.++||..|+. .++++||+++. ++++++++++
T Consensus 329 ~~~~~~~-------------~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~ 395 (407)
T 2zc0_A 329 TKPIAGM-------------FVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIK 395 (407)
T ss_dssp CCCSBSS-------------EEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHH
T ss_pred ecCCCcE-------------EEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHH
Confidence 5565665 89999864 456677777666 999999999863 46899999987 7899999999
Q ss_pred HHHhhh
Q 012785 450 RLSKIL 455 (456)
Q Consensus 450 ~L~~~l 455 (456)
+|++++
T Consensus 396 ~l~~~l 401 (407)
T 2zc0_A 396 KLAKLY 401 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=313.87 Aligned_cols=323 Identities=16% Similarity=0.131 Sum_probs=245.1
Q ss_pred CCCCeEEecCCCC-CCCchhH----hhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCce
Q 012785 92 GGERIINVDHGDP-TMYEKYW----QKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHH 165 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~----~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~ 165 (456)
..+.+|||+.|+| +...+++ +.+... . .... .....|++..| .++||++++++++. +|.... +++
T Consensus 26 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~-~-~~~~-~~~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~~-~~~ 96 (401)
T 7aat_A 26 TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEA-M-IAAK-KMDKEYLPIAG-----LADFTRASAELALGENSEAFK-SGR 96 (401)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHH-H-HHHT-TCCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHH-TTC
T ss_pred CCCCceeeeeeeEECCCCCEechHHHHHHHH-H-hccc-ccccCCCCCCC-----CHHHHHHHHHHhcCCCccccc-cCc
Confidence 3446899999998 6554433 222111 1 1111 11346888788 59999999999964 454443 578
Q ss_pred EEE--ccCHHHHHHHHHHHhc---CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cc----cccc-
Q 012785 166 IVV--GTGSTQLFQAALYALS---SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AK----RFNK- 227 (456)
Q Consensus 166 I~~--t~G~~~al~~~~~~l~---~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~----~l~~- 227 (456)
|++ |+|+++++++++.++. ++|| +|++++|+|+.+...++..|.+++.++.+ .+ .++.
T Consensus 97 i~~v~t~G~~~al~~~~~~l~~~~~~gd----~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 172 (401)
T 7aat_A 97 YVTVQGISGTGSLRVGANFLQRFFKFSR----DVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI 172 (401)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHCTTCC----EEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS
T ss_pred eEEEecCcchHHHHHHHHHHHHhccCCC----EEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhC
Confidence 877 9999999999887765 8899 99999999999999999999999877753 22 2332
Q ss_pred -CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCcccc
Q 012785 228 -DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVSKST 288 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~SK~~ 288 (456)
.+++++++++||||||.+++. +|+++|+++|+||+|.+..+.+ + ....+++|+++||||.|
T Consensus 173 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 252 (401)
T 7aat_A 173 PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM 252 (401)
T ss_dssp CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc
Confidence 357899999999999999882 7889999999999998754432 1 13457899999999999
Q ss_pred CCCCceEEEEEEe--CHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 289 GHAGTRIGWALVK--DME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 289 g~~G~RiG~l~~~--~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
|++|+|+||++++ +++ +.+.+.......+.+++...|.++..+++ ++... ..+.+++++.+++++++++
T Consensus 253 ~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~--~~~~~~~~~~~~~~~~~r~ 327 (401)
T 7aat_A 253 GLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILN---TPELR--KEWLVEVKGMADRIISMRT 327 (401)
T ss_dssp CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH---CHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC---CHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999872 355 55666666666678888899998888886 21000 0014668889999999999
Q ss_pred HHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 363 QLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 363 ~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
.+.+.|++++ .+.+..|++++ |+|++++ .+.+..+++++||.+.|+ +||+++.
T Consensus 328 ~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~ll~~~gi~v~~~---------~Ris~~~ 383 (401)
T 7aat_A 328 QLVSNLKKEGSSHNWQHITDQIGM-------------FCFTGLK--PEQVERLTKEFSIYMTKD---------GRISVAG 383 (401)
T ss_dssp HHHHHHHHTTCCSCCHHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCTT---------CEEEGGG
T ss_pred HHHHHHHhcCCCCCCceecCCcce-------------EEecCCC--HHHHHHHHHhCCEeccCC---------CeEEecc
Confidence 9999999873 35666677777 8998874 566777788999999874 5999986
Q ss_pred -ChhHHHHHHHHHHhhhC
Q 012785 440 -RDENYNLFVQRLSKILS 456 (456)
Q Consensus 440 -~~e~i~~~l~~L~~~l~ 456 (456)
+++++++++++|+++++
T Consensus 384 ~~~~~i~~~~~~l~~~~~ 401 (401)
T 7aat_A 384 VASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp CCTTTHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHHHhC
Confidence 77789999999999864
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=314.70 Aligned_cols=323 Identities=20% Similarity=0.210 Sum_probs=240.5
Q ss_pred CCCCeEEecCCCCCCCchhHhhhccccccccc--CccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIP--GWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
.++.+|+|+.|+++++.++.+.+.... .+.. .......|++..| .++||+++++++. .|. . ++++|++|
T Consensus 31 ~~~~~i~l~~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~y~~~~g-----~~~lr~~la~~l~-~g~-~-~~~~v~~~ 101 (400)
T 3asa_A 31 PQHTVINLSIGDTTQPLNASVAEAFAS-SIARLSSPTTCRGYGPDFG-----LPALRQKLSEDFY-RGF-V-DAKEIFIS 101 (400)
T ss_dssp TTSCCEECSSCCCCCCCCHHHHHHHHH-HHHHHTSSSCCCCCCCTTC-----CHHHHHHHHHTTS-TTS-S-CGGGEEEE
T ss_pred CCCceEeccCCCCCCCCCHHHHHHHHH-HHhcccccccccCCCCCCC-----CHHHHHHHHHHHH-cCC-C-CHHHEEEc
Confidence 456789999999987665544433221 1111 1111245776677 5999999999964 343 3 35799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCe-EeeeccCcc-cc----cc-CCCeEEEEcCCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSR-LYKWAGDAK-RF----NK-DGPYIELVTSPNNPD 242 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~-~~~~~~d~~-~l----~~-~~~~~i~v~~P~NPt 242 (456)
+|+++++.+++. ++.+|| +|++++|+|+.+...++..|.+ ++.++.+.+ ++ +. .+++++++++|||||
T Consensus 102 ~G~~~al~~~~~-~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~npt 176 (400)
T 3asa_A 102 DGAKVDLFRLLS-FFGPNQ----TVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPT 176 (400)
T ss_dssp SCHHHHHHHHHH-HHCSSC----EEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTT
T ss_pred cChHHHHHHHHH-HcCCCC----EEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCC
Confidence 999999999765 457888 9999999999999999999998 888776643 22 22 357899999999999
Q ss_pred cccchH--------HhhhcCcEEEeeecCCCCCCC-----CCCCC---CCCcEEEecCccccCCCCceEEEEEEeCHHH-
Q 012785 243 GSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SITYP---ADHDLMLFTVSKSTGHAGTRIGWALVKDMEV- 305 (456)
Q Consensus 243 G~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~~~---~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~- 305 (456)
|.+++. +|+++|+++|+||+|.+..+. ++... .+++++++||||.+|++|+|+||++++ +++
T Consensus 177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~-~~~~ 255 (400)
T 3asa_A 177 GTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIP-QELT 255 (400)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECC-TTCB
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeC-hhhc
Confidence 999872 688999999999999853221 22111 357899999999999999999999997 666
Q ss_pred ------HHHHHHHHhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 012785 306 ------AKKMTKYIELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378 (456)
Q Consensus 306 ------~~~l~~~~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 378 (456)
++.+.......++ +++.+.|.++.++|+. .++++.++.++++++.+.+.|++.+ +.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-------------~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 321 (400)
T 3asa_A 256 YADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSI-------------LPQLEAIHYYRENSDLLRKALLATG-FEVFG 321 (400)
T ss_dssp CTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------------TTTCHHHHHHHHHHHHHHHHHHHTT-CEEEE
T ss_pred cchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCc-------------HHHHHHHHHHHHHHHHHHHHHHHCC-CeeeC
Confidence 5655443332333 6899999999998873 1456788899999999999999874 55555
Q ss_pred CCCcccccccccCCCCCceEEee-cCc--cHHHHH-HHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHh
Q 012785 379 LPSQFCTFLGRAFEPQPAFAWLK-CEQ--EIEDCE-SFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~f~~~~-~~~--~~~~~~-~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
+.+++ |+|++ ++. +...+. .+++++||.++||+.|+. +++++||++..+++++++++++|++
T Consensus 322 ~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~ 388 (400)
T 3asa_A 322 GEHAP-------------YLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQM 388 (400)
T ss_dssp CSSSS-------------EEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC
T ss_pred CCCce-------------EEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHH
Confidence 55555 89999 763 333344 455577999999999974 4689999976799999999999998
Q ss_pred hhC
Q 012785 454 ILS 456 (456)
Q Consensus 454 ~l~ 456 (456)
+++
T Consensus 389 ~~~ 391 (400)
T 3asa_A 389 APA 391 (400)
T ss_dssp ---
T ss_pred HHH
Confidence 763
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=329.46 Aligned_cols=318 Identities=14% Similarity=0.145 Sum_probs=240.0
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHH-HHhc-Cc--cCCCceEEEccC
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLH-KVVG-NA--ITENHHIVVGTG 171 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~-~~~g-~~--~~~~~~I~~t~G 171 (456)
+|+|+.|+|.++++.++... . ..+ . ...|+++.| .++||+++++++ ...+ .. ..++++|++|+|
T Consensus 106 ~i~l~~g~~~~~~~~~~~al-~-~~~-~----~~~Y~~~~g-----~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G 173 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEM-V-DGI-L----GCNYPVPPR-----MLNISEKIVRQYIIREMGADAIPSESVNLFAVEG 173 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHH-H-HHH-H----TCSCCSSSS-----CCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEH
T ss_pred hhecccCCCCCCChHHHHHH-H-Hhh-h----cCCCCCCcC-----CHHHHHHHHHHHHHHhccCCCCCCCcceEEEECC
Confidence 78999999998776655532 1 111 1 136998888 589999987765 4432 21 223579999999
Q ss_pred HHHHHHHHHHH-----hcCCCCCCCcEEEEeCCCCCChhhhhhhc--CCeEeeeccCc--------ccccc---CCCeEE
Q 012785 172 STQLFQAALYA-----LSSQDASEPISVVSAAPYYSSYPSITDCV--KSRLYKWAGDA--------KRFNK---DGPYIE 233 (456)
Q Consensus 172 ~~~al~~~~~~-----l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~--g~~~~~~~~d~--------~~l~~---~~~~~i 233 (456)
+++++.+++++ ++++|| +|++++|+|+.|...+... |++++.++.|. +.++. .+++++
T Consensus 174 ~~eal~~~~~~l~~~~l~~~Gd----~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v 249 (546)
T 2zy4_A 174 GTAAMAYIFESLKLNGLLKAGD----KVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIF 249 (546)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTC----EEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEE
T ss_pred HHHHHHHHHHHhhhhhcCCCCC----EEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEE
Confidence 99999999988 478999 9999999999999886544 67777766543 33433 367899
Q ss_pred EEcCCCCCCcccchH--------Hh--hhcCcEEEeeecCCCCCC--CCCC-CCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 234 LVTSPNNPDGSVRQS--------VV--NRSGGILVHDLAYYWPQY--TSIT-YPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 234 ~v~~P~NPtG~~~~~--------l~--~~~~~~iI~De~y~~~~~--~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
+++|||||||.+++. +| ++++++||+||+|.+..+ .++. ...+++|+++||||.+|++|+|+||+++
T Consensus 250 ~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~ 329 (546)
T 2zy4_A 250 FCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAA 329 (546)
T ss_dssp EEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEE
T ss_pred EEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEE
Confidence 999999999999983 66 789999999999986432 2221 1246899999999999999999999999
Q ss_pred eCHHHHHHHHHH-------------H-----------------------hhccCcCChHHHHHHH-----HHHHhhhCCC
Q 012785 301 KDMEVAKKMTKY-------------I-----------------------ELNTIGVSKDSQLRAA-----KVLKVVSDSC 339 (456)
Q Consensus 301 ~~~~~~~~l~~~-------------~-----------------------~~~~~~~s~~~q~~a~-----~~L~~~~~~~ 339 (456)
+++++++++.+. . ...+.+++.+.|.++. ++++ ++
T Consensus 330 ~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~---~~- 405 (546)
T 2zy4_A 330 HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD---EA- 405 (546)
T ss_dssp ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC---TT-
T ss_pred CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh---cc-
Confidence 833477776321 1 1234578889998743 3333 22
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------------
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------------- 404 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------------- 404 (456)
+.+++.+++.+++|++.+.+.|. .+ +.+.++.++| |+|++++.
T Consensus 406 -------~~~~~~~r~~~~~r~~~l~~~L~-~~-~~~~~~~~~~-------------~l~~~l~~~~~~~~~~~~~~wl~ 463 (546)
T 2zy4_A 406 -------DEYKHTLKQLIRRRETTLYRELG-MP-PLRDENAVDY-------------YTLIDLQDVTAKLYGEAFSEWAV 463 (546)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHGGGT-SS-CCCCTTBCCS-------------EEEEEHHHHHHHHHCHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcC-CC-cccCCCCeeE-------------EEEEEHHHhhcccccHHHHHHhh
Confidence 57889999999999999998885 33 4445566777 88998742
Q ss_pred ----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 405 ----EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+.+.+.++++++||.++||+.|+.+++++||+++. +++++++++++|++++
T Consensus 464 ~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l 519 (546)
T 2zy4_A 464 KQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMA 519 (546)
T ss_dssp HHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHH
Confidence 23557788999999999999998777899999987 8899999999998875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=309.28 Aligned_cols=324 Identities=12% Similarity=0.067 Sum_probs=244.4
Q ss_pred CCCCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCc--
Q 012785 92 GGERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENH-- 164 (456)
Q Consensus 92 ~~~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~-- 164 (456)
...++|||+.| +|+..+| +.+.++.....+.... ...|++..| .++||+++++++...+....+++
T Consensus 24 ~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~--~~~y~~~~g-----~~~lr~~la~~~~~~~~~~~~~~~~ 96 (397)
T 3fsl_A 24 PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHG--ASLYLPMEG-----LNCYRHAIAPLLFGADHPVLKQQRV 96 (397)
T ss_dssp CCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCC--CCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCE
T ss_pred CCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccc--cccCCCCCc-----hHHHHHHHHHHHhcCCcccccccce
Confidence 44578999999 6776554 4454432210222211 236888788 59999999999965433221356
Q ss_pred eEEEccCHHHHHHHHH--HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc------C
Q 012785 165 HIVVGTGSTQLFQAAL--YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK------D 228 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~--~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~------~ 228 (456)
+|++|+|+++++++++ ..++.+|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 172 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPES----GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQA 172 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTC----CEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCT
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCC----eEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCC
Confidence 8999999999999995 45578999 9999999999999999999999988776 3344432 3
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC------CC---CCCCCCcEEEecCccccCCC
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT------SI---TYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~------~~---~~~~~~~i~i~S~SK~~g~~ 291 (456)
+++++++++||||||.+++. +|+++|+++|+||+|.+..+. ++ ....+++++++||||.+|++
T Consensus 173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 252 (397)
T 3fsl_A 173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY 252 (397)
T ss_dssp TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCc
Confidence 56889999999999999872 788999999999999864432 11 13567899999999999999
Q ss_pred CceEEEEEE--eCHHHHHHHHHH----HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALV--KDMEVAKKMTKY----IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~~--~~~~~~~~l~~~----~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|+|+||+++ +++++++.+... ......+++.+.|.++..+|....-.. .+++++++.++.++++++.+.
T Consensus 253 G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~~~~~~~l~ 327 (397)
T 3fsl_A 253 GERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKA-----SWLKEVEEMRTRILAMRQELV 327 (397)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 346666544322 223456678899999988887210000 015678899999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|++.+ ++.+..+.+++ |+|++++ .+.+.++++++||.+.||. ||+++. ++
T Consensus 328 ~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~gi~v~~g~---------Ris~~~~~~ 383 (397)
T 3fsl_A 328 KVLSTEMPERNFDYLLNQRGM-------------FSYTGLS--AAQVDRLREEFGVYLIASG---------RMCVAGLNT 383 (397)
T ss_dssp HHHHHHCTTSCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHTTCEECCTTC---------EEEGGGCCT
T ss_pred HHHHhcCCCCCceeecCCceE-------------EEecCCC--HHHHHHHHHhCCEEECCCC---------eEEEEecCH
Confidence 9999874 46666666776 8998884 5668888999999999964 999987 88
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
+++++++++|++++
T Consensus 384 ~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 384 ANVQRVAKAFAAVM 397 (397)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhhC
Confidence 89999999999874
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=302.32 Aligned_cols=310 Identities=16% Similarity=0.198 Sum_probs=242.4
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.++.+|||+.|+|+++.++.+.+... ..+. . ...|++ .| ..++|++++++++. ++++|++|+|
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~-~~~~-~---~~~y~~-~~-----~~~l~~~la~~~~~------~~~~i~~~~g 86 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNID-EGIK-N---LGVYPD-VN-----YRRLNKSIENYLKL------KDIGIVLGNG 86 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHH-HHHH-G---GGSCCC-TT-----CHHHHHHHHHHHTC------CSCEEEEESS
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHH-HHHH-H---hcCCCC-cc-----HHHHHHHHHHHhCC------CcceEEEcCC
Confidence 45678999999988877666654322 1111 1 245755 45 59999999999953 4579999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc------cccc--CCCeEEEEcCCCCCCc
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK------RFNK--DGPYIELVTSPNNPDG 243 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~------~l~~--~~~~~i~v~~P~NPtG 243 (456)
+++++++++.++ | +|+++.|+|+.+...++..|.+++.++.|.+ .++. .+++++++++||||||
T Consensus 87 ~t~al~~~~~~~----d----~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~i~~p~nptG 158 (361)
T 3ftb_A 87 ASEIIELSISLF----E----KILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDDVDSVIIGNPNNPNG 158 (361)
T ss_dssp HHHHHHHHHTTC----S----EEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTTCSEEEEETTBTTTT
T ss_pred HHHHHHHHHHHc----C----cEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccCCCEEEEeCCCCCCC
Confidence 999999999887 6 9999999999999999999999998876643 2321 1278999999999999
Q ss_pred ccchH--------HhhhcCcEEEeeecCCCCCC---CC---CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH
Q 012785 244 SVRQS--------VVNRSGGILVHDLAYYWPQY---TS---ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM 309 (456)
Q Consensus 244 ~~~~~--------l~~~~~~~iI~De~y~~~~~---~~---~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l 309 (456)
.+++. +|+++|+++|+||+|.+..+ .+ .....+++++++|+||.+|++|+|+||+++.++++++.+
T Consensus 159 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~ 238 (361)
T 3ftb_A 159 GLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKI 238 (361)
T ss_dssp BCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHH
Confidence 99872 67799999999999985333 11 223457889999999999999999999993359999998
Q ss_pred HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCCCccccccc
Q 012785 310 TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS-VPELPSQFCTFLG 388 (456)
Q Consensus 310 ~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~g~~~~~~~ 388 (456)
..... +++++++.|.++.++|+ + .+++++.+++++++++.+.+.|++++.+. +.++.
T Consensus 239 ~~~~~--~~~~~~~~~~~~~~~l~---~---------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------- 296 (361)
T 3ftb_A 239 KAKQN--PWNINCFAEMAAINCLK---D---------TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPH-------- 296 (361)
T ss_dssp HTTSC--TTCSCHHHHHHHHHTSS---C---------HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCS--------
T ss_pred HhhCC--CCCCCHHHHHHHHHHhc---C---------HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCC--------
Confidence 87654 67899999999999887 1 57889999999999999999999886665 44433
Q ss_pred ccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 389 RAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++|+|++++. +.+.+.+.|.++||.++||..|+. +++++||+++ ++++++++++.|+++.
T Consensus 297 ------~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 297 ------ANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVE 358 (361)
T ss_dssp ------SSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred ------CeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 3378888875 667788888888999999999974 5789999995 6666666666666543
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=310.28 Aligned_cols=323 Identities=15% Similarity=0.090 Sum_probs=242.1
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE--EE
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI--VV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I--~~ 168 (456)
..+++|||+.|+| ++..++.+.+..... .. .....|.+..| .++||+++++++........++++| ..
T Consensus 39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a--~~--~~~~~y~~~~g-----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~ 109 (409)
T 4eu1_A 39 PAKRKVNLSIGVYRDDADQPFVLECVKQA--TL--GTNMDYAPVTG-----IASFVEEAQKLCFGPTCAALRDGRIASCQ 109 (409)
T ss_dssp CCSSCEECCCSSCCCTTSCCCCCHHHHTC--CC--CSCCCCCCTTC-----CHHHHHHHHHHHHCSSCHHHHTTCEEEEE
T ss_pred CCcCceeeeeeEEECCCCCEeecHHHHhc--Cc--cccccCCCCCC-----cHHHHHHHHHHHcCCCchhhccCceeeee
Confidence 4467899999998 776655444322211 11 12346877788 5999999999983211111114577 45
Q ss_pred ccCHHHHHHHHH---HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc------CCCe
Q 012785 169 GTGSTQLFQAAL---YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK------DGPY 231 (456)
Q Consensus 169 t~G~~~al~~~~---~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~------~~~~ 231 (456)
|.|++++++++. .++.++|| +|++++|+|+.+...++..|.+++.++. |.+.++. .+++
T Consensus 110 ~~~g~ga~~~~~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 185 (409)
T 4eu1_A 110 TLGGTGALRIGGDLLNRFVANCN----RIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSV 185 (409)
T ss_dssp ESHHHHHHHHHHHHGGGTSSSCC----EEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCE
T ss_pred cccchHHHHHHHHHHHHhcCCCC----EEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcE
Confidence 888888888754 45568889 9999999999999999999999988775 3344432 2456
Q ss_pred EEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCccccCCCCc
Q 012785 232 IELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~SK~~g~~G~ 293 (456)
++++++||||||.+++. +|+++|+++|+||+|.+..+.+ + ....+++|+++||||++|++|+
T Consensus 186 ~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 265 (409)
T 4eu1_A 186 ILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGH 265 (409)
T ss_dssp EEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGG
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccC
Confidence 77789999999999882 7899999999999999754432 1 1345789999999999999999
Q ss_pred eEEEE--EEeCHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 294 RIGWA--LVKDME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 294 RiG~l--~~~~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|+||+ ++++++ +++.++........+++.+.|.++..+|+...-.. ++.+++++.++.++++++.+.+.
T Consensus 266 riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 266 RCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTA-----LWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 666677 77777776666678889999999999988210000 01456788999999999999999
Q ss_pred HHhcCC---ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhH
Q 012785 368 VQKSGL---FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDEN 443 (456)
Q Consensus 368 L~~~~~---~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~ 443 (456)
|++.+. +.+..+++++ |+|++++ .+.+..+++++||.+.|| .||+++. ++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~ll~~~gv~v~p~---------~Ri~~~~~~~~~ 396 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGM-------------MAYTGLT--REQVELLRSEYHIYMTLN---------GRAAVSGLNSTN 396 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSS-------------EEECCCC--HHHHHHHHHHHCEECCTT---------CEEEGGGCCTTT
T ss_pred HHhcCCCCCcceecCCceE-------------EEEeCCC--HHHHHHHHHcCCEEEcCC---------CEEEEEecCHhh
Confidence 998752 5566677777 8998774 456777777899999995 2999986 8888
Q ss_pred HHHHHHHHHhhhC
Q 012785 444 YNLFVQRLSKILS 456 (456)
Q Consensus 444 i~~~l~~L~~~l~ 456 (456)
+++++++|+++++
T Consensus 397 i~~~~~~l~~~l~ 409 (409)
T 4eu1_A 397 VEYVSQAIHNVTK 409 (409)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998874
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=312.27 Aligned_cols=331 Identities=15% Similarity=0.199 Sum_probs=249.5
Q ss_pred CCeE-EecCCCCCCCch--hHhhhccccccccc-------C--ccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCcc
Q 012785 94 ERII-NVDHGDPTMYEK--YWQKVGDKTTIVIP-------G--WQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAI 160 (456)
Q Consensus 94 ~~~i-~l~~g~p~~~~~--~~~~~~~~~~~~~~-------~--~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~ 160 (456)
+++| +|++|.|+.+++ +.+.+. ....+.. . ......|++..| .++||++||+|+. .+|..+
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~l~~~~g~~~ 104 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLET-YKALGNDNDTGKANSSAIISMANYSNPQG-----DSAFIDALVGFFNRHYDWNL 104 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHH-HHHHHSCSCTTCCCCHHHHHHHSCCCTTC-----CHHHHHHHHHHHHHHHCCCC
T ss_pred chhhhccCCCCCCcccchHHHHHHH-HHHHHhccccccccchhhhhhhccCCCCC-----CHHHHHHHHHHHHhhcCCCC
Confidence 6789 999999998643 112211 1111222 1 111246888888 5999999999995 456666
Q ss_pred CCCceEEEccCHHHHHHHHHHHhcCCCCCC----------CcEEEEe-CCCCCChhhh------hhhcCCeEeeec----
Q 012785 161 TENHHIVVGTGSTQLFQAALYALSSQDASE----------PISVVSA-APYYSSYPSI------TDCVKSRLYKWA---- 219 (456)
Q Consensus 161 ~~~~~I~~t~G~~~al~~~~~~l~~~gd~~----------~~~Vlv~-~P~y~~~~~~------~~~~g~~~~~~~---- 219 (456)
. +++|++|+|+++++++++++++.+||.. ..+|+++ +|+|+.+... +...|.+++.++
T Consensus 105 ~-~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (444)
T 3if2_A 105 T-SENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGE 183 (444)
T ss_dssp C-GGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTE
T ss_pred C-HHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccc
Confidence 4 5799999999999999999998877400 0036664 9999999874 345577766554
Q ss_pred -------cCcccccc------CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCC----CCCCC-CC
Q 012785 220 -------GDAKRFNK------DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWP----QYTSI-TY 273 (456)
Q Consensus 220 -------~d~~~l~~------~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~----~~~~~-~~ 273 (456)
+|.+.++. .++++|++++||||||.+++. +|+++|+++|+||+|..+ .+.+. ..
T Consensus 184 ~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 263 (444)
T 3if2_A 184 EGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLN 263 (444)
T ss_dssp EEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCC
T ss_pred cCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccccc
Confidence 45555543 357899999999999999882 689999999999999852 11121 13
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH-
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF- 352 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~- 352 (456)
..+++++++||||. +++|+|+||++++ +++++.+.......+++++++.|.++..+++ .. ...++..+
T Consensus 264 ~~~~~i~~~S~sK~-~~~G~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~------~~~~~~~~~ 332 (444)
T 3if2_A 264 WDNNTILCFSLSKI-GLPGMRTGIIVAD-AKVIEAVSAMNAVVNLAPTRFGAAIATPLVA---ND------RIKQLSDNE 332 (444)
T ss_dssp CCTTEEEEEESTTT-TCGGGCCEEEECC-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH---TS------HHHHHHHHT
T ss_pred CCCCEEEEechhhc-cCCCCceEEEEEC-HHHHHHHHHHHHhccCCCChHHHHHHHHHHH---cC------chhHHHHHH
Confidence 35789999999996 7799999999996 9999999998887788999999999999998 33 12445554
Q ss_pred HHHHHHHHHHHHHHHHHh-cCC--ccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCC
Q 012785 353 TNHQMSTRWKQLRMAVQK-SGL--FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHF 426 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~-~~~--~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~f 426 (456)
+++.++++++.+.+.|.+ ++. +.+..+.+++ |+|++++. +.+.+.+.|+++||.++||+.|
T Consensus 333 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~ 399 (444)
T 3if2_A 333 IKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAI-------------FLWLWFKDLPISTLDLYERLKAKGTLIVPSEYF 399 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSS-------------EEEEEETTCSSCHHHHHHHHHHTTEECEEGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCceEecCCccE-------------EEEEEcCCCCCCHHHHHHHHHHCCeEEecchhh
Confidence 778899999999998876 342 4455566666 89998863 5677888889999999999998
Q ss_pred CCC---------CCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 427 GFS---------PKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 g~~---------~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..+ .+++||+++.+++++++++++|++++
T Consensus 400 ~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~ 437 (444)
T 3if2_A 400 FPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVV 437 (444)
T ss_dssp CTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 531 26899999889999999999999875
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=305.83 Aligned_cols=287 Identities=20% Similarity=0.291 Sum_probs=240.2
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
..|++..| .++||+++++++.. . .+++|++|+|+++++.+++.+++++|| +|+++.|+|+.+...+
T Consensus 57 ~~y~~~~g-----~~~l~~~la~~~~~----~-~~~~v~~~~g~~~a~~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~ 122 (375)
T 3op7_A 57 LNYGWIEG-----SPAFKKSVSQLYTG----V-KPEQILQTNGATGANLLVLYSLIEPGD----HVISLYPTYQQLYDIP 122 (375)
T ss_dssp CSSCCTTC-----CHHHHHHHHTTSSS----C-CGGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESSCTHHHHHH
T ss_pred cCCCCCCC-----hHHHHHHHHHHhcc----C-ChhhEEEcCChHHHHHHHHHHhcCCCC----EEEEeCCCchhHHHHH
Confidence 35777777 59999999998731 1 357999999999999999999999999 9999999999999999
Q ss_pred hhcCCeEeeeccC--------cccccc---CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC
Q 012785 209 DCVKSRLYKWAGD--------AKRFNK---DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 209 ~~~g~~~~~~~~d--------~~~l~~---~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
+..|.+++.++.+ .+.++. .++++|++++||||||.+++ ++|+++|+++|+||+|.+..+.
T Consensus 123 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~ 202 (375)
T 3op7_A 123 KSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL 202 (375)
T ss_dssp HHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS
T ss_pred HHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc
Confidence 9999998876643 344432 36789999999999999988 2789999999999999975443
Q ss_pred CCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 270 SIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 270 ~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
+.+ ...+++++++||||.+|++|+|+||++++ +++++.++......+++.+++.|.++...|+. .
T Consensus 203 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~ 270 (375)
T 3op7_A 203 DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAAN-HQVTDILRDYRDYTMICAGVFDDLVAQLALAH-----------Y 270 (375)
T ss_dssp CCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECC-HHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT-----------H
T ss_pred CCCchhhhcCCEEEEeEChhhcCCcccceEEEEeC-HHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc-----------c
Confidence 322 33578899999999999999999999995 99999999888777888999999999988872 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHH-HHHHHhCCEEeecC
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDC-ESFLKGNKILTRSG 423 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~-~~~l~~~gI~v~pg 423 (456)
++++++.++.++++++.+.+.|++.+.+.+..+.+++ +.|+.++. +...+ .++++++||.++||
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g 337 (375)
T 3op7_A 271 QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVS-------------TSFVKIAVDMPMEDFCLQLLQEHGVLLVPG 337 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSS-------------CEEEEECCSSCHHHHHHHHHHHHCEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeE-------------EEeEEcCCCCCHHHHHHHHHHhCCEEEeCh
Confidence 6788999999999999999999988777777777776 56666642 44444 44557999999999
Q ss_pred CCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 424 KHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 424 ~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
..|+. ++++||+++.+++++++++++|++++
T Consensus 338 ~~~~~-~~~iRi~~~~~~~~i~~~l~~l~~~l 368 (375)
T 3op7_A 338 NRFER-DGYVRLGFACEQETLIKGLEKLSQFL 368 (375)
T ss_dssp GGGTC-TTEEEECCCSCHHHHHHHHHHHHHHH
T ss_pred hhhCC-CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 99986 88999999888899999999999876
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=311.60 Aligned_cols=324 Identities=15% Similarity=0.085 Sum_probs=244.0
Q ss_pred CCCeEEecCCCC-CCCchhHhhhccccc--ccc-cCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccC--CCceE
Q 012785 93 GERIINVDHGDP-TMYEKYWQKVGDKTT--IVI-PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAIT--ENHHI 166 (456)
Q Consensus 93 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~--~~~-~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~--~~~~I 166 (456)
.+.+|||+.|.| ++..++++....... .+. ........|.+..| .++||+++++++. |.... .+++|
T Consensus 48 ~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G-----~~~lr~~ia~~l~--g~~~~~~~~~~i 120 (448)
T 3meb_A 48 NPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAG-----FPLFLEAAQFLMF--GKDSKAAQEGRI 120 (448)
T ss_dssp CTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTC-----CHHHHHHHHHHHH--CTTCHHHHTTCE
T ss_pred CCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcc-----hHHHHHHHHHHhc--CCCccccCcCcE
Confidence 345799999998 665444333221111 121 01112346888788 5999999999982 22211 14789
Q ss_pred EE--ccCHHHHHHH--HHHHhcCCCCCCCcEEEEeCCCCCChhhhhh----hcCCeEeeecc-Cc--------ccccc--
Q 012785 167 VV--GTGSTQLFQA--ALYALSSQDASEPISVVSAAPYYSSYPSITD----CVKSRLYKWAG-DA--------KRFNK-- 227 (456)
Q Consensus 167 ~~--t~G~~~al~~--~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~~~~~~-d~--------~~l~~-- 227 (456)
++ |+|+++++++ .+.+++.+|| +|++++|+|+.+...++ ..|.+++.++. |. +.++.
T Consensus 121 ~~~~t~ggt~al~l~~~~~~~~~~gd----~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l 196 (448)
T 3meb_A 121 ASCQSLSGTGSLHIGFEFLHLWMPKA----EFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDI 196 (448)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTC----CEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHHhCCCC----EEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHH
Confidence 99 9999999988 5556778999 99999999999999999 99999887766 33 33322
Q ss_pred ----CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCCC-------C---CCCCCCcEEEecCc
Q 012785 228 ----DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTS-------I---TYPADHDLMLFTVS 285 (456)
Q Consensus 228 ----~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~-------~---~~~~~~~i~i~S~S 285 (456)
.+++++++++||||||.+++ ++|+++|+++|+||+|.+..+.+ + ....+++|+++|||
T Consensus 197 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 276 (448)
T 3meb_A 197 QSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFS 276 (448)
T ss_dssp HHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECT
T ss_pred HhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEeccc
Confidence 24678889999999999987 27889999999999999754432 1 12357899999999
Q ss_pred cccCCCCceEEEE--EE--------eCH----HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 286 KSTGHAGTRIGWA--LV--------KDM----EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 286 K~~g~~G~RiG~l--~~--------~~~----~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
|.||++|+|+||+ ++ +++ ++++.+.......+.+++.+.|.++..+|....-.. ++.++++
T Consensus 277 K~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~-----~~~~~~~ 351 (448)
T 3meb_A 277 KNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQ-----MFYDNVK 351 (448)
T ss_dssp TTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHH-----HHHHHHH
T ss_pred ccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHH-----HHHHHHH
Confidence 9999999999998 77 545 677777776666777899999999999887210000 0135688
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CC------ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecC
Q 012785 352 FTNHQMSTRWKQLRMAVQKS--GL------FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~--~~------~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg 423 (456)
+++++++++|+.+.+.|+++ +. +....+++++ |+|+.++ .+.+..+++++||.+.||
T Consensus 352 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~--~~~~~~ll~~~gV~v~~G 416 (448)
T 3meb_A 352 EMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGM-------------FTFTGLT--PEHVDYLKEKWSIYLVKA 416 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEEECSG
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceE-------------EEecCCC--HHHHHHHHHhCCEEEeCC
Confidence 99999999999999999987 33 5555666776 8998884 566777778999999997
Q ss_pred CCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 424 KHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 424 ~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+ .|||++. +++++++++++|++++
T Consensus 417 ~--------gRis~a~~~~~~i~~~~~~l~~~l 441 (448)
T 3meb_A 417 G--------GRMSMCGLTESNCDYVAEAIHDAV 441 (448)
T ss_dssp G--------GEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred C--------cEEEEecCCHHHHHHHHHHHHHHH
Confidence 6 1999987 8889999999999876
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=295.28 Aligned_cols=314 Identities=18% Similarity=0.188 Sum_probs=245.9
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHHH
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~ 174 (456)
.|||+.|+++++.++.+.+.... .+.........|++..+ .+|++++++++.. +|.... +++|++|+|+++
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~y~~~~~------~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~ 103 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVA-TVDKIATELNRYPERDA------VELRDELAAYITKQTGVAVT-RDNLWAANGSNE 103 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHH-HHHHHGGGTTSCCCTTC------HHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHH-HHHhcccccccCCCccH------HHHHHHHHHhhhhcccCCCC-hHhEEECCChHH
Confidence 39999999987766555543221 12111111345777665 8999999999854 455543 578999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC------cccccc---C-CCeEEEEcCCCCCCcc
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD------AKRFNK---D-GPYIELVTSPNNPDGS 244 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d------~~~l~~---~-~~~~i~v~~P~NPtG~ 244 (456)
+++++++++.++|| +|++++|+|+.+...++..|.+++.++.| .+.++. . +++++++++||||||.
T Consensus 104 al~~~~~~l~~~gd----~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~ 179 (369)
T 3cq5_A 104 ILQQLLQAFGGPGR----TALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGD 179 (369)
T ss_dssp HHHHHHHHHCSTTC----EEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCC
T ss_pred HHHHHHHHhcCCCC----EEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCC
Confidence 99999999999999 99999999999999999999998877654 333432 2 6789999999999999
Q ss_pred cch-----HHhhhcCcEEEeeecCCCCCCC-C-C--CCCCC-CcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 245 VRQ-----SVVNRSGGILVHDLAYYWPQYT-S-I--TYPAD-HDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 245 ~~~-----~l~~~~~~~iI~De~y~~~~~~-~-~--~~~~~-~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
+++ ++++.+++++|+||+|.+..+. + . ....+ ++++++||||.+|++|+|+||++++ +++++.+.....
T Consensus 180 ~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 258 (369)
T 3cq5_A 180 VTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN-PAFIDAVMLVRL 258 (369)
T ss_dssp CCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC-THHHHHHHTTSC
T ss_pred CCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC-HHHHHHHHHcCC
Confidence 988 3788888999999999864321 1 1 12345 8899999999999999999999997 888888876654
Q ss_pred hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCC
Q 012785 315 LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQ 394 (456)
Q Consensus 315 ~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (456)
+++++++.|.++.++|+. .+++++.+++++++++.+.+.|++.+ +.+.++ +
T Consensus 259 --~~~~~~~~~~a~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~------------- 309 (369)
T 3cq5_A 259 --PYHLSALSQAAAIVALRH------------SADTLGTVEKLSVERVRVAARLEELG-YAVVPS-E------------- 309 (369)
T ss_dssp --TTCSCHHHHHHHHHHHHT------------HHHHHTHHHHHHHHHHHHHHHHHHHT-CEEECC-S-------------
T ss_pred --CCCCCHHHHHHHHHHhcC------------HHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCC-C-------------
Confidence 567999999999999972 45788899999999999999998754 444432 2
Q ss_pred CceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 395 PAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 395 ~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++|+|++++.+...+.+.|.++||.++|| + .++++||+++ +++++++++++|+++++
T Consensus 310 ~~~~~~~~~~~~~~l~~~l~~~gi~v~~~---~-~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 310 SNFVFFGDFSDQHAAWQAFLDRGVLIRDV---G-IAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp SSEEEEECCSSHHHHHHHHHHTTEECBCC---S-CTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCHHHHHHHHHHCCEEEEEC---C-CCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 23789888655667778888999999998 2 3689999996 78999999999998763
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=290.63 Aligned_cols=302 Identities=17% Similarity=0.231 Sum_probs=235.6
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
..+|+|+.|+++++.++.+.+... ..+.. .....|++. | .+++|++++++++.. .. ++++|++|+|++
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~-~~~~~--~~~~~y~~~-~-----~~~lr~~la~~~~~~--~~-~~~~v~~~~G~~ 86 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVF-RRLNS--DALRIYYDS-P-----DEELIEKILSYLDTD--FL-SKNNVSVGNGAD 86 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHH-HTCCG--GGGGSCCCS-S-----CHHHHHHHHHHHTCS--SC-CGGGEEEESSHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHH-HHhhh--hhhhcCCCC-c-----hHHHHHHHHHHcCCC--CC-CHHHEEEcCChH
Confidence 367999999998766665554322 11211 113457664 5 599999999999732 22 357999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc------cccccCCCeEEEEcCCCCCCcccch
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA------KRFNKDGPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~------~~l~~~~~~~i~v~~P~NPtG~~~~ 247 (456)
++++++++++ || +|+++ |+|+.+...++..|.+++.++.|. +.+ .+++++++++||||||.+++
T Consensus 87 ~al~~~~~~~---gd----~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l--~~~~~v~l~~p~nptG~~~~ 156 (335)
T 1uu1_A 87 EIIYVMMLMF---DR----SVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV--GEGDVVFIPNPNNPTGHVFE 156 (335)
T ss_dssp HHHHHHHHHS---SE----EEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC--CTTEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHh---CC----cEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc--CCCCEEEEeCCCCCCCCCCC
Confidence 9999999988 78 99999 999999999999999998777543 333 46789999999999999988
Q ss_pred H-----HhhhcCcEEEeeecCCCCCC---CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc
Q 012785 248 S-----VVNRSGGILVHDLAYYWPQY---TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG 319 (456)
Q Consensus 248 ~-----l~~~~~~~iI~De~y~~~~~---~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~ 319 (456)
. +++..| ++|+||+|.+... .......+++++++||||.+|++|+|+||++++ +++++++..... +++
T Consensus 157 ~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~--~~~ 232 (335)
T 1uu1_A 157 REEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRL--PFN 232 (335)
T ss_dssp HHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHSC--TTC
T ss_pred HHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC-HHHHHHHHHhcC--CCC
Confidence 3 666668 8999999984211 122234568999999999999999999999996 999999887754 578
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEE
Q 012785 320 VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAW 399 (456)
Q Consensus 320 ~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~ 399 (456)
++++.|.++.++|+. .+++++.+++++++++.+.+.|++.+ +.+. +.++ +|+|
T Consensus 233 ~~~~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~~~-------------~~~~ 285 (335)
T 1uu1_A 233 VSYVSQMFAKVALDH------------REIFEERTKFIVEERERMKSALREMG-YRIT-DSRG-------------NFVF 285 (335)
T ss_dssp SCHHHHHHHHHHHHT------------HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBC-CCCS-------------SEEE
T ss_pred cCHHHHHHHHHHhCC------------HHHHHHHHHHHHHHHHHHHHHHHHCC-cEEc-CCCC-------------eEEE
Confidence 999999999999982 35788889999999999999998874 4433 2333 3899
Q ss_pred eecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 400 LKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 400 ~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++++. +.+.+.+.|.++||.++| .++++||+++ +++++++++++|++++
T Consensus 286 ~~~~~~~~~~~~~~l~~~gi~v~~------~~~~iRis~~-~~~~i~~~~~~l~~~~ 335 (335)
T 1uu1_A 286 VFMEKEEKERLLEHLRTKNVAVRS------FREGVRITIG-KREENDMILRELEVFK 335 (335)
T ss_dssp EECCTHHHHHHHHHHHHHTEEEEE------ETTEEEEECC-CHHHHHHHHHHHHCC-
T ss_pred EECCCCCHHHHHHHHHHCCEEEEE------CCCeEEEEeC-CHHHHHHHHHHHHhhC
Confidence 99875 456677778889999999 2679999995 5678999999998763
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=324.81 Aligned_cols=322 Identities=15% Similarity=0.185 Sum_probs=253.8
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGST 173 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~ 173 (456)
++|||+.|+|++++++.+.+... ..+..+ ...|++.. .++++++++++.. +|.... +++|++|+|++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~-~~~~~~---~~~y~~~~-------~~l~~~la~~l~~~~g~~~~-~~~v~~~~g~~ 99 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIH-DYAEQL---VYGYTYAS-------DELLQAVLDWEKSEHQYSFD-KEDIVFVEGVV 99 (392)
Confidence 78999999998887765554322 112121 23566542 8999999999854 454443 57999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc---------Ccccccc----CCCeEEEEcCCCC
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---------DAKRFNK----DGPYIELVTSPNN 240 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~---------d~~~l~~----~~~~~i~v~~P~N 240 (456)
+++.++++++..+|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .+++++++++|||
T Consensus 100 ~a~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~n 175 (392)
T 3b1d_A 100 PAISIAIQAFTKEGE----AVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHN 175 (392)
Confidence 999999999999999 9999999999999999999988876554 3444433 3568888999999
Q ss_pred CCcccch--------HHhhhcCcEEEeeecCCCCCC-----CCCCC--C--CCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 241 PDGSVRQ--------SVVNRSGGILVHDLAYYWPQY-----TSITY--P--ADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 241 PtG~~~~--------~l~~~~~~~iI~De~y~~~~~-----~~~~~--~--~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
|||.+++ ++|+++|+++|+||+|.+..+ .++.. . .+++++++||||.+|++|+|+||++++++
T Consensus 176 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 255 (392)
T 3b1d_A 176 PGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENP 255 (392)
Confidence 9999987 278899999999999986332 12221 1 56899999999999999999999999745
Q ss_pred HHHHHHHHHHhhcc-CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCCC
Q 012785 304 EVAKKMTKYIELNT-IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELPS 381 (456)
Q Consensus 304 ~~~~~l~~~~~~~~-~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~g 381 (456)
++++.+.......+ .++++++|.++.++|+ ++ ++++++.++.++++++.+.+.|++ ++.+.+.++.|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 324 (392)
T 3b1d_A 256 TLCAQFKHQQLVNNHHEVSSLGYIATETAYR---YG--------KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQG 324 (392)
Confidence 68888888766544 3578899999988887 22 467888999999999999999987 56677777777
Q ss_pred cccccccccCCCCCceEEeecCc---cHHHHHHHH-HhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFL-KGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l-~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
++ |+|++++. +...+.+.| +++||.++||..|+. .++++||+++.+++++++++++|+++++
T Consensus 325 ~~-------------~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 325 TY-------------LIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 77 78888863 345566666 489999999999973 5789999998888999999999998764
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=300.74 Aligned_cols=322 Identities=15% Similarity=0.100 Sum_probs=239.9
Q ss_pred CCCCeEEecCCCC-C----CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCce
Q 012785 92 GGERIINVDHGDP-T----MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHH 165 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~----~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~ 165 (456)
.++++|||+.|+| + ..+++.+.+... ..+.. ......|.+..| .++||+++++++. ..|..+. +++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~-~~~~~-~~~~~~y~~~~g-----~~~lr~~la~~~~~~~~~~~~-~~~ 99 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQ-RIANN-SSLNHEYLPILG-----LAEFRTCASRLALGDDSPALQ-EKR 99 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHH-HHHTC-TTCCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHH-TTC
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHH-HhhhC-hhhccCCCCCCC-----CHHHHHHHHHHHhcCCCCccC-CCc
Confidence 4567899999986 2 122333443221 11111 112345877777 5999999999994 3343333 468
Q ss_pred EEE--ccCHHHHHHHHHH--HhcCCC-----CCCCcEEEEeCCCCCChhhhhhhcCCe-Eeeecc--------Ccccccc
Q 012785 166 IVV--GTGSTQLFQAALY--ALSSQD-----ASEPISVVSAAPYYSSYPSITDCVKSR-LYKWAG--------DAKRFNK 227 (456)
Q Consensus 166 I~~--t~G~~~al~~~~~--~l~~~g-----d~~~~~Vlv~~P~y~~~~~~~~~~g~~-~~~~~~--------d~~~l~~ 227 (456)
|++ |+|++++++++++ .++.+| | +|+++.|+|+.+...++..|.+ ++.++. |.+.++.
T Consensus 100 v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~ 175 (412)
T 1ajs_A 100 VGGVQSLGGTGALRIGAEFLARWYNGTNNKDT----PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS 175 (412)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCS----CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCcCcCCCCC----eEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHH
Confidence 999 9999999999965 445788 8 9999999999999999999999 887765 3333332
Q ss_pred ------CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-------CCC---CCCCCcEEEec
Q 012785 228 ------DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-------SIT---YPADHDLMLFT 283 (456)
Q Consensus 228 ------~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-------~~~---~~~~~~i~i~S 283 (456)
.+++++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++|+++|
T Consensus 176 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 255 (412)
T 1ajs_A 176 DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQS 255 (412)
T ss_dssp HHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEe
Confidence 15678888999999999987 2788999999999999875443 121 23578999999
Q ss_pred CccccCCCCceEEEEEE---eCHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 284 VSKSTGHAGTRIGWALV---KDME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~---~~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
|||.+|++|+|+||+++ + ++ +++.+.........+++++.|.++.++|+...... .+++++++.+++
T Consensus 256 ~sK~~~~~G~riG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-----~~~~~~~~~~~~ 329 (412)
T 1ajs_A 256 FSKNFGLYNERVGNLTVVAKE-PDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFH-----EWTGNVKTMADR 329 (412)
T ss_dssp CTTTSCCGGGCEEEEEEECSS-HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHH-----HHHHHHHHHHHH
T ss_pred cccccCCCCcceEEEEEecCC-HHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhH-----HHHHHHHHHHHH
Confidence 99999988999999999 5 76 44545554333444579999999999997210000 013578899999
Q ss_pred HHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeE
Q 012785 357 MSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYV 433 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~i 433 (456)
++++++.+.+.|++++ .+.+..+.+++ |+|++++ .+.+..+++++||.++|+ +
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~gv~v~~~---------~ 385 (412)
T 1ajs_A 330 ILSMRSELRARLEALKTPGTWNHITDQIGM-------------FSFTGLN--PKQVEYLINQKHIYLLPS---------G 385 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHCCSS-------------EEECCCC--HHHHHHHHHTTCEECCTT---------S
T ss_pred HHHHHHHHHHHHHhhCCCCCeeEEcCCCce-------------EEEeCCC--HHHHHHHHHhCCEEecCC---------c
Confidence 9999999999999875 35666666776 8998775 567778888999999984 4
Q ss_pred EEEecC-ChhHHHHHHHHHHhhh
Q 012785 434 RISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 434 Ris~~~-~~e~i~~~l~~L~~~l 455 (456)
||+++. +++++++++++|++++
T Consensus 386 Ris~~~~~~~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 386 RINMCGLTTKNLDYVATSIHEAV 408 (412)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred EEEeeeCCHHHHHHHHHHHHHHH
Confidence 999985 8999999999999876
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=301.61 Aligned_cols=321 Identities=15% Similarity=0.123 Sum_probs=237.2
Q ss_pred CCCeEEecCCC---CCC--CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 93 GERIINVDHGD---PTM--YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 93 ~~~~i~l~~g~---p~~--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
++++|||+.|+ |+. ++++.+.+... ..+... ....|++..| .++||+++++++...+....++++|+
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~lr~~la~~~~~~~~~~~~~~~v~ 96 (396)
T 2q7w_A 25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQ-YLLENE--TTKNYLGIDG-----IPEFGRCTQELLFGKGSALINDKRAR 96 (396)
T ss_dssp ---CEESSCCSCCCTTSCCCCCHHHHHHHH-HHHHHC--CCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCCceecccccccCCCCCccCcHHHHHHHH-hhcCcc--cccCCCCCCC-----CHHHHHHHHHHHhcCCCCccccccEE
Confidence 45789999998 333 33343443221 111111 1335877777 59999999999954332211356898
Q ss_pred E--ccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc----C--C
Q 012785 168 V--GTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK----D--G 229 (456)
Q Consensus 168 ~--t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~----~--~ 229 (456)
+ |+|++++++++++++. .+|| +|+++.|+|+.+...++..|.+++.++. |.+.++. . +
T Consensus 97 ~~~~~g~~~a~~~~~~~~~~~~~gd----~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 172 (396)
T 2q7w_A 97 TAQTPGGTGALRVAADFLAKNTSVK----RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAG 172 (396)
T ss_dssp EEEESHHHHHHHHHHHHHHHHSCCC----EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTT
T ss_pred EEecccchhhHHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCC
Confidence 8 9999999999998763 6899 9999999999999999999999887776 3334422 1 3
Q ss_pred CeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC------CCC---CCCCCcEEEecCccccCCCC
Q 012785 230 PYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT------SIT---YPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~------~~~---~~~~~~i~i~S~SK~~g~~G 292 (456)
++++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++++++||||.+|++|
T Consensus 173 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 252 (396)
T 2q7w_A 173 DVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYN 252 (396)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccc
Confidence 578888999999999987 2788999999999999875442 121 12478999999999999999
Q ss_pred ceEEEEEE--eCH----HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhh-CCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 293 TRIGWALV--KDM----EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVS-DSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 293 ~RiG~l~~--~~~----~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
+|+||+++ +++ ++++.+.........+++++.|.++.++|+... .. .+++++++.++.++++++.+.
T Consensus 253 ~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~------~~~~~~~~~~~~~~~~~~~l~ 326 (396)
T 2q7w_A 253 ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRA------IWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHH------HHHHHHHHC-CHHHHHHHHHH
T ss_pred cccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 346 455555554443445569999999999887210 00 014678889999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|++.+ .+.+..|.+++ |+|++++ .+.+.++++++||.+.|| +||+++. ++
T Consensus 327 ~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~gv~v~~~---------~Ris~~~~~~ 382 (396)
T 2q7w_A 327 NTLQEKGANRDFSFIIKQNGM-------------FSFSGLT--KEQVLRLREEFGVYAVAS---------GRVNVAGMTP 382 (396)
T ss_dssp HHHHHTTCCSCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCTT---------CEEEGGGCCT
T ss_pred HHHHhcCCCCCcceecCCCce-------------EEEecCC--HHHHHHHHHhcCeeecCC---------ceEEEeecCH
Confidence 9999875 36666667777 8898875 456888888999999984 5999986 89
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
+++++++++|++++
T Consensus 383 e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 383 DNMAPLCEAIVAVL 396 (396)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999874
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=301.29 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=230.5
Q ss_pred CCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 94 ERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 94 ~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.+.|||++| |++..++ +.++++.. ..+..+.. ..|.+..| .++||+++++++....... .....+.
T Consensus 44 ~~kinLgvG~y~d~~g~~~vl~~Vk~A~~-~~~~~~~~--~~Y~p~~G-----~p~lr~aia~~~~g~~~~~-~~~~~~q 114 (420)
T 4h51_A 44 GPKANLVIGAYRDEQGRPYPLRVVRKAEQ-LLLDMNLD--YEYLPISG-----YQPFIDEAVKIIYGNTVEL-ENLVAVQ 114 (420)
T ss_dssp SSCEECCSCCCBCTTSCBCCCHHHHHHHH-HHHHTTCC--CCCCCTTC-----CHHHHHHHHHHHHC---CG-GGEEEEE
T ss_pred CCCEEeecCcccCCCCCCCCCHHHHHHHH-HHhcCCCC--CCCCCcCC-----hHHHHHHHHHHhcCCCccc-cccceee
Confidence 347999999 4444333 33443321 22223321 25999999 4999999999873211111 1123456
Q ss_pred ccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEee-ec--------cCccccc------cCC
Q 012785 169 GTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYK-WA--------GDAKRFN------KDG 229 (456)
Q Consensus 169 t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~-~~--------~d~~~l~------~~~ 229 (456)
|.|++.++..++..+ .++|| +|++++|+|++|..+++..|.+.+. ++ +|.+++. ..+
T Consensus 115 t~ggtga~~~a~~~l~~~~~~pgd----~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 190 (420)
T 4h51_A 115 TLSGTGAVSLGAKLLTRVFDAETT----PIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDG 190 (420)
T ss_dssp EEHHHHHHHHHHHHHTTTSCTTTS----CEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSS
T ss_pred ecCchHHHHHHHHHHHHhcCCCCC----EEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCC
Confidence 889998887776655 46899 9999999999999999999987542 21 2333332 235
Q ss_pred CeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCCC----------CCCCCCcEEEecCccccCCC
Q 012785 230 PYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTSI----------TYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~~----------~~~~~~~i~i~S~SK~~g~~ 291 (456)
++++++++||||||.++++ +|+++++++|+||+|.+..+... ....++++++.||||.|+++
T Consensus 191 ~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 270 (420)
T 4h51_A 191 SVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLY 270 (420)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG
T ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccc
Confidence 6788899999999999993 78999999999999997544221 13456899999999999999
Q ss_pred CceEEEEEEeCH------HHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALVKDM------EVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~~~~~------~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|+|+||++++.+ .+...+......+..+++...|.++..++....-. .+++++++.++++++++|+.+.
T Consensus 271 G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~-----~~~~~~~~~m~~r~~~~R~~l~ 345 (420)
T 4h51_A 271 SERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELR-----KEWEAELSAMAERIRTMRRTVY 345 (420)
T ss_dssp GGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998732 22333444555567888999999999988731110 1235678899999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|++.+ .|....+++|| |.|+.++ .+++ ++|+++||.+.||. |||++. ++
T Consensus 346 ~~L~~~g~~~~~~~i~~q~Gm-------------F~~~gls--~e~v-~~L~e~~Vy~~~~g---------Ris~Agl~~ 400 (420)
T 4h51_A 346 DELLRLQTPGSWEHVINQIGM-------------FSFLGLS--KAQC-EYCQNHNIFITVSG---------RANMAGLTH 400 (420)
T ss_dssp HHHHHTTCSSCCTHHHHCCSS-------------EEECCCC--HHHH-HHHHHTTEECCTTC---------EEEGGGCCH
T ss_pred HHHHHhCCCCCCCeecCCCce-------------EEecCcC--HHHH-HHHHhCCEEEcCCC---------EEEeccCCH
Confidence 9999864 24444455566 9998884 3444 57889999999853 999987 99
Q ss_pred hHHHHHHHHHHhhhC
Q 012785 442 ENYNLFVQRLSKILS 456 (456)
Q Consensus 442 e~i~~~l~~L~~~l~ 456 (456)
++++.++++|.++++
T Consensus 401 ~ni~~~a~aI~~vvr 415 (420)
T 4h51_A 401 ETALMLAQTINDAVR 415 (420)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=295.48 Aligned_cols=322 Identities=12% Similarity=0.114 Sum_probs=238.6
Q ss_pred CCCCeEEecCCCC-CC----CchhHhhhccccc-ccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCc
Q 012785 92 GGERIINVDHGDP-TM----YEKYWQKVGDKTT-IVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENH 164 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~----~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~ 164 (456)
.+.++|||+.|+| +. .+++.+.+... . .+..+ ....|++..| .++||+++++++.. .|..+. ++
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~-~~~~~~~--~~~~y~~~~g-----~~~lr~~ia~~~~~~~~~~~~-~~ 97 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEK-LIHNDSS--YNHEYLGITG-----LPSLTSNAAKIIFGTQSDALQ-ED 97 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHH-HHHTCTT--CCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHH-TT
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHH-hhhcCcc--cccCCCCCCC-----cHHHHHHHHHHHhcCCCCCCC-cc
Confidence 4567899999987 32 22333433221 1 12211 1235877778 59999999999953 443333 56
Q ss_pred eEEE--ccCHHHHHHHHH--HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-C-------cccccc----C
Q 012785 165 HIVV--GTGSTQLFQAAL--YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-D-------AKRFNK----D 228 (456)
Q Consensus 165 ~I~~--t~G~~~al~~~~--~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d-------~~~l~~----~ 228 (456)
+|++ |+|+++++++++ ..++.+|| +|++++|+|+.+...++..|.+++.++. | .+.++. .
T Consensus 98 ~i~~~~t~g~~~a~~~~~~~~~~~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 98 RVISVQSLSGTGALHISAKFFSKFFPDK----LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred eEEEEeccchHhHHHHHHHHHHHhCCCC----EEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC
Confidence 8999 999999999984 34456899 9999999999999999999999887765 2 333322 2
Q ss_pred --CCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC-------CCC---CCCC---CcEEEecCc
Q 012785 229 --GPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT-------SIT---YPAD---HDLMLFTVS 285 (456)
Q Consensus 229 --~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~-------~~~---~~~~---~~i~i~S~S 285 (456)
+..++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+ ++++++|||
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 253 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA 253 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccC
Confidence 2345566999999999987 2688999999999999864332 221 1234 899999999
Q ss_pred cccCCCCceEEEEE--E----eCHH----HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 286 KSTGHAGTRIGWAL--V----KDME----VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 286 K~~g~~G~RiG~l~--~----~~~~----~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
|.+|++|+|+||++ + ++++ +++.+.........+++.+.|.++.++|+...-.. .+++++++.++
T Consensus 254 K~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-----~~~~~~~~~~~ 328 (412)
T 1yaa_A 254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTE-----QWHKDMVTMSS 328 (412)
T ss_dssp TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHH-----HHHHHHHHHHH
T ss_pred CCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHH-----HHHHHHHHHHH
Confidence 99997899999998 7 1366 78888775554556679999999999987210000 01357899999
Q ss_pred HHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCe
Q 012785 356 QMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~ 432 (456)
+++++++.+.+.|++++ .+.+..+.+++ |+|++++ .+.+..+++++||.+.| +
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~gi~v~~---------~ 384 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGM-------------FSFTGLT--PQMVKRLEETHAVYLVA---------S 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCT---------T
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeeeccCceE-------------EEeeCCC--HHHHHHHHHhCCEEecc---------C
Confidence 99999999999999875 36666677777 8898774 45677778889999987 3
Q ss_pred EEEEecC-ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
+||+++. +++++++++++|++++
T Consensus 385 ~Ris~~~~~~~~i~~~~~~l~~~~ 408 (412)
T 1yaa_A 385 GRASIAGLNQGNVEYVAKAIDEVV 408 (412)
T ss_dssp SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred cEEEEccCCHhHHHHHHHHHHHHH
Confidence 6999986 8999999999998875
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=292.69 Aligned_cols=319 Identities=17% Similarity=0.136 Sum_probs=237.2
Q ss_pred CCCCeEEecCCCC---CC--CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDP---TM--YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p---~~--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.++.+|||+.|+| +. ++++.+.+... ..+... ....|++..| .++||+++++++...+. ++++|
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~-~~~~~~--~~~~y~~~~g-----~~~lr~~la~~~~~~~~---~~~~v 92 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQ-RMLETE--TTKTYAGLSG-----EPEFQKAMGELILGDGL---KSETT 92 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHH-HHHHHC--CCCCCCCSSC-----CHHHHHHHHHHHHGGGC---CGGGE
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHH-HhcCCc--ccCCCCCCCC-----cHHHHHHHHHHHhCCCC---CcccE
Confidence 4567899999985 22 33344443221 111111 2345877777 59999999999843222 35789
Q ss_pred EE--ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc--------Ccccccc----C--
Q 012785 167 VV--GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG--------DAKRFNK----D-- 228 (456)
Q Consensus 167 ~~--t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~--------d~~~l~~----~-- 228 (456)
++ |+|++++++++++++.. +|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .
T Consensus 93 ~~~~~~g~~~a~~~~~~~~~~~~~gd----~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 168 (394)
T 2ay1_A 93 ATLATVGGTGALRQALELARMANPDL----RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK 168 (394)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT
T ss_pred EEEecCCchhHHHHHHHHHHhcCCCC----EEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCC
Confidence 98 99999999999988754 898 9999999999999999999999887776 3333322 1
Q ss_pred CCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCC------CCC---CCCCCcEEEecCccccCCC
Q 012785 229 GPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYT------SIT---YPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~------~~~---~~~~~~i~i~S~SK~~g~~ 291 (456)
+++++++++||||||.+++ ++|+++|+++|+||+|.+..+. ++. ...+++++++||||.+|++
T Consensus 169 ~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 248 (394)
T 2ay1_A 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc
Confidence 3577888999999999987 2788999999999999975442 121 2246789999999999999
Q ss_pred CceEEEEEE--eCHHHHHHH----HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALV--KDMEVAKKM----TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 292 G~RiG~l~~--~~~~~~~~l----~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
|+|+||+++ +++++++.+ .........+++++.|.++.++|+...... .+++++++++++++++++.+.
T Consensus 249 G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~-----~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 249 RERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRA-----DWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 347655443 333333445569999999999887310000 014678899999999999999
Q ss_pred HHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Ch
Q 012785 366 MAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RD 441 (456)
Q Consensus 366 ~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~ 441 (456)
+.|++++ .+.+..+.+++ |+|++++ .+.+.++++++||.+.|| +||+++. ++
T Consensus 324 ~~L~~~~~~~~~~~~~~~~g~-------------~~~~~~~--~~~~~~~l~~~gi~v~~~---------~Ris~~~~~~ 379 (394)
T 2ay1_A 324 GELRDLSGSDRFGFVAEHRGM-------------FSRLGAT--PEQVKRIKEEFGIYMVGD---------SRINIAGLND 379 (394)
T ss_dssp HHHHHHHTSSTTTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCTT---------CEEEGGGCCT
T ss_pred HHHHhcCCCCCeeEEcCCceE-------------EEeeCCC--HHHHHHHHHhCCEEecCC---------CeEEeecCCH
Confidence 9998864 35555566666 8998885 356788888999999984 4999975 89
Q ss_pred hHHHHHHHHHHhh
Q 012785 442 ENYNLFVQRLSKI 454 (456)
Q Consensus 442 e~i~~~l~~L~~~ 454 (456)
+++++++++|+++
T Consensus 380 ~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 380 NTIPILARAIIEV 392 (394)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc
Confidence 9999999999876
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=274.60 Aligned_cols=318 Identities=11% Similarity=0.062 Sum_probs=239.2
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
.++.+|||+.|+| .+++++.+.+... ..+.........|....| .+++++++++++.. .| .+++++|
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g-----~~~~~~~l~~~la~~~g-----~~~v~~~ 109 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQ-DALEKYGTGCAGSRFLNG-----TLDIHVELEEKLSAYVG-----KEAAILF 109 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHH-HHHHHHCSCCCSBTTTTC-----CCHHHHHHHHHHHHHHT-----CSEEEEE
T ss_pred CCceEEEeecccccCCCCCHHHHHHHH-HHHHHcCCCCCCcCcccC-----CcHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 3457899999998 5534444443222 112221111234566667 47888888887743 33 2589999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc---C----CCeEEEEcCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK---D----GPYIELVTSPNNP 241 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~---~----~~~~i~v~~P~NP 241 (456)
+|+++++.++++++.++|| .|++++|+|+.+...++..|.+++.++. |.+.++. . +++++++++||||
T Consensus 110 ~ggt~a~~~~~~~~~~~gd----~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~np 185 (398)
T 3a2b_A 110 STGFQSNLGPLSCLMGRND----YILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSM 185 (398)
T ss_dssp SSHHHHHHHHHHHSSCTTC----EEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTT
T ss_pred CCHHHHHHHHHHHHhCCCC----EEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 9999999999999999999 9999999999999999999999988875 5555532 1 6789999999999
Q ss_pred Ccccch-----HHhhhcCcEEEeeecCCCCCC----CCCC---CCCCC-cEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TSIT---YPADH-DLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~~~---~~~~~-~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++ ++|+++|+++|+||+|....+ .++. ...++ +++++||||.++++| ||++++ +++++.
T Consensus 186 tG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~-~~~~~~ 261 (398)
T 3a2b_A 186 EGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGD-ADVIDF 261 (398)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEEC-HHHHHH
T ss_pred CCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeC-HHHHHH
Confidence 999987 389999999999999975322 1111 12345 799999999999778 999996 999998
Q ss_pred HHHH-HhhccCcCChHHHHH-HHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 309 MTKY-IELNTIGVSKDSQLR-AAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 309 l~~~-~~~~~~~~s~~~q~~-a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+... ......+.+.+.|.+ +.++|+. .+++++.++.++++++.+.+.|++.+ +.+..+.
T Consensus 262 l~~~~~~~~~~~~~~~~~~a~~~~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~------ 322 (398)
T 3a2b_A 262 LKHNARSVMFSASMTPASVASTLKALEI------------IQNEPEHIEKLWKNTDYAKAQLLDHG-FDLGATE------ 322 (398)
T ss_dssp HHHHCHHHHSSBCCCHHHHHHHHHHHHH------------HHHCTHHHHHHHHHHHHHHHHHHHTT-CCBCSCC------
T ss_pred HHHhcccceecCCCCHHHHHHHHHHHHH------------HhhCHHHHHHHHHHHHHHHHHHHhcC-CCcCCCC------
Confidence 8875 333455566677764 5577763 23456788899999999999999873 4444433
Q ss_pred ccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 387 LGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++|+|+.++. +...+.+.|.++||.++||..|+. .++++||+++. +++++++++++|++++
T Consensus 323 --------g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l 389 (398)
T 3a2b_A 323 --------SPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVF 389 (398)
T ss_dssp --------SSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred --------CCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 3379999874 456677778888999999998853 36899999985 8999999999999875
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=268.12 Aligned_cols=319 Identities=11% Similarity=0.063 Sum_probs=225.9
Q ss_pred EEecCCCCCCCchhHhhhccccccc-ccCccccccccCCCCcccCCCH---HHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 97 INVDHGDPTMYEKYWQKVGDKTTIV-IPGWQSLSYFSDVRNLCWFLEP---EFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 97 i~l~~g~p~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~~G~~~~~~~---~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
..++.++|++.+++.+........- ..+......|+. .| .+ +|+++++++++. +++++++|+
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~-----~~~~~~l~~~ia~~~g~--------~~~i~~~~g 86 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LG-----NPTVSNLEGKIAFLEKT--------EACVATSSG 86 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TC-----CHHHHHHHHHHHHHHTC--------SEEEEESSH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-Cc-----ChHHHHHHHHHHHHhCC--------CcEEEeCCh
Confidence 4688999999887655443211110 011111234766 44 36 899999999863 367777777
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcc
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGS 244 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~ 244 (456)
++++.+++.+++++|| +|++++|+|+.+.. .++..|.+++.++. |.+.++. .++++|++++||||||.
T Consensus 87 ~~ai~~~~~~l~~~gd----~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~ 162 (404)
T 1e5e_A 87 MGAIAATVLTILKAGD----HLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLK 162 (404)
T ss_dssp HHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred HHHHHHHHHHHhCCCC----EEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCc
Confidence 8999999999999999 99999999999888 78888999988876 5555543 36799999999999999
Q ss_pred cch-----HHhhh-cCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccccCCCCceE-EEEEEeCHHHHH-HHHHHHhh
Q 012785 245 VRQ-----SVVNR-SGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAK-KMTKYIEL 315 (456)
Q Consensus 245 ~~~-----~l~~~-~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~-~l~~~~~~ 315 (456)
+++ ++|++ +|+++|+||+|.+..+ .++ ..+++++++|+||.++.+|+|+ ||++++ +++++ ++......
T Consensus 163 v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~--~~~~di~~~S~sK~~~~~g~ri~G~~~~~-~~~~~~~l~~~~~~ 239 (404)
T 1e5e_A 163 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV--DFGVDVVVHSATKYINGHTDVVAGLICGK-ADLLQQIRMVGIKD 239 (404)
T ss_dssp CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG--GGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTCCCC
T ss_pred ccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc--ccCCEEEEEcCccccCCCCCCeEEEEEEC-HHHHHHHHHHHHHh
Confidence 987 48999 9999999999997543 223 3478999999999999999998 999997 77777 77776554
Q ss_pred c-cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCC----CCcccccccc
Q 012785 316 N-TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PEL----PSQFCTFLGR 389 (456)
Q Consensus 316 ~-~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~----~g~~~~~~~~ 389 (456)
. ..+.+++.|.++.+.|+. +....+...++.+.+.+.|++.+.+.. ..+ ..++ .+...
T Consensus 240 ~~g~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~-~~~~~ 303 (404)
T 1e5e_A 240 ITGSVISPHDAWLITRGLST---------------LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGH-DIAKK 303 (404)
T ss_dssp CCCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTH-HHHHH
T ss_pred CCCCCCCHHHHHHHHHhHhH---------------HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccH-HHHHh
Confidence 4 456889999988888762 223344455666777777776542210 000 0011 00000
Q ss_pred cCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC--------------------------CCCeEEEEecCChhH
Q 012785 390 AFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF--------------------------SPKYVRISMLDRDEN 443 (456)
Q Consensus 390 ~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~--------------------------~~~~iRis~~~~~e~ 443 (456)
.....++|+.+++++..+.+.+++.+.|| +.+|..||. .++++|||++. |+
T Consensus 304 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~ 380 (404)
T 1e5e_A 304 QMRMYGSMITFILKSGFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--ED 380 (404)
T ss_dssp HCSSCCSEEEEEETTHHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SC
T ss_pred hCCCCceEEEEEeCCCHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CC
Confidence 00112455555887544667888999999 666665651 26899999976 78
Q ss_pred HHHHHHHHHhhh
Q 012785 444 YNLFVQRLSKIL 455 (456)
Q Consensus 444 i~~~l~~L~~~l 455 (456)
+++++++|++++
T Consensus 381 ~~~li~~l~~al 392 (404)
T 1e5e_A 381 ADELIADFKQGL 392 (404)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888765
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=255.15 Aligned_cols=282 Identities=13% Similarity=0.073 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHH-hcCccCCCc-eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKV-VGNAITENH-HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~-~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~ 218 (456)
.++++++++++.. .|. +++ +|++|+|+++++.+++.+++.+|| +|++++|+|+. +...++..|.+++.+
T Consensus 66 ~~~~~~~~~~la~~~g~---~~~~~v~~t~g~t~al~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v 138 (393)
T 1vjo_A 66 LALMDEIQSLLRYVWQT---ENPLTIAVSGTGTAAMEATIANAVEPGD----VVLIGVAGYFGNRLVDMAGRYGADVRTI 138 (393)
T ss_dssp HHHHHHHHHHHHHHHTC---CCSCEEEESSCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCC---CCCcEEEEeCchHHHHHHHHHhccCCCC----EEEEEcCChhHHHHHHHHHHcCCceEEE
Confidence 5677777776643 343 346 899999999999999999999999 99999999999 888899999999887
Q ss_pred cc------Ccccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 219 AG------DAKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 219 ~~------d~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
+. |.+.++. . +++++++++|+||||.+++ ++|+++|+++|+||+|... ..++. ...+.+++++
T Consensus 139 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g-~~~~~~~~~~~di~~~ 217 (393)
T 1vjo_A 139 SKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLG-GVPIFLDAWGVDLAYS 217 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTT-TSCCCTTTTTCSEEEC
T ss_pred ecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCcccc-CcCCcccccCccEEEE
Confidence 74 3444432 2 6789999999999999977 4899999999999999832 22221 2346689999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHH----H---------------hhccC-cCChHHHHHHHHHHHhhhCCCCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKY----I---------------ELNTI-GVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~----~---------------~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
|+||.++.+| |+||++++ +++++.+... . ..... +.+.+.|.++.++|+.+.
T Consensus 218 s~sK~l~~~~-~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~------ 289 (393)
T 1vjo_A 218 CSQKGLGCSP-GASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA------ 289 (393)
T ss_dssp CSSSTTCSCS-SCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH------
T ss_pred cCcccccCCC-ceEEEEEC-HHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHH------
Confidence 9999998777 99999997 8888877532 0 01233 778899999999887421
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-CEE
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-KIL 419 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-gI~ 419 (456)
+.++++.+++++++++.+.+.|++. ++.+..+.+.. .++++++.++. +.+.+.+.|.++ ||.
T Consensus 290 ----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 354 (393)
T 1vjo_A 290 ----QEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYR----------LPTLTTVCIPDGVDGKAVARRLLNEHNIE 354 (393)
T ss_dssp ----HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGB----------CSSEEEEECCTTCCHHHHHHHHHHHHCEE
T ss_pred ----HccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCcccc----------CCcEEEEEcCCCCCHHHHHHHHHhhCCEE
Confidence 3357788999999999999999987 45665554311 12367887752 456677777766 999
Q ss_pred eecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l~ 456 (456)
++||..|.. ++++||++ + .+++++++++++|+++++
T Consensus 355 v~~g~~~~~-~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 355 VGGGLGELA-GKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp CEECCGGGT-TTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EecCccccC-CCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 999997753 78999994 3 366789999999999874
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=256.08 Aligned_cols=317 Identities=11% Similarity=0.080 Sum_probs=230.2
Q ss_pred CCCCeEEecCCCCCC-CchhHhhhccccccccc-Ccc-cccc--ccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDPTM-YEKYWQKVGDKTTIVIP-GWQ-SLSY--FSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~-~~~-~~~~--y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.++.+|||+.++|.. ..++.+.+... ..+.. +.. .... |+...+ ..+|+++++++++. ++.|
T Consensus 41 ~g~~~id~~~~~~~g~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g~~~~-----~~~l~~~la~~~~~-------~~~i 107 (399)
T 3tqx_A 41 GEKEVLNFCANNYLGLADHPALIKTAQ-TVVEQYGFGMASVRFICGTQTI-----HKELEKDISEFLGT-------DDTI 107 (399)
T ss_dssp TTEEEEECSSCCTTSCTTCHHHHHHHH-HHHHHHCSCCCSCCCCCCCBHH-----HHHHHHHHHHHHTC-------SEEE
T ss_pred CCeeEEEeeccCcccccCCHHHHHHHH-HHHHHhCCCCCCcCccccCchH-----HHHHHHHHHHHHCC-------CcEE
Confidence 456789999997743 33333433211 11111 100 0011 122222 37899999998863 3577
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc---C------CCeEEEEc
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK---D------GPYIELVT 236 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~---~------~~~~i~v~ 236 (456)
++++| ++++..++.+++++|| .|+++.|+|+.+...++..|.+++.++. |.+.++. . ++++++++
T Consensus 108 ~~~sG-t~a~~~~l~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 182 (399)
T 3tqx_A 108 LYSSC-FDANGGLFETLLGPED----AIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATD 182 (399)
T ss_dssp EESCH-HHHHHTTHHHHCCTTC----EEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEE
T ss_pred EECch-HHHHHHHHHHhcCCCC----EEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEe
Confidence 77777 6799999999999999 9999999999999999999999988774 5555432 1 68999999
Q ss_pred CCCCCCcccch-----HHhhhcCcEEEeeecCCC-C-CCC--CCC---C-CCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 237 SPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-P-QYT--SIT---Y-PADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 237 ~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-~-~~~--~~~---~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
+||||||.+++ ++|+++|+++|+||+|.. . ... +.. . ..+.+++++||||.++ |++.||++++ +
T Consensus 183 ~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~-~ 259 (399)
T 3tqx_A 183 GVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGH-K 259 (399)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEEC-H
T ss_pred CCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcC-H
Confidence 99999999988 489999999999999952 1 111 111 1 2366899999999998 4455999996 9
Q ss_pred HHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 304 EVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 304 ~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
++++.+...... .+.+.+++.+.++.+.++.. .++.++.+++++++++.+.+.|++.+ +.+.++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~- 326 (399)
T 3tqx_A 260 EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL-----------KTEGPQLRKQLQENSRYFRAGMEKLG-FQLVPGN- 326 (399)
T ss_dssp HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH-----------HHTHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCS-
T ss_pred HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH-----------hhccHHHHHHHHHHHHHHHHHHHHcC-CCcCCCC-
Confidence 999988876332 24467777777888877731 25678899999999999999999874 4443333
Q ss_pred cccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
++|+|+.++. +...+.+.|.++||.+.|+..++ .+.+++||+++ .+++++++++++|++++
T Consensus 327 -------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 327 -------------HPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVG 393 (399)
T ss_dssp -------------SSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -------------CCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 3378888864 45677788888999999875543 24579999996 48999999999999876
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=256.98 Aligned_cols=315 Identities=14% Similarity=0.125 Sum_probs=230.7
Q ss_pred CCCCeEEecCCCCCCC-chhHhhhccccccccc-Cc-ccccccc--CCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDPTMY-EKYWQKVGDKTTIVIP-GW-QSLSYFS--DVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~-~~~~~~~~~~~~~~~~-~~-~~~~~y~--~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.+...|||+.+.|... .++.+.+... ..+.. +. .....|+ ...+ ..+|+++++++++. + +.|
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g~~~~-----~~~l~~~la~~~g~------~-~~i 109 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAK-AGMDSHGFGMASVRFICGTQDS-----HKELEQKLAAFLGM------E-DAI 109 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHH-HHHHHHCSCCCSCHHHHCCBHH-----HHHHHHHHHHHHTC------S-EEE
T ss_pred CCccEEEeeccCcccccCCHHHHHHHH-HHHHHhCCCCCCCCcccCCcHH-----HHHHHHHHHHHhCC------C-cEE
Confidence 4567899999977432 2333433221 11111 11 0011232 1233 48999999999953 3 577
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc---C------CCeEEEEc
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK---D------GPYIELVT 236 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~---~------~~~~i~v~ 236 (456)
++++| ++++..++++++++|| .|+++.|+|+.+...++..|.+++.++. |.+.++. . ++++|+++
T Consensus 110 ~~~sG-s~a~~~~~~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 184 (401)
T 1fc4_A 110 LYSSC-FDANGGLFETLLGAED----AIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp EESCH-HHHHHTTHHHHCCTTC----EEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred EeCCh-HHHHHHHHHHHcCCCC----EEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEe
Confidence 77777 5688889999999999 9999999998888888989999988864 5555432 1 67899999
Q ss_pred CCCCCCcccch-----HHhhhcCcEEEeeecCC-CCCC-CC------CCCCCCCcEEEecCcccc-CCCCceEEEEEEeC
Q 012785 237 SPNNPDGSVRQ-----SVVNRSGGILVHDLAYY-WPQY-TS------ITYPADHDLMLFTVSKST-GHAGTRIGWALVKD 302 (456)
Q Consensus 237 ~P~NPtG~~~~-----~l~~~~~~~iI~De~y~-~~~~-~~------~~~~~~~~i~i~S~SK~~-g~~G~RiG~l~~~~ 302 (456)
+||||||.+++ ++|+++|+++|+||+|. +... .. .....+.+++++||||.+ |.+| ||++++
T Consensus 185 ~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g---G~~~~~- 260 (401)
T 1fc4_A 185 GVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG---GYTAAR- 260 (401)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC---EEEEEC-
T ss_pred CCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC---EEEEcC-
Confidence 99999999987 48999999999999995 5321 11 111235689999999999 6555 999996
Q ss_pred HHHHHHHHHHHh--hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 303 MEVAKKMTKYIE--LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 303 ~~~~~~l~~~~~--~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
+++++.+..... ..+.+.+++.|.++.+.|+.+. + .++.+++++++++.+.+.|++.+ +.+. +.
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~-~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~ 326 (401)
T 1fc4_A 261 KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE-----------A-GSELRDRLWANARQFREQMSAAG-FTLA-GA 326 (401)
T ss_dssp HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH-----------T-CHHHHHHHHHHHHHHHHHHHHTT-CCBC-CS
T ss_pred HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh-----------c-CHHHHHHHHHHHHHHHHHHHHcC-Cccc-CC
Confidence 999998887542 2366889999999998887421 1 35678889999999999999874 4443 22
Q ss_pred CcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEec--CChhHHHHHHHHHHhh
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISML--DRDENYNLFVQRLSKI 454 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~--~~~e~i~~~l~~L~~~ 454 (456)
.++|+|++++. +...+.+.|.++||.+++|..|+. ..+++||+++ .+++++++++++|+++
T Consensus 327 -------------~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 327 -------------DHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp -------------SSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred -------------CCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33378998864 456677888889999999988764 3568999997 3899999999999987
Q ss_pred h
Q 012785 455 L 455 (456)
Q Consensus 455 l 455 (456)
+
T Consensus 394 ~ 394 (401)
T 1fc4_A 394 G 394 (401)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=250.20 Aligned_cols=281 Identities=11% Similarity=0.069 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~ 219 (456)
.++++++++++.. .|.. ++++|++|+|+++++.+++.+++++|| +|++++|+|+. +...++..|++++.++
T Consensus 52 ~~~~~~~~~~la~~~g~~--~~~~v~~~~g~t~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 125 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVE--KGEVLLVPSSGTGIMEASIRNGVSKGG----KVLVTIIGAFGKRYKEVVESNGRKAVVLE 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCS--SSEEEEESSCHHHHHHHHHHHHSCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCC--CCcEEEEeCChHHHHHHHHHHhhcCCC----eEEEEcCCchhHHHHHHHHHhCCceEEEe
Confidence 5667777776643 4543 246899999999999999999999999 99999999998 8888899999988776
Q ss_pred c------Cccccc-----cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCC-CCCCCCCCcEEEe
Q 012785 220 G------DAKRFN-----KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYT-SITYPADHDLMLF 282 (456)
Q Consensus 220 ~------d~~~l~-----~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~-~~~~~~~~~i~i~ 282 (456)
. |.+.++ ..+++++++++|+||||.+.+ ++|+++|+++|+||+|....+. ++ ...+.+++++
T Consensus 126 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-~~~~~di~~~ 204 (386)
T 2dr1_A 126 YEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKF-DKWGLDVVFS 204 (386)
T ss_dssp CCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCT-TTTTCSEEEE
T ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccc-cccCCcEEEE
Confidence 5 344443 236789999999999999977 4899999999999999854331 22 2346799999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHH----------------HH--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMT----------------KY--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~----------------~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
|+||.++.++ ++||++++ +++++.+. .. ....+.+.+.+.|.++.++|+.+
T Consensus 205 s~sK~~~~~~-g~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--------- 273 (386)
T 2dr1_A 205 SSQKAFGVPP-GLAIGAFS-ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRII--------- 273 (386)
T ss_dssp ETTSTTCCCS-SCEEEEEC-HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHH---------
T ss_pred eccccccCCC-ceEEEEEC-HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH---------
Confidence 9999998652 49999997 88887763 22 12345678889999998888742
Q ss_pred cchh--HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEe
Q 012785 345 EDEC--FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILT 420 (456)
Q Consensus 345 ~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v 420 (456)
++ .+++.+++++++++.+.+.|+++ ++.+..+.+. ..++++|+.++. +.+.+.+.|.++||.+
T Consensus 274 --~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v 340 (386)
T 2dr1_A 274 --EKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGH----------ESPTITAVLTPPGIKGDEVYEAMRKRGFEL 340 (386)
T ss_dssp --HHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTC----------BCSSEEEEECCTTCCHHHHHHHHHHTTEEC
T ss_pred --HHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccc----------cCCceEEEEcCCCCCHHHHHHHHHHCCeEE
Confidence 22 36788999999999999999987 4555544321 123478888863 5667778888889999
Q ss_pred ecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 421 RSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 421 ~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+||..|. .++++||++. .+++++++++++|++++
T Consensus 341 ~~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 376 (386)
T 2dr1_A 341 AKGYGSV-KEKTFRIGHMGYMKFEDIQEMLDNLREVI 376 (386)
T ss_dssp EECCGGG-TTTEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred ecCcccc-CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9998664 3679999998 38999999999999875
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=262.19 Aligned_cols=324 Identities=15% Similarity=0.142 Sum_probs=231.3
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCc---c-ccccccC--CCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGW---Q-SLSYFSD--VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~---~-~~~~y~~--~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
+++|+|+.|.|. +.++.+.++.. ..+.... + ....|++ ..+ ..+++++++++++.. ++++|+
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~-~~~~~~~~~~~~~~~~y~~~~~~~-----~~~l~~~la~~~~~~-----~~~~v~ 94 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLM-HYYENDNANVHRGAHQLSVRATDA-----YEAVRNKVAKFINAR-----SPREIV 94 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHH-HHHHHTCCCC--CCSHHHHHHHHH-----HHHHHHHHHHHTTCS-----CGGGEE
T ss_pred CceEEecCCccC-CCCHHHHHHHH-HHHHhccCCCCcccchHHHHHHHH-----HHHHHHHHHHHcCCC-----CCCeEE
Confidence 457999999998 44444443322 1121110 1 1123543 244 488999999998631 247899
Q ss_pred EccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCC----hhhhhhhcCCeEeeeccC------cccccc---CCC
Q 012785 168 VGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSS----YPSITDCVKSRLYKWAGD------AKRFNK---DGP 230 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~----~~~~~~~~g~~~~~~~~d------~~~l~~---~~~ 230 (456)
+|+|+++++.+++.++ .++|| +|++++|+|+. +...++..|.+++.++.| .+.++. .++
T Consensus 95 ~~~g~t~a~~~~~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 170 (420)
T 1t3i_A 95 YTRNATEAINLVAYSWGMNNLKAGD----EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKT 170 (420)
T ss_dssp EESSHHHHHHHHHHHTHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTE
T ss_pred EcCChHHHHHHHHHHhhhcccCCCC----EEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCc
Confidence 9999999999999999 88999 99999999998 556677889998877654 333432 367
Q ss_pred eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 231 YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
++|++++|+||||.+++ ++|+++|+++|+|++|...... +. ...+.+++++|+||.+|.+| +||++++ ++
T Consensus 171 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-~~~~~~~~di~~~s~sK~~~~~g--~G~~~~~-~~ 246 (420)
T 1t3i_A 171 KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP-LDVQLIDCDWLVASGHKMCAPTG--IGFLYGK-EE 246 (420)
T ss_dssp EEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-CCHHHHTCSEEEEEGGGTTSCTT--CEEEEEC-HH
T ss_pred eEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCcc-CchhhcCCCEEEEehhhhcCCCc--eEEEEEc-hH
Confidence 89999999999999987 4899999999999999853321 11 12257899999999999778 9999996 88
Q ss_pred HHHHHHHHHhh--------------------ccCcCChHHHHHHHH-HHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 305 VAKKMTKYIEL--------------------NTIGVSKDSQLRAAK-VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 305 ~~~~l~~~~~~--------------------~~~~~s~~~q~~a~~-~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
+++++...... ...+.+.+.|.++.. .++.+. +..+++.+++++++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~~~~~~~~~~~~~~~~~ 316 (420)
T 1t3i_A 247 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT----------DLGMENIHNYEVELTHY 316 (420)
T ss_dssp HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH----------HHCHHHHHHHHHHHHHH
T ss_pred HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHH
Confidence 88877654321 124577778877654 455321 22467788899999999
Q ss_pred HHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC------C-CCeEEE
Q 012785 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF------S-PKYVRI 435 (456)
Q Consensus 364 l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~------~-~~~iRi 435 (456)
+.+.|++++++.+..+.... ...++|+++.++. +.+.+.+.|.++||.++||..|.. + ++++||
T Consensus 317 l~~~L~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRi 388 (420)
T 1t3i_A 317 LWQGLGQIPQLRLYGPNPKH--------GDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARA 388 (420)
T ss_dssp HHHHHHTCTTEEEESCCGGG--------SCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEE
T ss_pred HHHHHHhCCCeEEeCCCccc--------cccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEE
Confidence 99999987556655443100 0012255556754 456778889999999999965521 2 689999
Q ss_pred EecC--ChhHHHHHHHHHHhhh
Q 012785 436 SMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~--~~e~i~~~l~~L~~~l 455 (456)
++.. +++++++++++|++++
T Consensus 389 s~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 389 SLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHH
Confidence 9985 8899999999998875
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=252.62 Aligned_cols=316 Identities=13% Similarity=0.100 Sum_probs=230.0
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhccccccccc-Cc-cccccc--cCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIP-GW-QSLSYF--SDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~-~~-~~~~~y--~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.+..+|||+.|++ .+.+++.+.+... ..+.. +. .....| ....+ ..+|+++++++++. ++.|
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~-~~~~~~~~~~~~~~~~~g~~~~-----~~~l~~~la~~~g~-------~~~i 103 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQ-QGAEQFGIGSGGSGHVSGYSVV-----HQALEEELAEWLGY-------SRAL 103 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHH-HHHHHHCSCCCSBTTTTCCCHH-----HHHHHHHHHHHHTC-------SEEE
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHH-HHHHHhCCCCCCcCcccCChHH-----HHHHHHHHHHHhCC-------CcEE
Confidence 3557899999985 4333443433221 11211 11 001123 23334 48999999999853 3567
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc----C--CCeEEEEcCCC
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK----D--GPYIELVTSPN 239 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~----~--~~~~i~v~~P~ 239 (456)
++++| ++++..+++++.++|| .|+++.|+|+.+...++..|.+++.++. |.+.++. . +++++++++||
T Consensus 104 ~~~sG-t~a~~~~~~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~ 178 (384)
T 1bs0_A 104 LFISG-FAANQAVIAAMMAKED----RIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVF 178 (384)
T ss_dssp EESCH-HHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBC
T ss_pred EeCCc-HHHHHHHHHHhCCCCc----EEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 77777 7999999999999999 9999999999999999999999988774 4454432 2 36889999999
Q ss_pred CCCcccch-----HHhhhcCcEEEeeecCCCCCC----CCCC--CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 240 NPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TSIT--YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 240 NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~~~--~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||||.+++ ++|+++|+++|+||+|....+ .++. ...+.+++++||||.+|++| ||++++ +++++.
T Consensus 179 nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~-~~~~~~ 254 (384)
T 1bs0_A 179 SMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG---AAVLCS-STVADY 254 (384)
T ss_dssp TTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC---EEEEEC-HHHHHH
T ss_pred CCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC---cEEEeC-HHHHHH
Confidence 99999987 389999999999999975322 1111 11235699999999999777 999996 999998
Q ss_pred HHHHHh--hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 309 MTKYIE--LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 309 l~~~~~--~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+..... ..+.+.+++.|.++.+.|+.+.+ .+.++.+++++++++.+.+.|++++ +.+.++
T Consensus 255 l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~------- 316 (384)
T 1bs0_A 255 LLQFARHLIYSTSMPPAQAQALRASLAVIRS----------DEGDARREKLAALITRFRAGVQDLP-FTLADS------- 316 (384)
T ss_dssp HHHHCHHHHSSBCCCHHHHHHHHHHHHHHHS----------HHHHHHHHHHHHHHHHHHHHHTTSS-CEECSC-------
T ss_pred HHHhchhhhcCCCCCHHHHHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHHHHhcC-CcccCC-------
Confidence 877532 22346889999888888874211 1567788999999999999998874 444322
Q ss_pred ccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 387 LGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.++|+|+.++. +...+.+.|.++||.++||..|+. ..+++||+++. +++++++++++|+++
T Consensus 317 -------~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 317 -------CSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -------CSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred -------CCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 22367777753 456677888888999999998863 35799999975 899999999999875
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=254.48 Aligned_cols=277 Identities=13% Similarity=0.158 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhh---hhcCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSIT---DCVKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~---~~~g~~ 214 (456)
..+|+++++++++. ++++|++|+|+++++.+++.++. ++|| +|++++|+|+.+...+ +..|.+
T Consensus 46 ~~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~g~~ 115 (384)
T 1eg5_A 46 MEKAREKVAKVLGV------SPSEIFFTSCATESINWILKTVAETFEKRKR----TIITTPIEHKAVLETMKYLSMKGFK 115 (384)
T ss_dssp HHHHHHHHHHHHTS------CGGGEEEESCHHHHHHHHHHHHHHHTTTTCC----EEEECTTSCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCC------CCCeEEEECCHHHHHHHHHHhhhhhccCCCC----EEEECCCCchHHHHHHHHHHhcCCE
Confidence 48899999999863 45789999999999999999998 7899 9999999999886665 667999
Q ss_pred EeeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcC--cEEEeeecCCCCCC-CCCCCCCCC
Q 012785 215 LYKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSG--GILVHDLAYYWPQY-TSITYPADH 277 (456)
Q Consensus 215 ~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~--~~iI~De~y~~~~~-~~~~~~~~~ 277 (456)
++.++.| .+.++. .+++++++++|+||||.+++ ++|+++| +++|+||+|..... ..+ ...+.
T Consensus 116 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~-~~~~~ 194 (384)
T 1eg5_A 116 VKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSL-EKLEV 194 (384)
T ss_dssp EEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCC-TTTCC
T ss_pred EEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCc-hhcCC
Confidence 8877654 344432 36789999999999999988 4899999 99999999873211 112 22357
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHH--HHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEV--AKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~--~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
+++++|+||.+|++| +||++++ +++ ...+... ....+.+.+.+.|.++.++|+.. .+++++
T Consensus 195 di~~~s~sK~~g~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~~~ 260 (384)
T 1eg5_A 195 DYASFSAHKFHGPKG--VGITYIR-KGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA-----------VEELSE 260 (384)
T ss_dssp SEEEEEGGGGTSCTT--CEEEEEC-TTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-----------HHTHHH
T ss_pred CEEEecHHHhcCCCc--eEEEEEc-CCCccccccccCcccccccCCCCChHHHHHHHHHHHHH-----------HHhHHH
Confidence 899999999999888 7999997 554 2222111 11245678999999988888731 356788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCC-CcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC-
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS- 429 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~- 429 (456)
.+++++++++.+.+.|++. ++.+..+. +.+ +.++++.+++ +.+.+.+.|.++||.+++|..|+..
T Consensus 261 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~ 328 (384)
T 1eg5_A 261 AAKHMEKLRSKLVSGLMNL-GAHIITPLEISL-----------PNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKD 328 (384)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECSCTTSBC-----------TTEEEEECTTCCHHHHHHHHHHTTEECBC--------
T ss_pred HHHHHHHHHHHHHHHhCCC-CeEEeCCcccCC-----------CCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCC
Confidence 9999999999999999884 45554432 211 1256666653 5667788889999999999887531
Q ss_pred -----------------CCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 430 -----------------PKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 -----------------~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.+++||+++ .+++++++++++|++++
T Consensus 329 ~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 373 (384)
T 1eg5_A 329 ERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (384)
T ss_dssp ----CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999998 48999999999999875
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-30 Score=255.66 Aligned_cols=318 Identities=14% Similarity=0.108 Sum_probs=228.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCc---cc---cccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGW---QS---LSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~---~~---~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
++++.|+.+.+... ++.+.++.. ..+.... +. ...|.+..+ ..+++++++++++.. ++++|+
T Consensus 22 ~~~i~l~~~~~~~~-~~~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~la~~~~~~-----~~~~v~ 89 (406)
T 1kmj_A 22 LPLAYLDSAASAQK-PSQVIDAEA-EFYRHGYAAVHRGIHTLSAQATEK-----MENVRKRASLFINAR-----SAEELV 89 (406)
T ss_dssp EECEECCTTTCCCC-CHHHHHHHH-HHHHHTCCCCSSCSSHHHHHHHHH-----HHHHHHHHHHHTTCS-----CGGGEE
T ss_pred CceEEecCCccCCC-CHHHHHHHH-HHHHhhcCCCCCCcchHHHHHHHH-----HHHHHHHHHHHcCCC-----CCCeEE
Confidence 46799999988743 333433221 1122111 10 001223344 488999999998531 247899
Q ss_pred EccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCChh----hhhhhcCCeEeeeccC------cccccc---CCC
Q 012785 168 VGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSYP----SITDCVKSRLYKWAGD------AKRFNK---DGP 230 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~~----~~~~~~g~~~~~~~~d------~~~l~~---~~~ 230 (456)
+|+|+++++.+++.++ .++|| +|++++|+|+... ..++..|.+++.++.+ .+.++. .++
T Consensus 90 ~~~g~t~a~~~~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~ 165 (406)
T 1kmj_A 90 FVRGTTEGINLVANSWGNSNVRAGD----NIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKT 165 (406)
T ss_dssp EESSHHHHHHHHHHHTHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTE
T ss_pred EeCChhHHHHHHHHHhhhhcCCCCC----EEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCC
Confidence 9999999999999999 88999 9999999987643 3466779988877653 444432 367
Q ss_pred eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 231 YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
++|++++|+||||.+++ ++|+++|+++|+||+|..... ++. ...+.+++++|+||.+|.+| +||++++ ++
T Consensus 166 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-~~~~~~~~~d~~~~s~~K~~g~~G--~G~~~~~-~~ 241 (406)
T 1kmj_A 166 RLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-PVDVQALDCDFYVFSGHKLYGPTG--IGILYVK-EA 241 (406)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-CCCHHHHTCSEEEEEGGGTTSCTT--CEEEEEC-HH
T ss_pred eEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCC-CCcccccCCCEEEEEchhccCCCC--cEEEEEe-HH
Confidence 89999999999999987 489999999999999986322 221 11257899999999999888 8999996 88
Q ss_pred HHHHHHHHHh---------------------hccCcCChHHHHHHH-HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 305 VAKKMTKYIE---------------------LNTIGVSKDSQLRAA-KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 305 ~~~~l~~~~~---------------------~~~~~~s~~~q~~a~-~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
+++++..... ....+.+.+.|.++. +.++.+. +..+++.+++++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~~~~~~~~~~~~~~~~ 311 (406)
T 1kmj_A 242 LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS----------ALGLNNIAEYEQNLMH 311 (406)
T ss_dssp HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH----------HHCHHHHHHHHHHHHH
T ss_pred HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH----------HcCHHHHHHHHHHHHH
Confidence 8887754431 122456777777665 5555321 2356778889999999
Q ss_pred HHHHHHHhcCCccccCC--CCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-------CCCe
Q 012785 363 QLRMAVQKSGLFSVPEL--PSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF-------SPKY 432 (456)
Q Consensus 363 ~l~~~L~~~~~~~~~~~--~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~-------~~~~ 432 (456)
.+.+.|++++++.+..+ .|+ |+++.+++ +.+.+.+.|.++||.++||..|.. .+++
T Consensus 312 ~l~~~L~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~ 377 (406)
T 1kmj_A 312 YALSQLESVPDLTLYGPQNRLG--------------VIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAM 377 (406)
T ss_dssp HHHHHHTTSTTEEEESCTTCCS--------------EEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCE
T ss_pred HHHHHHhcCCCeEEecCCCcCC--------------EEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCe
Confidence 99999998755665555 444 44445653 456677889999999999986421 2689
Q ss_pred EEEEecC--ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+||++.. +++++++++++|++++
T Consensus 378 iRis~~~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 378 CRASLAMYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHH
Confidence 9999975 8999999999998875
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=241.04 Aligned_cols=275 Identities=12% Similarity=0.020 Sum_probs=207.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~ 219 (456)
..+++++++++++. ++++|++|+|+++++.++++++.++|| +|++++|+|+.+. ..++..|.+++.++
T Consensus 36 ~~~l~~~la~~~g~------~~~~i~~~~g~t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 105 (352)
T 1iug_A 36 FLKARGLLREAFRT------EGEVLILTGSGTLAMEALVKNLFAPGE----RVLVPVYGKFSERFYEIALEAGLVVERLD 105 (352)
T ss_dssp HHHHHHHHHHHHTC------SSEEEEEESCHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhCC------CCceEEEcCchHHHHHHHHHhccCCCC----eEEEEeCCchhHHHHHHHHHcCCceEEEe
Confidence 37899999999864 357999999999999999999999999 9999999999875 44556799988776
Q ss_pred cC------ccccccCCCeEEEEcCCCCCCcccch-----HHhhhc--CcEEEeeecCCCCCCCCCC-CCCCCcEEEecCc
Q 012785 220 GD------AKRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRS--GGILVHDLAYYWPQYTSIT-YPADHDLMLFTVS 285 (456)
Q Consensus 220 ~d------~~~l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~--~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~S 285 (456)
.| .+.++..+++++++++||||||.+++ ++|+++ |+++|+||+|.... .++. ...+.+++++|+|
T Consensus 106 ~~~~~~~d~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-~~~~~~~~~~d~~~~s~~ 184 (352)
T 1iug_A 106 YPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV-GEVALEAMGVDAAASGSQ 184 (352)
T ss_dssp CCTTCCCCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT-BCCCSGGGTCSEEEEESS
T ss_pred CCCCCCCCHHHHhccCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccC-cceeccccCeeEEEecCc
Confidence 53 44444446789999999999999987 488999 99999999997321 2221 1224689999999
Q ss_pred cc-cCCCCceEEEEEEeCHHHHHH---------HHH----H-HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 286 KS-TGHAGTRIGWALVKDMEVAKK---------MTK----Y-IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 286 K~-~g~~G~RiG~l~~~~~~~~~~---------l~~----~-~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
|. +|.+| +||++++ ++++++ +.. . ......+.+...+.++.++++.+ ++++
T Consensus 185 K~~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~ 250 (352)
T 1iug_A 185 KGLMCPPG--LGFVALS-PRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV-----------LPRL 250 (352)
T ss_dssp STTCCCSC--EEEEEEC-HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-----------GGGH
T ss_pred ccccCCCc--eeEEEEC-HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH-----------HHHH
Confidence 94 44444 8999996 776654 221 1 12234556777777777777732 2347
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
++.+++++++++.+.+.|+++ ++.+..+. ..++++|++++. +.+.+.+.|.++||.+++|..+.
T Consensus 251 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~- 316 (352)
T 1iug_A 251 EEHLALKAWQNALLYGVGEEG-GLRPVPKR------------FSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPL- 316 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCEESCSS------------BCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcccccc------------cCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCcc-
Confidence 888999999999999999987 45554432 022378888863 56678888888999999988432
Q ss_pred CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.++++||++.. +++++++++++|++++
T Consensus 317 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 345 (352)
T 1iug_A 317 KGKVFRLSLMGAYDRYEALGVAGMFREVL 345 (352)
T ss_dssp TTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHHH
Confidence 46899999974 7899999999998875
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=252.56 Aligned_cols=277 Identities=12% Similarity=0.071 Sum_probs=208.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLY 216 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~ 216 (456)
..+++++++++++. ++++|++|+|+++++.++++++ .++|| +|++++|+|+.+... ++..|.+++
T Consensus 61 ~~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~~~~ 130 (390)
T 1elu_A 61 IAQLRQALAETFNV------DPNTITITDNVTTGCDIVLWGLDWHQGD----EILLTDCEHPGIIAIVQAIAARFGITYR 130 (390)
T ss_dssp HHHHHHHHHHHTTS------CGGGEEEESSHHHHHHHHHHHSCCCTTC----EEEEETTCCHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHcCC------CHHHEEEeCChHHHHHHHHhCCCCCCCC----EEEEecCcccHHHHHHHHHHHHhCcEEE
Confidence 48999999999853 4568999999999999999999 78999 999999999997654 466799988
Q ss_pred eeccC--------cccccc---CCCeEEEEcCCCCCCcccch-----HHhh----hcCcEEEeeecCCCCCCCCCC-CCC
Q 012785 217 KWAGD--------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVN----RSGGILVHDLAYYWPQYTSIT-YPA 275 (456)
Q Consensus 217 ~~~~d--------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~----~~~~~iI~De~y~~~~~~~~~-~~~ 275 (456)
.++.+ .+.++. .++++|++++||||||.+++ ++|+ ++|+++|+||+|.... .++. ...
T Consensus 131 ~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~-~~~~~~~~ 209 (390)
T 1elu_A 131 FFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS-LPLDFSRL 209 (390)
T ss_dssp EECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT-BCCCTTTS
T ss_pred EEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC-cCCChhhc
Confidence 77754 233433 35789999999999999987 4889 9999999999998422 2221 234
Q ss_pred CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH----------------------HhhccCcCChHHHHHHHHHHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY----------------------IELNTIGVSKDSQLRAAKVLK 333 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~----------------------~~~~~~~~s~~~q~~a~~~L~ 333 (456)
+.+++++|+||.++ +|.++||++++ +++++.+... ......+.+.+.+.++.++++
T Consensus 210 ~~d~~~~s~~K~~~-~~~g~G~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 287 (390)
T 1elu_A 210 EVDYYAFTGHKWFA-GPAGVGGLYIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ 287 (390)
T ss_dssp CCSEEEEESSSTTC-CCTTCEEEEEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH
T ss_pred CCCEEEcccccccc-CCCceEEEEEC-HHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHH
Confidence 57899999999443 56679999997 7777766532 122234566777777767676
Q ss_pred hhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHH
Q 012785 334 VVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCES 411 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~ 411 (456)
.+.+ ..++++.+++++++++.+.+.|++++++.+..|. ++.++|++++++. +.+.+.+
T Consensus 288 ~l~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 347 (390)
T 1elu_A 288 LHQR---------QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS-----------APQAGLVSFTVDSPLGHRAIVQ 347 (390)
T ss_dssp HHHH---------HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS-----------CCSSSEEEEEECSSSCHHHHHH
T ss_pred HHHH---------cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc-----------cccccEEEEEcCCCCCHHHHHH
Confidence 4322 2357888999999999999999987555554321 1223355557742 5667778
Q ss_pred HHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 412 FLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 412 ~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.|.++||.+++|. .++++||++. .+++++++++++|+++.
T Consensus 348 ~l~~~gi~v~~~~----~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 389 (390)
T 1elu_A 348 KLEEQRIYLRTIA----DPDCIRACCHYITDEEEINHLLARLADFG 389 (390)
T ss_dssp HHHHTTEECEEET----TTTEEEEECCTTCCHHHHHHHHHHHTTCC
T ss_pred HHHHCCEEEEecC----CCCeEEEecccCCCHHHHHHHHHHHHhhC
Confidence 8889999999976 3689999985 48999999999998753
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-31 Score=260.23 Aligned_cols=314 Identities=13% Similarity=0.061 Sum_probs=220.1
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCc------cccccccCCCCcccCCCHHHHHH-HHHHHHHhcCccCCCce
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGW------QSLSYFSDVRNLCWFLEPEFAKE-VVRLHKVVGNAITENHH 165 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~------~~~~~y~~~~G~~~~~~~~lr~a-ia~~~~~~g~~~~~~~~ 165 (456)
+++++.|+.|.+..+.++.+.++... .+.... .....|.+..+ ..+++++ ++++++. + +
T Consensus 6 ~~~~i~ld~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~la~~~~~-------~-~ 71 (371)
T 2e7j_A 6 TKDFINIDPLQTGGKLTEEARQALLE-WGDGYSVCDFCTTGRLDEIKTPP-----IHDFIHNQLPKFLGC-------D-V 71 (371)
T ss_dssp --CCEECCHHHHTCCCCHHHHHHHHH-C--------------------CC-----HHHHHHTHHHHHTTS-------S-E
T ss_pred CCCcEEecccccCCCCCHHHHHHHHH-HHhhcccCCccccccchhhHHHH-----HHHHHHHHHHHHcCC-------C-E
Confidence 34678888866555545444433221 111110 00112333445 5899999 9999864 3 8
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec--cC------cccccc--------CC
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA--GD------AKRFNK--------DG 229 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~--~d------~~~l~~--------~~ 229 (456)
|++|+|+++++.+++++++++|| +|++++|+|+.+...++..|++++.++ .| .+.++. .+
T Consensus 72 v~~~~g~t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 147 (371)
T 2e7j_A 72 ARVTNGAREAKFAVMHSLAKKDA----WVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGE 147 (371)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSC
T ss_pred EEEeCChHHHHHHHHHHHhCCCC----EEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCC
Confidence 99999999999999999999999 999999999999999999999998877 54 333331 36
Q ss_pred CeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 230 PYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
++++++++||||||.+++ ++|+++|+++|+||+|...... .. ...+.+++++|+||.++ ++.|+||++++ +
T Consensus 148 ~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~-~~~~~~~~di~~~s~sK~~~-~~~~~G~~~~~-~ 224 (371)
T 2e7j_A 148 VVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP-VSLKEIGADFIVGSGHKSMA-ASGPIGVMGMK-E 224 (371)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBC-CCHHHHTCSEEEEEHHHHSS-CCSSCEEEEEC-T
T ss_pred eEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCC-CChhhcCCCEEEecCCcCCC-CCCCcEEEEEe-c
Confidence 789999999999999987 3899999999999999864321 11 11245799999999998 44599999997 6
Q ss_pred HHHHH-HHHHHh--hc-----cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH--HHHHHHHHHHHHhcCC
Q 012785 304 EVAKK-MTKYIE--LN-----TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM--STRWKQLRMAVQKSGL 373 (456)
Q Consensus 304 ~~~~~-l~~~~~--~~-----~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~l~~~L~~~~~ 373 (456)
+++++ +..... .. ....+...+.++.+.++.+ ++ +.++++ +++++.+.+.|++. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----------~~---~~~~~~~~~~~~~~l~~~L~~~-~ 289 (371)
T 2e7j_A 225 EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV-----------RE---RIKRWDEEVEKARRFAAEMEKL-G 289 (371)
T ss_dssp TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH-----------HH---HGGGHHHHHHHHHHHHHHHHHT-T
T ss_pred hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH-----------HH---HHHHHHHHHHHHHHHHHHHHHc-C
Confidence 77666 654432 11 3344555555555666521 11 456667 78888999999887 4
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC-----CCCCeEE-EEec---CChhHH
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG-----FSPKYVR-ISML---DRDENY 444 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg-----~~~~~iR-is~~---~~~e~i 444 (456)
+.+..+.. ..++++|++++ +.+.+.+.|.++||.+.| ..|+ ..++++| ++++ .+++++
T Consensus 290 ~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i 356 (371)
T 2e7j_A 290 IKQLGDNP-----------HNHDLMFFHAE-VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEV 356 (371)
T ss_dssp CEEESSSS-----------CCSSEEEEECH-HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHH
T ss_pred cEEecCCC-----------ccCceEEEECC-CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHH
Confidence 55544321 02337899887 666788888899999998 5442 2378999 9998 589999
Q ss_pred HHHHHHHHhhh
Q 012785 445 NLFVQRLSKIL 455 (456)
Q Consensus 445 ~~~l~~L~~~l 455 (456)
++++++|++++
T Consensus 357 ~~~~~~l~~~~ 367 (371)
T 2e7j_A 357 DYVLNAFKEII 367 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=248.42 Aligned_cols=319 Identities=12% Similarity=0.069 Sum_probs=227.1
Q ss_pred CCCCeEEecCCCC-CCCchhHhhhccccccccc-CccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 92 GGERIINVDHGDP-TMYEKYWQKVGDKTTIVIP-GWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 92 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
.++.+|||+.|++ .+..++.+.+... ..+.. +. ....|....|. .....+|+++++++++. ++.++++
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~-~~~~~~~~-~~~~~~~~~G~-~~~~~~l~~~la~~~g~-------~~~i~~~ 131 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGK-EALEKFGS-GTCGSRMLNGT-FHDHMEVEQALRDFYGT-------TGAIVFS 131 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHH-HHHHHHCS-CCCSCTTTTCC-CHHHHHHHHHHHHHHTC-------SEEEEES
T ss_pred CCceEEEEECcccccCCCCHHHHHHHH-HHHHHhCC-CCcccccccCC-cHHHHHHHHHHHHHhCC-------CceEEec
Confidence 4567899999986 3334444443322 11211 11 11112222330 00037888888888853 3455555
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc---C----CCeEEEEcCCCCC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK---D----GPYIELVTSPNNP 241 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~---~----~~~~i~v~~P~NP 241 (456)
+| ++++..++.++.++|| .|+++.|+|..+...++..|.+++.++. |.+.++. . ++++|++++|+||
T Consensus 132 sG-s~a~~~al~~l~~~gd----~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~ 206 (427)
T 2w8t_A 132 TG-YMANLGIISTLAGKGE----YVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSM 206 (427)
T ss_dssp CH-HHHHHHHHHHHSCTTC----EEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETT
T ss_pred Cc-HHHHHHHHHHhcCCCC----EEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCC
Confidence 55 5689999999999999 9999999999999999999999988763 5555432 1 6789999999999
Q ss_pred Ccccch-----HHhhhcCcEEEeeecCCCCCCC----C----CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQ-----SVVNRSGGILVHDLAYYWPQYT----S----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~-----~l~~~~~~~iI~De~y~~~~~~----~----~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++ ++|+++|+++|+||+|.+..+. + ....++.+++++||||.+|++| ||++++ +++++.
T Consensus 207 tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~-~~l~~~ 282 (427)
T 2w8t_A 207 LGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSN-HPKFEA 282 (427)
T ss_dssp TTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEEC-CTTGGG
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeC-HHHHHH
Confidence 999987 4899999999999999863322 1 1112356999999999999777 999996 788877
Q ss_pred HHHH-Hh-hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCCcccc
Q 012785 309 MTKY-IE-LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPSQFCT 385 (456)
Q Consensus 309 l~~~-~~-~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~ 385 (456)
+... .. ..+.+.++..+.++.+.|+.+. .+++.+++++++++.+.+.|++.+ +.+. .+.
T Consensus 283 l~~~~~~~~~~~~~~~~~~aa~~~al~~~~------------~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~----- 344 (427)
T 2w8t_A 283 VRLACRPYIFTASLPPSVVATATTSIRKLM------------TAHEKRERLWSNARALHGGLKAMG-FRLGTETC----- 344 (427)
T ss_dssp GGGTCHHHHSSCCCCHHHHHHHHHHHHHHT------------SCHHHHHHHHHHHHHHHHHHHHHT-CEESCSSC-----
T ss_pred HHHhcccccccCCCCHHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHHHHHHHHHcC-CcccCCCC-----
Confidence 7654 22 2345677777777778887421 245678889999999999998873 4443 220
Q ss_pred cccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.++++|+.+++ ....+.+.|.++||.+.|+..|+. +.+++||+++. +++++++++++|++++
T Consensus 345 --------~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 345 --------DSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp --------CSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred --------CCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 22378888864 356677888888999999988764 35799999985 8999999999999875
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=240.44 Aligned_cols=312 Identities=9% Similarity=0.065 Sum_probs=221.5
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccC-C-CCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-V-RNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~-~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+++|+.| |... ++.+.++.. +... ..|+. . .+ ..+++++++++++. ..+++++++|+|++
T Consensus 5 ~~~~~~g-p~~~-~~~v~~a~~-----~~~~--~~~~~~~~~~-----~~~l~~~la~~~g~----~~~~~~v~~~~g~t 66 (366)
T 1m32_A 5 YLLLTPG-PLTT-SRTVKEAML-----FDSC--TWDDDYNIGV-----VEQIRQQLTALATA----SEGYTSVLLQGSGS 66 (366)
T ss_dssp CEECSSS-SCCC-CHHHHHTTC-----CCCC--TTSHHHHTTT-----HHHHHHHHHHHHCS----SSSEEEEEEESCHH
T ss_pred cccccCC-CcCC-CHHHHHHHh-----hhhc--CCCHHHHHHH-----HHHHHHHHHHHhCC----CCcCcEEEEecChH
Confidence 5889888 6544 444444322 1111 12221 1 34 48999999999851 11235899999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeC-CCCCC-hhhhhhhcCCeEeeeccC------cccccc----C-CCeEEEEcCCCC
Q 012785 174 QLFQAALYALSSQDASEPISVVSAA-PYYSS-YPSITDCVKSRLYKWAGD------AKRFNK----D-GPYIELVTSPNN 240 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~-~~~~~~~~g~~~~~~~~d------~~~l~~----~-~~~~i~v~~P~N 240 (456)
+++.++++++..+|| +|++.+ |+|+. +...++..|.+++.++.| .+.++. . +++++++++|+|
T Consensus 67 ~a~~~~~~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~n 142 (366)
T 1m32_A 67 YAVEAVLGSALGPQD----KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSET 142 (366)
T ss_dssp HHHHHHHHHSCCTTC----CEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEET
T ss_pred HHHHHHHHHhcCCCC----eEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccC
Confidence 999999999999998 887776 56654 566778889988876653 333432 2 468898999999
Q ss_pred CCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-
Q 012785 241 PDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI- 313 (456)
Q Consensus 241 PtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~- 313 (456)
|||.+++ ++|+++|+++|+||+|..... ++. ...+.+++++|+||.++ .+.++||++++ +++++++....
T Consensus 143 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-~~~~~~~~~di~~~s~~K~~~-~~~g~G~~~~~-~~~~~~~~~~~~ 219 (366)
T 1m32_A 143 TTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-PMDIAALHIDYLISSANKCIQ-GVPGFAFVIAR-EQKLAACKGHSR 219 (366)
T ss_dssp TTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-CCCTTTTTCSEEEEESSSTTC-CCSSEEEEEEE-HHHHTTCTTCCS
T ss_pred CcceecCHHHHHHHHHHcCCEEEEECCccccCc-CccccccCccEEEecCccccc-CCCceEEEEEC-HHHHHhhcCCCC
Confidence 9999987 489999999999999985322 221 22357899999999774 23457999997 87776654310
Q ss_pred -----------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH--HHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 314 -----------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF--FEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 314 -----------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
....++.+...+.++.++++.+ .++ +++.+++++++++.+.+.|+++ ++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~ 287 (366)
T 1m32_A 220 SLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL-----------AKEGGVAARHQRYQQNQRSLVAGMRAL-GF 287 (366)
T ss_dssp CSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-----------HHHTHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred CccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH-----------HHccCHhHHHHHHHHHHHHHHHHHHHC-CC
Confidence 0012567778888888877742 233 6778899999999999999987 34
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFV 448 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l 448 (456)
.+..+.+. ..+.++|+.++. +.+.+.+.|.++||.+++|..| .++++|++++. +++++++++
T Consensus 288 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~--~~~~iRi~~~~~~~~~~i~~~~ 355 (366)
T 1m32_A 288 NTLLDDEL----------HSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS--QSDCFRIGNIGEVYAADITALL 355 (366)
T ss_dssp CBSSCGGG----------BCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCS--SSCEEEEECCSSCCHHHHHHHH
T ss_pred eeccCchh----------cCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCC--CCCEEEEecCCCCCHHHHHHHH
Confidence 44333100 112278888863 5677888888899999999877 37899999974 789999999
Q ss_pred HHHHhhhC
Q 012785 449 QRLSKILS 456 (456)
Q Consensus 449 ~~L~~~l~ 456 (456)
++|+++++
T Consensus 356 ~~l~~~~~ 363 (366)
T 1m32_A 356 TAIRTAMY 363 (366)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHHH
Confidence 99998763
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=244.60 Aligned_cols=317 Identities=11% Similarity=0.051 Sum_probs=225.6
Q ss_pred CCCeEEecCCCC-CCCchhHhhhccccccccc-Cc--c-ccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEE
Q 012785 93 GERIINVDHGDP-TMYEKYWQKVGDKTTIVIP-GW--Q-SLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIV 167 (456)
Q Consensus 93 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~-~~--~-~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~ 167 (456)
++.++++..++. .++.++.+.++.. ..+.. +. . ....|+...+ ..++|++++++++. +++|+
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~la~~~~~-------~~~i~ 111 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMH-EALEAVGAGSGGTRNISGTTAY-----HRRLEAEIAGLHQK-------EAALV 111 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHH-HHHHHHCSCCCSBTTTBCCBHH-----HHHHHHHHHHHTTC-------SEEEE
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHH-HHHHHcCCCCCCcCcccCChHH-----HHHHHHHHHHHhCC-------CcEEE
Confidence 356788887765 3333333333221 11211 11 0 0112444444 48999999999863 47899
Q ss_pred EccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-cccccc-------CCCeEEEEcC
Q 012785 168 VGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-AKRFNK-------DGPYIELVTS 237 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-~~~l~~-------~~~~~i~v~~ 237 (456)
+|+|++ ++..++.++. .+|| +|+++.|+|+.+...++..|++++.++.| .+.++. .++++|++++
T Consensus 112 ~~sG~~-a~~~~~~~l~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~ 186 (401)
T 2bwn_A 112 FSSAYN-ANDATLSTLRVLFPGL----IIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFES 186 (401)
T ss_dssp ESCHHH-HHHHHHHHHHHHSTTC----EEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEES
T ss_pred ECCcHH-HHHHHHHHHhcCCCCC----EEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEec
Confidence 999887 7777766653 5888 99999999999999999999999888764 333321 3678999999
Q ss_pred CCCCCcccch-----HHhhhcCcEEEeeecCCCCCC----CCCC---CC-CCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 238 PNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TSIT---YP-ADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 238 P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~~~---~~-~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
|+||||.+++ ++|+++|+++|+||+|....+ .++. .. .+.+++++||||.+|++| ||++++ ++
T Consensus 187 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~-~~ 262 (401)
T 2bwn_A 187 VYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS-AR 262 (401)
T ss_dssp BCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC-HH
T ss_pred CcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecC-HH
Confidence 9999999987 489999999999999983211 1111 11 134899999999999888 999996 88
Q ss_pred HHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 305 VAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 305 ~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++.+...... ...+.+++.+.++.++++.+.. ..+++.+++++++++.+.+.|++. ++.+..+.+
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~- 330 (401)
T 2bwn_A 263 MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKT----------AEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGS- 330 (401)
T ss_dssp HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTS----------HHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSS-
T ss_pred HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCC-
Confidence 98888764321 2344567888888888874321 234678888999999999999887 355444433
Q ss_pred ccccccccCCCCCceEEeecCc--cHHHHHHHH-HhCCEEeecCCCCCC--CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFL-KGNKILTRSGKHFGF--SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l-~~~gI~v~pg~~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+++|+.++. +...+.+.| +++||.++|+..|+. +.+++|++++. +++++++++++|++++
T Consensus 331 -------------~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 331 -------------HIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp -------------SCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred -------------CeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 268888864 445666666 489999999988764 33699999973 8999999999999876
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 398 ~ 398 (401)
T 2bwn_A 398 A 398 (401)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=238.87 Aligned_cols=279 Identities=10% Similarity=0.079 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCC--ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITEN--HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~--~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~ 217 (456)
..+++++++++++. ++ ++|++|+|+++++. ++..++++|| +|++++|+|+. +...++..|.+++.
T Consensus 37 ~~~~~~~la~~~~~------~~~~~~v~~~~g~t~al~-~~~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~ 105 (384)
T 3zrp_A 37 LAYSLKGLRYVMGA------SKNYQPLIIPGGGTSAME-SVTSLLKPND----KILVVSNGVFGDRWEQIFKRYPVNVKV 105 (384)
T ss_dssp HHHHHHHHHHHHTC------CTTSEEEEEESCHHHHHH-HGGGGCCTTC----EEEEECSSHHHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHHhCC------CCCCcEEEEcCCcHHHHH-HHHhhcCCCC----EEEEecCCcchHHHHHHHHHcCCcEEE
Confidence 36788888888764 33 78999999999999 9999999999 99999999965 55667788999887
Q ss_pred eccC------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEe
Q 012785 218 WAGD------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLF 282 (456)
Q Consensus 218 ~~~d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~ 282 (456)
++.| .+.++. .+++++++++||||||.+++ ++|+++|+++|+|++|.......-....+.+++++
T Consensus 106 v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~ 185 (384)
T 3zrp_A 106 LRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLT 185 (384)
T ss_dssp ECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEE
T ss_pred ecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEe
Confidence 7754 344432 26899999999999999987 38999999999999998533221112345789999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHH-------------HHHHh---------hccC-cCChHHHHHHHHHHHhhhCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKM-------------TKYIE---------LNTI-GVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l-------------~~~~~---------~~~~-~~s~~~q~~a~~~L~~~~~~~ 339 (456)
|+||.++ .+.++||++++ +++++++ ..... ...+ +.+...+.++.+.++.+.
T Consensus 186 s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~--- 260 (384)
T 3zrp_A 186 ASQKALG-SAAGLGLLLLS-PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIE--- 260 (384)
T ss_dssp ETTSTTC-CCSSEEEEEEC-HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH---
T ss_pred cCccccc-CCCceEEEEEC-HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHH---
Confidence 9999885 33459999996 8887777 33321 1112 456666666666666321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCE
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKI 418 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI 418 (456)
+..+++.+++++++++.+.+.|+++ ++.+..+.+.. ..+.++|+.++. +.+.+.+.|.++||
T Consensus 261 -------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~gi 323 (384)
T 3zrp_A 261 -------KEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPES---------YSNTVTGVILKVADPQKVLAGTVNEGV 323 (384)
T ss_dssp -------HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGG---------BCSSEEEEECSSSCHHHHHHHHHTTTC
T ss_pred -------hcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccc---------cCccEEEEECCCCCHHHHHHHHHHCCE
Confidence 2337788999999999999999987 45555444110 112367888864 56778888888999
Q ss_pred EeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+++|..+.. +++||++.. +++++++++++|++++
T Consensus 324 ~v~~g~~~~~--~~iRi~~~~~~~~e~i~~~~~~l~~~l 360 (384)
T 3zrp_A 324 EFAPGVHPAF--KYFRIGHMGWVTPNDAIIAISVIERTL 360 (384)
T ss_dssp CCEECCCTTC--CEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCc--CEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 9999875433 899999863 8899999999999876
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=247.54 Aligned_cols=307 Identities=15% Similarity=0.081 Sum_probs=216.1
Q ss_pred CCCCeEEecCCCC--CCC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDP--TMY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.+...+||+.+.| .+. .++.+.+... ..+.........|+. .+ ..+|+++++++++. + ++|++
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~-~~~~~~~~~~~~y~~-~~-----~~~l~~~la~~~g~------~-~~v~~ 91 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALK-EQVEKLLHVSNLYEN-PW-----QEELAHKLVKHFWT------E-GKVFF 91 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHH-HHHHHCSCCCTTBCC-HH-----HHHHHHHHHHTSSS------C-EEEEE
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHH-HHHHhccccCcccCC-HH-----HHHHHHHHHhhcCC------C-CeEEE
Confidence 4567899998865 333 3333333221 112111111224643 34 48999999998742 3 79999
Q ss_pred ccCHHHHHHHHHHH---hc---CCC-CCCCcEEEEeCCCCCChhhhhhhcCCe-------------Eeeec-cCcccccc
Q 012785 169 GTGSTQLFQAALYA---LS---SQD-ASEPISVVSAAPYYSSYPSITDCVKSR-------------LYKWA-GDAKRFNK 227 (456)
Q Consensus 169 t~G~~~al~~~~~~---l~---~~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~~-------------~~~~~-~d~~~l~~ 227 (456)
|+|+++++.+++.+ +. ++| | +|++++|+|+.+...+...+.. +..++ .|.+.++.
T Consensus 92 ~~g~t~a~~~~~~~~~~~~~~~~~g~~----~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 167 (375)
T 2eh6_A 92 ANSGTESVEAAIKLARKYWRDKGKNKW----KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYK 167 (375)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCC----EEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHT
T ss_pred eCchHHHHHHHHHHHHHHhccCCCCCC----EEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHH
Confidence 99999999999875 34 677 8 9999999999988766554322 22222 36666654
Q ss_pred ---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCC--CC-CCCC--CcEEEecCccccCC
Q 012785 228 ---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTS--IT-YPAD--HDLMLFTVSKSTGH 290 (456)
Q Consensus 228 ---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~--~~-~~~~--~~i~i~S~SK~~g~ 290 (456)
.+++++++++||||||.+++ ++|+++|+++|+||+|.+....+ .. ...+ .+++ ||||.++
T Consensus 168 ~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~~- 244 (375)
T 2eh6_A 168 LLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGLG- 244 (375)
T ss_dssp TCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG-
T ss_pred HhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEccccc-
Confidence 36789999999999999854 27899999999999999643322 11 1111 2233 8899999
Q ss_pred CCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 012785 291 AGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK 370 (456)
Q Consensus 291 ~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 370 (456)
+|+|+||++++ +++++.+.......+++.+++.|.++.++|+. +++.+++++++++.+.+.|++
T Consensus 245 ~g~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~l~~~L~~ 308 (375)
T 2eh6_A 245 GGVPIGAILAR-EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDE---------------VEKLLPHVREVGNYFKEKLKE 308 (375)
T ss_dssp TTSCCEEEEEE-HHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 79999999997 78877776533345678899999998888872 115677888899999999988
Q ss_pred cCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHH
Q 012785 371 SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFV 448 (456)
Q Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l 448 (456)
++.. ..+ +.++|+|++++.+...+.+.|.++||.+.|+ +++++||+++ .+++++++++
T Consensus 309 ~~~~-~~~--------------~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~iRi~~~~~~~~~~i~~~~ 368 (375)
T 2eh6_A 309 LGKG-KVK--------------GRGLMLGLELERECKDYVLKALEKGLLINCT-----AGKVLRFLPPLIIQKEHIDRAI 368 (375)
T ss_dssp TTSS-EEE--------------EETTEEEEECSSCCHHHHHHHHHTTEECEEE-----TTTEEEECCCTTCCHHHHHHHH
T ss_pred HhcC-Cce--------------EEEEEEEEEEcCcHHHHHHHHHHCCCEEecC-----CCCEEEEECCCCCCHHHHHHHH
Confidence 6531 111 2233799998755566777788899999985 2789999975 4899999999
Q ss_pred HHHHhhh
Q 012785 449 QRLSKIL 455 (456)
Q Consensus 449 ~~L~~~l 455 (456)
++|++++
T Consensus 369 ~~l~~~l 375 (375)
T 2eh6_A 369 SVLREIL 375 (375)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999874
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=247.28 Aligned_cols=269 Identities=12% Similarity=0.090 Sum_probs=201.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC----------CCCCCcEEEEeCCCCCChhhhhhhc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ----------DASEPISVVSAAPYYSSYPSITDCV 211 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~----------gd~~~~~Vlv~~P~y~~~~~~~~~~ 211 (456)
..++++.++++++ .+++++|+|+++++..+++++..+ ++ +|+++.|+|+++...+...
T Consensus 80 ~~~l~~~la~~~g--------~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~~~~~~ 147 (392)
T 3ruy_A 80 LGPWYEKVAKLTN--------KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRA----EIIVCEDNFHGRTMGAVSM 147 (392)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCC----EEEEETTCCCCSSHHHHHT
T ss_pred HHHHHHHHHHhcC--------CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCc----EEEEEcCCcCCCCHhhhhc
Confidence 3678888887764 469999999999999999987644 56 9999999999887666554
Q ss_pred CCe-------------Eeeecc-Ccccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCC
Q 012785 212 KSR-------------LYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 212 g~~-------------~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~ 265 (456)
+.. +..++. |.+.++. .++++|++++||||||.+++ ++|+++|+++|+||+|.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 227 (392)
T 3ruy_A 148 SSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG 227 (392)
T ss_dssp CSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTT
T ss_pred cCChhhccccCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence 322 333333 5555543 46799999999999999986 278999999999999975
Q ss_pred CCCCC--CC-CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 266 PQYTS--IT-YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 266 ~~~~~--~~-~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
..+.+ .. ...+...-+.||||.++ +| +|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.
T Consensus 228 ~~~~g~~~~~~~~~~~~d~~~~SK~l~-gG~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----- 300 (392)
T 3ruy_A 228 LGRTGKVFACDWDNVTPDMYILGKALG-GGVFPISCAAAN-RDILGVFEPGSHGSTFGGNPLACAVSIAALEVLE----- 300 (392)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEECGGGG-TTTSCCEEEEEC-HHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHH-----
T ss_pred CCccccchhhhccCCCCCEEEEchhhh-CChhhhEEEEEC-HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH-----
Confidence 43322 11 11111122347899887 57 999999996 8888888776666788999999999999998421
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcC--CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEE
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSG--LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKIL 419 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~ 419 (456)
+ ++.+++++++++.+.+.|++++ .+....+ .++|+++.++.+.+.+.+.|.++||.
T Consensus 301 ------~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~l~~~l~~~gi~ 358 (392)
T 3ruy_A 301 ------E--EKLTERSLQLGEKLVGQLKEIDNPMITEVRG--------------KGLFIGIELNEPARPYCEQLKAAGLL 358 (392)
T ss_dssp ------H--TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE--------------ETTEEEEEESSCSHHHHHHHHTTTEE
T ss_pred ------h--hhHHHHHHHHHHHHHHHHHHhcCCCceEEEe--------------eeeEEEEEEcchHHHHHHHHHHCCcE
Confidence 1 4677888999999999998763 2222222 23467777765667788888899999
Q ss_pred eecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l~ 456 (456)
++||. ++++|+++ ..+++++++++++|+++++
T Consensus 359 v~~~~-----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 359 CKETH-----ENVIRIAPPLVISEEDLEWAFQKIKAVLS 392 (392)
T ss_dssp CCCBT-----TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 99964 78999994 3589999999999999874
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=240.31 Aligned_cols=280 Identities=11% Similarity=0.054 Sum_probs=209.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCc-eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENH-HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~-~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~ 218 (456)
..+++++++++++. +++ +|++|+|+++++.+++.++..+|| +|++++|+|+.+. ..++..|++++.+
T Consensus 53 ~~~l~~~la~~~~~------~~~~~v~~~~g~t~al~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 53 MDEVKDGLRYIFQT------ENRATMCVSGSAHAGMEAMLSNLLEEGD----RVLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp HHHHHHHHHHHHTC------CCSCEEEESSCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCcEEEECCcHHHHHHHHHHHhcCCCC----eEEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 47899999999874 445 899999999999999999999999 9999999999985 4778889998877
Q ss_pred ccC------cccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 219 AGD------AKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 219 ~~d------~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
+.| .+.++. . ++++|++++|+||||.+++ ++|+++|+++|+||+|... ..++. ...+.++++.
T Consensus 123 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g-~~~~~~~~~~~d~~~~ 201 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLC-GVPFYMDKWEIDAVYT 201 (396)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBT-TBCCCTTTTTCCEEEC
T ss_pred cCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEcccccc-CCccchhhcCcCEEEE
Confidence 643 344432 2 6789999999999999987 4899999999999999832 22221 2223468889
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHHH-----------------------hhccCcCChHHHHHHHHHHHhhhCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-----------------------ELNTIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-----------------------~~~~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
|++|.++ ++.++||++++ +++++.+.... .....+.+...|.++.++|+.+.
T Consensus 202 s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--- 276 (396)
T 2ch1_A 202 GAQKVLG-APPGITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA--- 276 (396)
T ss_dssp CCC-CCC-CCSSCEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH---
T ss_pred cCCcccc-CCCCeEEEEEC-HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHH---
Confidence 9999765 33456999996 88887765320 11224567788888888887421
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHh-C
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKG-N 416 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~-~ 416 (456)
++++++.+++++++++.+.+.|+++ ++.+..+.+++ ..+.++|+.++. +.+.+.+.|.+ +
T Consensus 277 -------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~L~~~~ 339 (396)
T 2ch1_A 277 -------EEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRH---------RLPTVTGIMIPKGVDWWKVSQYAMNNF 339 (396)
T ss_dssp -------HHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGG---------BCTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred -------HhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccc---------cCCceEEEEcCCCCCHHHHHHHHHHhC
Confidence 3457788999999999999999987 45555554432 112368888752 45667666655 5
Q ss_pred CEEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 417 KILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
||.+++|..+. .++++||++ . .++|++++++++|++++
T Consensus 340 gi~v~~g~~~~-~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l 380 (396)
T 2ch1_A 340 SLEVQGGLGPT-FGKAWRVGIMGECSTVQKIQFYLYGFKESL 380 (396)
T ss_dssp CBCCBCCCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CEEEecCcccc-CCCEEEEECCCCcCCHHHHHHHHHHHHHHH
Confidence 99999987653 378999998 3 27889999999999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=238.12 Aligned_cols=310 Identities=14% Similarity=0.077 Sum_probs=207.1
Q ss_pred cCCC-CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEE
Q 012785 91 DGGE-RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVV 168 (456)
Q Consensus 91 ~~~~-~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~ 168 (456)
..+. +++|++.+.|+.+.++.+.++ +. . |. + ...+++.++++.. .+|.. +++++++
T Consensus 24 ~~g~~~v~~~~~~~~~~~~~~~v~~a-----~~-~------~~---~-----~~~~~~~~~~~~a~~~g~~--~~~~~~~ 81 (374)
T 2aeu_A 24 EKGRDALYDLSGLSGGFLIDEKDKAL-----LN-T------YI---G-----SSYFAEKVNEYGLKHLGGD--ENDKCVG 81 (374)
T ss_dssp HTCGGGCEECSSCCCCCCCCHHHHHH-----HT-S------TT---H-----HHHHHHHHHHHHHHHHTCC--TTEEEEE
T ss_pred ccCccceeeecccCCCCCCCHHHHHH-----HH-H------hc---C-----chHHHHHHHHHHHHHhCCC--CcceEEE
Confidence 3455 689999988777766655543 11 1 11 1 1233344444442 23332 2468999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh---hhhhcCCeEeeeccCcccccc--CCCeE-EEEcCCCCCC
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS---ITDCVKSRLYKWAGDAKRFNK--DGPYI-ELVTSPNNPD 242 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~~~d~~~l~~--~~~~~-i~v~~P~NPt 242 (456)
|+|+++++.+++.++ +|| +|++++|+|+.+.. .++..|++++.+ .|.+.++. .++++ |++++|||||
T Consensus 82 ~~ggt~a~~~~~~~~--~gd----~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-~d~~~l~~~~~~~~~~v~~~~p~npt 154 (374)
T 2aeu_A 82 FNRTSSAILATILAL--KPK----KVIHYLPELPGHPSIERSCKIVNAKYFES-DKVGEILNKIDKDTLVIITGSTMDLK 154 (374)
T ss_dssp ESSHHHHHHHHHHHH--CCS----EEEEECSSSSCCTHHHHHHHHTTCEEEEE-SCHHHHHTTCCTTEEEEEECBCTTSC
T ss_pred EcChHHHHHHHHHhC--CCC----EEEEecCCCCccHHHHHHHHHcCcEEEEe-CCHHHHHhcCCCccEEEEEccCCCCC
Confidence 999999999999988 899 99999999988554 567789998888 77776653 36789 9999999999
Q ss_pred c-ccch-----HHhhhcCcEEEeeecCCCCC----CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH
Q 012785 243 G-SVRQ-----SVVNRSGGILVHDLAYYWPQ----YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY 312 (456)
Q Consensus 243 G-~~~~-----~l~~~~~~~iI~De~y~~~~----~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~ 312 (456)
| ...+ ++|+++|+++|+||+|.... ....+...+.+++++|+||.+ +|+|+||++++ ++++++++..
T Consensus 155 G~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l--~g~~~G~~~~~-~~~~~~l~~~ 231 (374)
T 2aeu_A 155 VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIE 231 (374)
T ss_dssp BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccc--cCcceEEEEEC-HHHHHHHHHh
Confidence 9 4433 38899999999999987421 110011124579999999984 57899999997 8999999887
Q ss_pred HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH----HHHHHHHHHhc---CCccc-cCCCCccc
Q 012785 313 IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR----WKQLRMAVQKS---GLFSV-PELPSQFC 384 (456)
Q Consensus 313 ~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~l~~~L~~~---~~~~~-~~~~g~~~ 384 (456)
......+++++.|.++.+.|+.+ . .+.+++..+..+.. ++.+.+.|... .++.+ ..+.|.+
T Consensus 232 ~~~~~~~~~~~~~~a~~~al~~~--~--------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~- 300 (374)
T 2aeu_A 232 GTKFGLEAQPPLLAGIYRALKNF--N--------LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFV- 300 (374)
T ss_dssp HHTTTCBCCHHHHHHHHHHHHHC--C--------HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEE-
T ss_pred hccccCCCCHHHHHHHHHHHHHH--h--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEE-
Confidence 76555678999999999988742 1 11222222222222 45555555543 12333 3344433
Q ss_pred ccccccCCCCCceEEeecCccH------HHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-C--hhHHHHHHHHHHhhh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQEI------EDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-R--DENYNLFVQRLSKIL 455 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~~~------~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~--~e~i~~~l~~L~~~l 455 (456)
|.|.+++... +.+.++++++||.++||..|...++++||+++. + +++++.+++.|++.+
T Consensus 301 ------------~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l 368 (374)
T 2aeu_A 301 ------------IKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESI 368 (374)
T ss_dssp ------------EEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred ------------EEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHH
Confidence 5565554211 144567778999999998886557799999974 2 224777777777664
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=243.51 Aligned_cols=322 Identities=12% Similarity=0.099 Sum_probs=212.6
Q ss_pred EecCCCCCCCchhHhhhccccccc-ccCccccccccC--CCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 98 NVDHGDPTMYEKYWQKVGDKTTIV-IPGWQSLSYFSD--VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 98 ~l~~g~p~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~--~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
.++.++|++..++.+......... ..+......|.. ..+ ..+++++++++++. ++.|++++ +++
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~la~~~g~-------~~~i~~~s-G~~ 90 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPT-----TDALEKKLAVLERG-------EAGLATAS-GIS 90 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHH-----HHHHHHHHHHHHTC-------SEEEEESS-HHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChH-----HHHHHHHHHHHhCC-------CcEEEECC-HHH
Confidence 477888888776554432211111 001011111321 122 36788888888753 24455555 559
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCCcccc
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPDGSVR 246 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~ 246 (456)
++..++.++.++|| +|++++|+|+.+...+ +..|.+++.++. |.+.++. .+++++++++|+||||.++
T Consensus 91 a~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~ 166 (398)
T 2rfv_A 91 AITTTLLTLCQQGD----HIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLV 166 (398)
T ss_dssp HHHHHHHHHCCTTC----EEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBTTTTBCC
T ss_pred HHHHHHHHHhCCCC----EEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCccc
Confidence 99999999999999 9999999999988776 778999888776 4555543 3678999999999999998
Q ss_pred h-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceE-EEEEEeCHHHHH-HHHHHHhhc-cC
Q 012785 247 Q-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRI-GWALVKDMEVAK-KMTKYIELN-TI 318 (456)
Q Consensus 247 ~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~~~-~l~~~~~~~-~~ 318 (456)
+ ++|+++|+++|+||+|....+.. +...+.++++.|+||.++.+|+|+ ||++++ +++++ .++...... ..
T Consensus 167 ~l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~-~~~~~~~~~~~~~~~~~~ 244 (398)
T 2rfv_A 167 DIETVAGIAHQQGALLVVDNTFMSPYCQQ-PLQLGADIVVHSVTKYINGHGDVIGGIIVGK-QEFIDQARFVGLKDITGG 244 (398)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTTCC-GGGGTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTHHHHTTCC
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCC-chhhCCcEEEEeCcccccCCCCceEEEEEEC-HHHHHHHHHHHHHhCCCC
Confidence 7 48999999999999998643321 122367899999999998899999 999997 77776 666665544 56
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-----CcccccccccCCC
Q 012785 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-----SQFCTFLGRAFEP 393 (456)
Q Consensus 319 ~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----g~~~~~~~~~~~~ 393 (456)
+.+++.|.++.+.|+. ... ..+...++.+.+.+.|++.+.+.....+ .++ .+.......
T Consensus 245 ~~~~~~~~~~~~~l~~-----------~~~----~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~-~~~~~~~~~ 308 (398)
T 2rfv_A 245 CMSPFNAWLTLRGVKT-----------LGI----RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQY-ELGQRQMSL 308 (398)
T ss_dssp CCCHHHHHHHHHHHTT-----------HHH----HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTH-HHHHHHCSS
T ss_pred CCCHHHHHHHHhhhhh-----------HHH----HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccH-HHHHhhCCC
Confidence 7889999988888862 122 2344556677777778765321100000 000 000000012
Q ss_pred CCceEEeecCccHHHHHHHHH---hCCEEeecCCCCC----------------------CCCCeEEEEecC--ChhHHHH
Q 012785 394 QPAFAWLKCEQEIEDCESFLK---GNKILTRSGKHFG----------------------FSPKYVRISMLD--RDENYNL 446 (456)
Q Consensus 394 ~~~f~~~~~~~~~~~~~~~l~---~~gI~v~pg~~fg----------------------~~~~~iRis~~~--~~e~i~~ 446 (456)
.++++++++++..+....++. ..||.+.+|+.|. ..++++|||++. ++++++.
T Consensus 309 ~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~ 388 (398)
T 2rfv_A 309 PGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIIND 388 (398)
T ss_dssp CCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHH
Confidence 355677788743334444444 4488899987642 226899999976 5677888
Q ss_pred HHHHHHhh
Q 012785 447 FVQRLSKI 454 (456)
Q Consensus 447 ~l~~L~~~ 454 (456)
+++.|+++
T Consensus 389 l~~al~~~ 396 (398)
T 2rfv_A 389 LEHAIRKA 396 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88887764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=244.43 Aligned_cols=324 Identities=13% Similarity=0.077 Sum_probs=215.2
Q ss_pred CCeEEecCC-CCCCCchhHhhhccccccccc-CccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEcc
Q 012785 94 ERIINVDHG-DPTMYEKYWQKVGDKTTIVIP-GWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGT 170 (456)
Q Consensus 94 ~~~i~l~~g-~p~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~ 170 (456)
..+|+|+.| +|+++.++.+.+..... ... .......|+. .| .+ +++++++++.. .| .+++++++
T Consensus 89 ~~~i~l~~g~~~~~~~~~~i~~a~~~~-~~~~~~~~~~~Y~~-~g-----~~-~~~~l~~~la~~~g-----~~~~i~~~ 155 (464)
T 1ibj_A 89 TLLVNLDNKFDPFDAMSTPLYQTATFK-QPSAIENGPYDYTR-SG-----NP-TRDALESLLAKLDK-----ADRAFCFT 155 (464)
T ss_dssp HHHTCCCCSSCTTCCSSCCCCCCSBCC-CSSSSCCCSCSBTT-TC-----CH-HHHHHHHHHHHHHT-----CSEEEEES
T ss_pred CeEEECCCCCCCCCCCCccHHhhhhhh-hhcccccCCccccC-CC-----CH-HHHHHHHHHHHHhC-----CCeEEEEC
Confidence 357899997 88888776555432211 000 1111234653 44 34 67777776643 33 13666777
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEeeecc-Ccccccc---CCCeEEEEcCCCCCC
Q 012785 171 GSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYKWAG-DAKRFNK---DGPYIELVTSPNNPD 242 (456)
Q Consensus 171 G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~~~-d~~~l~~---~~~~~i~v~~P~NPt 242 (456)
|+++++.+++. ++++|| +|++++|+|+.+... ++..|.+++.++. |.+.++. .++++|++++|||||
T Consensus 156 sGt~al~~~l~-~~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~Npt 230 (464)
T 1ibj_A 156 SGMAALSAVTH-LIKNGE----EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPR 230 (464)
T ss_dssp SHHHHHHHHHT-TSCTTC----EEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTT
T ss_pred CHHHHHHHHHH-HhCCCC----EEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCC
Confidence 77889998886 778999 999999999998753 5677999888776 5555543 467999999999999
Q ss_pred cccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccccCC-CCceEEEEEEeCHHHHHHHHHHHhh
Q 012785 243 GSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKSTGH-AGTRIGWALVKDMEVAKKMTKYIEL 315 (456)
Q Consensus 243 G~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~~g~-~G~RiG~l~~~~~~~~~~l~~~~~~ 315 (456)
|.+++ ++|+++|+++|+||+|..+.. .++ ..+++++++|+||.++. +|+|+||++++++++++.+......
T Consensus 231 G~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~--~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~ 308 (464)
T 1ibj_A 231 QQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS 308 (464)
T ss_dssp CCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG--GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHH
T ss_pred CEeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHh
Confidence 99987 489999999999999986432 233 24689999999998864 4999999999756888888887665
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcc---ccCC--CCccccccccc
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFS---VPEL--PSQFCTFLGRA 390 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~---~~~~--~g~~~~~~~~~ 390 (456)
...+.+++.|.++.+.|+.. ...+++ ..++...+.+.|++.+.+. ...- ..++ .+....
T Consensus 309 ~g~~~~~~~~~a~~~al~~~-----------~~r~~~----~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~-~~~~~~ 372 (464)
T 1ibj_A 309 EGSGLAPFDCWLCLRGIKTM-----------ALRIEK----QQENARKIAMYLSSHPRVKKVYYAGLPDHPGH-HLHFSQ 372 (464)
T ss_dssp TTCBCCHHHHHHHHHHHTTH-----------HHHHHH----HHHHHHHHHHHHHTCTTCCEEECTTSTTSTTH-HHHTTT
T ss_pred cCCCCCHHHHHHHHhchhhH-----------HHHHHH----HHHHHHHHHHHHHhCCCceEEECCCCCCCcch-HHHhcc
Confidence 56778899999888877621 122222 2233334445555432110 0000 0011 000000
Q ss_pred CCCCCceEEeecCcc--HHHHHHHHHhCCEEeecCC------------CC----------CCCCCeEEEEecCChhHHHH
Q 012785 391 FEPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGK------------HF----------GFSPKYVRISMLDRDENYNL 446 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~--~~~~~~~l~~~gI~v~pg~------------~f----------g~~~~~iRis~~~~~e~i~~ 446 (456)
....++++++.+++. .+.+.+.|+..||.+++|. +| |..++++||+++. |++++
T Consensus 373 ~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~ 450 (464)
T 1ibj_A 373 AKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDD 450 (464)
T ss_dssp CSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHH
T ss_pred CCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHH
Confidence 011345788888642 2346666777899999986 22 2236799999976 89999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 451 li~~L~~al 459 (464)
T 1ibj_A 451 LISDLDIAF 459 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=245.05 Aligned_cols=277 Identities=14% Similarity=0.111 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhc---CCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCV---KSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~ 215 (456)
.++++.++++++. ++++|++|+|+++++.++++++.. +|| +|+++.|+|+.+...+..+ |.++
T Consensus 71 ~~l~~~la~~~~~------~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~ 140 (423)
T 3lvm_A 71 DIARNQIADLVGA------DPREIVFTSGATESDNLAIKGAANFYQKKGK----HIITSKTEHKAVLDTCRQLEREGFEV 140 (423)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESSHHHHHHHHHHHHHHHHTTTCC----EEEEETTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CCCeEEEeCChHHHHHHHHHHHHHhhccCCC----EEEECCccchHHHHHHHHHHHcCCEE
Confidence 6788888888754 457999999999999999998874 788 9999999999988777544 9998
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLML 281 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i 281 (456)
+.++.| .+.++. .+++++++++|+||||.+++ ++|+++|+++|+||+|.......-....+.++++
T Consensus 141 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~ 220 (423)
T 3lvm_A 141 TYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 220 (423)
T ss_dssp EEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEE
T ss_pred EEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEE
Confidence 877764 444432 36789999999999999987 4899999999999999863321111234578999
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHh-------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE-------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~-------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
+|+||.+|.+| +||++++ ++..+.+..... ......+...+.++.++++.+ ++++++.+
T Consensus 221 ~s~sK~~g~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~~~~~ 286 (423)
T 3lvm_A 221 FSGHKIYGPKG--IGALYVR-RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA-----------KEEMATEM 286 (423)
T ss_dssp EESTTTTSCSS--CEEEEEC-BTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred echHHhcCCCC--eEEEEEe-ccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 99999888777 8999997 555554443321 223455667777666766632 34578899
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC----
Q 012785 355 HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS---- 429 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~---- 429 (456)
++++++++.+.+.|++++++.+..+.+.. .++++++.++. +.+.+.+.|.+ |.+.+|..|...
T Consensus 287 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~ 354 (423)
T 3lvm_A 287 ERLRGLRNRLWNGIKDIEEVYLNGDLEHG----------APNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEP 354 (423)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEESCSTTB----------CTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCcccc----------CCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccc
Confidence 99999999999999888666665544311 11245555543 56667777766 999999876431
Q ss_pred --------------CCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 430 --------------PKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 --------------~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+++||++.. +++++++++++|++++
T Consensus 355 ~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~ 396 (423)
T 3lvm_A 355 SYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSI 396 (423)
T ss_dssp CHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4899999974 7899999999999875
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-28 Score=239.92 Aligned_cols=278 Identities=13% Similarity=0.057 Sum_probs=204.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh--hhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY--PSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~ 219 (456)
..+++++++++++. ++++|++|+|+++++.++++++.++|| +|++++|+|+.+ ...++..|.+++.++
T Consensus 44 ~~~l~~~la~~~g~------~~~~v~~t~g~t~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 113 (392)
T 2z9v_A 44 YEKVVDKAQKAMRL------SNKPVILHGEPVLGLEAAAASLISPDD----VVLNLASGVYGKGFGYWAKRYSPHLLEIE 113 (392)
T ss_dssp HHHHHHHHHHHTTC------SSCCEEESSCTHHHHHHHHHHHCCTTC----CEEEEESSHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCEEEEeCCchHHHHHHHHHhcCCCC----EEEEecCCcccHHHHHHHHHcCCceEEee
Confidence 47899999998863 357999999999999999999999999 999999999875 344455798888776
Q ss_pred cC------cccccc-----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 220 GD------AKRFNK-----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 220 ~d------~~~l~~-----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
.| .+.++. .++++|++++|+||||.+++ ++|+++|+++|+||+|..... ++. ...+.+++++
T Consensus 114 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~~d~~~~ 192 (392)
T 2z9v_A 114 VPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGM-KTHPEDCKADIYVT 192 (392)
T ss_dssp CCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTB-SCCGGGGTCSEEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCc-ccccccccceEEEe
Confidence 54 333321 36789999999999999987 489999999999999974221 211 1224689999
Q ss_pred cCcccc-CCCCceEEEEEEeCHHHHHHHHHHH--------------------hhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 283 TVSKST-GHAGTRIGWALVKDMEVAKKMTKYI--------------------ELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 283 S~SK~~-g~~G~RiG~l~~~~~~~~~~l~~~~--------------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
|+||.+ |.+|+ ||++++ ++++++++... .....+.+...+.++.++++.+
T Consensus 193 s~sK~~~~~~g~--G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------ 263 (392)
T 2z9v_A 193 GPNKCLGAPPGL--TMMGVS-ERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY------ 263 (392)
T ss_dssp CSSSTTCCCSCC--EEEEEC-HHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH------
T ss_pred cCcccccCCCce--eEEEEC-HHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH------
Confidence 999955 45564 999997 88888876421 1112344555666666666632
Q ss_pred CCCcchhH-HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-C
Q 012785 342 SGSEDECF-FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-K 417 (456)
Q Consensus 342 ~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-g 417 (456)
.++ +++.+++++++++.+.+.|+++ ++.+..|..+. ..++++|+.++. +.+.+.+.|.++ |
T Consensus 264 -----~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~g 328 (392)
T 2z9v_A 264 -----LNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSI---------ASPTTTAVRTPDGVDEKALRQAARARYG 328 (392)
T ss_dssp -----HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGG---------BCTTEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred -----HhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccc---------cCCceEEEECCCCCCHHHHHHHHHhcCC
Confidence 233 6778899999999999999887 45554422110 122368888852 456677777776 9
Q ss_pred EEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
|.+++|..+. .++++||++ + .+++++++++++|++++
T Consensus 329 i~v~~g~~~~-~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~ 368 (392)
T 2z9v_A 329 VVFSSGRGET-LGKLTRIGHMGPTAQPIYAIAALTALGGAM 368 (392)
T ss_dssp EECEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCC-CCCeEEEeCcccccCHHHHHHHHHHHHHHH
Confidence 9999998654 378999994 5 48999999999998875
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=244.37 Aligned_cols=287 Identities=12% Similarity=0.083 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh---cCCCCCCCcEEEEeCCCCCChhhhhhh----cCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL---SSQDASEPISVVSAAPYYSSYPSITDC----VKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~ 214 (456)
..+++++++++++. ++++|++|+|+++++.+++.++ ..+|| +|+++.|+|+.+...+.. .|.+
T Consensus 71 ~~~l~~~la~~~g~------~~~~v~~~~g~t~al~~~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~ 140 (406)
T 3cai_A 71 LDAAREAVADLVNA------DPGGVVLGADRAVLLSLLAEASSSRAGLGY----EVIVSRLDDEANIAPWLRAAHRYGAK 140 (406)
T ss_dssp HHHHHHHHHHHHTC------CGGGEEEESCHHHHHHHHHHHTGGGGBTTC----EEEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred HHHHHHHHHHHhCC------CCCeEEEeCChHHHHHHHHHHHhhccCCCC----EEEEcCCccHHHHHHHHHHHHhcCCe
Confidence 47899999999863 4578999999999999999987 78899 999999999987665544 6998
Q ss_pred EeeeccC-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCc
Q 012785 215 LYKWAGD-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHD 278 (456)
Q Consensus 215 ~~~~~~d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~ 278 (456)
++.++.| .+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..... ++. ...+.+
T Consensus 141 v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~~d 219 (406)
T 3cai_A 141 VKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYR-LLDIRETDAD 219 (406)
T ss_dssp EEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTC-CCCHHHHCCS
T ss_pred EEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC-CCCchhcCCC
Confidence 8877654 344432 36789999999999999987 489999999999999984221 121 123578
Q ss_pred EEEecCccccCCCCceEE-EEEEeCHHHHHHHHHHHh---------hccCcCChHHHHHHHHHHHhhhCCCC--CCC--C
Q 012785 279 LMLFTVSKSTGHAGTRIG-WALVKDMEVAKKMTKYIE---------LNTIGVSKDSQLRAAKVLKVVSDSCK--PSG--S 344 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG-~l~~~~~~~~~~l~~~~~---------~~~~~~s~~~q~~a~~~L~~~~~~~~--~~~--~ 344 (456)
++++|+||.+| ++ +| |++++ ++++++++.... ......+...+.++.++++.+.+... .+. .
T Consensus 220 ~~~~s~~K~~g-~~--~G~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 295 (406)
T 3cai_A 220 VVTVNAHAWGG-PP--IGAMVFRD-PSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRE 295 (406)
T ss_dssp EEEEEGGGGTS-CS--CEEEEESC-HHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHH
T ss_pred EEEeehhhhcC-CC--cCeEEEEe-hHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhh
Confidence 99999999887 65 99 99996 888776654421 11234566666566666664332100 000 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecC
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg 423 (456)
.+++++++.+++++++++.+.+.|++++++.+..+.+.. ++++++.++. +.+.+.+.|.++||.+++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g 364 (406)
T 3cai_A 296 RLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQ-----------IPVVSFAVHKVPADRVVQRLADNGILAIAN 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSB-----------CSEEEEEETTBCHHHHHHHHHHTTEECEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCcccc-----------CCEEEEEECCcCHHHHHHHHHHCCcEEecC
Confidence 011257888999999999999999987656554443211 2257777753 5667888888999999999
Q ss_pred C------CCCC--CCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 424 K------HFGF--SPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 424 ~------~fg~--~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
. .||. ..+++||++.. +++++++++++|+++
T Consensus 365 ~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 365 TGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp CSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred ChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 7 4553 25899999976 789999999999875
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=248.04 Aligned_cols=282 Identities=10% Similarity=0.000 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--------CCCCCCCcEEEEeCCCCCChhhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--------SQDASEPISVVSAAPYYSSYPSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~ 214 (456)
.++++++++++...-. . +.++|++|+|+++++..+++++. .+++ +|++.+|+|+++...+...+..
T Consensus 71 ~~~~~~l~~~la~~~~-~-~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~~~ 144 (430)
T 3i4j_A 71 SDVLEEYAGRLARFVG-L-PTFRFWAVSGGSEATESAVKLARQYHVERGEPGRF----KVITRVPSYHGASLGSLAASGM 144 (430)
T ss_dssp EHHHHHHHHHHHHHTT-C-TTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTC--------------
T ss_pred CHHHHHHHHHHHHhCC-C-CCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc----EEEEEeCCcCCCCcccccccCc
Confidence 5566666666533211 1 34699999999999999999886 3456 9999999999988766554432
Q ss_pred ---------------Eeeecc---------Ccccccc-------CCCeEEEEcCCCC-CCcccch---------HHhhhc
Q 012785 215 ---------------LYKWAG---------DAKRFNK-------DGPYIELVTSPNN-PDGSVRQ---------SVVNRS 253 (456)
Q Consensus 215 ---------------~~~~~~---------d~~~l~~-------~~~~~i~v~~P~N-PtG~~~~---------~l~~~~ 253 (456)
+..++. |.+.++. .++++++++.+|| |+|.... ++|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~ 224 (430)
T 3i4j_A 145 GARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA 224 (430)
T ss_dssp -----------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred cccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence 112221 1133321 2335555544466 8887543 279999
Q ss_pred CcEEEeeecCCCCCCCCCC---CCC-CCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH----HhhccCcCChHH
Q 012785 254 GGILVHDLAYYWPQYTSIT---YPA-DHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY----IELNTIGVSKDS 324 (456)
Q Consensus 254 ~~~iI~De~y~~~~~~~~~---~~~-~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~----~~~~~~~~s~~~ 324 (456)
|+++|+||+|.+..+.+.. ... +...-+.||||+++ +| +|+||++++ +++++.+.+. ....+++.++++
T Consensus 225 ~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~-~G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~t~~~~~~~ 302 (430)
T 3i4j_A 225 GIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLA-AGYAPLAGLLAA-PQVYETVMGGSGAFMHGFTYAGHPVS 302 (430)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGT-TTSSCCEEEEEC-HHHHHHHHHTTCBCCCCCTTTTCHHH
T ss_pred CCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEccccc-CCccccEEEEEC-HHHHHHHhccCCcccccCCCCCCHHH
Confidence 9999999999965333211 111 22222457999999 69 999999996 9999999874 445678999999
Q ss_pred HHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc
Q 012785 325 QLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ 404 (456)
Q Consensus 325 q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~ 404 (456)
|.++.++|+.+.+ ++++++.++..+..++.+.+.+++++.+...++.| +|+|+.+.+
T Consensus 303 ~aaa~aal~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g--------------~~~~~~~~~ 359 (430)
T 3i4j_A 303 VAAGLSVLDIVER---------EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTG--------------LLLGVVLGD 359 (430)
T ss_dssp HHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET--------------TEEEEEEC-
T ss_pred HHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEE--------------EEEEEEecc
Confidence 9999999985433 24555566666666666666655555444444333 367777642
Q ss_pred -----------cHHHHHHHHHhCCEEeecCCCC--CCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 405 -----------EIEDCESFLKGNKILTRSGKHF--GFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 -----------~~~~~~~~l~~~gI~v~pg~~f--g~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
....+.+.|.++||.++|+..+ +.+++++||+++ .++|++++++++|++++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 425 (430)
T 3i4j_A 360 LATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGAL 425 (430)
T ss_dssp -----------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 1256778888999999998433 335789999987 48999999999999876
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=249.83 Aligned_cols=315 Identities=11% Similarity=0.007 Sum_probs=207.0
Q ss_pred CCCCeEEecCCCC--CC-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDP--TM-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p--~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.+...+|+..+.+ ++ ..++.+.+... ..+.........|.+..+ ..+|+++|+++++ | . .+++|++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~-~~~~~~~~~~~~~~~~~~-----~~~l~~~la~~~~--~-~--~~~~v~~ 107 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVE-AQLKKLSHTCFQVLAYEP-----YLELCEIMNQKVP--G-D--FAKKTLL 107 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHH-HHTTTCSCCCTTTEECHH-----HHHHHHHHHHHSS--C-S--SCEEEEE
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHH-HHHHhCCCccccccCCHH-----HHHHHHHHHHhCC--c-c--cccEEEE
Confidence 4566889877763 22 12333333211 112211111112333345 4899999999983 2 1 2479999
Q ss_pred ccCHHHHHHHHHH---HhcCCCCCCCcEEEEeCCCCCChhh-hhhhcCCe-------------Eeeecc-----------
Q 012785 169 GTGSTQLFQAALY---ALSSQDASEPISVVSAAPYYSSYPS-ITDCVKSR-------------LYKWAG----------- 220 (456)
Q Consensus 169 t~G~~~al~~~~~---~l~~~gd~~~~~Vlv~~P~y~~~~~-~~~~~g~~-------------~~~~~~----------- 220 (456)
|+|++++++++++ .+.+++ +|++++|+|+++.. .....|.+ ++.++.
T Consensus 108 ~~g~~~a~~~~~~~a~~~~~~~-----~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 182 (426)
T 1sff_A 108 VTTGSEAVENAVKIARAATKRS-----GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDD 182 (426)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCC-----EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHH
T ss_pred eCchHHHHHHHHHHHHHhhCCC-----eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHH
Confidence 9999999999988 666664 79999999998764 44544532 332332
Q ss_pred Ccccccc--------CCCeEEEE-cCCCCCCc-ccch--------HHhhhcCcEEEeeecCCCCCCCCC--C-CCCCCcE
Q 012785 221 DAKRFNK--------DGPYIELV-TSPNNPDG-SVRQ--------SVVNRSGGILVHDLAYYWPQYTSI--T-YPADHDL 279 (456)
Q Consensus 221 d~~~l~~--------~~~~~i~v-~~P~NPtG-~~~~--------~l~~~~~~~iI~De~y~~~~~~~~--~-~~~~~~i 279 (456)
|.+.++. .++++|++ ++|+| || .+++ ++|+++|+++|+||+|.+..+.+. . ...+..+
T Consensus 183 d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 261 (426)
T 1sff_A 183 AIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAP 261 (426)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCC
T ss_pred HHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCC
Confidence 3344431 24566666 45678 99 5554 389999999999999996433221 1 1223334
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
.+.||||.+|. |+|+||++++ +++++.+.......+++.+++.|.++.++|+.+.++ ...+++++
T Consensus 262 di~s~sK~~~~-GlriG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~-------------~~~~~~~~ 326 (426)
T 1sff_A 262 DLTTFAKSIAG-GFPLAGVTGR-AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQE-------------NLLQKAND 326 (426)
T ss_dssp SEEEECGGGGT-SSCCEEEEEE-HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHT-------------THHHHHHH
T ss_pred CEEEEcccccC-CCceEEEEEc-HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhc-------------CHHHHHHH
Confidence 46699999995 9999999997 888887765444467888999999999888754332 23445556
Q ss_pred HHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEEeecCCC
Q 012785 360 RWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 360 ~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~v~pg~~ 425 (456)
+++.+.+.|+++ +.+...++ .++|+|++++. +...+.+.|.++||.++||..
T Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~ 392 (426)
T 1sff_A 327 LGQKLKDGLLAIAEKHPEIGDVRG--------------LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP 392 (426)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEE--------------ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEE--------------EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC
Confidence 666666666543 22211222 23489998841 245677778889999999876
Q ss_pred CCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 426 FGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
| ++++||+++ .+++++++++++|++++
T Consensus 393 ~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l 421 (426)
T 1sff_A 393 Y---YNVLRILVPLTIEDAQIRQGLEIISQCF 421 (426)
T ss_dssp T---SCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred C---CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 4 679999985 48999999999999875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=238.98 Aligned_cols=314 Identities=12% Similarity=0.112 Sum_probs=222.2
Q ss_pred CCCCeEEecCCCCC-CCchhHhhhccccccccc---Ccc-ccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHGDPT-MYEKYWQKVGDKTTIVIP---GWQ-SLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g~p~-~~~~~~~~~~~~~~~~~~---~~~-~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
.++.++||+.+++. +..++.+.++.. ..+.. +.. ....|+.... ..+|+++++++++. +..+
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~-~~l~~~~~~~~~~~~~~g~~~~-----~~~l~~~la~~~g~-------~~~i 123 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLA-KSLLEEQQSLFMSASFLQNDYD-----KPMIEKRLAKFTGF-------DECL 123 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHH-HHHHSCCCCCCSBGGGGCSTTT-----SCHHHHHHHHHHTC-------SEEE
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHH-HHHHHcCCCCCccccccCCcHH-----HHHHHHHHHHHhCC-------CeEE
Confidence 45678999887643 333444443222 11221 110 0112222222 47899999999863 3355
Q ss_pred EEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-Ccccccc----CCCeEEEEcCCCCC
Q 012785 167 VVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG-DAKRFNK----DGPYIELVTSPNNP 241 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~----~~~~~i~v~~P~NP 241 (456)
++++| ++++..++.+++++|| .|++++|+|+.+...++..|.+++.++. |.+.++. .+++++++++||||
T Consensus 124 ~~~sG-t~a~~~~l~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~np 198 (409)
T 3kki_A 124 LSQSG-WNANVGLLQTICQPNT----NVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYST 198 (409)
T ss_dssp EESCH-HHHHHHHHHHHCCTTC----EEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTT
T ss_pred Eecch-HHHHHHHHHHhcCCCC----EEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCC
Confidence 55555 6999999999999999 9999999999999999999999988763 6666543 25789999999999
Q ss_pred Ccccch-----HHhhhcCcEEEeeecCCCCCC--CCCC-----C-CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQ-----SVVNRSGGILVHDLAYYWPQY--TSIT-----Y-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~-----~l~~~~~~~iI~De~y~~~~~--~~~~-----~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++ ++|+++|+++|+||+|.+..+ .+.. . ..+.+|++.||||.++.+| ||++++ +++++.
T Consensus 199 tG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~v~~~-~~~~~~ 274 (409)
T 3kki_A 199 LGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCN-NEVNRC 274 (409)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEES-SSGGGT
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCc---eEEEEC-HHHHHH
Confidence 999987 489999999999999976222 1110 1 1245799999999999554 999996 778777
Q ss_pred HHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 309 MTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 309 l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
+...... ...+.++..+.++.+.++.+ +..+..++.++++++.+.+.|++.+ +.+. .++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~aa~~aal~~~------------~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~~~---- 335 (409)
T 3kki_A 275 VPFISYPAIFSSTLLPYEAAGLETTLEII------------ESADNRRQHLDRMARKLRIGLSQLG-LTIR--SES---- 335 (409)
T ss_dssp HHHHCHHHHHSBCCCHHHHHHHHHHHHHH------------HHCHHHHHHHHHHHHHHHHHHHTTT-CCCC--CSS----
T ss_pred HHHhCcCccccCCCcHHHHHHHHHHHHHH------------hcCHHHHHHHHHHHHHHHHHHHHcC-CccC--CCC----
Confidence 7664322 23345666777777777632 1225788889999999999999874 3332 122
Q ss_pred ccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 387 LGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+++|+.++. +...+.+.|.++||.+.|+..+. .+.+++||+++. +++++++++++|++++
T Consensus 336 ---------~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 336 ---------QIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp ---------SEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------CEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 378888754 34567778888899999865432 246799999973 8899999999999876
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=235.55 Aligned_cols=278 Identities=10% Similarity=0.049 Sum_probs=204.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCC-ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITEN-HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~-~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~ 218 (456)
..+++++++++++. ++ ++|++|+|+++++.+++.++.++|| +|++++|+|+.+. ..++..|.+++.+
T Consensus 54 ~~~l~~~la~~~g~------~~~~~i~~~~g~t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v 123 (393)
T 2huf_A 54 MDDIKEGVRYLFQT------NNIATFCLSASGHGGMEATLCNLLEDGD----VILIGHTGHWGDRSADMATRYGADVRVV 123 (393)
T ss_dssp HHHHHHHHHHHHTC------CCSEEEEESSCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCC------CCCcEEEEcCcHHHHHHHHHHHHhCCCC----EEEEECCCcchHHHHHHHHHcCCeeEEE
Confidence 47899999998864 33 3899999999999999999999999 9999999998743 3456679988877
Q ss_pred cc------Ccccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 219 AG------DAKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 219 ~~------d~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
+. |.+.++. . ++++|++++||||||.+++ ++|+++|+++|+|+++.... .++. ...+.+++++
T Consensus 124 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~-~~~~~~~~~~d~~~~ 202 (393)
T 2huf_A 124 KSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGG-APMFMDRWEIDAMYT 202 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT-BCCCTTTTTCSEEEC
T ss_pred eCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCC-CCcchhhcCccEEEE
Confidence 64 3444432 2 6789999999999999987 48999999999999987422 1221 2335789999
Q ss_pred cCccc-cCCCCceEEEEEEeCHHHHHHHHHHH----h------------------hcc-CcCChHHHHHHHHHHHhhhCC
Q 012785 283 TVSKS-TGHAGTRIGWALVKDMEVAKKMTKYI----E------------------LNT-IGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 283 S~SK~-~g~~G~RiG~l~~~~~~~~~~l~~~~----~------------------~~~-~~~s~~~q~~a~~~L~~~~~~ 338 (456)
|+||. +|++|+ ||++++ +++++.+.... . ... .+.+...+.++.++++.+.
T Consensus 203 s~sK~l~g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-- 277 (393)
T 2huf_A 203 GSQKVLGAPPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMAC-- 277 (393)
T ss_dssp CSSSTTCCCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHH--
T ss_pred CCCcccccCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHH--
Confidence 99997 567887 999996 98988887541 0 001 2345566666666776321
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHH-h
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLK-G 415 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~-~ 415 (456)
+..+++.+++++++++.+.+.|+++ ++.+..+.+.. .+.++|++++. +.+.+.+.|. +
T Consensus 278 --------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~ 338 (393)
T 2huf_A 278 --------EEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDR----------LSTVTTIKVPQGVDWLKAAQYAMKT 338 (393)
T ss_dssp --------HHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGB----------CTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred --------HhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccc----------CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 1236778889999999999999987 45554432210 11267788752 4566766665 4
Q ss_pred CCEEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 416 NKILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 416 ~gI~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
+||.+++|..|. .++++||++ . .+++++++++++|++++
T Consensus 339 ~gi~v~~g~~~~-~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~ 380 (393)
T 2huf_A 339 YLVEISGGLGPT-AGQVFRIGLMGQNATTERVDRVLQVFQEAV 380 (393)
T ss_dssp HCEECBCCCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCEEEecCcccc-cCCEEEEEcccCcCCHHHHHHHHHHHHHHH
Confidence 699999998764 378999999 5 36788999999999875
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=241.24 Aligned_cols=276 Identities=14% Similarity=0.109 Sum_probs=204.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhh---cCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDC---VKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~---~g~~ 214 (456)
..+++++++++++. ++++|++|+|+++++.+++.++. ++|| +|++++|+|+.+...+.. .|++
T Consensus 45 ~~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~ 114 (382)
T 4eb5_A 45 VQEAREKVAKLVNG------GGGTVVFTSGATEANNLAIIGYAMRNARKGK----HILVSAVEHMSVINPAKFLQKQGFE 114 (382)
T ss_dssp HHHHHHHHHHHHTC------TTEEEEEESSHHHHHHHHHHHHHHHHGGGCC----EEEEETTCCHHHHHHHHHHTTTTCE
T ss_pred HHHHHHHHHHHhCC------CCCeEEEcCchHHHHHHHHHHHHhhccCCCC----EEEECCCcchHHHHHHHHHHhCCcE
Confidence 47888888888863 35799999999999999999998 8999 999999999988766653 6888
Q ss_pred EeeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 215 LYKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 215 ~~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
++.++.| .+.++. .++++|++++|+||||.+++ ++|+++|++ |+|++|.... .++. ...+.++
T Consensus 115 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~-~~~~~~~~~~di 192 (382)
T 4eb5_A 115 VEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQ-IEVDVEKIGADM 192 (382)
T ss_dssp EEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTT-BCCCHHHHTCSE
T ss_pred EEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCC-cccCccccCCCE
Confidence 8877754 344432 35789999999999999987 489999999 9999998321 2221 1125689
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHH-------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY-------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
+++|+||.+|.+| +||++++ ++. .+... ......+.+...+.++.++++.+ ++.+++
T Consensus 193 ~~~s~sK~~g~~g--~G~~~~~-~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-----------~~~~~~ 256 (382)
T 4eb5_A 193 LTISSNDIYGPKG--VGALWIR-KEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT-----------AMEWRE 256 (382)
T ss_dssp EEEETGGGTCCSS--CEEEEEE-TTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred EEeehHHhcCCCc--eEEEEEc-ccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHH-----------HHhHHH
Confidence 9999999988667 7999998 432 11111 11223445666666666666632 345778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC---
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF--- 428 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~--- 428 (456)
.+++++++++.+.+.|++++++.+..+.+.. .++++++.+++ +.+.+.+.|.++||.+++|..|..
T Consensus 257 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~ 326 (382)
T 4eb5_A 257 EAERLRRLRDRIIDNVLKIEESYLNGHPEKR----------LPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTL 326 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEECSCSSSB----------CTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEeCCcccC----------CCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCC
Confidence 8999999999999999887556555443210 13367777753 566778888899999999986532
Q ss_pred ---------------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 ---------------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ---------------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.++++||++.. +++++++++++|++++
T Consensus 327 ~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 370 (382)
T 4eb5_A 327 QPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp CCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 25799999973 8999999999998875
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=238.87 Aligned_cols=266 Identities=17% Similarity=0.152 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-------CC-CCCCcEEEEeCCCCCChhhhhhhcCC-
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-------QD-ASEPISVVSAAPYYSSYPSITDCVKS- 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-------~g-d~~~~~Vlv~~P~y~~~~~~~~~~g~- 213 (456)
.++++.++++++ .++|++|+|+++++.++++++.. +| | +|++++|+|+.+...+...+.
T Consensus 84 ~~l~~~la~~~~--------~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~----~vi~~~~~y~~~~~~~~~~~~~ 151 (406)
T 4adb_A 84 LRLAKKLIDATF--------ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKS----GIVAFKNAFHGRTLFTVSAGGQ 151 (406)
T ss_dssp HHHHHHHHHHSS--------CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCC----EEEEETTCCCCSSHHHHHHSSC
T ss_pred HHHHHHHHhhCC--------CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc----EEEEECCCcCCCcHHHhhccCC
Confidence 566666666652 35999999999999999998864 55 7 999999999999766665543
Q ss_pred ------------eEeeec-cCcccccc---CCCeEEEEcCCCCCCcccc--h--------HHhhhcCcEEEeeecCCCCC
Q 012785 214 ------------RLYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVR--Q--------SVVNRSGGILVHDLAYYWPQ 267 (456)
Q Consensus 214 ------------~~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~--~--------~l~~~~~~~iI~De~y~~~~ 267 (456)
++..++ .|.+.++. .++++++++ |+||||.++ + ++|+++|+++|+||+|.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~ 230 (406)
T 4adb_A 152 PAYSQDFAPLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVG 230 (406)
T ss_dssp GGGTGGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ccccccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 222232 25565554 367888887 999999976 3 37999999999999998643
Q ss_pred CCCCC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 268 YTSIT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 268 ~~~~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
+.+.. .....+++ ||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.+.|+.+.
T Consensus 231 ~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------ 300 (406)
T 4adb_A 231 RTGELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLAT-EECARVMTVGTHGTTYGGNPLASAVAGKVLELIN------ 300 (406)
T ss_dssp TTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEEC-HHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS------
T ss_pred ccchhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEEc-HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH------
Confidence 33211 01112222 7899999 99999999996 9998888776666788999999999999988431
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCC-cc-ccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhC
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGL-FS-VPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGN 416 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~~-~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~ 416 (456)
+ ++.+++++++++.+.+.|++... +. +... ...++++|+.++. +...+.+.|.++
T Consensus 301 -----~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (406)
T 4adb_A 301 -----T--PEMLNGVKQRHDWFVERLNTINHRYGLFSEV------------RGLGLLIGCVLNADYAGQAKQISQEAAKA 361 (406)
T ss_dssp -----S--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE------------EEETTEEEEEECTTTTTCHHHHHHHHHHT
T ss_pred -----h--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEE------------EEEEEEEEEEEeCCcHHHHHHHHHHHHHC
Confidence 1 45677788888888888876421 10 1101 1123378888865 467788888889
Q ss_pred CEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 417 KILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
||.++|+. ++++|++ +..+++++++++++|++++
T Consensus 362 gi~v~~~~-----~~~iRi~~~~~~~~e~i~~~~~~l~~~l 397 (406)
T 4adb_A 362 GVMVLIAG-----GNVVRFAPALNVSEEEVTTGLDRFAAAC 397 (406)
T ss_dssp TEECEESS-----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEeecC-----CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999953 7899995 4458999999999999876
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-28 Score=239.99 Aligned_cols=273 Identities=13% Similarity=0.056 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHhcCC-------------CCCCCcEEEEeCCCCCChhhhh
Q 012785 143 PEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYALSSQ-------------DASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~-------------gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
.++++.+++++.. .|. ++++|++|+|+++++.+++.++..+ || +|++++|+|+.+...+
T Consensus 68 ~~~~~~l~~~la~~~~~---~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~ 140 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNN---KDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHP----KIIVPITAHFSFEKGR 140 (397)
T ss_dssp HHHHHHHHHHHHHHTTC---TTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSC----EEEEETTCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC---CCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCe----EEEECCcchhHHHHHH
Confidence 4555555554432 222 3578999999999999999999776 88 9999999999999999
Q ss_pred hhcCCeEeeeccC------cccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC--C--
Q 012785 209 DCVKSRLYKWAGD------AKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY--T-- 269 (456)
Q Consensus 209 ~~~g~~~~~~~~d------~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~--~-- 269 (456)
+..|.+++.++.| .+.++. . +++++++++|+||||.+.+ ++|+++|+++|+||+|.+... .
T Consensus 141 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~ 220 (397)
T 3f9t_A 141 EMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDD 220 (397)
T ss_dssp HHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCG
T ss_pred HHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccc
Confidence 9999999887764 344432 2 6789999999999999977 489999999999999974211 0
Q ss_pred ---------CCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc-----------CcCChHHHHHH
Q 012785 270 ---------SIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT-----------IGVSKDSQLRA 328 (456)
Q Consensus 270 ---------~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~-----------~~~s~~~q~~a 328 (456)
++. .. +.++++.|++|.++ +|.|+||++++++.+.+.+........ .+.+...+.++
T Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 298 (397)
T 3f9t_A 221 KYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAV 298 (397)
T ss_dssp GGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHH
T ss_pred ccccccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHH
Confidence 111 12 56799999999776 888999999976656554432221111 12355666666
Q ss_pred HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHH
Q 012785 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIED 408 (456)
Q Consensus 329 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~ 408 (456)
.+.+. ...+++..++++++++.+.+.|+++ ++.+..+. .++++|+.++. .+.
T Consensus 299 ~~~~~-------------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-------------~~~~~~~~~~~-~~~ 350 (397)
T 3f9t_A 299 LRYLG-------------REGQRKIVNECMENTLYLYKKLKEN-NFKPVIEP-------------ILNIVAIEDED-YKE 350 (397)
T ss_dssp HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCC-------------SSSEEEEECTT-HHH
T ss_pred HHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCC-------------CccEEEEEeCC-HHH
Confidence 66665 4566778888889999999999987 34433222 23378888764 567
Q ss_pred HHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 409 CESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 409 ~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
+.+.|.++||.+++|.. ++++||++.. +++++++++++|+++++
T Consensus 351 ~~~~l~~~gi~v~~~~~----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 351 VCKKLRDRGIYVSVCNC----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHTTCBCEECSS----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCeEEeccCC----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 78888889999999763 6899999973 89999999999998864
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-28 Score=235.85 Aligned_cols=275 Identities=9% Similarity=0.021 Sum_probs=203.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh--hhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY--PSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~ 219 (456)
..+++++++++++. .. ++++|++|+|+++++.++++++.+ | +|++++|+|+.+ ...++..|.+++.++
T Consensus 35 ~~~l~~~la~~~g~---~~-~~~~v~~t~g~t~a~~~~~~~~~~--d----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 104 (353)
T 2yrr_A 35 NRAIQERLAALFDP---GE-GALVAALAGSGSLGMEAGLANLDR--G----PVLVLVNGAFSQRVAEMAALHGLDPEVLD 104 (353)
T ss_dssp HHHHHHHHHHHHCC---CT-TCEEEEESSCHHHHHHHHHHTCSC--C----CEEEEECSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhCC---CC-CCceEEEcCCcHHHHHHHHHHhcC--C----cEEEEcCCCchHHHHHHHHHcCCceEEEe
Confidence 47888989988753 21 257899999999999999998876 6 899999998875 455677899988777
Q ss_pred cC------cccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEec
Q 012785 220 GD------AKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFT 283 (456)
Q Consensus 220 ~d------~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S 283 (456)
.| .+.++. . +++++++++|+||||.+++ ++|+++|+++|+||+|.... .+.. ...+.++++.|
T Consensus 105 ~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~-~~~~~~~~~~d~~~~s 183 (353)
T 2yrr_A 105 FPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGM-LPFSMRAMGVDYAFTG 183 (353)
T ss_dssp CCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT-SCCCHHHHTCSEEECC
T ss_pred CCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccc-ccccccccCceEEEec
Confidence 54 334432 2 6789999999999999987 48999999999999996322 2221 11245799999
Q ss_pred Ccccc-CCCCceEEEEEEeCHHHHHHHHH-------------H--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 284 VSKST-GHAGTRIGWALVKDMEVAKKMTK-------------Y--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 284 ~SK~~-g~~G~RiG~l~~~~~~~~~~l~~-------------~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
++|.+ |.+| +||++++ ++++++++. . ......+.+...+.++.++++.+. +
T Consensus 184 ~~K~~~~~~g--~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~ 250 (353)
T 2yrr_A 184 SQKCLSAPPG--LAPIAAS-LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVL----------E 250 (353)
T ss_dssp TTSTTCCCSS--CEEEEEC-HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHH----------H
T ss_pred CcccccCCCc--eEEEEEC-HHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHH----------H
Confidence 99955 5566 6999997 888776641 1 112234567777777777776321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC--CcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecC
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP--SQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSG 423 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg 423 (456)
..+++.+++++++++.+.+.|++. ++.+..+. +++ ++|++++. +.+.+.+.|.++||.+++|
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 316 (353)
T 2yrr_A 251 EGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPT-------------VLVVRPPEGVDADRLVRALYAEGVAVAGG 316 (353)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTT-------------EEEEECCTTCCHHHHHHHHHHTTEECEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCe-------------EEEEECCCCCCHHHHHHHHHHCCEEEeCC
Confidence 236788999999999999999887 45554432 222 56788752 5677888888899999999
Q ss_pred CCCCCCCCeEEEEec--CChhHHH-HHHHHHHhhh
Q 012785 424 KHFGFSPKYVRISML--DRDENYN-LFVQRLSKIL 455 (456)
Q Consensus 424 ~~fg~~~~~iRis~~--~~~e~i~-~~l~~L~~~l 455 (456)
..|.. ++++|+++. .++++++ +++++|++++
T Consensus 317 ~~~~~-~~~iRi~~~~~~~~~~~~~~~~~~l~~~l 350 (353)
T 2yrr_A 317 IGPTR-GQVLRLGLMGEGARREAYQAFLKALDRAL 350 (353)
T ss_dssp CGGGT-TTCEEEECSGGGSCHHHHHHHHHHHHHHH
T ss_pred ccccC-CCeEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 87753 689999984 3788888 9999999876
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=237.12 Aligned_cols=259 Identities=12% Similarity=0.058 Sum_probs=187.1
Q ss_pred CceEEEccCHHHHHHHHHHHhc-------CCCCCCCcEEEEeCCCCCChhhhhhhcCC-------------eEeeecc-C
Q 012785 163 NHHIVVGTGSTQLFQAALYALS-------SQDASEPISVVSAAPYYSSYPSITDCVKS-------------RLYKWAG-D 221 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~-------~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~-d 221 (456)
.++|++|+|+++++..+++++. .+++ +|++.+|+|+++...+...+. ++..++. |
T Consensus 93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 168 (395)
T 3nx3_A 93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGG----QFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYND 168 (395)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTC----EEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTC
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCC----EEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCC
Confidence 4699999999999999998875 3467 999999999988755544432 3333332 5
Q ss_pred cccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCcc
Q 012785 222 AKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSK 286 (456)
Q Consensus 222 ~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK 286 (456)
.+.++. .++++++++.++||+|...+ ++|+++|+++|+||+|.+....+.. ...+....+.||||
T Consensus 169 ~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK 248 (395)
T 3nx3_A 169 ISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAK 248 (395)
T ss_dssp HHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECG
T ss_pred HHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecc
Confidence 565554 35678888777888888743 3789999999999999865333211 11222333568999
Q ss_pred ccCCCCceEEEEEEeCHHH-HHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEV-AKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~-~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
.++ +|+|+||++++ +++ ++.+.......+++.++++|.++.++|+.+.+ ++++++.++..+..++.+.
T Consensus 249 ~~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~---------~~~~~~~~~~~~~~~~~l~ 317 (395)
T 3nx3_A 249 ALG-CGLSVGAFVIN-QKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE---------EKILENVNKLTPYLEQSLD 317 (395)
T ss_dssp GGT-TTSCCEEEEEC-HHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCCceEEEEEc-hhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHH
Confidence 999 69999999997 888 88876665556888999999999999985432 2455555555555556666
Q ss_pred HHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CCh
Q 012785 366 MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRD 441 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~ 441 (456)
+.+..++.+...++ .++|+|+.++. +...+.+.|.++||.++|+. ++++||+++ .++
T Consensus 318 ~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~iRi~~~~~~t~ 378 (395)
T 3nx3_A 318 ELINEFDFCKKRKG--------------LGFMQGLSLDKSVKVAKVIQKCQENALLLISCG-----ENDLRFLPPLILQK 378 (395)
T ss_dssp HHHHHCTTEEEEEE--------------ETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-----TTEEEECCCTTCCH
T ss_pred HHHHhCCCeEEEEe--------------EEEEEEEEeCCcchHHHHHHHHHHCCCEEecCC-----CCEEEEECCCCCCH
Confidence 65555543332222 23478888865 56778888899999999963 789999854 489
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
+++++++++|++++
T Consensus 379 e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 379 EHIDEMSEKLRKAL 392 (395)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=235.56 Aligned_cols=275 Identities=15% Similarity=0.120 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhh---cCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDC---VKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~---~g~~~ 215 (456)
.+++++++++++. ++++|++|+|+++++.++++++. ++|| +|++++|+|+.+...+.. .|+++
T Consensus 46 ~~~~~~la~~~~~------~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4hvk_A 46 QEAREKVAKLVNG------GGGTVVFTSGATEANNLAIIGYAMRNARKGK----HILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHTTC------TTEEEEEESSHHHHHHHHHHHHHHHHGGGCC----EEEEETTCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CcCeEEEECCchHHHHHHHHHhhhhhcCCCC----EEEECCCCcHHHHHHHHHHHhcCCEE
Confidence 4677777777653 45789999999999999999998 8999 999999999988876655 58898
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLM 280 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~ 280 (456)
+.++.| .+.++. .+++++++++||||||.+++ ++|+++|+ +|+|++|..... +.. ...+.+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~-~~~~~~~~~d~~ 193 (382)
T 4hvk_A 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI-EVDVEKIGADML 193 (382)
T ss_dssp EEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTB-CCCHHHHTCSEE
T ss_pred EEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC-CCCchhcCCCEE
Confidence 877754 344432 36789999999999999987 48999999 999999874321 111 12246799
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
++|+||.+|.+| +|+++++ ++. .+.... .......+...+.++.+.++. .++++++.
T Consensus 194 ~~s~~K~~g~~g--~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-----------~~~~~~~~ 257 (382)
T 4hvk_A 194 TISSNDIYGPKG--VGALWIR-KEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEI-----------TAMEWREE 257 (382)
T ss_dssp EEESGGGTSCTT--CEEEEEE-TTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred EEeHHHhcCCCc--eEEEEEc-Ccc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHH-----------HHhhHHHH
Confidence 999999888666 7787776 332 121111 111334466777777676662 24577889
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC---
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS--- 429 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~--- 429 (456)
+++++++++.+.+.|++++++.+..+.+.. .++++++.++. +.+.+.+.|.++||.+++|..|+..
T Consensus 258 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~ 327 (382)
T 4hvk_A 258 AERLRRLRDRIIDNVLKIEESYLNGHPEKR----------LPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQ 327 (382)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEECSCSSSB----------CTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------C
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCcccc----------CCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCc
Confidence 999999999999999987666665544321 12256666654 5677888899999999999877532
Q ss_pred ---------------CCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 430 ---------------PKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ---------------~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++++||++.. ++|++++++++|++++
T Consensus 328 ~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~ 370 (382)
T 4hvk_A 328 PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 5899999974 7899999999999875
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=230.99 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~~ 220 (456)
.+++++++++++. .++++|++|+|+++++..+++++.++|| +|+++.|+|.. +...++..|.+++.++.
T Consensus 59 ~~l~~~la~~~~~-----~~~~~v~~~~gg~~al~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~ 129 (393)
T 3kgw_A 59 EEIKQGIQYVFQT-----RNPLTLVVSGSGHCAMETALFNLLEPGD----SFLTGTNGIWGMRAAEIADRIGARVHQMIK 129 (393)
T ss_dssp HHHHHHHHHHHTC-----CCSEEEEESCCTTTHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC-----CCCcEEEEeCCcHHHHHHHHHhcCCCCC----EEEEEeCCchhHHHHHHHHHcCCceEEEeC
Confidence 5777888877753 1234699999999999999999999999 99999988853 36677788999887764
Q ss_pred C------cccccc---C-CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 221 D------AKRFNK---D-GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 221 d------~~~l~~---~-~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
+ .+.++. . +++++++++||||||.+++ ++|+++|+++|+||+|.......-....+.++++.|+|
T Consensus 130 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~s 209 (393)
T 3kgw_A 130 KPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQ 209 (393)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESS
T ss_pred CCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCc
Confidence 3 344432 2 7889999999999999987 48999999999999987322111112345689999999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHHh-----------------------hccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIE-----------------------LNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~~-----------------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
|.++ ++.++||++++ +++++.+..... ....+.+...+.++.+.++.+.
T Consensus 210 K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~------ 281 (393)
T 3kgw_A 210 KVLN-APPGISLISFN-DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIA------ 281 (393)
T ss_dssp STTC-CCSSCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH------
T ss_pred cccc-CCCceeEEEEC-HHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHH------
Confidence 9774 33448999996 888888865321 1124557777777777766321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhC-CEE
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGN-KIL 419 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~-gI~ 419 (456)
+..+++.+++++++++.+.+.|++++ +.+..+.+.. ..+.++|+.++. +.+.+.+.|.++ ||.
T Consensus 282 ----~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 347 (393)
T 3kgw_A 282 ----EQGLENCWRRHREATAHLHKHLQEMG-LKFFVKDPEI---------RLPTITTVTVPAGYNWRDIVSYVLDHFSIE 347 (393)
T ss_dssp ----HHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGG---------BCSSEEEEECCTTBCHHHHHHHHHHHHCEE
T ss_pred ----HhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCChhh---------cCCeEEEEeCCCCCCHHHHHHHHHHhCCEE
Confidence 33478889999999999999999873 5544333211 112256788753 456677777665 999
Q ss_pred eecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 420 TRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
+++|..+. .++++||++ + .+++++++++++|++++
T Consensus 348 v~~g~~~~-~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l 385 (393)
T 3kgw_A 348 ISGGLGPT-EERVLRIGLLGYNATTENVDRVAEALREAL 385 (393)
T ss_dssp CBCCCGGG-TTTEEEEECCGGGCCHHHHHHHHHHHHHHH
T ss_pred EeCCcccC-CCCEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 99988653 478999998 5 38999999999999876
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=241.04 Aligned_cols=267 Identities=14% Similarity=0.104 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC------C-CCCCCcEEEEeCCCCCChhh-hhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS------Q-DASEPISVVSAAPYYSSYPS-ITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~------~-gd~~~~~Vlv~~P~y~~~~~-~~~~~g~~ 214 (456)
.++++.++++++ .++|++|+|+++++.++++++.. + ++ +|++.+|+|++... .++..|.+
T Consensus 85 ~~l~~~la~~~g--------~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~----~vi~~~~~yh~~~~~~~~~~g~~ 152 (397)
T 2ord_A 85 MELAELLSKNTF--------GGKVFFANTGTEANEAAIKIARKYGKKKSEKKY----RILSAHNSFHGRTLGSLTATGQP 152 (397)
T ss_dssp HHHHHHHHHTTT--------SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCC----EEEEEBTCCCCSSHHHHHHSBCH
T ss_pred HHHHHHHHHhcC--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCc----eEEEEcCCcCCCchhhhhccCCh
Confidence 566666666552 36899999999999999998863 4 45 89999999987554 66667765
Q ss_pred ------------Eeeecc-Ccccccc---CCCeEEEEcCCCCCCcc-cch--------HHhhhcCcEEEeeecCCCCCCC
Q 012785 215 ------------LYKWAG-DAKRFNK---DGPYIELVTSPNNPDGS-VRQ--------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 215 ------------~~~~~~-d~~~l~~---~~~~~i~v~~P~NPtG~-~~~--------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
++.++. |.+.++. .++++|++++||||||. +++ ++|+++|+++|+||+|.+..+.
T Consensus 153 ~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~ 232 (397)
T 2ord_A 153 KYQKPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRT 232 (397)
T ss_dssp HHHGGGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred hhccccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccC
Confidence 555543 5555543 36799999999999999 665 2789999999999999864332
Q ss_pred C--CC-C--CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 270 S--IT-Y--PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 270 ~--~~-~--~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
+ .. . ....++ .||||.++ +|+|+||++++ ++++ .+.......+++.+++.|.++.+.|+.+.+
T Consensus 233 g~~~~~~~~~~~~d~--~s~sK~~~-~G~r~G~~~~~-~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~------- 300 (397)
T 2ord_A 233 GKLFAYQKYGVVPDV--LTTAKGLG-GGVPIGAVIVN-ERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTK------- 300 (397)
T ss_dssp SSSSHHHHHTCCCSE--EEECGGGG-TTSCCEEEEEC-STTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS-------
T ss_pred ccchhhhhhCCCCCe--eeeccccC-CCcCeEEEEEc-hHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-------
Confidence 2 11 0 111123 38899999 99999999997 5665 554333345778899999999999885322
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcC-CccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEee
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSG-LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTR 421 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~ 421 (456)
++.+++++++++.+.+.|++.+ .+.... ..++.++|+|++++. +...+.+.|.++||.++
T Consensus 301 ------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----------~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~ 363 (397)
T 2ord_A 301 ------EGFLEEVEEKGNYLMKKLQEMKEEYDVVA-----------DVRGMGLMIGIQFREEVSNREVATKCFENKLLVV 363 (397)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHCTTEE-----------EEEEETTEEEEEECTTSCHHHHHHHHHHTTEECE
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHhCCceE-----------EEEEEeEEEEEEECChHHHHHHHHHHHHCCCEEc
Confidence 2467778888888888887642 111100 001223478888864 36678888888999999
Q ss_pred cCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 422 SGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 422 pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
||. ++++||+++ .+++++++++++|++++
T Consensus 364 ~~~-----~~~iRis~~~~~~~e~i~~~~~~l~~~l 394 (397)
T 2ord_A 364 PAG-----NNTIRFLPPLTVEYGEIDLAVETLKKVL 394 (397)
T ss_dssp EET-----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cCC-----CCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 962 679999954 58999999999999876
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=231.73 Aligned_cols=279 Identities=10% Similarity=0.014 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~~ 220 (456)
.++++.++++++. . .++.|++|+|+++++++++.++.++|| +|++++|+|+. +...++..|.+++.++.
T Consensus 49 ~~~~~~la~~~~~---~--~~~~v~~~~sgt~al~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 119 (411)
T 3nnk_A 49 NEVMALYRGVFRT---E--NRWTMLVDGTSRAGIEAILVSAIRPGD----KVLVPVFGRFGHLLCEIARRCRAEVHTIEV 119 (411)
T ss_dssp HHHHHHHHHHHTC---C--CSEEEEEESCHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC---C--CCcEEEECCCcHHHHHHHHHHhcCCCC----EEEEecCCchHHHHHHHHHHcCCeEEEEec
Confidence 5677777777653 1 233488999999999999999999999 99999999987 88888999999887765
Q ss_pred C------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 221 D------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 221 d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
+ .+.++. .++++|++++||||||.+++ ++|+++|+++|+||++.......-....+.++++.|++
T Consensus 120 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~ 199 (411)
T 3nnk_A 120 PWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQ 199 (411)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCST
T ss_pred CCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCc
Confidence 4 344432 27899999999999999977 48999999999999987422211112335689999999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHH------------------------------------hhccCcCChHHHHHHH
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYI------------------------------------ELNTIGVSKDSQLRAA 329 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~------------------------------------~~~~~~~s~~~q~~a~ 329 (456)
|.++ .+.++||++++ +++++++.... .....+.+...+.++.
T Consensus 200 K~l~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 277 (411)
T 3nnk_A 200 KCLG-GPSGTSPITLS-ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAR 277 (411)
T ss_dssp TTTC-CCSSEEEEEEC-HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHH
T ss_pred cccC-CCCceEEEEEC-HHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHH
Confidence 9754 34469999996 88988887643 0122355667777776
Q ss_pred HHHHhhhCCCCCCCCcchhH-HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cH
Q 012785 330 KVLKVVSDSCKPSGSEDECF-FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EI 406 (456)
Q Consensus 330 ~~L~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~ 406 (456)
+.++.. .+. +++.+++++++++.+.+.|++.+ +.+..+.+.. .++++|+.++. +.
T Consensus 278 ~al~~~-----------~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~----------~~~~~~~~~~~~~~~ 335 (411)
T 3nnk_A 278 ECARLI-----------LQEGLDYGIARHKLHGDALVKGIQAMG-LETFGDLKHK----------MNNVLGVVIPQGING 335 (411)
T ss_dssp HHHHHH-----------HHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBCSCGGGB----------CSSEEEEECCTTCCH
T ss_pred HHHHHH-----------HHhhHHHHHHHHHHHHHHHHHHHHHcC-CEeCCCcccc----------cccEEEEECCCCCCH
Confidence 777632 233 77889999999999999999874 4444433211 23378888853 45
Q ss_pred HHHHHHHHh-CCEEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhh
Q 012785 407 EDCESFLKG-NKILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 407 ~~~~~~l~~-~gI~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l 455 (456)
+.+.+.|.+ +||.+++|.... .++++||++ . .+++++++++++|++++
T Consensus 336 ~~l~~~l~~~~gi~v~~g~~~~-~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l 387 (411)
T 3nnk_A 336 DQARKLMLEDFGIEIGTSFGPL-HGKVWRIGTMGYNARKDCVMTTLSALEAVL 387 (411)
T ss_dssp HHHHHHHHHHHSEEEEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCeEEeCccCCC-CCCEEEEeCccCcCCHHHHHHHHHHHHHHH
Confidence 667666655 599999984332 467999998 4 27899999999999875
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=229.90 Aligned_cols=284 Identities=15% Similarity=0.145 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
..+|+++++++++. ++.|++++| ++++.++++++..+|| +|+++.|+|+..... ++..|.++..
T Consensus 54 ~~~l~~~la~~~~~-------~~~i~~~sG-t~a~~~~~~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (386)
T 1cs1_A 54 RDVVQRALAELEGG-------AGAVLTNTG-MSAIHLVTTVFLKPGD----LLVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSH-HHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHhCC-------CcEEEeCCH-HHHHHHHHHHHhCCCC----EEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence 47999999999964 367888777 8999999999999999 999999999974443 4667888887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .+++++++++|+||||.+++ ++|+++|+++|+||+|....+.. +...+.+++++|+||.+
T Consensus 122 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~di~~~s~sK~~ 200 (386)
T 1cs1_A 122 VDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN-PLALGADLVLHSCTKYL 200 (386)
T ss_dssp ECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-GGGGTCSEEEEETTTTT
T ss_pred eCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-ccccCceEEEEcCcccc
Confidence 775 5555543 36789999999999999987 48999999999999998654321 12346789999999999
Q ss_pred CCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+.+|.|+ ||++++++++++.+.......+.+.+++.+.++...++ .+....+.+.++++.+.+.
T Consensus 201 ~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~l~~~ 265 (386)
T 1cs1_A 201 NGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---------------TLVPRMELAQRNAQAIVKY 265 (386)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc---------------HHHHHHHHHHHHHHHHHHH
Confidence 9899997 99999755898988887765566688888887766554 2344556677788888888
Q ss_pred HHhcCCccccCCCC-----cccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCC----------------
Q 012785 368 VQKSGLFSVPELPS-----QFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHF---------------- 426 (456)
Q Consensus 368 L~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~f---------------- 426 (456)
|++++.+.....++ ++ ..........++++.+.+++..+.+.+.|.++||.+++.+ |
T Consensus 266 l~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~ 343 (386)
T 1cs1_A 266 LQTQPLVKKLYHPSLPENQGH-EIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAES-LGGVESLISHAATMTHA 343 (386)
T ss_dssp HTTCTTEEEEECTTSTTSTTH-HHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTT
T ss_pred HhcCCCeEEEECCCCCCCccH-HHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEccc-CCCcceeeecccccccc
Confidence 87764322110000 00 0000000123556777776556678888999999987421 1
Q ss_pred ----------CCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 427 ----------GFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 ----------g~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|..++++||++.. ++++++.+.+.|+++.
T Consensus 344 ~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 344 GMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp TSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 2236899999975 4556666666666543
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-26 Score=223.11 Aligned_cols=264 Identities=13% Similarity=0.116 Sum_probs=198.5
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC-hhhhhhhcCCeEeeecc------Cccccc-cCCCeEEE
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS-YPSITDCVKSRLYKWAG------DAKRFN-KDGPYIEL 234 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~-~~~~~~~~g~~~~~~~~------d~~~l~-~~~~~~i~ 234 (456)
+++|++|+|++++++++++++..+ + .+++..|.|.. +...++..|++++.++. |.+.++ ..++++++
T Consensus 61 ~~~v~~~~g~t~al~~~~~~l~~~-~----~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~v~ 135 (362)
T 3ffr_A 61 NYEVLFLASATEIWERIIQNCVEK-K----SFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADITVPADAEIIC 135 (362)
T ss_dssp TEEEEEESCHHHHHHHHHHHHCSS-E----EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCCCCTTCCEEE
T ss_pred CcEEEEeCCchHHHHHHHHhccCC-c----EEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHhccCCccEEE
Confidence 578999999999999999999877 5 77788888873 34466778988876654 445554 23679999
Q ss_pred EcCCCCCCcccch-----HHhhhc-CcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccC-CCCceEEEEEEeCHHHHH
Q 012785 235 VTSPNNPDGSVRQ-----SVVNRS-GGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 235 v~~P~NPtG~~~~-----~l~~~~-~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~ 307 (456)
+++||||||.+++ ++|+++ |+++|+|++|..... +. ...+.+++++|+||.++ ++| +|+++++ +++++
T Consensus 136 ~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-~~-~~~~~d~~~~s~~K~~~~~~G--~g~~~~~-~~~~~ 210 (362)
T 3ffr_A 136 LTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-KF-DWTKIDSVFFSVQKCFGLPAG--LGVWILN-DRVIE 210 (362)
T ss_dssp EESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-CC-CTTSCSEEEEETTSTTCCCSC--CEEEEEE-HHHHH
T ss_pred EEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCc-cc-ChhHCcEEEEecccccCCCCc--eEEEEEC-HHHHH
Confidence 9999999999987 378999 999999999885322 11 11226799999999998 788 5778886 88888
Q ss_pred HHHHHHh---------------------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 308 KMTKYIE---------------------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 308 ~l~~~~~---------------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++..... ....+.+...+.++..+++.+.+ ..+++.+++++++++.+.+
T Consensus 211 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~l~~ 280 (362)
T 3ffr_A 211 KSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQ----------ISADGIRKQTEEKAALINT 280 (362)
T ss_dssp HHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH----------HCHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHH----------ccHHHHHHHHHHHHHHHHH
Confidence 8877643 11455677777777777763221 2267888999999999999
Q ss_pred HHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHH
Q 012785 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENY 444 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i 444 (456)
.|++++++.+..+.+.. ..+.++|+.++++.+.+.+.|.++||.+++|..+. .++++||++.. ++|++
T Consensus 281 ~L~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~-~~~~iRis~~~~~~~e~i 350 (362)
T 3ffr_A 281 YIESSKVFSFGVEDAKL---------RSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSK-KETQIRIANFPAHSLEQV 350 (362)
T ss_dssp HHHHCSSEEESSSCGGG---------BCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGG-TTTEEEEECCTTSCHHHH
T ss_pred HHHHccCceeccCChhh---------cCCceEEEecCCCHHHHHHHHHHCCeEEecCcccc-CCCEEEEECCCCCCHHHH
Confidence 99998666665433221 11236788886566778888888899999986543 47899999864 88999
Q ss_pred HHHHHHHHhhhC
Q 012785 445 NLFVQRLSKILS 456 (456)
Q Consensus 445 ~~~l~~L~~~l~ 456 (456)
++++++|++++.
T Consensus 351 ~~l~~~l~~~~~ 362 (362)
T 3ffr_A 351 HKLVQTLKEKIG 362 (362)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=229.46 Aligned_cols=278 Identities=12% Similarity=0.038 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEE-EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIV-VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~-~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~ 219 (456)
.+++++++++++. ++++++ +++|+++++.+++.++.++|| +|++++|+|+. +...++..|.+++.++
T Consensus 47 ~~l~~~la~~~g~------~~~~~~~~~~s~t~al~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 116 (416)
T 3isl_A 47 NETMEMLRELFQT------KNRWAYPIDGTSRAGIEAVLASVIEPED----DVLIPIYGRFGYLLTEIAERYGANVHMLE 116 (416)
T ss_dssp HHHHHHHHHHTTC------CCSEEEEEESCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCC------CCCcEEEecCcHHHHHHHHHHHhcCCCC----EEEEecCCcccHHHHHHHHhcCCeeEEEe
Confidence 5677777777653 344555 889999999999999999999 99999999987 7778888999998777
Q ss_pred cC------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecC
Q 012785 220 GD------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTV 284 (456)
Q Consensus 220 ~d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~ 284 (456)
.| .+.++. .++++|++++||||||.+++ ++|+++|+++|+|++|.......-....+.+++++|+
T Consensus 117 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~ 196 (416)
T 3isl_A 117 CEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGT 196 (416)
T ss_dssp CCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCS
T ss_pred cCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecC
Confidence 64 344432 36789999999999999877 4899999999999998743221111234568999999
Q ss_pred ccccCCCCceEEEEEEeCHHHHHHHHHHH--------------------------------------hhccCcCChHHHH
Q 012785 285 SKSTGHAGTRIGWALVKDMEVAKKMTKYI--------------------------------------ELNTIGVSKDSQL 326 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~~~~l~~~~--------------------------------------~~~~~~~s~~~q~ 326 (456)
+|.++ .+.++||++++ +++++++...+ .....+.+...+.
T Consensus 197 ~K~l~-g~~g~g~~~~~-~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (416)
T 3isl_A 197 QKCLS-VPSGMAPITYN-ERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY 274 (416)
T ss_dssp SSTTC-CCSSEEEEEEC-HHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred ccccC-CCCCeEEEEEC-HHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence 99753 34458999996 88888876421 1113355677777
Q ss_pred HHHHHHHhhhCCCCCCCCcchhH-HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-
Q 012785 327 RAAKVLKVVSDSCKPSGSEDECF-FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ- 404 (456)
Q Consensus 327 ~a~~~L~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~- 404 (456)
++.+.++.. .++ +++.+++++++++.+.+.|++. ++.+..+.+.. .+.++++.++.
T Consensus 275 a~~~al~~~-----------~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~----------~~~~~~~~~~~~ 332 (416)
T 3isl_A 275 ALREGVRLV-----------LEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCK----------MPVVTCVEIPGG 332 (416)
T ss_dssp HHHHHHHHH-----------HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGB----------CTTEEEEECCTT
T ss_pred HHHHHHHHH-----------HHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCcccc----------CCcEEEEeCCCC
Confidence 777777632 334 7889999999999999999986 45555443311 12367888852
Q ss_pred -cHHHHHHHHHhC-CEEeecCCCCCCCCCeEEEEecC--ChhH-HHHHHHHHHhhh
Q 012785 405 -EIEDCESFLKGN-KILTRSGKHFGFSPKYVRISMLD--RDEN-YNLFVQRLSKIL 455 (456)
Q Consensus 405 -~~~~~~~~l~~~-gI~v~pg~~fg~~~~~iRis~~~--~~e~-i~~~l~~L~~~l 455 (456)
+.+.+.+.|.++ ||.+++|... ..++++||++.. ++++ +++++++|++++
T Consensus 333 ~~~~~l~~~L~~~~gi~v~~g~~~-~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 333 IDGESVRDMLLAQFGIEIASSFGP-LAGKIWRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp CCHHHHHHHHHHHHCEECBCCCST-TTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEecCCCC-CCCCEEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 566677777655 9999998743 247899999832 5555 999999999875
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=239.90 Aligned_cols=272 Identities=12% Similarity=0.013 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhc---------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCV--------- 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~--------- 211 (456)
.+|++.++++++. ..++|++|+|++++++.+++++. ..++ +|++.+|+|+++...+...
T Consensus 88 ~~l~~~la~~~~~------~~~~v~~~~gg~ea~~~a~~~~~~~~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 157 (433)
T 1zod_A 88 VDLATRLANITPP------GLDRALLLSTGAESNEAAIRMAKLVTGKY----EIVGFAQSWHGMTGAAASATYSAGRKGV 157 (433)
T ss_dssp HHHHHHHHHHSCT------TCCEEEEESCHHHHHHHHHHHHHHHHTCC----EEEEETTCCCCSSHHHHHTCCSSCCSSS
T ss_pred HHHHHHHHHhCCC------CcCEEEEeCchHHHHHHHHHHHHHhhCCC----eEEEECCCcCCCChhHHhhcCCcccccc
Confidence 4555555554421 24799999999999999998654 3356 8999999999876543322
Q ss_pred -----CCeEeeecc----------------Ccccccc-------CCCeEEEEcCC-CCCCccc-ch--------HHhhhc
Q 012785 212 -----KSRLYKWAG----------------DAKRFNK-------DGPYIELVTSP-NNPDGSV-RQ--------SVVNRS 253 (456)
Q Consensus 212 -----g~~~~~~~~----------------d~~~l~~-------~~~~~i~v~~P-~NPtG~~-~~--------~l~~~~ 253 (456)
|.+.+.++. |.+.++. .++++++ ++| |||||.. .+ ++|+++
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~ 236 (433)
T 1zod_A 158 GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEAR 236 (433)
T ss_dssp CCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred CCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHh
Confidence 344443321 2444432 2344554 466 5889964 33 378999
Q ss_pred CcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHH
Q 012785 254 GGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRA 328 (456)
Q Consensus 254 ~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a 328 (456)
|+++|+||+|.+..+.+.. ...+....+.||||.++ +|+|+||++++ +++++.+...... .+++.++++|.++
T Consensus 237 ~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~-~G~~ig~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~ 314 (433)
T 1zod_A 237 GMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLG-AGLPLAAIVTS-AAIEERAHELGYLFYTTHVSDPLPAAVG 314 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHH-TTSSCEEEEEC-HHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred CCEEEEeccccCCCcCchHhHHhhcCCCCCEEEeccccc-CCCCeeEEEEh-HHHHHhhccCCCCCCCCCCcCHHHHHHH
Confidence 9999999999965433211 10111222459999999 59999999997 8999888774322 5788899999999
Q ss_pred HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc
Q 012785 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ 404 (456)
Q Consensus 329 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~ 404 (456)
.++|+.+.+. ...++++++++.+.+.|+++ +.+...++ .++|+|++++.
T Consensus 315 ~aal~~~~~~-------------~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~--------------~g~~~~i~~~~ 367 (433)
T 1zod_A 315 LRVLDVVQRD-------------GLVARANVMGDRLRRGLLDLMERFDCIGDVRG--------------RGLLLGVEIVK 367 (433)
T ss_dssp HHHHHHHHHT-------------THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE--------------ETTEEEEEEEE
T ss_pred HHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE--------------EEEEEEEEEec
Confidence 9988754332 23455566666666666553 32222222 23478887742
Q ss_pred ----------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 405 ----------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ----------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
....+.+.|.++||.+.||..|+ .++++||+++ .+++++++++++|++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-~~~~lRi~~~~~~t~~~i~~~l~~l~~~l 429 (433)
T 1zod_A 368 DRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-MGGVFRIAPPLTVSEDEIDLGLSLLGQAI 429 (433)
T ss_dssp ETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-SCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CccccCCChHHHHHHHHHHHHCCCeEeccCCCC-CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 24567777889999999998876 4689999754 48999999999998875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=227.25 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---CCCCCCCcEEEEe-CCCCCChh-hhhhhcCCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---SQDASEPISVVSA-APYYSSYP-SITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~~gd~~~~~Vlv~-~P~y~~~~-~~~~~~g~~~~~ 217 (456)
.+++++++++++.. ... ++++|++|+|++++++++++++. ++|| +|++. .|+|+.+. ..++..|.+++.
T Consensus 41 ~~~~~~l~~~~~~~-~~~-~~~~v~~~~g~t~al~~~~~~~~~~~~~gd----~vlv~~~~~~~~~~~~~~~~~g~~~~~ 114 (385)
T 2bkw_A 41 QRVLKNTRAVFKSA-AAS-KSQPFVLAGSGTLGWDIFASNFILSKAPNK----NVLVVSTGTFSDRFADCLRSYGAQVDV 114 (385)
T ss_dssp HHHHHHHHHHTTCC-GGG-TCEEEEEESCTTHHHHHHHHHHSCTTCSCC----EEEEECSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCC-CCC-CCceEEEcCchHHHHHHHHHHHhccCCCCC----eEEEEcCCcchHHHHHHHHHcCCceEE
Confidence 57788888887541 112 35799999999999999999997 8899 98777 66777764 677788999887
Q ss_pred ecc-C------cccccc----CCCeEEEEcCCCCCCcccch-----HHhhhc--CcEEEeeecCCCCCCCCCC-CCCCCc
Q 012785 218 WAG-D------AKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRS--GGILVHDLAYYWPQYTSIT-YPADHD 278 (456)
Q Consensus 218 ~~~-d------~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~--~~~iI~De~y~~~~~~~~~-~~~~~~ 278 (456)
++. | .+.++. .++++|++++|+||||.+++ ++|+++ |+++|+|++|..... ++. ...+.+
T Consensus 115 v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~d 193 (385)
T 2bkw_A 115 VRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-EFEFDEWGVD 193 (385)
T ss_dssp ECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-CCCTTTTTCS
T ss_pred EecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-cccccccCce
Confidence 776 3 333332 26789999999999999977 488999 999999999984322 221 223568
Q ss_pred EEEecCcccc-CCCCceEEEEEEeCHHHHH-HHH------------------HHH-hhc------cCcCChHHHHHHHHH
Q 012785 279 LMLFTVSKST-GHAGTRIGWALVKDMEVAK-KMT------------------KYI-ELN------TIGVSKDSQLRAAKV 331 (456)
Q Consensus 279 i~i~S~SK~~-g~~G~RiG~l~~~~~~~~~-~l~------------------~~~-~~~------~~~~s~~~q~~a~~~ 331 (456)
++++|+||.+ |.+| +||++++ +++++ +++ ... ... ....+...+.++.++
T Consensus 194 ~~~~s~~K~~~~~~G--~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 270 (385)
T 2bkw_A 194 FALTASQKAIGAPAG--LSISLCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVA 270 (385)
T ss_dssp EEEEESSSTTCCCSC--EEEEEEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHH
T ss_pred EEEecCccccccCCc--ceEEEEc-HHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHH
Confidence 9999999966 4677 4999997 77766 442 110 111 134667777777777
Q ss_pred HHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH-HhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHH
Q 012785 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAV-QKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCE 410 (456)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 410 (456)
++.+. +..+++.+++++++++.+.+.| +++ ++.+..+.+.. ...++++|+.+++ .+.+.
T Consensus 271 l~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~ 330 (385)
T 2bkw_A 271 LKEIL----------EEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSN--------MSAHGLTAVYVAD-PPDVI 330 (385)
T ss_dssp HHHHH----------HHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSST--------TBCSSCEEEECSC-HHHHH
T ss_pred HHHHH----------HccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCccc--------ccCCceEEEecCC-HHHHH
Confidence 76321 1226778888999999999999 876 35544322110 0123478998875 66677
Q ss_pred HHHHhCCEEeecCCCCCCCCCeEEEE-ec-----CChhHHHHHHHHHHhhhC
Q 012785 411 SFLKGNKILTRSGKHFGFSPKYVRIS-ML-----DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 411 ~~l~~~gI~v~pg~~fg~~~~~iRis-~~-----~~~e~i~~~l~~L~~~l~ 456 (456)
+.|.++||.+++|..+...++++||+ ++ .+++++++++++|+++++
T Consensus 331 ~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 331 AFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp HHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 78889999999998765557899999 76 388999999999998764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=236.02 Aligned_cols=278 Identities=10% Similarity=0.006 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCC-
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKS- 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~- 213 (456)
.++++++++++... .+. ..++|++|+|++++++.+++++.. +++ +|++.+|+|+++...+...+.
T Consensus 94 ~~~~~~la~~l~~~-~~~-~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~~~ 167 (460)
T 3gju_A 94 TEASITLAKMIIDR-APK-GMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKK----KIISRWRGYHGSGVMTGSLTGL 167 (460)
T ss_dssp CHHHHHHHHHHHHH-SCT-TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHHCCC
T ss_pred CHHHHHHHHHHHhh-CCC-CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCC----EEEEECCCcCCCCHHHhhccCC
Confidence 45666666666432 111 346999999999999999998874 456 999999999998876655432
Q ss_pred --------------eEeeecc----C-------------cccccc-------CCCeEEEEcCCCCCCcccch--------
Q 012785 214 --------------RLYKWAG----D-------------AKRFNK-------DGPYIELVTSPNNPDGSVRQ-------- 247 (456)
Q Consensus 214 --------------~~~~~~~----d-------------~~~l~~-------~~~~~i~v~~P~NPtG~~~~-------- 247 (456)
..++.+. + .+.++. .++++|+++.++|++|....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l 247 (460)
T 3gju_A 168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI 247 (460)
T ss_dssp GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence 2222221 1 233322 24566777666777777433
Q ss_pred -HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-------Hhh
Q 012785 248 -SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-------IEL 315 (456)
Q Consensus 248 -~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-------~~~ 315 (456)
++|+++|+++|+||+|.+..+.+-. ...+...-+.+|||+++ .| +|+||++++ +++++.+... ...
T Consensus 248 ~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~-gG~~~lg~v~~~-~~i~~~~~~~~~~~~~~~~~ 325 (460)
T 3gju_A 248 QAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLT-SAYAPLSGVIVA-DRVWQVLVQGSDKLGSLGHG 325 (460)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGT-TTSSCCEEEEEE-HHHHHHHHHHHHHHCSCSCC
T ss_pred HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhc-CCCCCeEEEEEC-HHHHHHHhcccccccccccC
Confidence 3899999999999999975443311 11111222457999998 67 899999997 9999988643 344
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCC
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQP 395 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~ 395 (456)
.+++.++++|.++.++|+.+.+ ++++++.++..+..++.+.+.+++++.+...++.|.
T Consensus 326 ~t~~~~~~~~aaa~aal~~~~~---------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~------------- 383 (460)
T 3gju_A 326 WTYSAHPICVAAGVANLELIDE---------MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGM------------- 383 (460)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETT-------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeE-------------
Confidence 6889999999999999986533 346677777777777777777777665444444443
Q ss_pred ceEEeecCcc-------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 396 AFAWLKCEQE-------------IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 396 ~f~~~~~~~~-------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
|+++.+..+ ...+.+.+.++||.++|+. .++++||+ +..++|++++++++|++++
T Consensus 384 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 453 (460)
T 3gju_A 384 -LAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP----QGDILGFAPPLCLTREQADIVVSKTADAV 453 (460)
T ss_dssp -EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS----SSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -EEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 567766421 4467788889999999965 36899999 4459999999999999876
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-26 Score=227.94 Aligned_cols=315 Identities=13% Similarity=0.094 Sum_probs=213.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCC---CcccCCCHH--HHH-----HHHHHHHHhcCccCCC
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVR---NLCWFLEPE--FAK-----EVVRLHKVVGNAITEN 163 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---G~~~~~~~~--lr~-----aia~~~~~~g~~~~~~ 163 (456)
...|||..|.+.+ ++.+.++.. ..+.... ...|+... | .+. +++ .++++++. ++
T Consensus 23 ~~~i~~~~~~~~~--~~~v~~a~~-~~~~~~~--~~~y~~~~~~~g-----~~~~~~~e~~ar~~la~~~g~------~~ 86 (407)
T 2dkj_A 23 REGLELIASENFV--SKQVREAVG-SVLTNKY--AEGYPGARYYGG-----CEVIDRVESLAIERAKALFGA------AW 86 (407)
T ss_dssp HTSEECCTTCCCC--CHHHHHHHT-SGGGGCC--CCEETTEESSSC-----CHHHHHHHHHHHHHHHHHHTC------SE
T ss_pred hcceeeccCCCCC--CHHHHHHHH-hhhhcCc--ccCCCcccccCC-----chHHHHHHHHHHHHHHHHhCC------Cc
Confidence 4679999998877 333443322 1121111 12354332 3 232 344 44444432 23
Q ss_pred ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCCh---hhhhhhcCC--eEeeec-------cCcccccc----
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSY---PSITDCVKS--RLYKWA-------GDAKRFNK---- 227 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~---~~~~~~~g~--~~~~~~-------~d~~~l~~---- 227 (456)
++|++++|+ +++.++++++..+|| +|++++|+|+.+ ...++..|. +.+.++ +|.+.++.
T Consensus 87 ~~i~~~sGt-~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 161 (407)
T 2dkj_A 87 ANVQPHSGS-QANMAVYMALMEPGD----TLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE 161 (407)
T ss_dssp EECCCSSHH-HHHHHHHHHHCCTTC----EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH
T ss_pred ceEEecchH-HHHHHHHHHhcCCCC----EEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh
Confidence 457777776 599999999999999 999999999998 355556665 444443 33444432
Q ss_pred CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCC-CCCCCC--CCCCCCcEEEecCccccCCCCceEEEEEEe
Q 012785 228 DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW-PQYTSI--TYPADHDLMLFTVSKSTGHAGTRIGWALVK 301 (456)
Q Consensus 228 ~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~-~~~~~~--~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~ 301 (456)
.+++++++++|+||+-..+. ++|+++|+++|+||+|.. ..+.+. ......+++++|+||. ++|.|+||++++
T Consensus 162 ~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~--l~g~~~G~~~~~ 239 (407)
T 2dkj_A 162 HRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKT--LRGPRGGLILSN 239 (407)
T ss_dssp HCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGG--GCCCSCEEEEES
T ss_pred cCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEecccc--CCCCCceEEEEC
Confidence 26788989999999433333 378999999999999985 111111 0112368999999995 468899999996
Q ss_pred CHHHHHHHHHHHhhccCcCChHHHH-HHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC-
Q 012785 302 DMEVAKKMTKYIELNTIGVSKDSQL-RAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL- 379 (456)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~s~~~q~-~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~- 379 (456)
++++++.+.........+.+...+. ++.++++... ++++++.+++++++++.+.+.|++.+ +.+..+
T Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~ 308 (407)
T 2dkj_A 240 DPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL----------QPEFKEYSRLVVENAKRLAEELARRG-YRIVTGG 308 (407)
T ss_dssp CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH----------SHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGS
T ss_pred CHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHhCC-ceeecCC
Confidence 5789998887764333444334444 5556665321 35678889999999999999999873 444432
Q ss_pred CCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCC----C-CCCCeEEEEec------CChhHHH
Q 012785 380 PSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHF----G-FSPKYVRISML------DRDENYN 445 (456)
Q Consensus 380 ~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~f----g-~~~~~iRis~~------~~~e~i~ 445 (456)
.++ +|+|+.++. +.+.+.+.|.++||.+++|..| + ..++++|++++ .++++++
T Consensus 309 ~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~ 375 (407)
T 2dkj_A 309 TDN-------------HLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMP 375 (407)
T ss_dssp CSS-------------SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHH
T ss_pred CCc-------------eEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHH
Confidence 233 378998863 5677888889999999999764 2 23678999985 5899999
Q ss_pred HHHHHHHhhh
Q 012785 446 LFVQRLSKIL 455 (456)
Q Consensus 446 ~~l~~L~~~l 455 (456)
+++++|++++
T Consensus 376 ~~~~~l~~~~ 385 (407)
T 2dkj_A 376 LVAELIDRAL 385 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=237.92 Aligned_cols=262 Identities=13% Similarity=0.041 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhc-C--------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCV-K-------- 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~-g-------- 212 (456)
.+|++.++++++ ... +++|++|+|++++++.+++++.. +++ +|++.+|+|+++...+... |
T Consensus 89 ~~l~~~la~~~~---~~~--~~~v~~~~gg~ea~~~ai~~~~~~~~~----~vi~~~p~yh~~~~~~~~~~~~~~~~~~~ 159 (419)
T 2eo5_A 89 LELAKKLVTYSP---GNF--QKKVFFSNSGTEAIEASIKVVKNTGRK----YIIAFLGGFHGRTFGSISLTASKAVQRSI 159 (419)
T ss_dssp HHHHHHHHHHSS---CSS--CEEEEEESSHHHHHHHHHHHHHTTSCC----EEEEETTCCCCSSHHHHHHCCSCGGGGCS
T ss_pred HHHHHHHHHhCC---CCc--CCEEEEeCchHHHHHHHHHHHHHhhCC----cEEEECCCcCCCCHhhHhhcCCccccccc
Confidence 455555555543 221 47999999999999999987654 377 9999999999765543321 1
Q ss_pred -----CeEeeecc----------------------Cccccc-c--------CCCeEEEEcCCC-CCCccc-ch-------
Q 012785 213 -----SRLYKWAG----------------------DAKRFN-K--------DGPYIELVTSPN-NPDGSV-RQ------- 247 (456)
Q Consensus 213 -----~~~~~~~~----------------------d~~~l~-~--------~~~~~i~v~~P~-NPtG~~-~~------- 247 (456)
.+++.++. |.+.++ . .++++ ++++|+ ||||.. .+
T Consensus 160 ~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l 238 (419)
T 2eo5_A 160 VGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAG-IFFEPIQGEGGYVIPPKNFFAEL 238 (419)
T ss_dssp SCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEE-EEECSSBTTTTSBCCCTTHHHHH
T ss_pred cCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEE-EEEeCccCCCCCccCCHHHHHHH
Confidence 12333222 233454 3 13344 455775 678964 33
Q ss_pred -HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCCh
Q 012785 248 -SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSK 322 (456)
Q Consensus 248 -~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~ 322 (456)
++|+++|+++|+||+|.+..+.+.. ...+...-+.||||.++ +| +|+||++++ ++++ .+ ......+++.++
T Consensus 239 ~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~-~G~~riG~~~~~-~~~~-~~-~~~~~~t~~~n~ 314 (419)
T 2eo5_A 239 QKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALG-GGIMPIGATIFR-KDLD-FK-PGMHSNTFGGNA 314 (419)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TTTSCCEEEEEE-GGGC-CC-------CCCCCH
T ss_pred HHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEeccccc-CCccceEEEEEc-hHhh-cC-CcccCCCCCCCH
Confidence 3789999999999999864333211 11111111348999999 69 999999997 7777 66 433446888999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec
Q 012785 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC 402 (456)
Q Consensus 323 ~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~ 402 (456)
++|.++.++|+. +++.+++++++++.+.+.|+++ +...++ .++|+|+++
T Consensus 315 ~~~~aa~aal~~---------------~~~~~~~~~~~~~~l~~~L~~~--~~~~~~--------------~g~~~~i~~ 363 (419)
T 2eo5_A 315 LACAIGSKVIDI---------------VKDLLPHVNEIGKIFAEELQGL--ADDVRG--------------IGLAWGLEY 363 (419)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHTTS--SSEEEE--------------ETTEEEEEC
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHh--hhheEe--------------eeEEEEEEE
Confidence 999999999872 1227788999999999999775 222222 334788888
Q ss_pred C-c--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 403 E-Q--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 403 ~-~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
. . ... +.+.|.++||.++|+. ++++||+++ .+++++++++++|++++
T Consensus 364 ~~~~~~~~-~~~~l~~~Gv~v~~~~-----~~~lRis~~~~~t~e~i~~~l~~l~~~l 415 (419)
T 2eo5_A 364 NEKKVRDR-IIGESFKRGLLLLPAG-----RSAIRVIPPLVISEEEAKQGLDILKKVI 415 (419)
T ss_dssp SCHHHHHH-HHHHHHHTTEECEEET-----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCccHHH-HHHHHHHCCCEEecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3 2 244 7777789999999963 679999764 48999999999999875
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=233.95 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---C----CCCCCCcEEEEeCCCCCChhhhhhhc----
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---S----QDASEPISVVSAAPYYSSYPSITDCV---- 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~----~gd~~~~~Vlv~~P~y~~~~~~~~~~---- 211 (456)
.+++++++++++. .+++|++|+|++++++++++++. . +++ +|++.+|+|+++...+...
T Consensus 89 ~~l~~~la~~~~~------~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~----~vi~~~~~yh~~~~~~~~~~~~~ 158 (429)
T 1s0a_A 89 IELCRKLVAMTPQ------PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQ----RFLTFRNGYHGDTFGAMSVCDPD 158 (429)
T ss_dssp HHHHHHHHHHSCT------TCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCC----EEEEETTCCCCSSHHHHTTSCTT
T ss_pred HHHHHHHHHhCCC------CCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCC----eEEEECCCCCCCchhhhhhcCCc
Confidence 5677777777642 35799999999999999998754 2 577 9999999999875533221
Q ss_pred ------------CCeEeeec----------cCcccccc------CCCeEEEEcCC--CCCCcccch---------HHhhh
Q 012785 212 ------------KSRLYKWA----------GDAKRFNK------DGPYIELVTSP--NNPDGSVRQ---------SVVNR 252 (456)
Q Consensus 212 ------------g~~~~~~~----------~d~~~l~~------~~~~~i~v~~P--~NPtG~~~~---------~l~~~ 252 (456)
+...++++ .|.+.++. .++++++ ++| |||||..++ ++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi-~~p~~~n~tG~~~~~~~~l~~i~~l~~~ 237 (429)
T 1s0a_A 159 NSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVI-IEPIVQGAGGMRMYHPEWLKRIRKICDR 237 (429)
T ss_dssp TTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEE-ECSSEECTTTCEEBCTHHHHHHHHHHHH
T ss_pred hhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEE-EeecccCCCCcccCCHHHHHHHHHHHHH
Confidence 34444443 34444432 2344554 566 699996543 27899
Q ss_pred cCcEEEeeecCCCCCCCCC--C-CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHH-----hhccCcCChH
Q 012785 253 SGGILVHDLAYYWPQYTSI--T-YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYI-----ELNTIGVSKD 323 (456)
Q Consensus 253 ~~~~iI~De~y~~~~~~~~--~-~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~-----~~~~~~~s~~ 323 (456)
+|+++|+||+|.+..+.+. . ...+...-+.||||.++ +| +|+||++++ +++++.+.... ...+++++++
T Consensus 238 ~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~-~G~~~iG~~~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~ 315 (429)
T 1s0a_A 238 EGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALT-GGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPL 315 (429)
T ss_dssp HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TSSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTTTCHH
T ss_pred cCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEeccccc-CCCccceEEEeC-HHHHHHhhcCCCcccccCCCCCCCHH
Confidence 9999999999986433221 1 11111112448999998 79 999999996 88888886531 2347788999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEe
Q 012785 324 SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWL 400 (456)
Q Consensus 324 ~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~ 400 (456)
+|.++.++|+.+.+. ...++++++++.+.+.|+++. .+... ++.++|+|+
T Consensus 316 ~~~a~~aal~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--------------~~~g~~~~~ 368 (429)
T 1s0a_A 316 ACAAANASLAILESG-------------DWQQQVADIEVQLREQLAPARDAEMVADV--------------RVLGAIGVV 368 (429)
T ss_dssp HHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHHGGGGGCTTEEEE--------------EEETTEEEE
T ss_pred HHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHhcCCCEEEE--------------EEeeEEEEE
Confidence 999999998854332 345667778888888887752 22111 123447899
Q ss_pred ecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 401 KCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 401 ~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+++. +...+.+.|.++||.++|+ .+++||+++ .+++++++++++|+++++
T Consensus 369 ~~~~~~~~~~l~~~l~~~Gi~v~~~------~~~iRis~~~~~t~e~i~~~~~~l~~~~~ 422 (429)
T 1s0a_A 369 ETTHPVNMAALQKFFVEQGVWIRPF------GKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422 (429)
T ss_dssp EESSCBCHHHHHHHHHHTTEECCCB------TTEEEECCCTTCCHHHHHHHHHHHHHHTS
T ss_pred EECCcccHHHHHHHHHHCCCEEecc------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 8864 4666777788999999983 378999954 599999999999998763
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=239.81 Aligned_cols=261 Identities=13% Similarity=0.120 Sum_probs=181.4
Q ss_pred EEEccCHHHHHHHHHHHhc-----C---CCCCCCcEEEEeCCCCCChhhhhhhcCCeE-------------eeecc----
Q 012785 166 IVVGTGSTQLFQAALYALS-----S---QDASEPISVVSAAPYYSSYPSITDCVKSRL-------------YKWAG---- 220 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~-----~---~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~-------------~~~~~---- 220 (456)
|++|+|++++++.+++++. . +++ +|++.+|+|+++...+...+... ..++.
T Consensus 110 v~~~~ggseA~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (452)
T 3n5m_A 110 IFFSNSGSEANETAFKIARQYYAQKGEPHRY----KFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCY 185 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTTCTTCC----EEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTT
T ss_pred EEEeCchHHHHHHHHHHHHHHHHhcCCCCCC----EEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccc
Confidence 9999999999999999987 4 667 99999999999886666554321 11110
Q ss_pred -----C---------cccccc-------CCCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCC
Q 012785 221 -----D---------AKRFNK-------DGPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 221 -----d---------~~~l~~-------~~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
| .+.++. .++++++++.+ || ||.+++ ++|+++|+++|+||+|.+..+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~ 264 (452)
T 3n5m_A 186 RMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT 264 (452)
T ss_dssp TSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc
Confidence 1 333321 34567777777 89 997763 3899999999999999975443
Q ss_pred CCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH------HHhhccCcCChHHHHHHHHHHHhhhCCC
Q 012785 270 SIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK------YIELNTIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 270 ~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~------~~~~~~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
+.. ...+...-+.||||.++ .| +|+||++++ +++++.+.. .....+++.++++|.++.+.|+.+.+
T Consensus 265 g~~~~~~~~~~~~di~t~sK~l~-~G~~~ig~~~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 340 (452)
T 3n5m_A 265 GKAFGFMNYDVKPDIITMAKGIT-SAYLPLSATAVK-REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-- 340 (452)
T ss_dssp SSSSGGGGTTCCCSEEEECGGGG-TTSSCCEEEEEE-HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH--
T ss_pred cccchhhhcCCCCCEEeeccccc-CCCcceEEEEEC-HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh--
Confidence 311 11222222557999999 59 999999997 999888743 12346788999999999999985433
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc-----------HHH
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE-----------IED 408 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~-----------~~~ 408 (456)
++.+++.++..+..++.+.+.+++++.+...++.|. |+++.+..+ ...
T Consensus 341 -------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~--------------~~~i~~~~~~~~~~~~~~~~~~~ 399 (452)
T 3n5m_A 341 -------ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGL--------------LVGIELVNDKETKEPIDNDKIAS 399 (452)
T ss_dssp -------TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSS--------------CEEEEEEEETTTTEECCHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE--------------EEEEEEecCCcccCCCCHHHHHH
Confidence 234444444444445555554444444433344443 566665211 245
Q ss_pred HHHHHHhCCEEeecCCCCCC-CCCeEEEE--ecCChhHHHHHHHHHHhhhC
Q 012785 409 CESFLKGNKILTRSGKHFGF-SPKYVRIS--MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 409 ~~~~l~~~gI~v~pg~~fg~-~~~~iRis--~~~~~e~i~~~l~~L~~~l~ 456 (456)
+.+.+.++||.++|+..|.. .++++||+ +..+++++++++++|+++++
T Consensus 400 ~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 400 VVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp HHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 77788899999999987743 47899997 44599999999999998874
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=226.83 Aligned_cols=299 Identities=12% Similarity=0.061 Sum_probs=200.2
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
..+|+|+.+.+.++.+.... ... .. ..+ ...|.+..+ ..+|+++++++++. +++++++|++
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~-a~~-~~-~~~---~~~y~~~~~-----~~~l~~~la~~~g~--------~~~~~~~~gt 63 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRK-AMA-QA-EVG---DDVYGEDPT-----INELERLAAETFGK--------EAALFVPSGT 63 (347)
T ss_dssp --CEECSCGGGCCCCHHHHH-HHH-TC-CCC---CGGGTCCHH-----HHHHHHHHHHHHTC--------SEEEEESCHH
T ss_pred ceEEEeccccCCCCCHHHHH-HHh-cC-CCC---CcccCCChH-----HHHHHHHHHHHhCC--------ceEEEecCcH
Confidence 46799999988776554333 211 11 111 124555455 48999999999863 3667777788
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh---hhhhcCCeEeeec-----cCcccccc---C------CCeEEEEc
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPS---ITDCVKSRLYKWA-----GDAKRFNK---D------GPYIELVT 236 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~~-----~d~~~l~~---~------~~~~i~v~ 236 (456)
+++.+++.++.++|| +|++++|+|..... .++..|++++.+. +|.+.++. . ++++|+++
T Consensus 64 ~a~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 64 MGNQVSIMAHTQRGD----EVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp HHHHHHHHHHCCTTC----EEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred HHHHHHHHHhcCCCC----EEEEcCcchhhhccccchhhccCeEEEEecCCCCccCHHHHHHHhccccccccCceEEEEe
Confidence 999999999999999 99999999865332 5667788887662 24444422 1 47899999
Q ss_pred CCCCCC-cccch--------HHhhhcCcEEEeeecCCCC-----CCC--CCCCCCCCcEEEecCccccCCCCceEEE-EE
Q 012785 237 SPNNPD-GSVRQ--------SVVNRSGGILVHDLAYYWP-----QYT--SITYPADHDLMLFTVSKSTGHAGTRIGW-AL 299 (456)
Q Consensus 237 ~P~NPt-G~~~~--------~l~~~~~~~iI~De~y~~~-----~~~--~~~~~~~~~i~i~S~SK~~g~~G~RiG~-l~ 299 (456)
+||||| |.+++ ++|+++|+++|+|++|... ... ++.... +.++.|+||.++.+ +|| ++
T Consensus 140 ~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~--d~~~~s~sK~l~~~---~G~~~~ 214 (347)
T 1jg8_A 140 NTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA--DSVMFCLSKGLCAP---VGSVVV 214 (347)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC--SEEEEESSSTTCCS---SCEEEE
T ss_pred ccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccc--cEEEEecccccCCC---ceEEEE
Confidence 999999 99876 2788999999999987320 111 111122 34556899998743 685 55
Q ss_pred EeCHHHHHHHHHHHhhccC--cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 300 VKDMEVAKKMTKYIELNTI--GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~--~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
. ++++++++...+..... ..+...+.++...|+. . .+.++ + ..++++.+.+.|+++ ++.+.
T Consensus 215 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~--------~~~~~---~-~~~~~~~l~~~L~~~-~~~~~ 277 (347)
T 1jg8_A 215 G-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTK---M--------VDRLK---E-DHENARFLALKLKEI-GYSVN 277 (347)
T ss_dssp E-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH---S--------STTHH---H-HHHHHHHHHHHHHHH-TCBCC
T ss_pred c-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH---H--------HHHHH---H-HHHHHHHHHHHHHhc-Cceec
Confidence 5 48898888776543332 2345566666666652 1 11222 2 234667788888876 34331
Q ss_pred -CCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHH
Q 012785 378 -ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 378 -~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
.+ +.++|+|++++. +.+.+.+.|.++||.++++. .+++|+++.. +++++++++++|
T Consensus 278 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-----~~~iRl~~~~~~~~e~i~~~~~~l 339 (347)
T 1jg8_A 278 PED-------------VKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVS-----DTEIRLVTHKDVSRNDIEEALNIF 339 (347)
T ss_dssp GGG-------------CCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEE-----TTEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCC-------------CcceEEEEEcccccCCHHHHHHHHHHCCCEEecCC-----CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 12 233479998862 46677777888999999853 5789999853 899999999999
Q ss_pred Hhhh
Q 012785 452 SKIL 455 (456)
Q Consensus 452 ~~~l 455 (456)
++++
T Consensus 340 ~~~l 343 (347)
T 1jg8_A 340 EKLF 343 (347)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=228.44 Aligned_cols=275 Identities=13% Similarity=0.044 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCH-HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGS-TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD 221 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~-~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 221 (456)
.++++.++++++. . ++++|++|+|+ ++++.+++..+..+|+. ...|+++.++|.. ...++..| +++.++.|
T Consensus 51 ~~l~~~la~~~g~---~--~~~~v~~~~g~gt~al~~~~~~l~~~~~~-g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~ 122 (360)
T 1w23_A 51 EQAQNLLRELLQI---P--NDYQILFLQGGASLQFTMLPMNLLTKGTI-GNYVLTGSWSEKA-LKEAKLLG-ETHIAAST 122 (360)
T ss_dssp HHHHHHHHHHHTC---C--TTEEEEEESSHHHHHHHHHHHHHCCTTCE-EEEEECSHHHHHH-HHHHHTTS-EEEEEEEC
T ss_pred HHHHHHHHHHhCC---C--CCceEEEECCcchHHHHHHHHHhcCCCCc-ccEEEecchhHHH-HHHHHHhC-CeEEeecc
Confidence 4566666666642 2 24699999999 99999999999876430 0056666666654 34466778 88776653
Q ss_pred -------cccccc----CCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCC
Q 012785 222 -------AKRFNK----DGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGH 290 (456)
Q Consensus 222 -------~~~l~~----~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~ 290 (456)
.+.++. .++++|++++||||||.+++++++++|+++|+|++|..... ++. ..+.+++++|+||.+|+
T Consensus 123 ~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~~i~~~~~~~li~D~a~~~~~~-~~~-~~~~di~~~s~sK~~~~ 200 (360)
T 1w23_A 123 KANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSR-PLK-VNQFGMIYAGAQKNLGP 200 (360)
T ss_dssp GGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSS-CCC-GGGCSEEEEETTTTTSC
T ss_pred cccCcCCccchHhhccCCCCCEEEEeCCCCCcceecccccccCCceEEEechhhcCCC-CcC-cccCCEEEEEcccccCC
Confidence 344443 25789999999999999988888899999999999985332 111 11125899999999997
Q ss_pred CCceEEEEEEeCHHHHHHHHHHH------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 291 AGTRIGWALVKDMEVAKKMTKYI------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 291 ~G~RiG~l~~~~~~~~~~l~~~~------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
+| +||++++ +++++++.... .....+.+...+.++.++++.+.+ ...+++.+++++
T Consensus 201 ~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~---------~~~~~~~~~~~~ 268 (360)
T 1w23_A 201 SG--VTVVIVK-KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKD---------LGGAEAIAKQNE 268 (360)
T ss_dssp TT--CEEEEEE-HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHH
T ss_pred CC--cEEEEEc-HHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHH---------hcCHHHHHHHHH
Confidence 77 9999997 77776554421 011134456666666676763211 115788899999
Q ss_pred HHHHHHHHHHHhcCCc-ccc-CC--CCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCe
Q 012785 359 TRWKQLRMAVQKSGLF-SVP-EL--PSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~-~~~-~~--~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~ 432 (456)
++++.+.+.|++++.+ ... .+ .+++ ++|+.+++ +...+.+.|.++||.++||..+ +++
T Consensus 269 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~---~~~ 332 (360)
T 1w23_A 269 EKAKIIYDTIDESNGFYVGHAEKGSRSLM-------------NVTFNLRNEELNQQFLAKAKEQGFVGLNGHRS---VGG 332 (360)
T ss_dssp HHHHHHHHHHHTTTTSSEESSCGGGBCSS-------------EEEEECSSHHHHHHHHHHHHHTTEESCBCCTT---TCS
T ss_pred HHHHHHHHHHHHccCcccccCCchhccCc-------------EEEEEcCCCccHHHHHHHHHHCCeeeecCCCC---CCe
Confidence 9999999999987633 321 12 1222 78998875 3455667788899999998764 678
Q ss_pred EEEEecC--ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+||++.. +++++++++++|++++
T Consensus 333 iRis~~~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 333 CRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHH
Confidence 9999974 8899999999999875
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=234.10 Aligned_cols=254 Identities=13% Similarity=0.092 Sum_probs=182.2
Q ss_pred CceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhh-hhcCCe------------Eeeec-cC
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSIT-DCVKSR------------LYKWA-GD 221 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~-~~~g~~------------~~~~~-~d 221 (456)
.++|++|+|++++++++++++.. +|+. +|++.+|+|+++...+ ...|.+ +..++ .|
T Consensus 114 ~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~---~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d 190 (420)
T 2pb2_A 114 AERVLFMNSGTEANETAFKLARHYACVRHSPFKT---KIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFND 190 (420)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCC---EEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTC
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCC---EEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCC
Confidence 36899999999999999998865 5532 8999999999876543 344543 33333 25
Q ss_pred cccccc---CCCeEEEEcCCCCCCcc-cch--------HHhhhcCcEEEeeecCCCCCCCCCC-----CCCCCcEEEecC
Q 012785 222 AKRFNK---DGPYIELVTSPNNPDGS-VRQ--------SVVNRSGGILVHDLAYYWPQYTSIT-----YPADHDLMLFTV 284 (456)
Q Consensus 222 ~~~l~~---~~~~~i~v~~P~NPtG~-~~~--------~l~~~~~~~iI~De~y~~~~~~~~~-----~~~~~~i~i~S~ 284 (456)
.+.++. .++++|+++++|||+|. +++ ++|+++|+++|+||+|.+..+.+.. .....+++ ||
T Consensus 191 ~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~ 268 (420)
T 2pb2_A 191 LHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TS 268 (420)
T ss_dssp HHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EE
T ss_pred HHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Ee
Confidence 565543 36788888888888885 344 3899999999999999864433211 01112233 78
Q ss_pred ccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 285 SKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
||.++ +|+|+||++++ +++++.+.......+++.++++|.++.+.|+.+.+ +...++++++++.+
T Consensus 269 sK~l~-~G~~iG~~~~~-~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~-------------~~~~~~~~~~~~~l 333 (420)
T 2pb2_A 269 AKALG-GGFPVSAMLTT-QEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT-------------PEVLQGIHTKRQQF 333 (420)
T ss_dssp CGGGG-TTSCCEEEEEC-HHHHTTCC----CCEECCCHHHHHHHHHHHHHHSS-------------HHHHHHHHHHHHHH
T ss_pred ccccc-CCCceEEEEEh-HHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHH
Confidence 99999 99999999997 88888776654556788999999999998885321 24566777888888
Q ss_pred HHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE
Q 012785 365 RMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS 436 (456)
Q Consensus 365 ~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis 436 (456)
.+.|+++ +.+...++ .++|+|++++. +...+.+.|.++||.++|+. ++++||+
T Consensus 334 ~~~L~~~~~~~~~~~~~~~--------------~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-----~~~iRl~ 394 (420)
T 2pb2_A 334 VQHLQAIDEQFDIFSDIRG--------------MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG-----ADVMRFA 394 (420)
T ss_dssp HHHHHHHHHHHCCEEEEEE--------------ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS-----TTEEEEC
T ss_pred HHHHHHHHhcCCCeEEEEe--------------cceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC-----CCEEEEE
Confidence 8888764 22221222 23378888753 35678888888999999963 6799999
Q ss_pred ec--CChhHHHHHHHHHHhhh
Q 012785 437 ML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 437 ~~--~~~e~i~~~l~~L~~~l 455 (456)
+. .+++++++++++|++++
T Consensus 395 ~~~~~t~eei~~~~~~l~~~l 415 (420)
T 2pb2_A 395 PSLVVEEADIHEGMQRFAQAV 415 (420)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 54 59999999999999875
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=236.08 Aligned_cols=271 Identities=14% Similarity=0.127 Sum_probs=192.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChh-hhhhhcCCe----
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYP-SITDCVKSR---- 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~-~~~~~~g~~---- 214 (456)
..+++++++++++. .+++|++|+|+++++.++++++. .+++ +|++.+|+|+... ..+...|.+
T Consensus 89 ~~~l~~~la~~~~~------~~~~v~~~~gg~~a~~~al~~~~~~~~~~----~vi~~~~~y~~~~~~~~~~~g~~~~~~ 158 (395)
T 1vef_A 89 RGEFYRTLTAILPP------ELNRVFPVNSGTEANEAALKFARAHTGRK----KFVAAMRGFSGRTMGSLSVTWEPKYRE 158 (395)
T ss_dssp HHHHHHHHHHTSCT------TEEEEEEESSHHHHHHHHHHHHHHHHSCC----EEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred HHHHHHHHHHhcCC------CcCEEEEcCcHHHHHHHHHHHHHHHhCCC----eEEEEcCCcCCCchhhhhhcCCccccc
Confidence 36677777776532 35799999999999999998774 5677 8999999998654 455556664
Q ss_pred --------Eeeec-cCcccccc---CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC--
Q 012785 215 --------LYKWA-GDAKRFNK---DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI-- 271 (456)
Q Consensus 215 --------~~~~~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~-- 271 (456)
+..++ .|.+.++. .++++++++.++||||.+++ ++|+++|+++|+||+|.+..+.+.
T Consensus 159 ~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~ 238 (395)
T 1vef_A 159 PFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 238 (395)
T ss_dssp GGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred ccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh
Confidence 33333 36665543 35678877666899998654 278999999999999995332211
Q ss_pred C---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 272 T---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 272 ~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
. .....+++ ||||.++ +|+|+||++++ +++++.+.......+++.+++.|.++.++|+.+. +
T Consensus 239 ~~~~~~~~~d~~--s~sK~~~-~g~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~-----------~ 303 (395)
T 1vef_A 239 AFEHFGIVPDIL--TLAKALG-GGVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE-----------R 303 (395)
T ss_dssp THHHHTCCCSEE--EECGGGG-TTSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH-----------H
T ss_pred HhhhcCCCCCEE--EEccccc-CCCceEEEEeh-HHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH-----------h
Confidence 1 01111232 8999999 59999999997 7787776553334567789999999888887321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHH-hCCEEeecCCCCC
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLK-GNKILTRSGKHFG 427 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~-~~gI~v~pg~~fg 427 (456)
+...++++++++.+.+.|++++. .+.. ..++.++|+|++++.+.+.+.+.|. ++||.++|+
T Consensus 304 --~~~~~~~~~~~~~l~~~l~~~~~-~~~~-----------~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~---- 365 (395)
T 1vef_A 304 --TRLWERAAELGPWFMEKLRAIPS-PKIR-----------EVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQA---- 365 (395)
T ss_dssp --HTTHHHHHHHHHHHHHHHHTSCC-TTEE-----------EEEEETTEEEEEESSCSHHHHHHHHHHHCEECEES----
T ss_pred --CCHHHHHHHHHHHHHHHHHHhhc-CceE-----------EEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecC----
Confidence 34567788888999999987642 1100 0012334889998754566777777 899999995
Q ss_pred CCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 428 FSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 428 ~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+++++||+++ .+++++++++++|+++++
T Consensus 366 -~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 366 -GPTVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp -STTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred -CCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 3689999875 489999999999999874
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=224.62 Aligned_cols=306 Identities=12% Similarity=0.097 Sum_probs=202.3
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+.+|||+.+.+..+.+. +.+..... . .+ ....|+.... ..++++.++++++ ++.+|++|+|++
T Consensus 7 ~~~id~~~~~~~~~~~~-v~~a~~~~-~-~~--~~~~~~~~~~-----~~~l~~~la~~~g-------~~~~v~~~~~gt 69 (356)
T 1v72_A 7 PPALGFSSDNIAGASPE-VAQALVKH-S-SG--QAGPYGTDEL-----TAQVKRKFCEIFE-------RDVEVFLVPTGT 69 (356)
T ss_dssp CCCCBCSCGGGCCCCHH-HHHHHHHT-T-SS--CCCSTTCSHH-----HHHHHHHHHHHHT-------SCCEEEEESCHH
T ss_pred CceEeeccCCccCCCHH-HHHHHHhh-c-cC--cccccccchH-----HHHHHHHHHHHhC-------CCCcEEEeCCcc
Confidence 46789988766554443 33322111 1 11 0123433222 2556666666553 134799999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh--hhhc--CCeEeeecc-----Ccccccc-C----------CCeEE
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSI--TDCV--KSRLYKWAG-----DAKRFNK-D----------GPYIE 233 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~--~~~~--g~~~~~~~~-----d~~~l~~-~----------~~~~i 233 (456)
+++.+++.++.++|| +|+++.|+|...... +... |.+++.++. |.+.++. . ++++|
T Consensus 70 ~a~~~al~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v 145 (356)
T 1v72_A 70 AANALCLSAMTPPWG----NIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACV 145 (356)
T ss_dssp HHHHHHHHTSCCTTE----EEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred HHHHHHHHHhcCCCC----EEEEcCccchhhhhchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEE
Confidence 999999999999999 999999998876655 6777 998887664 4444433 1 46889
Q ss_pred EEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCC-----CCCCCCC--CCCCcEEEecCccccCCCCceEE--
Q 012785 234 LVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWP-----QYTSITY--PADHDLMLFTVSKSTGHAGTRIG-- 296 (456)
Q Consensus 234 ~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~-----~~~~~~~--~~~~~i~i~S~SK~~g~~G~RiG-- 296 (456)
++++||| ||.+++ ++|+++|+++|+|++|.+. ...+... ..+..+++.|+||. | .|+|
T Consensus 146 ~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g---~~~G~g 220 (356)
T 1v72_A 146 SITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-G---VLAAEA 220 (356)
T ss_dssp EEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-T---CSSCEE
T ss_pred EEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-C---CcCccE
Confidence 9999987 999877 2789999999999999631 1111111 01334667799997 4 3566
Q ss_pred EEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 297 ~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
|++++ +++++++......... .....+.++...++.+.+ +......++++++++.+.+.|++++++.+
T Consensus 221 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 288 (356)
T 1v72_A 221 IVLFN-TSLATEMSYRRKRAGH-LSSKMRFLSAQIDAYLTD----------DLWLRNARKANAAAQRLAQGLEGLGGVEV 288 (356)
T ss_dssp EEESS-GGGHHHHHHHHHHTTC-CCSSTHHHHHHHHHHTST----------THHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred EEEEC-HHHHhhHHHHhhccCc-hhhhHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 88775 8888887765432211 111122222233332212 23344567778888999999988655655
Q ss_pred cCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
..|.+++ |+|++++ +.+.+.|.++||.++||. |+ ++++|+++.. +++++++++++|+++
T Consensus 289 ~~~~~~~-------------~~~~~~~---~~~~~~l~~~gi~v~~g~-~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~ 349 (356)
T 1v72_A 289 LGGTEAN-------------ILFCRLD---SAMIDALLKAGFGFYHDR-WG--PNVVRFVTSFATTAEDVDHLLNQVRLA 349 (356)
T ss_dssp ESCCCSS-------------EEEEEEC---HHHHHHHHHTTCBCBCSS-SS--TTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ccCCCcc-------------EEEEEcC---HHHHHHHHhcCeEEeccc-cC--CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4444444 8999885 256677788999999987 65 7899999753 889999999999987
Q ss_pred hC
Q 012785 455 LS 456 (456)
Q Consensus 455 l~ 456 (456)
++
T Consensus 350 l~ 351 (356)
T 1v72_A 350 AD 351 (356)
T ss_dssp C-
T ss_pred HH
Confidence 63
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=229.30 Aligned_cols=283 Identities=14% Similarity=0.154 Sum_probs=197.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+|+++++++++. ++.|++++|+ +++.+++. ++++|| +|++++|+|+.... .++..|.+++.
T Consensus 69 ~~~l~~~la~~~g~-------~~~i~~~sG~-~ai~~~~~-l~~~gd----~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 135 (403)
T 3cog_A 69 RNCLEKAVAALDGA-------KYCLAFASGL-AATVTITH-LLKAGD----QIICMDDVYGGTNRYFRQVASEFGLKISF 135 (403)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESCHH-HHHHHHHT-TSCTTC----EEEEESSCCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCHH-HHHHHHHH-HhCCCC----EEEEeCCCcchHHHHHHHHHHHcCCEEEE
Confidence 37999999999964 3678888875 89999998 889999 99999999997443 34678999988
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcC-cEEEeeecCCCCCC-CCCCCCCCCcEEEecCcc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSG-GILVHDLAYYWPQY-TSITYPADHDLMLFTVSK 286 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~-~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK 286 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++| +++|+|++|..+.+ .++ ..+.+++++|+||
T Consensus 136 v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~--~~~~div~~S~sK 213 (403)
T 3cog_A 136 VDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL--ALGADISMYSATK 213 (403)
T ss_dssp ECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT--TTTCSEEEEETTT
T ss_pred ECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc--ccCCeEEEEcChh
Confidence 876 5555543 36799999999999999987 4889999 99999999997533 233 2467999999999
Q ss_pred ccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 287 STGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 287 ~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
.++.+| +|+||+++++++++++++..........+++.+.++...++. +....+...++...+.
T Consensus 214 ~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---------------l~~r~~~~~~n~~~l~ 278 (403)
T 3cog_A 214 YMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT---------------LHVRMEKHFKNGMAVA 278 (403)
T ss_dssp TTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHH
T ss_pred hccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH---------------HHHHHHHHHHHHHHHH
Confidence 998766 589999996689999998877656677889988888877762 2223444555666667
Q ss_pred HHHHhcCCccccCCC-----CcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec---CC----------CC-
Q 012785 366 MAVQKSGLFSVPELP-----SQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS---GK----------HF- 426 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p---g~----------~f- 426 (456)
+.|++.+.+...-.+ .++ .+........++++.+.+++..+.+.+.+.+.||.++. |. .+
T Consensus 279 ~~l~~~~~v~~~~~~~L~~~p~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~ 357 (403)
T 3cog_A 279 QFLESNPWVEKVIYPGLPSHPQH-ELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTH 357 (403)
T ss_dssp HHHHTCTTEEEEECTTSTTSTTH-HHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTT
T ss_pred HHHhcCCCEEEEECCCCCCCCcH-HHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCcceeeeccccccc
Confidence 777665321110000 011 00000001224455557765556777888888886543 21 11
Q ss_pred -----------CCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 427 -----------GFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 -----------g~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|..+++||||++. +++.++.+.+.|++++
T Consensus 358 ~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 358 ASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp TTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 2336899999976 3455666666666554
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=223.07 Aligned_cols=280 Identities=10% Similarity=0.113 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeeec
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKWA 219 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~ 219 (456)
+|+++++++++. ++.|++++| ++++++++.++..+|| +|++++|+|+.+...+ +..|.++..++
T Consensus 2 ~l~~~la~~~g~-------~~~i~~~sG-~~a~~~~~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLEHA-------EACAATASG-MGAIAASVWTFLKAGD----HLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTC-------SEEEEESSH-HHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHhCC-------CeEEEeCCh-HHHHHHHHHHhcCCCC----EEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 689999999864 356666666 7999999999999999 9999999999987665 44788888776
Q ss_pred c-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhh-cCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCcccc
Q 012785 220 G-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNR-SGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 220 ~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~-~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~~ 288 (456)
. |.+.++. .+++++++++||||||.+++ ++|++ +|+++|+|++|....+ .++ ..+++++++|+||.+
T Consensus 70 ~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~d~~~~s~~K~~ 147 (331)
T 1pff_A 70 MAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL--DLGVDIVVHSATKYI 147 (331)
T ss_dssp TTSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTTT
T ss_pred CCCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh--hcCCcEEEEECcccc
Confidence 4 5555543 36789999999999999987 48999 9999999999984221 222 346899999999999
Q ss_pred CCCCce-EEEEEEeCH-HHHHHHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 289 GHAGTR-IGWALVKDM-EVAKKMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 289 g~~G~R-iG~l~~~~~-~~~~~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
+.+|.| +||++++ + +++++++..... .+.+.+++.+.++...++. +....+...++.+.+.
T Consensus 148 ~~~~~r~~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~ 211 (331)
T 1pff_A 148 NGHTDVVAGLVCSR-ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT---------------LDMRVKRAAENAQKVA 211 (331)
T ss_dssp SSSSSCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEeC-cHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---------------HHHHHHHHHHHHHHHH
Confidence 999999 8999997 6 888888877654 4567888888877666652 2223344555566666
Q ss_pred HHHHhcCCcccc---C--CCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCC---------------
Q 012785 366 MAVQKSGLFSVP---E--LPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKH--------------- 425 (456)
Q Consensus 366 ~~L~~~~~~~~~---~--~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~--------------- 425 (456)
+.|++.+.+... . ...++ .+........++++.+.++ +.+.+.+.+.++||.+++.+.
T Consensus 212 ~~l~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~ 289 (331)
T 1pff_A 212 EFLHEHKAVKKVYYPGLPDHPGH-EIAKKQMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTH 289 (331)
T ss_dssp HHHHHCTTCCCEECTTSTTSTTH-HHHHHHCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTS
T ss_pred HHHHcCCCeeEEECCCCCCCccH-HHHHhhCCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcc
Confidence 666654211100 0 00011 0000000123456777776 566788899999998876531
Q ss_pred ----------CCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 426 ----------FGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 ----------fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+|..++++|||++. ++++++.+++.|++++
T Consensus 290 ~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~~ 331 (331)
T 1pff_A 290 AGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLVL 331 (331)
T ss_dssp TTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC-
T ss_pred cccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 22336899999975 6788899988887753
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=233.33 Aligned_cols=320 Identities=8% Similarity=-0.014 Sum_probs=205.4
Q ss_pred CCCCeEEecCCCCC--CC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT--MY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..+.+. +. .++.+.++.. ..+... ..|+...| ..++++++++++..... ...+++|++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~-~~~~~~----~~~~~~~~-----~~~~~~~l~~~la~~~~-~~~~~~v~~ 109 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVS-AAAANP----AGATILSA-----SNAPAVTLAERLLASFP-GEGTHKIWF 109 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHH-HHHHSC----SCSCSSSS-----EEHHHHHHHHHHHHTTT-CTTTEEEEE
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHH-HHHHhc----cCcccccc-----CCHHHHHHHHHHHHhCC-CCCCCEEEE
Confidence 45678999988873 22 3444443322 112111 23443344 35677777777644211 111269999
Q ss_pred ccCHHHHHHHHHHHh--cCCCCCCCcEEEEeCCCCCChhhhhhhcCCe-----------------Eeeecc---------
Q 012785 169 GTGSTQLFQAALYAL--SSQDASEPISVVSAAPYYSSYPSITDCVKSR-----------------LYKWAG--------- 220 (456)
Q Consensus 169 t~G~~~al~~~~~~l--~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~-----------------~~~~~~--------- 220 (456)
|+|+++++..+++++ ..+++ +|++.+|+|+++...+...+.. .++++.
T Consensus 110 ~~ggsea~~~al~~~~~~~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (439)
T 3dxv_A 110 GHSGSDANEAAYRAIVKATGRS----GVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDA 185 (439)
T ss_dssp ESSHHHHHHHHHHHHHHHHSCC----EEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCC----EEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHH
Confidence 999999999999985 23555 8999999998877665544321 122221
Q ss_pred Cccccc-------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC--C-CCCCCcEEE
Q 012785 221 DAKRFN-------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI--T-YPADHDLML 281 (456)
Q Consensus 221 d~~~l~-------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~--~-~~~~~~i~i 281 (456)
|.+.++ ..+++++++++++||+|.+.+ ++|+++|+++|+||+|.+..+.+. . ...+...-+
T Consensus 186 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di 265 (439)
T 3dxv_A 186 ILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDI 265 (439)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCE
Confidence 344442 235678888777888888755 279999999999999986433221 1 111111223
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
.||||.++ +|+|+||++++ +++++.+.......++ .++++|.++.++|+.+.+ ++++++.++..+..+
T Consensus 266 ~s~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~---------~~~~~~~~~~~~~~~ 333 (439)
T 3dxv_A 266 LVLGKGLG-GGLPLSAVIAP-AEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR---------DDLPAMAERKGRLLR 333 (439)
T ss_dssp EEECGGGG-TTSCCEEEEEE-HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHH
T ss_pred EEEcchhc-CCcceEEEEEC-HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHH
Confidence 39999999 79999999997 8888887766545677 899999999998885432 223444444444444
Q ss_pred HHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec--------Cc--cHHHHHHHHHhCCEEeecCCCCCCCCC
Q 012785 362 KQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC--------EQ--EIEDCESFLKGNKILTRSGKHFGFSPK 431 (456)
Q Consensus 362 ~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~--------~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~ 431 (456)
+.+.+.+..++.+...++.| +|+|+.+ +. ....+.+.+.++||.++|+.. .++
T Consensus 334 ~~l~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~ 396 (439)
T 3dxv_A 334 DGLSELAKRHPLIGDIRGRG--------------LACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM---NGN 396 (439)
T ss_dssp HHHHHHHHHCTTEEEEEEET--------------TEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST---TSC
T ss_pred HHHHHHHHhCCCeEEEEEEE--------------EEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC---CCC
Confidence 44444444444333333333 3677766 22 245677778888999999753 358
Q ss_pred eEEEEec--CChhHHHHHHHHHHhhh
Q 012785 432 YVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
++||+++ .+++++++++++|++++
T Consensus 397 ~iRi~~~~~~t~e~i~~~l~~l~~~l 422 (439)
T 3dxv_A 397 VLEFTPPLTITETDIHKALDLLDRAF 422 (439)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999754 48999999999999876
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=233.58 Aligned_cols=321 Identities=12% Similarity=0.038 Sum_probs=208.5
Q ss_pred CCCCeEEecCCC--CCC-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGD--PTM-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~--p~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..||+..+. ..+ ..++.+.++.. ..+... ..|....+ ..+++.++++++...-.. ...++|++
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~-~~~~~~----~~~~~~~~-----~~~~~~~la~~l~~~~~~-~~~~~v~~ 130 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIA-DQATHF----THTCFMVT-----PYEQYVQVAELLNALTPG-DHDKRTAL 130 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHH-HHHHHC----SCCTTTTS-----CCHHHHHHHHHHHHHSSC-SSCEEEEE
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHH-HHHHhc----cccccCcC-----CCHHHHHHHHHHHHhCCC-CCCcEEEE
Confidence 456788887763 222 22344443222 112111 23443333 356666666666432111 12468999
Q ss_pred ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC----------------eEeeecc---C------
Q 012785 169 GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS----------------RLYKWAG---D------ 221 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~----------------~~~~~~~---d------ 221 (456)
|+|++++++.+++.+.. .++ +|++.+|+|+++...+...+. ..++++. |
T Consensus 131 ~~sGseA~~~alk~a~~~~g~~----~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 206 (453)
T 4ffc_A 131 FNSGAEAVENAIKVARLATGRP----AVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTG 206 (453)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCH
T ss_pred eCcHHHHHHHHHHHHHHhcCCC----EEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccch
Confidence 99999999999987753 445 899999999988876665532 2223321 2
Q ss_pred -------cccccc---CCCeEEEEcCCCCCCcccc--h--------HHhhhcCcEEEeeecCCCCCCCCCCC---CCCCc
Q 012785 222 -------AKRFNK---DGPYIELVTSPNNPDGSVR--Q--------SVVNRSGGILVHDLAYYWPQYTSITY---PADHD 278 (456)
Q Consensus 222 -------~~~l~~---~~~~~i~v~~P~NPtG~~~--~--------~l~~~~~~~iI~De~y~~~~~~~~~~---~~~~~ 278 (456)
.+.++. .+..++++++|+||+|.+. + ++|+++|+++|+||+|.+..+.+... ..+..
T Consensus 207 ~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~ 286 (453)
T 4ffc_A 207 EEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIV 286 (453)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCC
Confidence 122222 2345666678888876433 2 37999999999999998754433211 11223
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
..+.||||.++ .|+|+||++++ +++++.+.......+++.++++|.++.++|+.+.+ ++++++.++..+
T Consensus 287 pdi~t~sK~~~-~G~~~G~~~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---------~~~~~~~~~~~~ 355 (453)
T 4ffc_A 287 PDIVTMAKGIA-GGMPLSAVTGR-AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE---------LDLPARARAIEA 355 (453)
T ss_dssp CSEEEECGGGG-TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHH
T ss_pred cchHhhhhhhc-CCcCeEEEEEC-HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh---------hhHHHHHHHHHH
Confidence 33668999999 59999999997 99998887766677899999999999999985433 234555555555
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------cHHHHHHHHHhCCEEeecCCCCCCC
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------EIEDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
..++.+.+.++.++.+...++.| +|+|+.+.. ....+.+.+.++||.++|+..|
T Consensus 356 ~l~~~l~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--- 418 (453)
T 4ffc_A 356 SVTSRLSALAEEVDIIGEVRGRG--------------AMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTF--- 418 (453)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEET--------------TEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTT---
T ss_pred HHHHHHHHHHhhCCCeEEEEeec--------------eEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCC---
Confidence 55555665555555443333333 367777621 2456778888999999997654
Q ss_pred CCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.+++||+++ .++|++++++++|++++
T Consensus 419 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l 446 (453)
T 4ffc_A 419 GNVIRLLPPLVIGDDLLDEGITALSDII 446 (453)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 468999765 48999999999999876
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=234.76 Aligned_cols=277 Identities=11% Similarity=0.021 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCC-
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKS- 213 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~- 213 (456)
.++++++++++...- +. ..++|++|+|++++++.+++++.. +++ +|++.+|+|+++...+...+.
T Consensus 93 ~~~~~~la~~l~~~~-~~-~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~~~ 166 (459)
T 4a6r_A 93 HPAVVELSSLLAEVT-PA-GFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKK----TLIGRWNGYHGSTIGGASLGGM 166 (459)
T ss_dssp CHHHHHHHHHHHHHS-CT-TCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHHSCC
T ss_pred CHHHHHHHHHHHHhC-CC-CCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCC----EEEEECCCcCCccHHHHhhcCC
Confidence 556666666664321 11 346999999999999999999875 456 999999999998877666532
Q ss_pred --------------eEeeecc--------C--------cccccc-------CCCeEEEEcCCCCCCcccc-h--------
Q 012785 214 --------------RLYKWAG--------D--------AKRFNK-------DGPYIELVTSPNNPDGSVR-Q-------- 247 (456)
Q Consensus 214 --------------~~~~~~~--------d--------~~~l~~-------~~~~~i~v~~P~NPtG~~~-~-------- 247 (456)
..+.++. | .+.++. .++++++++.++|++|.+. +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~ 246 (459)
T 4a6r_A 167 KYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIE 246 (459)
T ss_dssp TTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred hhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 2222221 2 233322 2345555544455556644 2
Q ss_pred HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHH---HHHhhccCcCC
Q 012785 248 SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMT---KYIELNTIGVS 321 (456)
Q Consensus 248 ~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~---~~~~~~~~~~s 321 (456)
++|+++|+++|+||+|.+..+.+-. ...+...-+.+|||.++..|+|+||++++ +++++.+. ......+++.+
T Consensus 247 ~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~-~~i~~~~~~~~~~~~~~t~~~~ 325 (459)
T 4a6r_A 247 RICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVG-KRVAEGLIAGGDFNHGFTYSGH 325 (459)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEC-HHHHHHHHHHCTTHHHHHHCSC
T ss_pred HHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeC-HHHHHHhhcCCCcccCCCCCCC
Confidence 3899999999999999975444311 11111112447899998444999999996 99999987 33455688999
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH-HHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEe
Q 012785 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN-HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWL 400 (456)
Q Consensus 322 ~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~ 400 (456)
+++|.++.+.|+.+.+ ++++++.+ +..+..++.+.+.|++++.+...++.|. |+++
T Consensus 326 ~~~~aaa~aal~~~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~--------------~~~~ 382 (459)
T 4a6r_A 326 PVCAAVAHANVAALRD---------EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGM--------------VQAF 382 (459)
T ss_dssp HHHHHHHHHHHHHHHH---------TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETT--------------EEEE
T ss_pred HHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE--------------EEEE
Confidence 9999999999985433 23455555 4555555555455555544444444333 5677
Q ss_pred ecCcc-------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 401 KCEQE-------------IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 401 ~~~~~-------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
.+..+ ...+.+.+.++||.++|+. +++||+ +..++|++++++++|++++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------~~iRi~~~~~~t~e~i~~~l~~l~~~l 446 (459)
T 4a6r_A 383 TLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG------DHIVSAPPLVMTRAEVDEMLAVAERCL 446 (459)
T ss_dssp EECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET------TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEecCccccccccchHHHHHHHHHHHHHCCeEEecCC------CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 66421 4567788889999999952 799999 4459999999999999876
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-27 Score=236.96 Aligned_cols=313 Identities=12% Similarity=0.035 Sum_probs=199.0
Q ss_pred CCCCeEEecCCCC--CCC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDP--TMY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..+.. .+. .++.+.++.. ..+.... ...|+... ..+|++++++++. ..++|++
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~-~~~~~~~--~~~~~~~~------~~~l~~~la~~~~-------~~~~v~~ 116 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAIT-TAAENGV--LYGTPTAL------EVKFAKMLKEAMP-------ALDKVRF 116 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHH-HHHHHCS--CCSSCCHH------HHHHHHHHHHHCT-------TCSEEEE
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHH-HHHHhCc--CCCCCCHH------HHHHHHHHHHhCC-------CCCEEEE
Confidence 4667888877652 222 2344443222 1122221 12344332 3677777777653 2479999
Q ss_pred ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC--------------------eEeeecc-Ccccc
Q 012785 169 GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS--------------------RLYKWAG-DAKRF 225 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~--------------------~~~~~~~-d~~~l 225 (456)
|+|++++++.+++++.. +++ +|++.+|+|+++...+...+. .++.++. |.+.+
T Consensus 117 ~~sGsea~~~ai~~a~~~~~~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 192 (434)
T 3l44_A 117 VNSGTEAVMTTIRVARAYTGRT----KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETL 192 (434)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHH
T ss_pred eCchHHHHHHHHHHHHHhhCCC----EEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHH
Confidence 99999999999998765 667 999999999997765544332 1222222 55554
Q ss_pred cc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC---CCCCcEEEecCccc
Q 012785 226 NK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY---PADHDLMLFTVSKS 287 (456)
Q Consensus 226 ~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~---~~~~~i~i~S~SK~ 287 (456)
+. .++++++++.+||++|.+.+ ++|+++|+++|+||+|.+. ..+... ..+...-+.||||.
T Consensus 193 e~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~ 271 (434)
T 3l44_A 193 KEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKV 271 (434)
T ss_dssp HHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGG
T ss_pred HHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhh
Confidence 32 23455555444556666553 3899999999999999865 332111 11111225689999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
+| +|+|+||++++ +++++.+.+. ....+++.++++|.++.+.|+.+.+ ++++++.++..+..++.+
T Consensus 272 ~~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---------~~~~~~~~~~~~~l~~~L 340 (434)
T 3l44_A 272 IG-GGLPIGAYGGK-KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---------EGLYEKLDELGATLEKGI 340 (434)
T ss_dssp GG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---------TTHHHHHHHHHHHHHHHH
T ss_pred hc-CCcCeeeEEEc-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHHH
Confidence 99 89999999986 9998887652 2345789999999999999985433 234444444444444444
Q ss_pred HHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------------cHHHHHHHHHhCCEEeecCCCCCCC
Q 012785 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------------EIEDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
.+.+...+.....++.| +|+++.+.. ....+.+.|.++||.++|+.
T Consensus 341 ~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----- 401 (434)
T 3l44_A 341 LEQAAKHNIDITLNRLK--------------GALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK----- 401 (434)
T ss_dssp HHHHHHTTCCEEEEEET--------------TEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST-----
T ss_pred HHHHHhCCCCEEEEeec--------------cEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC-----
Confidence 44444344322222223 366666521 12557778889999999964
Q ss_pred CCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.+++|+++..++|++++++++|++++
T Consensus 402 ~~~~rl~~~~t~e~i~~~l~~l~~~l 427 (434)
T 3l44_A 402 YEAWFLTTEHTKEDIEYTIEAVGRAF 427 (434)
T ss_dssp TCCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecccCHHHHHHHHHHHHHHH
Confidence 45789988779999999999999876
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=232.02 Aligned_cols=321 Identities=12% Similarity=0.030 Sum_probs=206.3
Q ss_pred CCCCeEEecCCC--CCC-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGD--PTM-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~--p~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..+. ..+ ..++.+.++.. ..+.. ...|....+ ..+++.++++++...... ...++|++
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~-~~~~~----~~~~~~~~~-----~~~~~~~la~~l~~~~~~-~~~~~v~~ 127 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVR-SQVGD----FTHTCFMVT-----PYEGYVAVCEQLNRLTPV-RGDKRSAL 127 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHH-HHHTT----CSCCTTTTS-----CCHHHHHHHHHHHHHSSC-CSSEEEEE
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHH-HHHHh----cccccCCcc-----CCHHHHHHHHHHHHhCCc-CCCCEEEE
Confidence 456778887663 222 22333443222 11221 123443334 356677777776432211 12468999
Q ss_pred ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC----------------eEeeec---------cC
Q 012785 169 GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS----------------RLYKWA---------GD 221 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~----------------~~~~~~---------~d 221 (456)
|+|++++++.+++.+.. .++ +|++.+|+|+++...+...+. ..++++ .|
T Consensus 128 ~~sGseA~~~Alk~a~~~~g~~----~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 203 (451)
T 3oks_A 128 FNSGSEAVENAVKIARSHTHKP----AVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKE 203 (451)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTT
T ss_pred eCcHHHHHHHHHHHHHHhcCCC----eEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccc
Confidence 99999999999988764 345 899999999988876655432 222332 11
Q ss_pred --------cc----cccc---CCCeEEEEcCCCCCCcccc-h---------HHhhhcCcEEEeeecCCCCCCCCCC---C
Q 012785 222 --------AK----RFNK---DGPYIELVTSPNNPDGSVR-Q---------SVVNRSGGILVHDLAYYWPQYTSIT---Y 273 (456)
Q Consensus 222 --------~~----~l~~---~~~~~i~v~~P~NPtG~~~-~---------~l~~~~~~~iI~De~y~~~~~~~~~---~ 273 (456)
.+ .++. .+..++++++|.|++|.+. + ++|+++|+++|+||+|.+..+.+.. .
T Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~ 283 (451)
T 3oks_A 204 LATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACE 283 (451)
T ss_dssp TTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGG
T ss_pred cchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhh
Confidence 11 1111 1234555667777665432 2 3799999999999999865443211 1
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
..+...-+.||||.++ +|+|+||++++ +++++.+.......+++.++++|.++.++|+.+.+ ++++++.
T Consensus 284 ~~~~~pdi~t~sK~l~-~G~~iG~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---------~~~~~~~ 352 (451)
T 3oks_A 284 HEGIDPDLIVTAKGIA-GGLPLSAVTGR-AEIMDSPHVSGLGGTYGGNPIACAAALATIETIES---------EGLVARA 352 (451)
T ss_dssp GGTCCCSEEEECGGGG-TTSSCEEEEEE-HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---------TTHHHHH
T ss_pred hcCCCCCeeeehhhhh-CCcceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh---------hhHHHHH
Confidence 1122222448999999 69999999997 99998887766677899999999999999985433 2344555
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC-------c--cHHHHHHHHHhCCEEeecCC
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-------Q--EIEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~--~~~~~~~~l~~~gI~v~pg~ 424 (456)
++..+..++.+.+.++.++.+...++.|. |+|+.+. . ....+.+.+.++||.++|+.
T Consensus 353 ~~~~~~l~~~L~~~~~~~~~~~~~~~~G~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 418 (451)
T 3oks_A 353 QQIEKIMKDRLGRLQAEDDRIGDVRGRGA--------------MIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG 418 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEETT--------------EEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeeE--------------EEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC
Confidence 55555555555555555554433333333 6777762 1 24567788889999999976
Q ss_pred CCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 425 HFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.| .+++||+++ .+++++++++++|++++
T Consensus 419 ~~---~~~iRi~~~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 419 TY---GNVVRFLPPLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp TT---SCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CC---CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 55 468999754 48999999999999876
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=226.23 Aligned_cols=282 Identities=14% Similarity=0.119 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~ 218 (456)
.+|++.++++.+ .+++++++|+++++.+++.+++++|| +|++++|+|+.+...++. .|.+++.+
T Consensus 84 ~~l~~~la~~~g--------~~~~~~~~sG~~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v 151 (414)
T 3ndn_A 84 SVFEERLRLIEG--------APAAFATASGMAAVFTSLGALLGAGD----RLVAARSLFGSCFVVCSEILPRWGVQTVFV 151 (414)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHhCCCC----EEEEcCCccchHHHHHHHHHHHcCcEEEEe
Confidence 566666776664 24788888889999999999999999 999999999998777654 89999888
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+||+|..+. ..++ ..+.++++.|+||.+
T Consensus 152 ~~~d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~--~~g~div~~S~sK~l 229 (414)
T 3ndn_A 152 DGDDLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF--PLGVDVVVYSGTKHI 229 (414)
T ss_dssp CTTCHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG--GGTCSEEEEETTTTT
T ss_pred CCCCHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch--hcCCCeEeccCCccc
Confidence 76 5555543 36799999999999999976 48999999999999998321 1222 234579999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHH-HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAK-KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~-~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
|.+| +|+||++++ ++.+. .++..........++....++...++ .+....++..++++.+.+
T Consensus 230 ~~~G~~~~G~vv~~-~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~---------------~l~~r~~~~~~~a~~l~~ 293 (414)
T 3ndn_A 230 DGQGRVLGGAILGD-REYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE---------------TLAIRVQHSNASAQRIAE 293 (414)
T ss_dssp TCSSCCCCEEEEEC-HHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG---------------GHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEEC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 9778 899999997 66665 67655554455566666555554443 344556667788889999
Q ss_pred HHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCcc-------HHHHHHHHHhCCEEeecCCCC---------
Q 012785 367 AVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQE-------IEDCESFLKGNKILTRSGKHF--------- 426 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~-------~~~~~~~l~~~gI~v~pg~~f--------- 426 (456)
.|++++.+.....++.- .....+.....+.++|+.+++. .+.+.+.++..++.+..|..+
T Consensus 294 ~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~ 373 (414)
T 3ndn_A 294 FLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATT 373 (414)
T ss_dssp HHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGT
T ss_pred HHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCcccc
Confidence 99887654322111100 0000011122355799998653 344566667778888888754
Q ss_pred -------------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 427 -------------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 -------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|..++.||||++ .|+.+++++.|++.|+
T Consensus 374 ~~~~~~~~~~~~~g~~~~~iRlsvG--~e~~~dli~dl~~al~ 414 (414)
T 3ndn_A 374 THRAMGPEGRAAIGLGDGVVRISVG--LEDTDDLIADIDRALS 414 (414)
T ss_dssp TTCTTHHHHHHHTTCCTTEEEEECC--SSCHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeC--cCCHHHHHHHHHHhhC
Confidence 234689999985 4566777788877663
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=220.89 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=206.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
..+|++.++++++. +++++++|++++++.++.+++++|| +|+++.|+|+.+...+ +..|.++..
T Consensus 68 ~~~l~~~la~~~g~--------~~~~~~~sGt~A~~~al~~~~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~ 135 (392)
T 3qhx_A 68 RTALEAALAAVEDA--------AFGRAFSSGMAAADCALRAMLRPGD----HVVIPDDAYGGTFRLIDKVFTGWNVEYTP 135 (392)
T ss_dssp HHHHHHHHHHHTTC--------SEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCcchHHHHHHHHHHhcCcEEEE
Confidence 36888888888753 3788888889999999999999999 9999999999876665 667998888
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|..+ +...+...+.+++++|+||.+
T Consensus 136 v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~-~~~~~~~~~~di~~~S~sK~l 214 (392)
T 3qhx_A 136 VALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASP-ALQQPLSLGADVVLHSTTKYI 214 (392)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCT-TTCCGGGGTCSEEEEETTTTT
T ss_pred eCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccc-ccCChHHhCCcEEEEcCcccc
Confidence 776 4555543 46799999999999999976 4899999999999999853 211122345689999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|.+| +|+||++++++++.+.+.........+.+++.+.++...++. +....++..++.+.+.+.
T Consensus 215 g~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---------------l~~~~~~~~~~~~~l~~~ 279 (392)
T 3qhx_A 215 GGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT---------------LVLRMQRHSENAAAVAEF 279 (392)
T ss_dssp TCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH---------------HHHHHHHHHHHHHHHHHH
Confidence 9777 899999997678999998887777888899988888877762 333455667777888888
Q ss_pred HHhcCCccccCCCCcc----cccccccCCCCCceEEeecCcc---HHHHHHHHHhCCEEeecCCCCC-------------
Q 012785 368 VQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQE---IEDCESFLKGNKILTRSGKHFG------------- 427 (456)
Q Consensus 368 L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~l~~~gI~v~pg~~fg------------- 427 (456)
|++++.+.....++.- .....+.....+..+++.++++ .+.+...++..|+.+..|+.+.
T Consensus 280 L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~ 359 (392)
T 3qhx_A 280 LAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHAST 359 (392)
T ss_dssp HHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGG
T ss_pred HhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCccccccccc
Confidence 9887644322111100 0000000112244688888652 4456666777788888777542
Q ss_pred ------CCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 428 ------FSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 428 ------~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
..++.||||++. |+.+++++.|.+.|+
T Consensus 360 ~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al~ 392 (392)
T 3qhx_A 360 AGSQLEVPDDLVRLSVGI--EDVADLLDDLKQALG 392 (392)
T ss_dssp BTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred CHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHhC
Confidence 236789999853 466667777776653
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-25 Score=222.94 Aligned_cols=306 Identities=14% Similarity=0.052 Sum_probs=210.5
Q ss_pred EecCCCCCCCchhHhhhcccccccccCccccccccC-CCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHH
Q 012785 98 NVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLF 176 (456)
Q Consensus 98 ~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al 176 (456)
+|+.|+|+++.|+.+.+... ..+..+ .|++ ..+ ..+|+++++++++. ++|++|+|+++++
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~-~~~~~~-----~y~~~~~~-----~~~l~~~la~~~~~--------~~v~~~~ggt~al 80 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLD-RALDSQ-----WLSNGGPL-----VREFEERVAGLAGV--------RHAVATCNATAGL 80 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHH-HHHHHT-----CCSSSCHH-----HHHHHHHHHHHHTS--------SEEEEESCHHHHH
T ss_pred cccccCCCCCChHHHHHHHH-HHHhcC-----CcccCCHH-----HHHHHHHHHHHhCC--------CeEEEeCCHHHHH
Confidence 68999999988765554321 222222 3666 555 48999999999963 4899999999999
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCCCcccc
Q 012785 177 QAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVR 246 (456)
Q Consensus 177 ~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~ 246 (456)
++++.++. +|| +|++++|+|+.+...++..|++++.++.|. +.++. .++++|+++ ||||...
T Consensus 81 ~~~l~~l~-~gd----~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~ 152 (424)
T 2po3_A 81 QLLAHAAG-LTG----EVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPC 152 (424)
T ss_dssp HHHHHHHT-CCS----EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCC
T ss_pred HHHHHHcC-CCC----EEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcC
Confidence 99999985 678 999999999999999999999998776643 33432 256888774 4899875
Q ss_pred h-----HHhhhcCcEEEeeecCCC-CCCC--CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC
Q 012785 247 Q-----SVVNRSGGILVHDLAYYW-PQYT--SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI 318 (456)
Q Consensus 247 ~-----~l~~~~~~~iI~De~y~~-~~~~--~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~ 318 (456)
+ ++|+++|+++|+||+|.. ..+. ++.... +++++||||..+++|.|+||++++++++++++.........
T Consensus 153 ~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~--di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~ 230 (424)
T 2po3_A 153 AADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLG--DAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFD 230 (424)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSS--SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTT
T ss_pred CHHHHHHHHHHcCCEEEEECccccCCeECCeeccccc--CEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcc
Confidence 5 389999999999999983 3222 221112 39999999766777799999999768899888876542111
Q ss_pred c--------C-ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCCccccccc
Q 012785 319 G--------V-SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPSQFCTFLG 388 (456)
Q Consensus 319 ~--------~-s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~ 388 (456)
. . ..+.+.++...+.. .+.++...++.++.++.+.+.|++++++.+.. +.|+..+|+
T Consensus 231 ~~~~~~~~g~~~~~~~~~aa~~l~~------------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~- 297 (424)
T 2po3_A 231 LPGGSPAGGTNAKMSEAAAAMGLTS------------LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQ- 297 (424)
T ss_dssp CTTCCTTCCCBCCCCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCC-
T ss_pred ccccccccCcCCCcCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccE-
Confidence 0 1 01223333333331 23455666677777778888887765565544 334321110
Q ss_pred ccCCCCCceEEeecCc-----cHHHHHHHHHhCCEEeecCCCCCC---------------CCC-------eEEEEec--C
Q 012785 389 RAFEPQPAFAWLKCEQ-----EIEDCESFLKGNKILTRSGKHFGF---------------SPK-------YVRISML--D 439 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~-----~~~~~~~~l~~~gI~v~pg~~fg~---------------~~~-------~iRis~~--~ 439 (456)
++++.+++ +.+.+.+.|.++||.+++. |+. .++ .||+++. .
T Consensus 298 --------~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~ 367 (424)
T 2po3_A 298 --------YVIVEIDEATTGIHRDLVMEVLKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAI 367 (424)
T ss_dssp --------CEEEEECHHHHSSCHHHHHHHHHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTC
T ss_pred --------EEEEEECCccchhhHHHHHHHHHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCC
Confidence 34466652 5677888899999999872 220 011 2777632 3
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|++++
T Consensus 368 t~e~i~~~~~~L~~~~ 383 (424)
T 2po3_A 368 GDDDIRRVADLLRLCA 383 (424)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999998875
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=225.53 Aligned_cols=280 Identities=12% Similarity=0.069 Sum_probs=194.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. ++.|++|+| ++++++++.++ .++|| +|+++.|+|+.+...++..|++++.++.
T Consensus 40 ~~~l~~~la~~~~~-------~~~i~~~sG-t~al~~~l~~l~~~~gd----~Vi~~~~~~~~~~~~~~~~g~~~~~v~~ 107 (388)
T 1b9h_A 40 VNSFEREFAAHHGA-------AHALAVTNG-THALELALQVMGVGPGT----EVIVPAFTFISSSQAAQRLGAVTVPVDV 107 (388)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESCH-HHHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHhCC-------CeEEEeCCH-HHHHHHHHHHcCCCCcC----EEEECCCccHHHHHHHHHcCCEEEEEec
Confidence 48999999999964 357888887 89999999999 88999 9999999999999999999999987776
Q ss_pred Cc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecC
Q 012785 221 DA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~ 284 (456)
|. +.++. .++++|+ |+||||.+.+ ++|+++|+++|+|++|... .+.+.....-.++.+.||
T Consensus 108 ~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~ 184 (388)
T 1b9h_A 108 DAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSF 184 (388)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEEC
T ss_pred CCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEc
Confidence 53 33322 2456654 9999999876 4899999999999999852 221111011127999999
Q ss_pred ccccCCCCceEEEEEEeCHHH--HHHHHHHHhhc-----------cCcCC-hHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 285 SKSTGHAGTRIGWALVKDMEV--AKKMTKYIELN-----------TIGVS-KDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 285 SK~~g~~G~RiG~l~~~~~~~--~~~l~~~~~~~-----------~~~~s-~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
||..+++|.|+||++++++.+ ++.+....... ..+.+ .+.+..+..++.. .+++
T Consensus 185 s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~------------~~~l 252 (388)
T 1b9h_A 185 QNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ------------LARL 252 (388)
T ss_dssp CTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH------------HTTH
T ss_pred cCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH------------HHHH
Confidence 987777788999999974446 56665443210 01111 1122222222221 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHF 426 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~f 426 (456)
++.+++++++++.+.+.|++++++.+..+.... .+..++|+|+.++. +.+.+.+.|.++||.++++..-
T Consensus 253 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~ 325 (388)
T 1b9h_A 253 DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRA-------DRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRA 325 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTC-------CBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCCcCC-------CccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCc
Confidence 677888889999999999987555544321000 01123489999874 4566888888999999986421
Q ss_pred ----------CC------------------CCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 427 ----------GF------------------SPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 ----------g~------------------~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
+. ..+.|||++.. ++++++.+++.|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 326 IYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp GGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred cccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 00 01369999863 7899999999999875
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=220.81 Aligned_cols=282 Identities=12% Similarity=0.111 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~~ 218 (456)
.+|+++++++++. ++.|++++|+ +++++++.+++++|| +|++++|.|+.+.. .++..|+++..+
T Consensus 117 ~~l~~~lA~l~g~-------~~~v~~~sG~-~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 117 VVLEEKISALEGA-------ESTLLMASGM-CASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp HHHHHHHHHHHTC-------SEEEEESCHH-HHHHHHHHHHSCSSC----EEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred HHHHHHHHHHhCC-------CcEEEeCCHH-HHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 5899999998863 3567777776 999999999999999 99999999998766 356679998887
Q ss_pred cc-Ccccccc---CCC-eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFNK---DGP-YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~~---~~~-~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.++. .++ ++|++++|+||||.+.+ ++|+++|+++|+|++|..+... .+...+.+++++|+||.+
T Consensus 185 ~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~Div~~S~sK~~ 263 (445)
T 1qgn_A 185 DPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGADLVLHSATKFL 263 (445)
T ss_dssp CSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTCSEEEECTTTTT
T ss_pred CCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCCEEEEECCcccc
Confidence 76 4555543 367 99999999999999987 4899999999999999854221 122345689999999999
Q ss_pred CCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 GHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|.+| +|+||++++ +++++++...........+++...++...++ .+....+...++++.+.+.
T Consensus 264 gg~gd~~~G~l~~~-~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~---------------~l~~r~~~~~~~a~~l~~~ 327 (445)
T 1qgn_A 264 GGHNDVLAGCISGP-LKLVSEIRNLHHILGGALNPNAAYLIIRGMK---------------TLHLRVQQQNSTALRMAEI 327 (445)
T ss_dssp TCSSSCCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG---------------GHHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEEEC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 8555 589999996 8899888776654444456666555555444 2334445566778889999
Q ss_pred HHhcCCc-cccCCCC-cc--cccccccCCCCCceEEeecCccH---HHHHHHHHhCCEEeecCCCC--------------
Q 012785 368 VQKSGLF-SVPELPS-QF--CTFLGRAFEPQPAFAWLKCEQEI---EDCESFLKGNKILTRSGKHF-------------- 426 (456)
Q Consensus 368 L~~~~~~-~~~~~~g-~~--~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~l~~~gI~v~pg~~f-------------- 426 (456)
|++++.+ .+..|.- .. .....+.....++++++.+++.. ..+...++..++.+..|+.+
T Consensus 328 L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~ 407 (445)
T 1qgn_A 328 LEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDL 407 (445)
T ss_dssp HHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTS
T ss_pred HhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeecccccccccC
Confidence 9987654 2222210 00 00000001124557888886532 33444444457888887654
Q ss_pred --------CCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 427 --------GFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 427 --------g~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|..++.||||++ .|+++.+++.|++++
T Consensus 408 ~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al 442 (445)
T 1qgn_A 408 SQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQAL 442 (445)
T ss_dssp CHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHH
Confidence 223589999996 567899999998876
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=232.13 Aligned_cols=279 Identities=14% Similarity=0.099 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc----CCCCCCCcEEEEeCCCCCChhhhhhh---cCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----SQDASEPISVVSAAPYYSSYPSITDC---VKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----~~gd~~~~~Vlv~~P~y~~~~~~~~~---~g~~~ 215 (456)
.+++++++++++. ++++|++|+|+++++.++++++. ++||. +|+++.++|+.+...+.. .|+++
T Consensus 66 ~~l~~~la~~~~~------~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~---~Vl~~~~~~~~~~~~~~~~~~~g~~~ 136 (400)
T 3vax_A 66 ERAREYLASTVSA------EPDELIFTSGATESNNIALLGLAPYGERTGRR---HIITSAIEHKAVLEPLEHLAGRGFEV 136 (400)
T ss_dssp HHHHHHHHHHTTC------CGGGEEEESCHHHHHHHHHHTTHHHHHHHTCC---EEEEETTSCHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHcCC------CCCcEEEeCCHHHHHHHHHHHHHHhhccCCCC---EEEECccccHhHHHHHHHHHhcCCeE
Confidence 5677777777653 35799999999999999999987 77762 699999999987666554 58888
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLML 281 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i 281 (456)
+.++.| .+.++. .+++++++++||||||.+++ ++|+++|+++|+|++|.......-.... .++++
T Consensus 137 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~ 215 (400)
T 3vax_A 137 DFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMIS 215 (400)
T ss_dssp EEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEE
T ss_pred EEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEE
Confidence 877754 444443 36789999999999999987 4899999999999999853221111122 67999
Q ss_pred ecCccccCCCCceEEEEE-EeCHHHH---HHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 282 FTVSKSTGHAGTRIGWAL-VKDMEVA---KKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~-~~~~~~~---~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
+|+||.+|.+| +|+++ ++++++. ..+.... .......+...+.++.++++.+ .+.+
T Consensus 216 ~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~ 282 (400)
T 3vax_A 216 ISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF-----------EAEH 282 (400)
T ss_dssp EETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-----------HHSH
T ss_pred EeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH-----------HhhH
Confidence 99999877655 67777 7642111 1111111 1224455667777676777632 3457
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC-
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~- 428 (456)
++.+++++++++.+.+.|+ .+++.+..+.+.. .++++++.++. +.+.+.+.|+ +||.+++|..|..
T Consensus 283 ~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~ 350 (400)
T 3vax_A 283 AQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHV----------VPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSA 350 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSB----------CTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccC----------CCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCC
Confidence 8889999999999999998 6666665554321 12356777654 5677888888 9999999976632
Q ss_pred -------------C----CCeEEEEe-cC--ChhHHHHHHHHHHhhhC
Q 012785 429 -------------S----PKYVRISM-LD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 429 -------------~----~~~iRis~-~~--~~e~i~~~l~~L~~~l~ 456 (456)
. .+++||++ .. +++++++++++|+++++
T Consensus 351 ~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 351 SFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp EECCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred CCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 1 48999999 63 78999999999998763
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-26 Score=222.67 Aligned_cols=307 Identities=11% Similarity=-0.020 Sum_probs=201.7
Q ss_pred CeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHH
Q 012785 95 RIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~ 174 (456)
..+.++.++.++..++.+.++.. +.... ..|++..+ ..+|+++++++++. +..+ +++|+++
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~-----~~~~~-~~~~~~~~-----~~~l~~~la~~~~~-------~~~i-~~~~g~~ 74 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNID-----DNLES-DIYGNGAV-----IEDFETKIAKILGK-------QSAV-FFPSGTM 74 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSC-----TTCBC-CBTTBSHH-----HHHHHHHHHHHHTC-------SEEE-EESCHHH
T ss_pred chhhcCCCccccCCCHHHHHHHH-----hhccc-CcccCCHH-----HHHHHHHHHHHhCC-------CcEE-EeCCHHH
Confidence 44667777766655554443322 11111 23444444 48999999999863 2344 4577789
Q ss_pred HHHHHHHHhcCCCCCCCcE-EE-EeCCCCCChhh---hhhhcCCeEeeecc-----Ccccccc--CCCeEEEEcCCCCCC
Q 012785 175 LFQAALYALSSQDASEPIS-VV-SAAPYYSSYPS---ITDCVKSRLYKWAG-----DAKRFNK--DGPYIELVTSPNNPD 242 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~-Vl-v~~P~y~~~~~---~~~~~g~~~~~~~~-----d~~~l~~--~~~~~i~v~~P~NPt 242 (456)
++.++++++..+|| + |+ ++.++|..... .....|.+++.++. |.+.++. .++++|++++||||+
T Consensus 75 a~~~a~~~~~~~g~----~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v~~~~p~n~~ 150 (359)
T 3pj0_A 75 AQQIALRIWADRKE----NRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTANQLLTIDDIKSLREPVSSVLIELPQREI 150 (359)
T ss_dssp HHHHHHHHHHHHHT----CCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCTTSCCCHHHHHTCSSCCSEEEEESSBGGG
T ss_pred HHHHHHHHHHhcCC----CcEEEEeccceeeehhcchHHHhcCceEEecCCcCCCcCHHHHHhccCCceEEEEEecccCC
Confidence 99999999988887 5 44 44454332221 22456888887654 4555543 467899999999998
Q ss_pred -cccch--------HHhhhcCcEEEeeecCCCCC-----CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 243 -GSVRQ--------SVVNRSGGILVHDLAYYWPQ-----YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 243 -G~~~~--------~l~~~~~~~iI~De~y~~~~-----~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
|.+++ ++|+++|+++|+|++|.+.. ..........++++.||||.++.++ . ||++.+ ++++++
T Consensus 151 ~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~~-~~l~~~ 227 (359)
T 3pj0_A 151 GGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA-G-AILAGN-DDFVQE 227 (359)
T ss_dssp TSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS-C-EEEEEC-HHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc-e-EEEECC-HHHHHH
Confidence 68876 27889999999999986421 1111001233567789999987553 2 777775 999999
Q ss_pred HHHHHhhccCcC--ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCCcccc
Q 012785 309 MTKYIELNTIGV--SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPSQFCT 385 (456)
Q Consensus 309 l~~~~~~~~~~~--s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~ 385 (456)
++..+.....+. ....+.++...++ ++.+ ..+.++++++.+.+.|++++++.+. .+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~a~~~~l~--------------~~~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--- 289 (359)
T 3pj0_A 228 AKIWKRRYGGDLISLYPYILSADYYFE--------------KRIG-KMAEYFEAAKGLAERFNSCSGVKTVPEVPVS--- 289 (359)
T ss_dssp HHHHHHHTTCCCSCCHHHHHHHHHHHH--------------HHGG-GHHHHHHHHHHHHHHHHTSTTEEEESSSCSS---
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHH--------------HHHH-HhHHHHHHHHHHHHHHhhCCCceeeccCCcc---
Confidence 987654333222 2333333334443 1222 2334678888999999988656553 33333
Q ss_pred cccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEec-----CChhHHHHHHHHHHhhh
Q 012785 386 FLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISML-----DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 386 ~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~-----~~~e~i~~~l~~L~~~l 455 (456)
+|+|+.++. +.+.+.+.|.++||.++||..|+. +.+++|+++. .+.+++++++++|++.+
T Consensus 290 ----------~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 290 ----------NMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp ----------SEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ----------eEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 378887753 356788889999999999988863 4678999875 37899999999998864
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=223.82 Aligned_cols=280 Identities=12% Similarity=-0.007 Sum_probs=190.2
Q ss_pred ccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--
Q 012785 129 SYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS-- 206 (456)
Q Consensus 129 ~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~-- 206 (456)
..|++..+ ..+|+++++++++. +..+++ +|+++++.++++++..+||.. .|+++.++|.....
T Consensus 41 ~~y~~~~~-----~~~l~~~la~~~~~-------~~~i~~-~~G~~a~~~al~~~~~~gd~~--~vi~~~~~~~~~~~~~ 105 (357)
T 3lws_A 41 DQYGTGAI-----IEPFEQKFADVLGM-------DDAVFF-PSGTMAQQVALRIWSDETDNR--TVAYHPLCHLEIHEQD 105 (357)
T ss_dssp EETTEETT-----HHHHHHHHHHHHTC-------SEEEEE-SCHHHHHHHHHHHHHHHHTCC--EEEECTTCHHHHSSTT
T ss_pred ccccCChH-----HHHHHHHHHHHhCC-------CcEEEe-cCcHHHHHHHHHHHhhcCCCc--EEEecccceeeeeccc
Confidence 35765455 48999999999863 334555 666789999999998887610 34444444333222
Q ss_pred -hhhhcCCeEeeecc-----CccccccC-CCeEEEEcCCCCCC-cccch--------HHhhhcCcEEEeeecCCC-----
Q 012785 207 -ITDCVKSRLYKWAG-----DAKRFNKD-GPYIELVTSPNNPD-GSVRQ--------SVVNRSGGILVHDLAYYW----- 265 (456)
Q Consensus 207 -~~~~~g~~~~~~~~-----d~~~l~~~-~~~~i~v~~P~NPt-G~~~~--------~l~~~~~~~iI~De~y~~----- 265 (456)
.....|++++.++. |.+.++.. +++++++++||||| |.+++ ++|+++|+++|+|++|.+
T Consensus 106 ~~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~ 185 (357)
T 3lws_A 106 GLKELHPIETILVGAADRLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPY 185 (357)
T ss_dssp HHHHHSSCEEEECSCTTSCCCHHHHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH
T ss_pred hhhhccCcEEEEecCCCCCcCHHHHhcCcCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhh
Confidence 34556888877653 55555432 47899999999998 98876 278899999999999862
Q ss_pred --CCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc--CChHHHHHHHHHHHhhhCCCCC
Q 012785 266 --PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG--VSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 266 --~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~--~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
.....+. ....+++.|+||.++.++. ||++.+ +++++.+.+.+.....+ .....+.++...|+.
T Consensus 186 ~~~~~~~~~--~~~d~~~~s~sK~~~~~~g--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 253 (357)
T 3lws_A 186 YEKTAAEIA--GLFDSIYISFYKGLGGIAG--AILAGP-AAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL------- 253 (357)
T ss_dssp HTCCHHHHH--TTSSEEEEESSSTTCCSSC--EEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH-------
T ss_pred cCCChHHHH--hcCCEEEEeccccCCCCce--EEEEcC-HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH-------
Confidence 1111111 1234568999999932432 999985 99999988765433322 234444444455542
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCCcccccccccCCCCCceEEeecCcc----HHHHHHHHHhC
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV-PELPSQFCTFLGRAFEPQPAFAWLKCEQE----IEDCESFLKGN 416 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~l~~~ 416 (456)
+.+++ +.+.++++.+.+.|++++++.+ ..+.++ +|+|++++.. .+.+.+.|+++
T Consensus 254 -------~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (357)
T 3lws_A 254 -------RKDRM-GQYYEQAKQLAEQFNALPGVHTTPEVPVS-------------NMFHLHFDGQAADISPKLEQVQEET 312 (357)
T ss_dssp -------HTTCH-HHHHHHHHHHHHHHHTSTTEEEESSSCSS-------------SEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred -------HHHHH-HHHHHHHHHHHHHHHhCCCCeeccCCCcc-------------eEEEEEecCChHHHHHHHHHHHHhc
Confidence 22222 3356778889999998866665 334443 3899998642 46778889999
Q ss_pred CEEeecCCCCCCCCCeEEEEec-----CChhHHHHHHHHHHhhhC
Q 012785 417 KILTRSGKHFGFSPKYVRISML-----DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~~-----~~~e~i~~~l~~L~~~l~ 456 (456)
||.++||..|+.+..++|+++. .+++++++++++|++.++
T Consensus 313 Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al~ 357 (357)
T 3lws_A 313 GLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAFS 357 (357)
T ss_dssp CEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC-
T ss_pred CeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhcC
Confidence 9999999777644559999975 378899999999998764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=221.63 Aligned_cols=282 Identities=14% Similarity=0.185 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
..++++.++++++. ++.+++++| ++++..++.++.++|| +|++++|+|+.+...+ ...|.++..
T Consensus 67 ~~~l~~~la~~~g~-------~~~i~~~sG-~~a~~~~l~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (398)
T 1gc0_A 67 LNLLEARMASLEGG-------EAGLALASG-MGAITSTLWTLLRPGD----EVLLGNTLYGCTFAFLHHGIGEFGVKLRH 134 (398)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSH-HHHHHHHHHHHCCTTC----EEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCH-HHHHHHHHHHHhcCCC----EEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 36888889988863 345555555 7999999999999999 9999999999987765 667888887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|....+ .++ ..+.++++.|+||.
T Consensus 135 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~--~~~~d~~~~S~sK~ 212 (398)
T 1gc0_A 135 VDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL--ELGADLVVHSATKY 212 (398)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTT
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCch--hhCceEEEECCccc
Confidence 765 4555543 36789999999999999987 489999999999999984321 122 24578999999999
Q ss_pred cCCCCceE-EEEEEeCHHHHH-HHHHHHhh-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRI-GWALVKDMEVAK-KMTKYIEL-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~Ri-G~l~~~~~~~~~-~l~~~~~~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++.+|.|+ ||++++ ++.++ .+...... .+.+.+++.+.++.+.++ .+....+...++.+.+
T Consensus 213 ~~~~~~~~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~l 276 (398)
T 1gc0_A 213 LSGHGDITAGIVVGS-QALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK---------------TLNLRMDRHCANAQVL 276 (398)
T ss_dssp TTCSSSCCCEEEEEC-HHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEEEEC-hHHHHHHHHHHhhccCCCCCCHHHHHHHHhccc---------------hHHHHHHHHHHHHHHH
Confidence 99999998 999996 66555 56655544 455678888887777665 2334556667777888
Q ss_pred HHHHHhcCCccccCCC-----CcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec---CCC-----------
Q 012785 365 RMAVQKSGLFSVPELP-----SQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS---GKH----------- 425 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p---g~~----------- 425 (456)
.+.|++++.+.....+ .++ ....+.....++++.+++++..+.+.+.+.+.||.++. |+.
T Consensus 277 ~~~L~~~~~v~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~ 355 (398)
T 1gc0_A 277 AEFLARQPQVELIHYPGLASFPQY-TLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMT 355 (398)
T ss_dssp HHHHHTCTTEEEEEEC-----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTT
T ss_pred HHHHhcCCCeeEEECCCCCCCcCH-HHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCCCcceeeecccccc
Confidence 8888876433211000 000 00000011345677778865556788888899988876 422
Q ss_pred -----------CCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 426 -----------FGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 426 -----------fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.|..++.||||++. ++++++.+.+.|+++
T Consensus 356 ~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 356 HSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp TSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 11225899999976 567788888877764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=231.84 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--------CCCCCCCcEEEEeCCCCCCh----------
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--------SQDASEPISVVSAAPYYSSY---------- 204 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------~~gd~~~~~Vlv~~P~y~~~---------- 204 (456)
.++|++++++++. ++++|++|+|+++++++++.++. ++|| +|++++|+|+.+
T Consensus 64 ~~l~~~la~~~g~------~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd----~vl~~~p~y~~~~~i~~~~~~h 133 (432)
T 3a9z_A 64 NTARASLAKMIGG------KPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGR----TVDQISPEEGTRPHFITCTVEH 133 (432)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEETTCC
T ss_pred HHHHHHHHHHcCC------CcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCc----cccccccccccCCeEEEecCcc
Confidence 5899999998863 35689999999999999999886 5888 999999999986
Q ss_pred -------hhhhhhcCCeEeeeccC-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcC--------
Q 012785 205 -------PSITDCVKSRLYKWAGD-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSG-------- 254 (456)
Q Consensus 205 -------~~~~~~~g~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~-------- 254 (456)
...++..|.+++.++.+ .+.++. .++++|++++||||||.+++ ++|++++
T Consensus 134 ~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~ 213 (432)
T 3a9z_A 134 DSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGL 213 (432)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccC
Confidence 23344568888877654 333432 26789999999999999988 3788988
Q ss_pred --cEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHH-HHHHHHH-------HhhccCcCChH
Q 012785 255 --GILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV-AKKMTKY-------IELNTIGVSKD 323 (456)
Q Consensus 255 --~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~-~~~l~~~-------~~~~~~~~s~~ 323 (456)
+++|+||+|.... .++. ...+.+++++|+||.+| .|+||++++ +++ ...+... ......+.+..
T Consensus 214 ~~~~livDea~~~~~-~~~~~~~~~~d~~~~s~~K~~g---~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (432)
T 3a9z_A 214 PRVLVHTDAAQALGK-RRVDVEDLGVDFLTIVGHKFYG---PRIGALYVR-GVGKLTPLYPMLFGGGQERNFRPGTENTP 288 (432)
T ss_dssp CCCEEEEECTTTTTT-SCCCHHHHCCSEEEEEGGGTTC---CSCEEEEET-TBTTTBCCCCSCCSSCGGGGTSCSCCCHH
T ss_pred CceEEEEEchhhhCC-cccChhhcCCCEEEEehhHhcC---CcceEEEEc-cccccCCcCceeecCCccccccCCCcCHH
Confidence 9999999997532 2221 11134578999999775 469999997 544 2222211 12223556778
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc--CCCCcccccccccCCCCCceEEee
Q 012785 324 SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP--ELPSQFCTFLGRAFEPQPAFAWLK 401 (456)
Q Consensus 324 ~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~g~~~~~~~~~~~~~~~f~~~~ 401 (456)
.+.++.++++.+ ++++++.+++++++++.+.+.|+++.++.+. .+..+. . ..+..+++.
T Consensus 289 ~~~a~~aal~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~-----~---~~~~~~~~~ 349 (432)
T 3a9z_A 289 MIAGLGKAADLV-----------SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGV-----E---RLPNTCNFS 349 (432)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTC-----C---BCTTEEEEE
T ss_pred HHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcc-----c---CCCCEEEEE
Confidence 887777777732 3467888999999999999999875322221 221000 0 011134444
Q ss_pred cCc---cHHHHHHHHHhCCEEeecCCCCC---------------C----CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 402 CEQ---EIEDCESFLKGNKILTRSGKHFG---------------F----SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 402 ~~~---~~~~~~~~l~~~gI~v~pg~~fg---------------~----~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++. +.+.+.+.+ .+|.+.+|..|. . ..+++||++.. +++++++++++|++++
T Consensus 350 ~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~ 425 (432)
T 3a9z_A 350 IQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAV 425 (432)
T ss_dssp ECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 432 344444444 478888876552 1 13799999975 7999999999999875
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=220.37 Aligned_cols=306 Identities=9% Similarity=-0.006 Sum_probs=208.0
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEccCH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVGTGS 172 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~ 172 (456)
+.+|+|+.+.+..+ ++.+.+... ... ..|....| ..++++++++++.. +| .++++|++|+|+
T Consensus 13 p~~i~l~~~~~~~~-~~~v~~a~~-----~~~---~~~~~~~g-----~~~~~~~~~~~l~~~~g---~~~~~v~~~~g~ 75 (359)
T 1svv_A 13 PKPYSFVNDYSVGM-HPKILDLMA-----RDN---MTQHAGYG-----QDSHCAKAARLIGELLE---RPDADVHFISGG 75 (359)
T ss_dssp --CEECSCSCSSCC-CHHHHHHHH-----HHT---TCCCCSTT-----CSHHHHHHHHHHHHHHT---CTTSEEEEESCH
T ss_pred CeeEEecCCCcCCC-CHHHHHHHH-----HHH---hhcccccc-----ccHHHHHHHHHHHHHhC---CCCccEEEeCCc
Confidence 45799998776633 333433211 111 13555556 47788888888754 45 235789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--hhhhcCCeEeeeccC-----cccccc----C------CCeEEEE
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPS--ITDCVKSRLYKWAGD-----AKRFNK----D------GPYIELV 235 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~--~~~~~g~~~~~~~~d-----~~~l~~----~------~~~~i~v 235 (456)
++++..+++++.++|| +|++++|+|+.+.. .++..|.+++.++.| .+.++. . +++++++
T Consensus 76 t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~ 151 (359)
T 1svv_A 76 TQTNLIACSLALRPWE----AVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYI 151 (359)
T ss_dssp HHHHHHHHHHHCCTTE----EEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred hHHHHHHHHHHhCCCC----EEEEcccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence 9999999999999999 99999999999888 478889998877754 344432 2 2789999
Q ss_pred cCCCCCCcccch--------HHhhhcCcEEEeeecCCCC--CCCCCCCC-----CCCcEEEecCccccCCCCceEEEEEE
Q 012785 236 TSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWP--QYTSITYP-----ADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 236 ~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~--~~~~~~~~-----~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
++| ||||.+++ ++|+++|+++|+||+|.+. ...+.... ...+++..|.+|..+ + ..+|++++
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~-~-~~~g~l~~ 228 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-M-FGEALIIL 228 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-S-SCEEEEEC
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC-C-CceEEEEE
Confidence 998 79999976 2789999999999999421 11122111 123588899999643 3 56899998
Q ss_pred eCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Q 012785 301 KDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE 378 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 378 (456)
+ +++++.+...... .....+......+.++++ +..+++.+++++++++.+.+.| +.+++.+..
T Consensus 229 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~ 293 (359)
T 1svv_A 229 N-DALKPNARHLIKQRGALMAKGWLLGIQFEVLMK-------------DNLFFELGAHSNKMAAILKAGL-EACGIRLAW 293 (359)
T ss_dssp S-GGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS-------------TTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSS
T ss_pred c-ccHHHHHHHHHhcCCcccccchhhHHHHHHHHh-------------hhhHHHHHHHHHHHHHHHHHHh-ccCCeEEcc
Confidence 6 8887777665321 111222222222333343 2345778889999999999999 455566665
Q ss_pred CCCcccccccccCCCCCceEEeecCccHHHHHHHHHhC-CEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 379 LPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGN-KILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~-gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+.+++ |+|++++ +.+.+.|.++ ||.+.+.. ...++++||+++ .+++++++++++|++++
T Consensus 294 ~~~~~-------------~~~~~~~---~~~~~~l~~~~gi~v~~~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 294 PSASN-------------QLFPILE---NTMIAELNNDFDMYTVEPL--KDGTCIMRLCTSWATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp CCSSS-------------EECBEEE---HHHHHHHTTTEECEEEEEE--TTTEEEEEEECCTTCCHHHHHHHHHHHHHC-
T ss_pred CCccc-------------eEEEEcC---HHHHHHHHHhcCEEEEecc--cCCCceEEEEccCcCCHHHHHHHHHHHHHHH
Confidence 55555 7888775 3566666666 99993211 124679999875 38999999999999876
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 356 ~ 356 (359)
T 1svv_A 356 A 356 (359)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=220.38 Aligned_cols=278 Identities=12% Similarity=0.036 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHH-hcCccCCCc-e-EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEee
Q 012785 143 PEFAKEVVRLHKV-VGNAITENH-H-IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~-~-I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~ 217 (456)
.++++++.+.+.. .|. +++ + +++|+|+++++++++.+++++|| +|++.+|.+.. +...++..| +++.
T Consensus 48 ~~~~~~~~~~la~~~g~---~~~~~~i~~t~g~t~a~~~~~~~l~~~gd----~vl~~~~~~~~~~~~~~~~~~g-~~~~ 119 (362)
T 2c0r_A 48 EAVHNEAQARLLALLGN---PTGYKVLFIQGGASTQFAMIPMNFLKEGQ----TANYVMTGSWASKALKEAKLIG-DTHV 119 (362)
T ss_dssp HHHHHHHHHHHHHHTTC---CSSEEEEEESSHHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHHHS-CEEE
T ss_pred HHHHHHHHHHHHHHhCC---CCCcEEEEECCCchHHHHHHHHhcCCCCC----eEEEEecCcHhHHHHHHHHHhC-CeEE
Confidence 3445555555532 332 232 5 57889999999999999999999 99888765443 235667778 8776
Q ss_pred eccC----------ccccc-cCCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc
Q 012785 218 WAGD----------AKRFN-KDGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 218 ~~~d----------~~~l~-~~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK 286 (456)
++.+ .+.++ ..++++|++++|+||||.+++++.+-+|+++|+|++|..... ++ ...+.+++++|+||
T Consensus 120 v~~~~~~~~~~~~~~~~~~i~~~t~~v~~~~~~n~tG~~~~~l~~i~~~~vivD~a~~~~~~-~~-~~~~~d~~~~s~~K 197 (362)
T 2c0r_A 120 AASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSR-PF-DLNQFGLVYAGAQK 197 (362)
T ss_dssp EEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSS-CC-CGGGCSEEEEETTT
T ss_pred EecccccccccCCCHHHcccCCCcCEEEEeCCcCccceecccccccCCCEEEEEChhhccCC-cc-chhHCcEEEEeccc
Confidence 6543 11221 236789999999999999866543338999999999985322 12 11223689999999
Q ss_pred ccCCCCceEEEEEEeCHHHHHHHHHH------------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEVAKKMTKY------------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~~~~l~~~------------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
.+|++| +||++++ +++++.+.+. ......+++...|.++.++|+.+.+ ...++..+
T Consensus 198 ~~g~~G--~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~---------~~~~~~~~ 265 (362)
T 2c0r_A 198 NLGPSG--VTVVIVR-EDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEE---------RGGLEGVQ 265 (362)
T ss_dssp TTCCSS--CEEEEEE-GGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH---------TTHHHHHH
T ss_pred cccCcC--cEEEEEc-HHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHH---------hCCHHHHH
Confidence 999888 9999997 7776555431 1123457788889998888874321 11578889
Q ss_pred HHHHHHHHHHHHHHHhcCCc-cccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCC
Q 012785 355 HQMSTRWKQLRMAVQKSGLF-SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPK 431 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~~~~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~ 431 (456)
++++++++.+.+.|++++.+ .+..+.. . ..+.++|+.++. +...+.+.|.++||.+.||..| .+
T Consensus 266 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~---~~ 332 (362)
T 2c0r_A 266 QANRKKASLIYDAIDQSGGFYRGCVDVD-S---------RSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRS---VG 332 (362)
T ss_dssp HHHHHHHHHHHHHHHTSTTSSEESSCGG-G---------BCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT---TC
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCChH-H---------cCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCC---CC
Confidence 99999999999999987633 4322110 0 112257888764 4567778899999999998766 45
Q ss_pred eEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 432 YVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++|||++. ++|+++++++.|++++
T Consensus 333 ~iRis~~~~~~~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 333 GLRASIYNAVPYESCEALVQFMEHFK 358 (362)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 79999974 7899999999998875
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=217.93 Aligned_cols=282 Identities=16% Similarity=0.191 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
..+|+++++++++. + ++++++++++++.+++.++.++|| +|++++|+|+.+... ++..|.++..
T Consensus 61 ~~~l~~~la~~~g~-------~-~~i~~~sG~~ai~~~~~~~~~~gd----~vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 128 (389)
T 3acz_A 61 VEQFEEMVCSIEGA-------A-GSAAFGSGMGAISSSTLAFLQKGD----HLIAGDTLYGCTVSLFTHWLPRFGIEVDL 128 (389)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESSHHHHHHHHHTTTCCTTC----EEEEESSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC-------C-eEEEeCCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHHcCCEEEE
Confidence 36899999999863 2 455555567999999999999999 999999999987665 5778999888
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+.. .++ ..+.+++++|+||.
T Consensus 129 v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~--~~~~di~~~S~sK~ 206 (389)
T 3acz_A 129 IDTSDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPL--ELGADIALHSVSKY 206 (389)
T ss_dssp ECTTCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG--GTTCSEEEEETTTT
T ss_pred ECCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCcc--ccCCeEEEECChhh
Confidence 775 5555543 36789999999999999987 489999999999999986432 233 24678999999999
Q ss_pred cCCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++.+|.|+ ||+++++++++++++........+.++..+.++...|+. +....+...++.+.+.+
T Consensus 207 ~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---------------l~~r~~~~~~~~~~l~~ 271 (389)
T 3acz_A 207 INGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT---------------LPIRMQIHMENGLKVAK 271 (389)
T ss_dssp TTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHH
T ss_pred ccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH---------------HHHHHHHHHHHHHHHHH
Confidence 99999998 999997338988888776545566778777777776651 22334455566777777
Q ss_pred HHHhcCCccccCCCC-----cccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec---C------CCC------
Q 012785 367 AVQKSGLFSVPELPS-----QFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS---G------KHF------ 426 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p---g------~~f------ 426 (456)
.|++++.+.....++ ++ ....+.....++++.+.+++ .+.+.+.+.+.||.+++ | ..+
T Consensus 272 ~l~~~~~v~~~~~~~L~~~~~~-~~~~~~~~g~g~~~~~~l~~-~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~ 349 (389)
T 3acz_A 272 FLEQHEKIVKVNHPGLESFPGH-DIAKKQMTGYGSTFLFEMKS-FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHA 349 (389)
T ss_dssp HHHHCTTEEEEECTTSTTSTTH-HHHHHHCSSCCSEEEEEESS-HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTS
T ss_pred HHHcCCCeeEEECCCCCCCccH-HHHHhhCCCCCeEEEEEECC-HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccc
Confidence 887754221111000 00 00000111235577778865 66788888899998887 4 222
Q ss_pred ----------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 427 ----------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 ----------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|..++.||+|++. ++.+++++.|.+.++
T Consensus 350 ~~~~~~~~~~g~~~~~iRlsvg~--~~~~~li~~l~~al~ 387 (389)
T 3acz_A 350 AVPENIMRKQGITPELVRISVGI--ENVDDIIADLKQALE 387 (389)
T ss_dssp SSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHT
T ss_pred cCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHh
Confidence 2236899999854 366677777776653
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=218.14 Aligned_cols=280 Identities=10% Similarity=0.032 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~ 220 (456)
.++++.++++++ .+. +.+.+++|+|++++++++++++.++|| +|++++|+|.... ..+...|.+++.++.
T Consensus 55 ~~~~~~la~~~g---~~~-~~~~i~~~~ggt~al~~~~~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (376)
T 3f0h_A 55 LENEKFMLEYAK---APE-GSKAVFMTCSSTGSMEAVVMNCFTKKD----KVLVIDGGSFGHRFVQLCEIHEIPYVALKL 126 (376)
T ss_dssp HHHHHHHHHHHT---CCT-TCEEEEESSCHHHHHHHHHHHHCCTTC----CEEEEESSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhC---CCC-CceEEEEcCChhHHHHHHHHhccCCCC----eEEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence 344455555543 321 124456699999999999999999999 9999998776644 346667888776554
Q ss_pred ------Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc
Q 012785 221 ------DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 221 ------d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK 286 (456)
|.+.++. .+++++++++||||||.+++ ++|+++|+++|+|++|.......-....+.+++++|+||
T Consensus 127 ~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K 206 (376)
T 3f0h_A 127 EHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQK 206 (376)
T ss_dssp CTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTT
T ss_pred CCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcc
Confidence 4444543 36789999999999999987 489999999999999885332211111235799999999
Q ss_pred ccC-CCCceEEEEEEeCHHHHHHHHHHHh-----------------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 287 STG-HAGTRIGWALVKDMEVAKKMTKYIE-----------------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 287 ~~g-~~G~RiG~l~~~~~~~~~~l~~~~~-----------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
.++ .+| +|+++++ +++++++..... ......+...+.++.+.++.+.+ ..
T Consensus 207 ~l~~~~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~---------~~ 274 (376)
T 3f0h_A 207 VLACPPG--ISVIVLA-PRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKK---------HG 274 (376)
T ss_dssp TTCCCSS--CEEEEEC-HHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH---------TT
T ss_pred cccCCCc--eEEEEEC-HHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHH---------hc
Confidence 998 666 6788886 888888764211 01234444444555555553221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhC-CEEeecCCCCC
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGN-KILTRSGKHFG 427 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~-gI~v~pg~~fg 427 (456)
.+++.+++++++++.+.+.|++++ +.+..+.... ..+.+..-..+.+.+.+.|.++ ||.+++|...
T Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~- 341 (376)
T 3f0h_A 275 GADAEVARIASQAADFRAKIKDLP-FELVSESPAN-----------GVTSVHPTTANAYDIFLKLKDEYGIWICPNGGE- 341 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBBT-----------TEEEEEESSSCHHHHHHHHHHHSSEECEECCGG-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcC-CccCccccCc-----------eEEEEeCCCCCHHHHHHHHHHhCCEEEecCccc-
Confidence 477888899999999999998765 3333222111 0122222122566677777766 9999998432
Q ss_pred CCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 428 FSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 ~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
..++++||++. .+++++++++++|++++
T Consensus 342 ~~~~~lRis~~~~~t~e~i~~~~~~l~~~l 371 (376)
T 3f0h_A 342 MKDTIFRVGHIGALTHEDNTTLVNAFKDLQ 371 (376)
T ss_dssp GTTTCEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 24789999985 38999999999999876
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=223.35 Aligned_cols=274 Identities=12% Similarity=0.084 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc------CCCCCCCcEEE-EeCCCCCChhhhh----hhc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS------SQDASEPISVV-SAAPYYSSYPSIT----DCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~------~~gd~~~~~Vl-v~~P~y~~~~~~~----~~~ 211 (456)
.+++++++++++. ++++|++|+|+++++.+++.++. .+|| +|+ ++.++|+.+...+ +..
T Consensus 74 ~~l~~~la~~~g~------~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd----~vii~~~~~~~~~~~~~~~~~~~~ 143 (416)
T 1qz9_A 74 ERLGNRLATLIGA------RDGEVVVTDTTSINLFKVLSAALRVQATRSPER----RVIVTETSNFPTDLYIAEGLADML 143 (416)
T ss_dssp HHHHHHHHTTTTC------CTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTC----CEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC------CcccEEEeCChhHHHHHHHHhhcccccccCCCC----cEEEEcCCCCCchHHHHHHHHHHh
Confidence 6788888887753 35689999999999999988876 8888 654 4555666544332 233
Q ss_pred --CCeEeeeccCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEE
Q 012785 212 --KSRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLM 280 (456)
Q Consensus 212 --g~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~ 280 (456)
|++++.++. .+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|.... .+.. ...+.+++
T Consensus 144 ~~g~~~~~v~~-~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~-~~~~~~~~~~d~~ 221 (416)
T 1qz9_A 144 QQGYTLRLVDS-PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA-VPVDLHQAGADYA 221 (416)
T ss_dssp CSSCEEEEESS-GGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT-SCCCHHHHTCSEE
T ss_pred cCCceEEEeCc-HHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccC-cCCChhhcCCCEE
Confidence 888888775 455432 36789999999999999987 48999999999999998422 2211 11245799
Q ss_pred EecCccccCCCCceE-EEEEEeCHHHHHHHHHHH-----------------------hhccCcCChHHHHHHHHHHHhhh
Q 012785 281 LFTVSKSTGHAGTRI-GWALVKDMEVAKKMTKYI-----------------------ELNTIGVSKDSQLRAAKVLKVVS 336 (456)
Q Consensus 281 i~S~SK~~g~~G~Ri-G~l~~~~~~~~~~l~~~~-----------------------~~~~~~~s~~~q~~a~~~L~~~~ 336 (456)
++|++|.++ +|.++ ||++++ +++++.+.... .....+.+...+.++.++|+.+.
T Consensus 222 ~~s~~K~l~-~g~~~~g~l~~~-~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (416)
T 1qz9_A 222 IGCTYKYLN-GGPGSQAFVWVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA 299 (416)
T ss_dssp EECSSSTTC-CCTTCCCEEEEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT
T ss_pred EecCcccCC-CCCCCeEEEEEC-HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 999999885 77787 999997 77766554321 11123456677777777777432
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-C--CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHH
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-G--LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFL 413 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l 413 (456)
. +.+++.+++++++++.+.+.|++. + ++.+..+.+.. ..++++|+++++ .+.+.+.|
T Consensus 300 ~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~-~~~l~~~l 359 (416)
T 1qz9_A 300 Q----------TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHA---------KRGSHVSFEHPE-GYAVIQAL 359 (416)
T ss_dssp T----------SCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGG---------GBCSEEEEECTT-HHHHHHHH
T ss_pred h----------cCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHH---------HcCCEEEEecCC-HHHHHHHH
Confidence 2 346778889999999999999885 4 45554443210 012378888874 56677888
Q ss_pred HhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 414 KGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 414 ~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
.++||.+... .++++||+++. +++++++++++|++++
T Consensus 360 ~~~gi~~~~~-----~~~~lRis~~~~~~t~~~i~~~~~~l~~~~ 399 (416)
T 1qz9_A 360 IDRGVIGDYR-----EPRIMRFGFTPLYTTFTEVWDAVQILGEIL 399 (416)
T ss_dssp HTTTEECEEE-----TTTEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcEeccC-----CCCeEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 8999998641 37899999962 8999999999999875
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=226.60 Aligned_cols=270 Identities=11% Similarity=0.049 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---------CCC-CCCCcEEEEeCCCCCChhhhh-hhc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---------SQD-ASEPISVVSAAPYYSSYPSIT-DCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---------~~g-d~~~~~Vlv~~P~y~~~~~~~-~~~ 211 (456)
.+|++.++++++ .++|++|+|++++++.+++++. .+| + +|++.+|+|+++...+ ...
T Consensus 110 ~~l~~~la~~~g--------~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~----~vi~~~~~yhg~~~~~~~~~ 177 (433)
T 1z7d_A 110 GICERYLTNLLG--------YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMA----KIVVCKNNFSGRTLGCISAS 177 (433)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCC----EEEEETTC------------
T ss_pred HHHHHHHHhhcC--------CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCC----eEEEEeCCcCCcchhhhccc
Confidence 566666666652 3689999999999999998764 356 6 9999999999875533 322
Q ss_pred C------------CeEeeecc-Cccccc----cCCCeEEEEcCCCCCCcccc-h--------HHhhhcCcEEEeeecCCC
Q 012785 212 K------------SRLYKWAG-DAKRFN----KDGPYIELVTSPNNPDGSVR-Q--------SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 212 g------------~~~~~~~~-d~~~l~----~~~~~~i~v~~P~NPtG~~~-~--------~l~~~~~~~iI~De~y~~ 265 (456)
| ..+..++. |.+.++ ..++++|+++..+|+||.+. + ++|+++|+++|+||+|.+
T Consensus 178 g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g 257 (433)
T 1z7d_A 178 TTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTG 257 (433)
T ss_dssp --------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccC
Confidence 3 23333332 555553 23566666644467789764 2 389999999999999986
Q ss_pred CCCCCCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 266 PQYTSIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 266 ~~~~~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
..+.+.. ...+...-+.||||.+| +| +|+||++++ +++++.+.......+++.+++++.++.+.|+.+.+.
T Consensus 258 ~g~~g~~~~~~~~~~~~di~t~sK~l~-~G~~~~G~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~--- 332 (433)
T 1z7d_A 258 LGRTGKLLCVHHYNVKPDVILLGKALS-GGHYPISAVLAN-DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINE--- 332 (433)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEECGGGG-TTSSCCEEEEEC-HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHT---
T ss_pred CCcCCcchhhHhcCCCCCEEEECcccc-CCCCCeEEEEEC-HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhc---
Confidence 4333211 11111111338999999 89 999999997 888887765444567889999999999988854321
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCC
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKS-GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNK 417 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~g 417 (456)
...++++++++.+.+.|+++ ..+.... ..++.++|+|+.++. +...+.+.|.++|
T Consensus 333 ----------~~~~~~~~~~~~l~~~L~~l~~~~~~~~-----------~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G 391 (433)
T 1z7d_A 333 ----------KLCENAEKLGGPFLENLKRELKDSKIVR-----------DVRGKGLLCAIEFKNELVNVLDICLKLKENG 391 (433)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHTTCTTEE-----------EEEEETTEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHhCCCeE-----------EEEeeeeEEEEEEccChhHHHHHHHHHHHCC
Confidence 34556677777777777664 1111100 001233478888864 3567888888899
Q ss_pred EEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
|.++|+ +.+++|++++ .+++++++++++|++++
T Consensus 392 v~v~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 426 (433)
T 1z7d_A 392 LITRDV-----HDKTIRLTPPLCITKEQLDECTEIIVKTV 426 (433)
T ss_dssp EECCEE-----TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEecC-----CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 999985 3689999765 48999999999998875
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=221.74 Aligned_cols=311 Identities=13% Similarity=0.025 Sum_probs=208.8
Q ss_pred CCCCeEEecCCCCC--CC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT--MY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..|.+. +. .++.+.++.. ..+.........|+... ..+|++.++++++ .++|++
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~-~~~~~~~~~~~~~~~~~------~~~l~~~la~~~g--------~~~v~~ 138 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALK-SQVDKLTLTSRAFYNNV------LGEYEEYITKLFN--------YHKVLP 138 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHH-HHHTTCSCCCTTSEESS------HHHHHHHHHHHHT--------CSEEEE
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHH-HHHHhcCcccCccCCHH------HHHHHHHHHHhcC--------CCEEEE
Confidence 46678999887543 32 4444443322 11222211111232222 3788888888763 368999
Q ss_pred ccCHHHHHHHHHHHhc---------CCC-CCCCcEEEEeCCCCCChhh-hhhhcC------------CeEeeecc-Cccc
Q 012785 169 GTGSTQLFQAALYALS---------SQD-ASEPISVVSAAPYYSSYPS-ITDCVK------------SRLYKWAG-DAKR 224 (456)
Q Consensus 169 t~G~~~al~~~~~~l~---------~~g-d~~~~~Vlv~~P~y~~~~~-~~~~~g------------~~~~~~~~-d~~~ 224 (456)
++|++++++.+++++. .+| + +|++.+|+|+++.. .....| .+++.++. |.+.
T Consensus 139 ~~sGseA~~~al~~~~~~~~~~~g~~~g~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~ 214 (439)
T 2oat_A 139 MNTGVEAGETACKLARKWGYTVKGIQKYKA----KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPA 214 (439)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCTTCC----EEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHH
T ss_pred eCCHHHHHHHHHHHHHHHhhhccCCCCCCC----eEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHH
Confidence 9999999999999875 345 6 89999999998754 333333 23444432 5555
Q ss_pred ccc----CCCeEEEEcCCCCCCcccc-h--------HHhhhcCcEEEeeecCCCCCCCCCC---CCC--CCcEEEecCcc
Q 012785 225 FNK----DGPYIELVTSPNNPDGSVR-Q--------SVVNRSGGILVHDLAYYWPQYTSIT---YPA--DHDLMLFTVSK 286 (456)
Q Consensus 225 l~~----~~~~~i~v~~P~NPtG~~~-~--------~l~~~~~~~iI~De~y~~~~~~~~~---~~~--~~~i~i~S~SK 286 (456)
++. .++++++++..+|++|.+. + ++|+++|+++|+||+|.+..+.+.. ... ..++ .||||
T Consensus 215 le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di--~t~sK 292 (439)
T 2oat_A 215 LERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDI--VLLGK 292 (439)
T ss_dssp HHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE--EEECG
T ss_pred HHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcE--EEecc
Confidence 542 3456666644467789754 2 3899999999999999864333211 111 1233 39999
Q ss_pred ccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 287 STGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 287 ~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
.++ +| +|+||++++ +++++.+.......+++.+++++.++.+.|+.+.+ +...++++++++.+.
T Consensus 293 ~l~-~G~~~~G~v~~~-~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~-------------~~~~~~~~~~~~~l~ 357 (439)
T 2oat_A 293 ALS-GGLYPVSAVLCD-DDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE-------------ENLAENADKLGIILR 357 (439)
T ss_dssp GGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH-------------TTHHHHHHHHHHHHH
T ss_pred ccc-CCCCCeEEEEEC-HHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHHHH
Confidence 999 79 999999997 88888776554456788999999999988885422 135667888888999
Q ss_pred HHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc----HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--C
Q 012785 366 MAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE----IEDCESFLKGNKILTRSGKHFGFSPKYVRISML--D 439 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~ 439 (456)
+.|++++ +.+.. ..++.++|+|+.++.. ...+.+.|.++||.+.|+ +++++|++++ .
T Consensus 358 ~~L~~l~-~~~~~-----------~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~-----~~~~iRi~~~~~~ 420 (439)
T 2oat_A 358 NELMKLP-SDVVT-----------AVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT-----HGDIIRFAPPLVI 420 (439)
T ss_dssp HHHTTSC-TTTEE-----------EEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS-----SSSEEEECCCTTC
T ss_pred HHHHHhc-CCCcE-----------EEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC-----CCCEEEEECccCC
Confidence 9898763 22110 0012334788888643 567888888899999984 3689999765 4
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
+++++++++++|++++
T Consensus 421 t~e~i~~~l~~l~~~l 436 (439)
T 2oat_A 421 KEDELRESIEIINKTI 436 (439)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999999876
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=215.18 Aligned_cols=275 Identities=11% Similarity=0.103 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC-hhhhhhhc--CCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS-YPSITDCV--KSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~-~~~~~~~~--g~~~~~~ 218 (456)
.++++.++++++. . ++++|++ |+|+++++++++++++++| .+.+..+.|.. ....+... |.+++.+
T Consensus 81 ~~~~~~la~~~g~---~--~~~~i~~~t~g~t~al~~~~~~l~~~g-----v~~v~~~~~~~~~~~~~~~~~~g~~~~~v 150 (398)
T 2fyf_A 81 GRVRSGLAELFSL---P--DGYEVILGNGGATAFWDAAAFGLIDKR-----SLHLTYGEFSAKFASAVSKNPFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHTTC---C--TTCEEEEEETCHHHHHHHHHHHTCSSC-----EEEEECSHHHHHHHHHHHHCTTSCCCEEE
T ss_pred HHHHHHHHHHhCC---C--CCceEEEeCCchhHHHHHHHHHhcCCC-----eEEEeCCHHHHHHHHHHHHhCCCCceEEE
Confidence 4566666666642 2 2368998 9999999999999998776 23334443321 12234445 7777666
Q ss_pred ccCcccc-----ccCCCeEEEEcCCCCCCcccch--HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCC
Q 012785 219 AGDAKRF-----NKDGPYIELVTSPNNPDGSVRQ--SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 219 ~~d~~~l-----~~~~~~~i~v~~P~NPtG~~~~--~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 291 (456)
+.| ++. ...++++|++++|+||||.+++ ++++.+|+++|+|++|..... ++. ..+.+++++|+||.+|.+
T Consensus 151 ~~~-~g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~vivD~a~~~~~~-~~~-~~~~di~~~s~sK~~~~~ 227 (398)
T 2fyf_A 151 TSD-PGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDATSGAGGL-PVD-IAETDAYYFAPQKNFASD 227 (398)
T ss_dssp ECC-TTCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTCC-CEEEEECTTTTTTS-CCC-GGGCSEEEECTTSTTCSC
T ss_pred ecC-CCCCCCccccCCCCEEEEeCcCCCcceecchHHhhhhcCCeEEEEeccccCCc-ccC-cccCcEEEEecCcccCCC
Confidence 655 221 1236789999999999999988 366669999999999985432 121 123579999999999977
Q ss_pred CceEEEEEEeCHHHHHHHHHHH---------------------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 292 GTRIGWALVKDMEVAKKMTKYI---------------------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 292 G~RiG~l~~~~~~~~~~l~~~~---------------------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
| ++||++++ +++++++++.. .....+.+...+.++.++|+.+.+ ...+
T Consensus 228 g-g~g~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~---------~g~~ 296 (398)
T 2fyf_A 228 G-GLWLAIMS-PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVG---------NGGL 296 (398)
T ss_dssp S-SEEEEEEC-HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH---------HTSH
T ss_pred C-ceEEEEEC-HHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHH---------ccCH
Confidence 5 69999996 88888775431 112234566677777777763211 1127
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccC--C--CCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPE--L--PSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~--~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~ 424 (456)
++.+++++++++.+.+.|++++++.+.. + .++ .++|++++. +.+.+.+.|.++||.+++|.
T Consensus 297 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~ 363 (398)
T 2fyf_A 297 DWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQ-------------VVGTIDFVDDVDAGTVAKILRANGIVDTEPY 363 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCS-------------SEEEEEECTTSCHHHHHHHHHHTTCBCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCC-------------cEEEEECCCCCCHHHHHHHHHHCCcEEecCc
Confidence 7889999999999999999875555542 2 122 278888853 56678888888899999873
Q ss_pred CCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 425 HFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+ .+++++||++.. +++++++++++|++++
T Consensus 364 ~~-~~~~~iRis~~~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 364 RK-LGRNQLRVAMFPAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp TT-TCSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cc-CCCCEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 22 236899999974 8999999999999875
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=226.20 Aligned_cols=267 Identities=9% Similarity=0.054 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-------CCCCCCcEEEEeCCCCCChhhhhhhcC---
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-------QDASEPISVVSAAPYYSSYPSITDCVK--- 212 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-------~gd~~~~~Vlv~~P~y~~~~~~~~~~g--- 212 (456)
.+|++.++++++. ..++|++|+|++++++.+++++.. +|+. +|++.+|+|+++...+...+
T Consensus 121 ~~L~e~la~~~~~------~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~---~ii~~~~~yhg~~~~~~~~~~~~ 191 (457)
T 3tfu_A 121 ARLAKLLVDITPA------GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAMSICDPH 191 (457)
T ss_dssp HHHHHHHHHHSST------TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC---EEEEETTCCCCSSHHHHTTSCCC
T ss_pred HHHHHHHHHhCCC------CcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc---eEEEEcCCcCCccHHhhcccCCc
Confidence 5666666665531 246899999999999999998864 4442 89999999999876665552
Q ss_pred -------------CeEeeec------cCcccccc------CCCeEEEEcC-CCCCCcccch---------HHhhhcCcEE
Q 012785 213 -------------SRLYKWA------GDAKRFNK------DGPYIELVTS-PNNPDGSVRQ---------SVVNRSGGIL 257 (456)
Q Consensus 213 -------------~~~~~~~------~d~~~l~~------~~~~~i~v~~-P~NPtG~~~~---------~l~~~~~~~i 257 (456)
...++++ .|.+.++. .++++++++. +|||+|.+++ ++|+++|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 1222221 13344432 3567788877 7999998864 3899999999
Q ss_pred EeeecCCCCCCCCCCCC-----CCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-----HhhccCcCChHHHH
Q 012785 258 VHDLAYYWPQYTSITYP-----ADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-----IELNTIGVSKDSQL 326 (456)
Q Consensus 258 I~De~y~~~~~~~~~~~-----~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-----~~~~~~~~s~~~q~ 326 (456)
|+||+|.+..+.+.... ...++ .||||.++ .| +|+||++++ +++++.+... ....+++.+++++.
T Consensus 272 I~DEv~~g~gr~G~~~a~~~~~~~pdi--it~sK~l~-gG~~~lG~v~~~-~~i~~~~~~~~~~~~~~~~t~~~n~~a~a 347 (457)
T 3tfu_A 272 IFDEIATGFGRTGALFAADHAGVSPDI--MCVGKALT-GGYLSLAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACA 347 (457)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSE--EEECGGGG-TTSSCCEEEEEE-HHHHHHHHHSSSCSCCCCCTTTTCHHHHH
T ss_pred EEEcCccCCccccchhHhHhcCCCceE--EEEChhhh-CCCcceEEEEEc-HHHHHHhhccCCCceeEecCCCcCHHHHH
Confidence 99999997544432111 11223 39999987 56 799999997 9999988632 33467899999999
Q ss_pred HHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecC
Q 012785 327 RAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCE 403 (456)
Q Consensus 327 ~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~ 403 (456)
++.+.|+.+.+. ...++++++++.+.+.|+++. .+...+ +.++|+++.++
T Consensus 348 aa~aaL~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr--------------~~G~~~~i~l~ 400 (457)
T 3tfu_A 348 VSVASVELLLGQ-------------DWRTRITELAAGLTAGLDTARALPAVTDVR--------------VCGAIGVIECD 400 (457)
T ss_dssp HHHHHHHHHHTS-------------CHHHHHHHHHHHHHHHHGGGGGSTTEEEEE--------------ECSSCEEEEES
T ss_pred HHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHHhcCCCeeeee--------------cCCeEEEEEEC
Confidence 999999865432 245556666677777776642 222222 23447888885
Q ss_pred c--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 404 Q--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 404 ~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
. +...+.+.|.++||.++|. .+++||+. ..++|++++++++|++++
T Consensus 401 ~~~~~~~~~~~l~~~Gv~v~~~------~~~lRi~p~~~~t~eei~~~l~~L~~~l 450 (457)
T 3tfu_A 401 RPVDLAVATPAALDRGVWLRPF------RNLVYAMPPYICTPAEITQITSAMVEVA 450 (457)
T ss_dssp SCCCHHHHHHHHHHTTEECCCB------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHCCeEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4 3577888888999999983 36899984 349999999999999876
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=215.63 Aligned_cols=283 Identities=16% Similarity=0.127 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~ 217 (456)
..++++.++++++. +++++|+|++++++.++.++.++|| +|+++.|+|+..... ++..|.+++.
T Consensus 58 ~~~l~~~la~~~g~--------~~~~~~~~gt~a~~~al~~l~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~ 125 (412)
T 2cb1_A 58 AKALEERLKALEGA--------LEAVVLASGQAATFAALLALLRPGD----EVVAAKGLFGQTIGLFGQVLSLMGVTVRY 125 (412)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESSHHHHHHHHHHTTCCTTC----EEEEETTCCHHHHHHHHHTTTTTTCEEEE
T ss_pred HHHHHHHHHHHhCC--------CcEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 37888888888852 4899999999999999999999999 999999999875554 4557999998
Q ss_pred eccCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccC
Q 012785 218 WAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTG 289 (456)
Q Consensus 218 ~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g 289 (456)
++.|.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|....+...+...+.+++++|+||.++
T Consensus 126 ~~~~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~ 205 (412)
T 2cb1_A 126 VDPEPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWAS 205 (412)
T ss_dssp ECSSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTT
T ss_pred ECCCHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCccccc
Confidence 8888766653 36789999999999999987 489999999999999986522222223467999999999998
Q ss_pred CCCceEEEEEEeCH---------------------------HHHHHHHHHH-hhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 290 HAGTRIGWALVKDM---------------------------EVAKKMTKYI-ELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 290 ~~G~RiG~l~~~~~---------------------------~~~~~l~~~~-~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
.||.|+||+++.++ ++.+.++... .......++.....+...++
T Consensus 206 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-------- 277 (412)
T 2cb1_A 206 GHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE-------- 277 (412)
T ss_dssp CSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG--------
T ss_pred CCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc--------
Confidence 89999999988642 4455555543 21222345555444444333
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc----ccccccCCCCCceEEeecCccHHHHHHHHHhCC
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC----TFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNK 417 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~----~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~g 417 (456)
.+....++..++.+.+.+.|.+.+.+.....+|... ...++.+...+.++.+.+ ++.+.+.+.+.+.|
T Consensus 278 -------~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~ 349 (412)
T 2cb1_A 278 -------TVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GDLERASRFLGAIR 349 (412)
T ss_dssp -------GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCS
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCC
Confidence 233444556677888889998876655331111000 000000012334667777 46778888999999
Q ss_pred EEeecCC---------CC----------------CCCCCeEEEEecC--ChhHHHHHHHHHHh
Q 012785 418 ILTRSGK---------HF----------------GFSPKYVRISMLD--RDENYNLFVQRLSK 453 (456)
Q Consensus 418 I~v~pg~---------~f----------------g~~~~~iRis~~~--~~e~i~~~l~~L~~ 453 (456)
|.+ .++ .+ |..++.||+|++. ++++++.+++.|++
T Consensus 350 i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 350 LLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred eee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 999 774 22 1126899999975 56788888887765
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=220.54 Aligned_cols=285 Identities=12% Similarity=0.079 Sum_probs=191.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+||+++|++++. ++.|++++| +++++++++ ++++|| +|+++.|+|++... .++..|.+++.
T Consensus 57 ~~~lr~~la~~~g~-------~~~i~~~sG-t~a~~~al~-~~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~ 123 (393)
T 1n8p_A 57 RENLERAVAALENA-------QYGLAFSSG-SATTATILQ-SLPQGS----HAVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESCH-HHHHHHHHH-TSCSSC----EEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCh-HHHHHHHHH-HcCCCC----EEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 37899999999863 245555555 899999999 889999 99999999985443 45667888887
Q ss_pred eccCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhc----CcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 218 WAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS----GGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 218 ~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~----~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
++.+.+.++. .++++|++++||||||.+++ ++|+++ |+++|+|++|....+... ...+.+++++|+|
T Consensus 124 v~~~d~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~-~~~~~di~~~S~s 202 (393)
T 1n8p_A 124 TNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNP-LNFGADIVVHSAT 202 (393)
T ss_dssp ESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCG-GGGTCSEEEEETT
T ss_pred eCCChHHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCH-HHcCCeEEEEECc
Confidence 7763144432 36789999999999999987 488999 999999999985322111 1235789999999
Q ss_pred cccCCCCceE-EEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 286 KSTGHAGTRI-GWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 286 K~~g~~G~Ri-G~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
|.+|.+|+|+ ||++++++++++.+...........++..+.++...++ .+....+...++.+.+
T Consensus 203 K~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~l 267 (393)
T 1n8p_A 203 KYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK---------------TLHLRVRQAALSANKI 267 (393)
T ss_dssp TTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHH
T ss_pred ccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc---------------hHHHHHHHHHHHHHHH
Confidence 9999999999 99998548898988877654455567766666555554 2334455566777778
Q ss_pred HHHHHhcCC-cccc-CCC-Cccc--ccccccCCC-C-CceEEeecCcc---HHHHHHHHHhCCEEeecCCC---------
Q 012785 365 RMAVQKSGL-FSVP-ELP-SQFC--TFLGRAFEP-Q-PAFAWLKCEQE---IEDCESFLKGNKILTRSGKH--------- 425 (456)
Q Consensus 365 ~~~L~~~~~-~~~~-~~~-g~~~--~~~~~~~~~-~-~~f~~~~~~~~---~~~~~~~l~~~gI~v~pg~~--------- 425 (456)
.+.|++.+. +... .|. .+.. ....+.... . ++.+++.+++. .+.+...+...++.+..|+.
T Consensus 268 ~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~ 347 (393)
T 1n8p_A 268 AEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAV 347 (393)
T ss_dssp HHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTT
T ss_pred HHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcceeecccc
Confidence 888877643 2211 110 0000 000000011 2 45788888643 23344444445555554421
Q ss_pred -C------------CCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 426 -F------------GFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 -f------------g~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+ |..++.||+|++. ++++++.+.+.|+++.
T Consensus 348 ~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 348 MTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp TTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 1 2235799999986 5677888888887653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=224.56 Aligned_cols=275 Identities=9% Similarity=-0.019 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC----CC----CCCCcEEEEeCCCCCChhhhhhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS----QD----ASEPISVVSAAPYYSSYPSITDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~----~g----d~~~~~Vlv~~P~y~~~~~~~~~~g~~ 214 (456)
.+.++++++++...- +. ..++|++|+|++++++.+++++.. +| + +|++.+|+|+++...+...+..
T Consensus 86 ~~~~~~la~~l~~~~-~~-~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~----~vi~~~~~yhg~~~~~~~~~~~ 159 (448)
T 3dod_A 86 NVPATQLAETLIDIS-PK-KLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ----KFIAMKNGYHGDTIGAVSVGSI 159 (448)
T ss_dssp EHHHHHHHHHHHHHS-CT-TEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEEC----------------
T ss_pred CHHHHHHHHHHHHhC-CC-CCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCC----EEEEECCCCCCccHHHHHhcCC
Confidence 566777777764321 11 236999999999999999998865 44 6 9999999999887655544321
Q ss_pred ---------------Eeeecc---------------Ccccccc------CCCeEEEEcCCC-CCCcccch---------H
Q 012785 215 ---------------LYKWAG---------------DAKRFNK------DGPYIELVTSPN-NPDGSVRQ---------S 248 (456)
Q Consensus 215 ---------------~~~~~~---------------d~~~l~~------~~~~~i~v~~P~-NPtG~~~~---------~ 248 (456)
.++++. |.+.++. .++++|+++.++ ||+|...+ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~ 239 (448)
T 3dod_A 160 ELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRE 239 (448)
T ss_dssp -------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHH
T ss_pred ccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHH
Confidence 111111 1333432 245666665556 88886643 3
Q ss_pred HhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHH-------HHhhcc
Q 012785 249 VVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTK-------YIELNT 317 (456)
Q Consensus 249 l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~-------~~~~~~ 317 (456)
+|+++|+++|+||+|.+..+.+.. ...+...-+.||||.++ +| +|+||++++ +++++.+.+ .....+
T Consensus 240 l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~-~G~~~ig~v~~~-~~~~~~~~~~~~~~~~~~~~~t 317 (448)
T 3dod_A 240 LCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGIT-GGYLPIAVTFAT-EDIYKAFYDDYENLKTFFHGHS 317 (448)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG-TTSSCCEEEEEE-HHHHHTTCSCGGGCCCCCCCCT
T ss_pred HHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEeccccc-CCcCceEEEEEC-HHHHHHhhhccccCCcccccCC
Confidence 899999999999999965433211 11122222557999998 69 599999997 999988876 444568
Q ss_pred CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCce
Q 012785 318 IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF 397 (456)
Q Consensus 318 ~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f 397 (456)
++.++++|.++.+.|+.+.+ ++++++.++..+..++.+.+ +..++.+...++.| .|
T Consensus 318 ~~~~~~~~aaa~aal~~~~~---------~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g--------------~~ 373 (448)
T 3dod_A 318 YTGNQLGCAVALENLALFES---------ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLG--------------FM 373 (448)
T ss_dssp TTTCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEET--------------TE
T ss_pred CCcCHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeee--------------EE
Confidence 89999999999999985432 23455555555555555555 54444333332233 36
Q ss_pred EEeecCcc-------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 398 AWLKCEQE-------------IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 398 ~~~~~~~~-------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
+|+.++.+ ...+.+.+.++||.++|+ .+++||+ +..+++++++++++|++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l 440 (448)
T 3dod_A 374 CGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL------GDVIAFLPPLASTAEELSEMVAIMKQAI 440 (448)
T ss_dssp EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 78877532 256778888899999985 3799995 4459999999999999876
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-26 Score=229.01 Aligned_cols=308 Identities=12% Similarity=0.005 Sum_probs=201.9
Q ss_pred CCCCeEEecCCCC--CCC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDP--TMY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..|.. .+. .++.+.++.. ..+..... .+|++.. ..+|++++++++. ..++|++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~-~~~~~~~~--~~~~~~~------~~~l~~~la~~~~-------~~~~v~~ 114 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALK-AVAERGTS--FGAPTEI------ENKLAKLVIERVP-------SIEIVRM 114 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHH-HHHHHCSC--CSSCCHH------HHHHHHHHHHHST-------TCSEEEE
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHH-HHHhhCcC--cCCCCHH------HHHHHHHHHHhCC-------CCCEEEE
Confidence 5677899987753 222 2444443322 11222211 2344332 3688888888763 2469999
Q ss_pred ccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCC--------------------eEeeecc-Ccccc
Q 012785 169 GTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKS--------------------RLYKWAG-DAKRF 225 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~--------------------~~~~~~~-d~~~l 225 (456)
|+|++++++.+++.+.. +++ +|++.+|+|+++...+...+. .++.++. |.+.+
T Consensus 115 ~~~Gsea~~~ai~~a~~~~~~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 190 (429)
T 3k28_A 115 VNSGTEATMSALRLARGYTGRN----KILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESV 190 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCC----EEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHH
T ss_pred eCChHHHHHHHHHHHHHhhCCC----EEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHH
Confidence 99999999999988764 556 899999999987655443221 1122222 45554
Q ss_pred cc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccc
Q 012785 226 NK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKS 287 (456)
Q Consensus 226 ~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~ 287 (456)
+. .++++++++.++|++|.+.+ ++|+++|+++|+||+|.+. ..+.. ...+...-+.||||.
T Consensus 191 e~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~ 269 (429)
T 3k28_A 191 KYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKV 269 (429)
T ss_dssp HHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGG
T ss_pred HHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhh
Confidence 32 24455655444556666643 3899999999999999865 33221 111222235689999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHHH---hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKYI---ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++ +|+|+||++++ +++++.+.... ...+++.++++|.++.+.|+. . + ++.++.++++++.+
T Consensus 270 ~~-~G~~iG~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~---~--------~---~~~~~~~~~~~~~l 333 (429)
T 3k28_A 270 IG-GGLPVGAYGGK-AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQ---L--------T---PESYVEFERKAEML 333 (429)
T ss_dssp GG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHT---C--------C---HHHHHHHHHHHHHH
T ss_pred hc-CCCCeEEEEEc-HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHH---H--------H---HHHHHHHHHHHHHH
Confidence 98 69999999996 88888775532 335788999999999999982 2 1 45666677777777
Q ss_pred HHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc---------------cHHHHHHHHHhCCEEeecCCC
Q 012785 365 RMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------------EIEDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 365 ~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~l~~~gI~v~pg~~ 425 (456)
.+.|++. +.....++.| +|+++.+.. ....+.+.|.++||.++|+.
T Consensus 334 ~~~L~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~- 398 (429)
T 3k28_A 334 EAGLRKAAEKHGIPHHINRAG--------------SMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ- 398 (429)
T ss_dssp HHHHHHHHHHTTCCCEEEEET--------------TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-
T ss_pred HHHHHHHHhhCCCCEEEEeec--------------cEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC-
Confidence 7777653 3322223333 356665521 12567778889999999963
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 426 FGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.+++|+++..+++++++++++|++++
T Consensus 399 ----~~~~r~~~~~t~e~i~~~l~~l~~~l 424 (429)
T 3k28_A 399 ----FEGLFLSTVHSDADIEATIAAAEIAM 424 (429)
T ss_dssp ----TSCBCCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 45789988779999999999999876
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-24 Score=212.69 Aligned_cols=274 Identities=14% Similarity=0.105 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. +++++|+|+++++.+++.++ .++|| +|++++|+|+.+...++..|++++.++.
T Consensus 41 ~~~l~~~la~~~~~--------~~~~~~~~gt~al~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~ 108 (393)
T 1mdo_A 41 NQELEAAFCRLTGN--------QYAVAVSSATAGMHIALMALGIGEGD----EVITPSMTWVSTLNMIVLLGANPVMVDV 108 (393)
T ss_dssp HHHHHHHHHHHHCC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCHHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHhCC--------CcEEEecChHHHHHHHHHHcCCCCCC----EEEeCCCccHhHHHHHHHCCCEEEEEec
Confidence 48999999999963 48999999999999999999 89999 9999999999999999999999987775
Q ss_pred Cc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCC-CcEEEec
Q 012785 221 DA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPAD-HDLMLFT 283 (456)
Q Consensus 221 d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~-~~i~i~S 283 (456)
|. +.++. .++++|+++ ||||...+ ++|+++|+++|+|++|... .+.... .+ .+++++|
T Consensus 109 ~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~--~~~~d~~~~S 183 (393)
T 1mdo_A 109 DRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRH--IGARGTAIFS 183 (393)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEE--TTSSSEEEEE
T ss_pred cCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCee--cCCCCeEEEe
Confidence 53 33322 256777765 48998866 3889999999999999852 121111 12 7899999
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc------------------------CcCChHHHHHHHHHHHhhhCCC
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT------------------------IGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~------------------------~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
|||+.+++|.|+||++++++++++++........ ...+.+.+.++...++
T Consensus 184 ~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~------ 257 (393)
T 1mdo_A 184 FHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ------ 257 (393)
T ss_dssp CCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH------
T ss_pred CCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH------
Confidence 9944444556999999966889888877543111 1234444444444333
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC-cccccccccCCCCCceEEeecCc-----cHHHHHHHH
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS-QFCTFLGRAFEPQPAFAWLKCEQ-----EIEDCESFL 413 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g-~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~l 413 (456)
.+++..++.++.++.+.+.|++.+ +.+..+.. .. ...+.++|+.++. +.+.+.+.|
T Consensus 258 ---------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~l~~~l 319 (393)
T 1mdo_A 258 ---------KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEH--------IHAWHLFIIRVDEARCGITRDALMASL 319 (393)
T ss_dssp ---------THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCE--------ECCCSCEEEECCHHHHSSCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCC--------CceeEEEEEEecccccccCHHHHHHHH
Confidence 234455556667788888898876 54432110 00 0112268888862 567788889
Q ss_pred HhCCEEeecCCCCC-------------C-------CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 414 KGNKILTRSGKHFG-------------F-------SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 414 ~~~gI~v~pg~~fg-------------~-------~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
.++||.+++|..+. . ..+.+|+++.. ++++++.++++|+++++
T Consensus 320 ~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 320 KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999986440 1 13589999873 89999999999998764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=223.19 Aligned_cols=314 Identities=11% Similarity=0.017 Sum_probs=191.6
Q ss_pred CCCCeEEecCCCCC--C-CchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT--M-YEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~--~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..+... + ..++.+.++.. ..+..... ..|+... ..+|++.+++++. ..++|++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~-~~~~~~~~--~~~~~~~------~~~la~~l~~~~~-------~~~~v~~ 114 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVI-EAVERGLS--FGAPTEM------EVKMAQLVTDLVP-------TMDMVRM 114 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHH-HHHTTCSC--CSSCCHH------HHHHHHHHHHHST-------TCSEEEE
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHH-HHHHhCcc--cCCCCHH------HHHHHHHHHhhCC-------CCCEEEE
Confidence 56778898877532 2 12344443221 11222211 1233222 2456666666543 2479999
Q ss_pred ccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhc--------------C------CeEeeecc-Ccccc
Q 012785 169 GTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCV--------------K------SRLYKWAG-DAKRF 225 (456)
Q Consensus 169 t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~--------------g------~~~~~~~~-d~~~l 225 (456)
|+|++++++.+++.+. .+++ +|++.+++|+++...+... | ..+..++. |.+.+
T Consensus 115 ~~sGsea~~~al~~a~~~~~~~----~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 190 (429)
T 4e77_A 115 VNSGTEATMSAIRLARGYTGRD----KIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASV 190 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHH
T ss_pred eCcHHHHHHHHHHHHHHhhCCC----EEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHH
Confidence 9999999999998653 2445 8999999999877522110 1 11222322 45544
Q ss_pred cc----C-CCeEEEEcCCCCCCccc-ch---------HHhhhcCcEEEeeecCCCCCCCCCCC---CCCCcEEEecCccc
Q 012785 226 NK----D-GPYIELVTSPNNPDGSV-RQ---------SVVNRSGGILVHDLAYYWPQYTSITY---PADHDLMLFTVSKS 287 (456)
Q Consensus 226 ~~----~-~~~~i~v~~P~NPtG~~-~~---------~l~~~~~~~iI~De~y~~~~~~~~~~---~~~~~i~i~S~SK~ 287 (456)
+. . ...++++++|+||+|.+ .+ ++|+++|+++|+||+|.+. ..+... ..+...-+.||||.
T Consensus 191 e~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~ 269 (429)
T 4e77_A 191 RQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKI 269 (429)
T ss_dssp HHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGG
T ss_pred HHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeeccc
Confidence 32 1 22345556787766544 33 2799999999999999964 322110 11111124599999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++ +|+|+||++++ +++++.+... ....+++.+++++.++.+.|+.+.+ ++++++.++..+..++.+
T Consensus 270 ~~-~G~~~G~~~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---------~~~~~~~~~~~~~l~~~L 338 (429)
T 4e77_A 270 IG-GGMPVGAFGGR-REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ---------VGVYETLTELTDSLATGL 338 (429)
T ss_dssp GG-TTSCCEEEEEC-HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS---------TTHHHHHHHHHHHHHHHH
T ss_pred cc-CCCCeEEEEEC-HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHH
Confidence 99 89999999996 9988877653 2345778999999999999986533 234444444444444455
Q ss_pred HHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc----------------HHHHHHHHHhCCEEeecCCCCCC
Q 012785 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE----------------IEDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----------------~~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
.+.+...+.....++. ++|+|+.++.. ...+.+.|.++||.++|+.
T Consensus 339 ~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---- 400 (429)
T 4e77_A 339 RHAAKEENIPLVVNHV--------------GGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA---- 400 (429)
T ss_dssp HHHHHHTTCCCEEEEE--------------TTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST----
T ss_pred HHHHHhCCCceEEEEe--------------eeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC----
Confidence 5544444432222222 23688877532 1567778888999999964
Q ss_pred CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 429 SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 429 ~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
...+|+++..++|++++++++|+++++
T Consensus 401 -~~~~~~~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 401 -FEAGFMSLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp -TSCEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred -CCCEEEeccCCHHHHHHHHHHHHHHHH
Confidence 345788876799999999999998864
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=218.55 Aligned_cols=313 Identities=11% Similarity=0.005 Sum_probs=195.5
Q ss_pred CCCCeEEecCCCCC---CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT---MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..+|+..|.+. ...++.+.++.. ..+.... .|..+ .++++++++++..... ..++|++
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~-~~~~~~~----~~~~~--------~~~~~~la~~l~~~~~---~~~~v~~ 113 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALK-VAMEKGT----SFGAP--------CALENVLAEMVNDAVP---SIEMVRF 113 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHH-HHHTTCS----CCSSC--------CHHHHHHHHHHHHHST---TCSEEEE
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHH-HHHHhCC----CcCCC--------CHHHHHHHHHHHHhCC---CCCEEEE
Confidence 46778999887532 222444443322 1122221 22221 3455555555533211 2579999
Q ss_pred ccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhhhcCC-e-------------------Eeeecc-Ccccc
Q 012785 169 GTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITDCVKS-R-------------------LYKWAG-DAKRF 225 (456)
Q Consensus 169 t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~-~-------------------~~~~~~-d~~~l 225 (456)
|+|++++++.+++... ..++ +|++.+|+|+++...+...+. . ++.++. |.+.+
T Consensus 114 ~~ggsea~~~al~~a~~~~~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 189 (427)
T 3fq8_A 114 VNSGTEACMAVLRIMRAYTGRD----KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAV 189 (427)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCC----EEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHH
T ss_pred eCCHHHHHHHHHHHHHHhhCCC----EEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHH
Confidence 9999999999995442 2345 899999999987654443321 1 122222 55555
Q ss_pred cc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccc
Q 012785 226 NK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKS 287 (456)
Q Consensus 226 ~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~ 287 (456)
+. .++++++++.++|++|.+.+ ++|+++|+++|+||+|.+. +.+.. ...+...-+.||||.
T Consensus 190 e~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~ 268 (427)
T 3fq8_A 190 KALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKI 268 (427)
T ss_dssp HHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGG
T ss_pred HHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhh
Confidence 32 14567777666778888765 2799999999999999965 32211 111112225789999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
++ +|+|+||++++ +++++.+... ....+++.+++++.++.+.|+.+.+ +++.++.++..+..++.+
T Consensus 269 ~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---------~~~~~~~~~~~~~~~~~l 337 (427)
T 3fq8_A 269 IG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---------PGTYEYLDQITKRLSDGL 337 (427)
T ss_dssp GG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---------TTHHHHHHHHHHHHHHHH
T ss_pred hh-CCcceEEEEEc-HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHH
Confidence 99 89999999996 9998887653 2335678899999999999985433 234444444444444444
Q ss_pred HHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc---------------HHHHHHHHHhCCEEeecCCCCCCC
Q 012785 365 RMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE---------------IEDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~---------------~~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
.+.+...+.....++ .++|+|+.+... ...+.+.|.++||.++|+.
T Consensus 338 ~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~----- 398 (427)
T 3fq8_A 338 LAIAQETGHAACGGQ--------------VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ----- 398 (427)
T ss_dssp HHHHHHTTCCCEEEE--------------ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-----
T ss_pred HHHHHhCCCCeEEEE--------------eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC-----
Confidence 444443332212221 223677776421 3467778889999999965
Q ss_pred CCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
...+|+++..++|++++++++|++++
T Consensus 399 ~~r~~~~~~~t~e~i~~~l~~l~~~l 424 (427)
T 3fq8_A 399 FEAGFTSLAHTEEDIDATLAAARTVM 424 (427)
T ss_dssp TSCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEeeCcCCHHHHHHHHHHHHHHH
Confidence 23567777669999999999999876
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=210.73 Aligned_cols=311 Identities=12% Similarity=0.031 Sum_probs=206.1
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCcccccccc-CCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFS-DVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
-.++++++.+.|.+++. +.++.. ..+..+ .|+ +..+ ..+|+++++++++. +++++++|
T Consensus 21 ~~~~~~l~~~~p~~~~~--~~~a~~-~~~~~~-----~~~~~~~~-----~~~l~~~la~~~~~--------~~~i~~~~ 79 (391)
T 3dr4_A 21 MSDLPRISVAAPRLDGN--ERDYVL-ECMDTT-----WISSVGRF-----IVEFEKAFADYCGV--------KHAIACNN 79 (391)
T ss_dssp -------CCCCCCCCSS--HHHHHH-HHHHHT-----CCSSCSHH-----HHHHHHHHHHHHTC--------SEEEEESS
T ss_pred cCCCceeccCCCCCCHH--HHHHHH-HHHHcC-----CccCCChH-----HHHHHHHHHHHhCC--------CcEEEeCC
Confidence 35789999999987733 222211 112222 244 4455 48999999999963 37888888
Q ss_pred HHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-------cccccc---CCCeEEEEcCCCC
Q 012785 172 STQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-------AKRFNK---DGPYIELVTSPNN 240 (456)
Q Consensus 172 ~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~N 240 (456)
+++++.+++.++ ..+|| +|+++.|+|+.+...++..|++++.++.| .+.++. .++++++ |+|
T Consensus 80 gt~al~~~l~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n 152 (391)
T 3dr4_A 80 GTTALHLALVAMGIGPGD----EVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVH 152 (391)
T ss_dssp HHHHHHHHHHHHTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBC
T ss_pred HHHHHHHHHHHcCCCCcC----EEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EEC
Confidence 899999999999 89999 99999999999999999999999877665 333432 2456665 678
Q ss_pred CCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 241 PDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 241 PtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
|||...+ ++|+++|+++|+|++|... .+.+.....-.++.+.||||..+++|.+.||++++++++.+++.....
T Consensus 153 ~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~ 232 (391)
T 3dr4_A 153 LYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRG 232 (391)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHB
T ss_pred CCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHh
Confidence 9999866 4899999999999999842 122211111124888888844444556899999987788888877653
Q ss_pred hcc--------------CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC-
Q 012785 315 LNT--------------IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL- 379 (456)
Q Consensus 315 ~~~--------------~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~- 379 (456)
... +..+.+...++...+ +.+++..++.++.++.+.+.|++. ++.+..+
T Consensus 233 ~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~---------------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 296 (391)
T 3dr4_A 233 QGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL---------------ERVDEHLAARERVVGWYEQKLARL-GNRVTKPH 296 (391)
T ss_dssp TTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH---------------HTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCC
T ss_pred cCCCCCCcccccccccccCCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhcC-CccccCcC
Confidence 211 233443333322222 234556677777888888888877 4544433
Q ss_pred --CCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeecCCC---CCC----------------CCCeEE
Q 012785 380 --PSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRSGKH---FGF----------------SPKYVR 434 (456)
Q Consensus 380 --~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~pg~~---fg~----------------~~~~iR 434 (456)
.+.. .....+++.++. +.+.+.+.|.++||.+++|.. ... ..+.+|
T Consensus 297 ~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lr 367 (391)
T 3dr4_A 297 VALTGR---------HVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLN 367 (391)
T ss_dssp CCTTSC---------CCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEE
T ss_pred CCCCCc---------ceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEE
Confidence 1111 011135666653 467788889999999998851 100 135799
Q ss_pred EEecC--ChhHHHHHHHHHHhhhC
Q 012785 435 ISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 435 is~~~--~~e~i~~~l~~L~~~l~ 456 (456)
|++.. ++|+++.+++.|+++++
T Consensus 368 l~~~~~~t~edi~~~~~~l~~~l~ 391 (391)
T 3dr4_A 368 LPTHAGLTEADIDRVIAALDQVLV 391 (391)
T ss_dssp ECCCTTCCHHHHHHHHHHHHTTCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99864 89999999999998874
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=220.64 Aligned_cols=254 Identities=11% Similarity=0.038 Sum_probs=175.4
Q ss_pred CceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhh-hhhhcC--------------CeEeeec
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPS-ITDCVK--------------SRLYKWA 219 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~-~~~~~g--------------~~~~~~~ 219 (456)
.++|++|+|++++++++++++.. +++ +|++.+|+|+++.. .....| ...++++
T Consensus 110 ~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~----~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~ 185 (449)
T 3a8u_X 110 LNHVFFTDSGSECALTAVKMVRAYWRLKGQATKT----KMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHT 185 (449)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCC
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCC----EEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCC
Confidence 57999999999999999998764 667 99999999998764 333332 3333332
Q ss_pred c---------C--------cccccc-------CCCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCC
Q 012785 220 G---------D--------AKRFNK-------DGPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYW 265 (456)
Q Consensus 220 ~---------d--------~~~l~~-------~~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~ 265 (456)
. | .+.++. .++++++ ++| +||||.+.+ ++|+++|+++|+||+|.+
T Consensus 186 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~ 264 (449)
T 3a8u_X 186 LLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVF-VEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITG 264 (449)
T ss_dssp CCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEE-EcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccC
Confidence 1 4 443422 2344554 466 578997544 389999999999999975
Q ss_pred CCCCCC--C-C--CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH---------HhhccCcCChHHHHHHHH
Q 012785 266 PQYTSI--T-Y--PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY---------IELNTIGVSKDSQLRAAK 330 (456)
Q Consensus 266 ~~~~~~--~-~--~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~---------~~~~~~~~s~~~q~~a~~ 330 (456)
..+.+. . . ....++ .||||.++ +| +|+||++++ +++++.+... ....+++.+++++.++.+
T Consensus 265 ~g~~g~~~~~~~~~~~~di--~s~sK~l~-~G~~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~a 340 (449)
T 3a8u_X 265 FGRTGSMFGADSFGVTPDL--MCIAKQVT-NGAIPMGAVIAS-TEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLA 340 (449)
T ss_dssp TTTTSSSSHHHHHTCCCSE--EEECGGGG-TTSSCCEEEEEE-HHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHH
T ss_pred ccccCcchhhhhcCCCCCE--EEEccccc-CCCCceEEEEEC-HHHHHHhhccCcccccccccccCCCcccHHHHHHHHH
Confidence 433221 1 0 111123 39999998 68 999999997 8898888764 123467889999999998
Q ss_pred HHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCcc-----
Q 012785 331 VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE----- 405 (456)
Q Consensus 331 ~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~----- 405 (456)
+|+.+.+. ...++++++++.+.+.|++++.+.... ..++.++|+|++++..
T Consensus 341 al~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~~~-----------~~~~~g~~~~i~~~~~~~~~~ 396 (449)
T 3a8u_X 341 ALCLLQKE-------------NLVQSVAEVAPHFEKALHGIKGAKNVI-----------DIRNFGLAGAIQIAPRDGDAI 396 (449)
T ss_dssp HHHHHHHT-------------THHHHHHHHHHHHHHHHHTTTTSTTEE-----------EEEEETTEEEEEECCBTTBSS
T ss_pred HHHHHHhc-------------CHHHHHHHHHHHHHHHHHHHhcCCCeE-----------EEeeeEEEEEEEEecCccccc
Confidence 88743221 356677778888888887643221110 0012344789988542
Q ss_pred --HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhh
Q 012785 406 --IEDCESFLKGNKILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 --~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l 455 (456)
...+.+.|.++||.++|+ .+++||++ ..+++++++++++|++++
T Consensus 397 ~~~~~~~~~l~~~Gv~v~~~------g~~iRis~~~~~t~~~i~~~l~~l~~~l 444 (449)
T 3a8u_X 397 VRPFEAGMALWKAGFYVRFG------GDTLQFGPTFNSKPQDLDRLFDAVGEVL 444 (449)
T ss_dssp HHHHHHHHHHHHHTEECEEE------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCcEEecC------CCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 125777777889999996 27899994 459999999999999875
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-25 Score=224.86 Aligned_cols=253 Identities=13% Similarity=0.114 Sum_probs=176.1
Q ss_pred CceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCCe--------------Eeeecc
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKSR--------------LYKWAG 220 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~--------------~~~~~~ 220 (456)
.++|++|+|++++++.+++++.. +++ +|++.+|+|+++...+...+.. .++.+.
T Consensus 116 ~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~----~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~ 191 (472)
T 3hmu_A 116 LNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKT----VIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPN 191 (472)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCC----EEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCc
Confidence 46999999999999999998875 345 8999999999998777665432 222221
Q ss_pred --------C--------cccccc-------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCC
Q 012785 221 --------D--------AKRFNK-------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 221 --------d--------~~~l~~-------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~ 268 (456)
| .+.++. .++++|+++.++|++|.+.+ ++|+++|+++|.||+|.+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr 271 (472)
T 3hmu_A 192 WWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGR 271 (472)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred cccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcc
Confidence 1 233321 24466666666777787653 389999999999999997544
Q ss_pred CCCCC-----CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH--HhhccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 269 TSITY-----PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY--IELNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 269 ~~~~~-----~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
.+-.. ....+ +.+|||.++..|+|+||++++ +++++.+... ....+++.++++|.++.++|+.+.+.
T Consensus 272 ~G~~~a~~~~~v~pd--i~t~sK~l~gg~~plG~v~~~-~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~--- 345 (472)
T 3hmu_A 272 TGNWFGTQTMGIRPH--IMTIAKGLSSGYAPIGGSIVC-DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEE--- 345 (472)
T ss_dssp TSSSCHHHHHTCCCS--EEEECGGGTTTSSCCEEEEEE-HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHT---
T ss_pred cCccchhHHhCCCCc--eeeechhhhcCCcceEEEEEC-HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHh---
Confidence 43211 11122 347899998555999999997 9999888321 33457889999999999999854322
Q ss_pred CCCcchhHHHHHHHHHH-HHHHHHHHHHHhc---CCccccCCCCcccccccccCCCCCceEEeecCcc------------
Q 012785 342 SGSEDECFFEFTNHQMS-TRWKQLRMAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQE------------ 405 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~------------ 405 (456)
...++++ ++.+.+++.|+++ +.+...++.| +|+++.+..+
T Consensus 346 ----------~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G--------------~~~~i~~~~~~~~~~~~~~~~~ 401 (472)
T 3hmu_A 346 ----------NILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVG--------------MMASIALTPNKASRAKFASEPG 401 (472)
T ss_dssp ----------THHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEET--------------TEEEEEECSCGGGTCCBSSCTT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--------------ceEEEEEecCccccccccchhH
Confidence 2344555 5566666666543 3233333333 3566666421
Q ss_pred --HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 406 --IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 406 --~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
...+.+.|.++||.++|+. +++||+ +..++|++++++++|++++
T Consensus 402 ~~~~~~~~~l~~~Gv~v~~~g------~~iRi~p~~~~t~e~i~~~l~~l~~~l 449 (472)
T 3hmu_A 402 TIGYICRERCFANNLIMRHVG------DRMIISPPLVITPAEIDEMFVRIRKSL 449 (472)
T ss_dssp HHHHHHHHHHHHTTBCCEEET------TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcEEEecC------CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4567788889999999852 899999 5569999999999999876
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-24 Score=212.30 Aligned_cols=305 Identities=13% Similarity=0.088 Sum_probs=209.9
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
..+|||+.|.|+++ +. +.+... ..+..+ .|.+..+ ..+|+++++++++. + ++++++|++
T Consensus 30 ~~~id~~~~~~~~~-~~-v~~a~~-~~~~~~-----~y~~~~~-----~~~l~~~la~~~~~-------~-~~v~~~~Gt 88 (399)
T 2oga_A 30 VPFLDLKAAYEELR-AE-TDAAIA-RVLDSG-----RYLLGPE-----LEGFEAEFAAYCET-------D-HAVGVNSGM 88 (399)
T ss_dssp BCSCCHHHHHHHTH-HH-HHHHHH-HHHHHT-----CCSSSHH-----HHHHHHHHHHHTTS-------S-EEEEESCHH
T ss_pred CcccccCcCCCCCC-HH-HHHHHH-HHHhcC-----CCCCchh-----HHHHHHHHHHHHCC-------C-eEEEecCHH
Confidence 36789998888765 32 332211 112111 3544455 48999999999863 2 566677779
Q ss_pred HHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCCC
Q 012785 174 QLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPD 242 (456)
Q Consensus 174 ~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPt 242 (456)
+++.+++.++ .++|| +|+++.|+|+.+...++..|.+++.++.|. +.++. .++++|+ |+|||
T Consensus 89 ~a~~~~l~~~~~~~gd----~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~t 161 (399)
T 2oga_A 89 DALQLALRGLGIGPGD----EVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLY 161 (399)
T ss_dssp HHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGG
T ss_pred HHHHHHHHHhCCCCcC----EEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCc
Confidence 9999999999 88999 999999999999999999999988776543 33332 2556665 67899
Q ss_pred cccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecC--ccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 243 GSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTV--SKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 243 G~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~--SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
|.+.+ ++|+++|+++|+||+|.... +.......-.+++++|+ ||.+|.+| |+||++++++++++++.....
T Consensus 162 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~ 240 (399)
T 2oga_A 162 GHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRN 240 (399)
T ss_dssp GCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHB
T ss_pred CCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHh
Confidence 99876 38999999999999998532 11111111136999999 79999779 999999966899888877654
Q ss_pred hc------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCC
Q 012785 315 LN------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPS 381 (456)
Q Consensus 315 ~~------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g 381 (456)
.. +...+++.+.++.+.++. ++...++.++.++.+.+.|++++++.+.. +.+
T Consensus 241 ~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~---------------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 305 (399)
T 2oga_A 241 YGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH---------------LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPD 305 (399)
T ss_dssp TTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT---------------HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTT
T ss_pred cCccccccccccccCCCcCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhccCCCccccCCCCC
Confidence 21 134567777776666651 23344455566777888887765554432 222
Q ss_pred cccccccccCCCCCceEE--eecC-ccHHHHHHHHHhCCEEeecCCCC-----------CC-----------CCCeEEEE
Q 012785 382 QFCTFLGRAFEPQPAFAW--LKCE-QEIEDCESFLKGNKILTRSGKHF-----------GF-----------SPKYVRIS 436 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~--~~~~-~~~~~~~~~l~~~gI~v~pg~~f-----------g~-----------~~~~iRis 436 (456)
+. ++| +.+. .+.+.+.+.|.++||.++++... +. ..+++||+
T Consensus 306 ~~-------------~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~ 372 (399)
T 2oga_A 306 TD-------------PVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLP 372 (399)
T ss_dssp EE-------------CCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEEC
T ss_pred Cc-------------ceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEcc
Confidence 22 343 2222 25667888888999999985321 10 02679999
Q ss_pred ecC--ChhHHHHHHHHHHhhh
Q 012785 437 MLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 437 ~~~--~~e~i~~~l~~L~~~l 455 (456)
+.. ++++++++++.|++++
T Consensus 373 ~~~~~t~edi~~~~~~l~~~~ 393 (399)
T 2oga_A 373 IGPHLERPQALRVIDAVREWA 393 (399)
T ss_dssp CSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 863 8999999999999875
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=210.33 Aligned_cols=307 Identities=12% Similarity=0.095 Sum_probs=210.8
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
.+++|++.+.|++.+ +.++.. ..+..+ .|.+..+ ..+|+++++++++. +++++++|++
T Consensus 6 ~~~~~l~~~~~~~~~---~~~~~~-~~~~~~-----~~~~~~~-----~~~l~~~la~~~~~--------~~~~~~~~gt 63 (374)
T 3uwc_A 6 VPYSYLERQFADIEP---YLNDLR-EFIKTA-----DFTLGAE-----LEKFEKRFAALHNA--------PHAIGVGTGT 63 (374)
T ss_dssp BCSCCHHHHTSSCHH---HHHHHH-HHHHHT-----CCSSCHH-----HHHHHHHHHHHTTC--------SEEEEESCHH
T ss_pred ceeeccccCCCCchH---HHHHHH-HHHHcC-----CcccChh-----HHHHHHHHHHHhCC--------CcEEEeCCHH
Confidence 356899999988764 332211 112222 2444455 48999999999863 3788899999
Q ss_pred HHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccccc---CCCeEEEEcCCCCCCc
Q 012785 174 QLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNK---DGPYIELVTSPNNPDG 243 (456)
Q Consensus 174 ~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~NPtG 243 (456)
+++.+++.++ .++|| +|+++.|+|+.+...++..|.+++.++. |.+.++. .++++++ |+||||
T Consensus 64 ~a~~~~~~~~~~~~gd----~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G 136 (374)
T 3uwc_A 64 DALAMSFKMLNIGAGD----EVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTG 136 (374)
T ss_dssp HHHHHHHHHTTCCTTC----EEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGG
T ss_pred HHHHHHHHHcCCCCCC----EEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcC
Confidence 9999999999 89999 9999999999999999999999987775 4444543 2456655 899999
Q ss_pred ccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecCc--cccCCCCceEEEEEEeCHHHHHHHHHHHhh
Q 012785 244 SVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTVS--KSTGHAGTRIGWALVKDMEVAKKMTKYIEL 315 (456)
Q Consensus 244 ~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~S--K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~ 315 (456)
...+ ++|+++|+++|+||+|..... .........++++.|+| |.++.+|. .||++++++++.+++......
T Consensus 137 ~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~ 215 (374)
T 3uwc_A 137 NIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNH 215 (374)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBT
T ss_pred CcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhc
Confidence 9876 489999999999999985322 11111111378888977 99985476 899998877888888776531
Q ss_pred ------------ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC-ccccCC-CC
Q 012785 316 ------------NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL-FSVPEL-PS 381 (456)
Q Consensus 316 ------------~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~-~g 381 (456)
.....+.+.+.++...+ +.+++..++.++.++.+.+.|++.+. +.+... .+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~aa~~~~~~---------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 280 (374)
T 3uwc_A 216 GLINRDVCVEYGINCRMDTIQAVIANRLM---------------NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREG 280 (374)
T ss_dssp TEEETTEESSCCCBCBCCHHHHHHHHHHG---------------GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTT
T ss_pred CccccCccccccccCCCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCC
Confidence 11223444333332222 23455667777888888888888765 544322 22
Q ss_pred cccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCC-----------C----C-------CCCeEEEEecC
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHF-----------G----F-------SPKYVRISMLD 439 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~f-----------g----~-------~~~~iRis~~~ 439 (456)
....++ .+.+..+ +.+.+.+.|.++||.++++... + . ..+.+||++..
T Consensus 281 ~~~~~~---------~~~~~~~-~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~ 350 (374)
T 3uwc_A 281 VYHVFH---------IYVLRVK-YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHP 350 (374)
T ss_dssp EECCCS---------SEEEEET-THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCT
T ss_pred CceeeE---------EEEEEcC-CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCC
Confidence 221110 1333333 5677888899999999998621 0 0 12689999864
Q ss_pred --ChhHHHHHHHHHHhhh
Q 012785 440 --RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 --~~e~i~~~l~~L~~~l 455 (456)
++++++++++.|++++
T Consensus 351 ~~t~edi~~~~~~l~~~l 368 (374)
T 3uwc_A 351 YLTEEEINYIIKKVREFY 368 (374)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 8999999999999876
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=216.39 Aligned_cols=271 Identities=11% Similarity=0.050 Sum_probs=189.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCCCCcEEEEeCCCCCChhhhhhhcCC
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDASEPISVVSAAPYYSSYPSITDCVKS 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~ 213 (456)
..++++++++++...- +. ..++|++++|+++++..+++++.. .++ +|++.+|+|+++...+...+.
T Consensus 95 ~~~~~~~la~~l~~~~-~~-~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~----~vi~~~~~yHg~~~~~~~~~~ 168 (476)
T 3i5t_A 95 ATSPAARLAEKIATLT-PG-DLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKK----RIIVRYDGYHGSTALTAACTG 168 (476)
T ss_dssp BCHHHHHHHHHHHTTS-ST-TCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCC----EEEEETTCCCCSSHHHHHTCC
T ss_pred CCHHHHHHHHHHHhcC-CC-CcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCC----EEEEEcCCcCcCChhhccccC
Confidence 3667777888775421 11 246899999999999999998863 244 899999999998876665433
Q ss_pred e---------------Eeeecc-----C----------cccccc-------CCCeEEEEcCCCCCCccc-ch--------
Q 012785 214 R---------------LYKWAG-----D----------AKRFNK-------DGPYIELVTSPNNPDGSV-RQ-------- 247 (456)
Q Consensus 214 ~---------------~~~~~~-----d----------~~~l~~-------~~~~~i~v~~P~NPtG~~-~~-------- 247 (456)
. .+.++. + .+.++. .++++++++.++|++|.. .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~ 248 (476)
T 3i5t_A 169 RTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFK 248 (476)
T ss_dssp CGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred ChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 2 222221 1 233321 345777787778888864 43
Q ss_pred HHhhhcCcEEEeeecCCCCCCCCCC---C-CC--CCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHH-------H
Q 012785 248 SVVNRSGGILVHDLAYYWPQYTSIT---Y-PA--DHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKY-------I 313 (456)
Q Consensus 248 ~l~~~~~~~iI~De~y~~~~~~~~~---~-~~--~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~-------~ 313 (456)
++|+++|+++|.||+|.+..+.+-. . .. ..+ +.+|||.++ .| +|+||++++ +++++.+... .
T Consensus 249 ~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd--i~t~sK~l~-~G~~plg~v~~~-~~i~~~~~~~~~~~~~~~ 324 (476)
T 3i5t_A 249 AICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD--IITFAKGVT-SGYVPLGGLAIS-EAVLARISGENAKGSWFT 324 (476)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS--EEEECGGGG-TTSSCCEEEEEC-HHHHHTTSGGGCTTCEEC
T ss_pred HHHHHcCCEEEEEecccCCccccCceeeecccCCCcc--hhhhhhhhc-CCCcCeEEEEEC-HHHHHHHhcCCccccccc
Confidence 3899999999999999975443311 1 11 122 347899999 69 999999996 9999888764 3
Q ss_pred hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CccccCCCCccccccccc
Q 012785 314 ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 314 ~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~ 390 (456)
...+++.+++++.++.++|+.+.+. ...+.++++.+.+.+.|+.+. .+...++
T Consensus 325 ~~~t~~~np~a~aAa~aaL~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~----------- 380 (476)
T 3i5t_A 325 NGYTYSNQPVACAAALANIELMERE-------------GIVDQAREMADYFAAALASLRDLPGVAETRS----------- 380 (476)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHHT-------------THHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-----------
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-----------
Confidence 3468899999999999999854321 345566667777777776542 2222233
Q ss_pred CCCCCceEEeecCcc-------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 391 FEPQPAFAWLKCEQE-------------IEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 391 ~~~~~~f~~~~~~~~-------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
.++|+++.+..+ ...+.+.+.++||.++|. .+++||+ +..+++++++++++|++++
T Consensus 381 ---~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------g~~iRi~p~l~~t~e~i~~~l~~l~~~l 451 (476)
T 3i5t_A 381 ---VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL------GDLCVISPPLIISRAQIDEMVAIMRQAI 451 (476)
T ss_dssp ---ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---cCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 333677776432 445777788899999983 2899999 5569999999999999876
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-24 Score=218.79 Aligned_cols=276 Identities=12% Similarity=0.080 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceE--EEccCHHHHHHHHHHHhcCCC--------CCCCcEEEEeCCCCCChhhhhhhc
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHI--VVGTGSTQLFQAALYALSSQD--------ASEPISVVSAAPYYSSYPSITDCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I--~~t~G~~~al~~~~~~l~~~g--------d~~~~~Vlv~~P~y~~~~~~~~~~ 211 (456)
.++++.+++++. ..|.... ++++ ++|+|+++++.++++++..++ | +|+++.|+|+.+...++..
T Consensus 138 ~~le~~l~~~la~~~g~~~~-~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d----~Vi~~~~~~~~~~~~~~~~ 212 (514)
T 3mad_A 138 AKFEAEVVAMTAHMLGGDAA-GGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAP----EAVVPVSAHAAFDKAAQYF 212 (514)
T ss_dssp HHHHHHHHHHHHHHTTGGGG-TSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSC----EEEEETTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCc-cCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCC----eEEEeCccchHHHHHHHHc
Confidence 577777777764 3454432 3577 999999999999999998776 7 9999999999999999999
Q ss_pred CCeEeeecc------Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC---------
Q 012785 212 KSRLYKWAG------DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY--------- 268 (456)
Q Consensus 212 g~~~~~~~~------d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~--------- 268 (456)
|++++.++. |.+.++. .++++|++++||||||.+.+ ++|+++|+++|+|++|.+...
T Consensus 213 G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~ 292 (514)
T 3mad_A 213 GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYP 292 (514)
T ss_dssp TCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCC
T ss_pred CCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCC
Confidence 999988775 4444442 36789999999999999977 489999999999999986321
Q ss_pred -CCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh---------hc-cCcCC---hHHHHHHHHHHH
Q 012785 269 -TSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE---------LN-TIGVS---KDSQLRAAKVLK 333 (456)
Q Consensus 269 -~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~---------~~-~~~~s---~~~q~~a~~~L~ 333 (456)
.++. ...+.++++.|++|.++ +|.++||++++++.+......... .. ....+ ...+.++...+.
T Consensus 293 ~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~ 371 (514)
T 3mad_A 293 VPPFDFRLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG 371 (514)
T ss_dssp CCCCSTTSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh
Confidence 1221 23345799999999865 788999999985543321100000 00 01112 234444444443
Q ss_pred hhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHH
Q 012785 334 VVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESF 412 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~ 412 (456)
...+++..++++++++++.+.|++++++.+..+..+ ++|+..+. +...+.+.
T Consensus 372 -------------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--------------~~~~~~~~~~~~~l~~~ 424 (514)
T 3mad_A 372 -------------EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW--------------VIAVASDELNIYQVMEE 424 (514)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS--------------EEEEECSSSCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE--------------EEEEeCCCCCHHHHHHH
Confidence 456778888899999999999998766655443322 56776643 56778888
Q ss_pred HHhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 413 LKGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 413 l~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
|.++||.+ +|..| ++++|+++.. +++++++++++|++++
T Consensus 425 L~~~Gi~v-~g~~~---~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l 466 (514)
T 3mad_A 425 MAGRGWRL-NGLHR---PPAFHVALTLRHTEPGVVDRFLADLQDAV 466 (514)
T ss_dssp HHTTTCBC-EEETT---TTEEEEECCGGGGSTTHHHHHHHHHHHHH
T ss_pred HHhcCCEe-ccCCC---CCeEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999998 55444 5689999862 5689999999998875
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=210.32 Aligned_cols=276 Identities=11% Similarity=0.053 Sum_probs=186.0
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCC-CChhhhh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYY-SSYPSIT 208 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y-~~~~~~~ 208 (456)
.|.+..| ..+|+++++++++. +++++|+|+++++.+++++++++| . +++.|+| ..+...+
T Consensus 70 ~y~~~~~-----~~~l~~~la~~~~~--------~~~~~~~~gt~a~~~al~~l~~~g-----d-i~~~~~~~~~~~~~~ 130 (456)
T 2ez2_A 70 AYAGSEN-----FYHLERTVQELFGF--------KHIVPTHQGRGAENLLSQLAIKPG-----Q-YVAGNMYFTTTRYHQ 130 (456)
T ss_dssp CSSSCHH-----HHHHHHHHHHHHCC--------SEEEEESSHHHHHHHHHHHHCCTT-----C-EEEESSCCHHHHHHH
T ss_pred hcccChh-----HHHHHHHHHHHhCC--------CcEEEeCCcHHHHHHHHHHhCCCC-----C-EeccccccchhHHHH
Confidence 4665556 48999999999853 489999999999999999998877 4 7889999 6668888
Q ss_pred hhcCCeEeeeccC----------------cccccc---CCC----eEEEEcCCCC-CCcccch--------HHhhhcCcE
Q 012785 209 DCVKSRLYKWAGD----------------AKRFNK---DGP----YIELVTSPNN-PDGSVRQ--------SVVNRSGGI 256 (456)
Q Consensus 209 ~~~g~~~~~~~~d----------------~~~l~~---~~~----~~i~v~~P~N-PtG~~~~--------~l~~~~~~~ 256 (456)
...|++++.++.+ .+.++. .++ +++++++|+| |||.+++ ++|+++|++
T Consensus 131 ~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~ 210 (456)
T 2ez2_A 131 EKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIK 210 (456)
T ss_dssp HHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCe
Confidence 8899998866554 233322 123 8899999999 9999876 278999999
Q ss_pred EEeeecCCC----------CCCCCCC--------CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc--
Q 012785 257 LVHDLAYYW----------PQYTSIT--------YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN-- 316 (456)
Q Consensus 257 iI~De~y~~----------~~~~~~~--------~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~-- 316 (456)
+|+||+|.. ..+.+.. ..... +++.|++|..+ +| |.||++++++++++.+.......
T Consensus 211 li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-~~~~S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
T 2ez2_A 211 VFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD-GCTMSGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEG 287 (456)
T ss_dssp EEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEEEETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred EEEEccccccccccccccccccCCcchhhhhhhhcccCC-EEEEeCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccC
Confidence 999999874 2333221 11223 44457888765 77 89999985588988887764321
Q ss_pred ---cCcCChHHHHH-HHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCC
Q 012785 317 ---TIGVSKDSQLR-AAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFE 392 (456)
Q Consensus 317 ---~~~~s~~~q~~-a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~ 392 (456)
..+.+.....+ +...++. .+ +...++.++..+.+.+.|++. ++.+..|.+++
T Consensus 288 ~~~~~~~~~~~~~a~a~~~~~~-----------~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~--------- 343 (456)
T 2ez2_A 288 MPSYGGLAGRDMEAMAIGLREA-----------MQ---YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGH--------- 343 (456)
T ss_dssp CTTTTTCCHHHHHHHHHHHHHH-----------TC---HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSS---------
T ss_pred cccccCcchhHHHHHHHHHHHH-----------hH---HHHHHHHHHHHHHHHHHHhcC-CCccccCCCce---------
Confidence 12334332222 3333331 01 123333445556777777765 35555565555
Q ss_pred CCCceEEeecC----c-cHHHH-----HHHH-HhCCEEeec-CCCC-------C----CCCCeEEEEec---CChhHHHH
Q 012785 393 PQPAFAWLKCE----Q-EIEDC-----ESFL-KGNKILTRS-GKHF-------G----FSPKYVRISML---DRDENYNL 446 (456)
Q Consensus 393 ~~~~f~~~~~~----~-~~~~~-----~~~l-~~~gI~v~p-g~~f-------g----~~~~~iRis~~---~~~e~i~~ 446 (456)
|+|+.+. . +.+.+ .+.| +++||.+.+ |..| + ...+++||++. .+++++++
T Consensus 344 ----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~ 419 (456)
T 2ez2_A 344 ----AVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDV 419 (456)
T ss_dssp ----EEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHH
T ss_pred ----EEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHH
Confidence 7888762 1 22222 4444 789999876 4433 1 12479999998 58999999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
++++|++++
T Consensus 420 ~~~~l~~~l 428 (456)
T 2ez2_A 420 VADGIIKLY 428 (456)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=208.60 Aligned_cols=270 Identities=14% Similarity=0.083 Sum_probs=187.4
Q ss_pred HHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh-h--hhhcC--CeEeeecc-
Q 012785 147 KEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS-I--TDCVK--SRLYKWAG- 220 (456)
Q Consensus 147 ~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~-~--~~~~g--~~~~~~~~- 220 (456)
++++++++. +++.|++++| ++++.+++.++.++|| +|++++|+|+.+.. . ....| .+++.++.
T Consensus 76 ~~la~~~g~------~~~~i~~~sG-t~a~~~a~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 144 (405)
T 2vi8_A 76 ERAKQLFGA------EHANVQPHSG-AQANMAVYFTVLEHGD----TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVD 144 (405)
T ss_dssp HHHHHHHTC------SEEECCCSSH-HHHHHHHHHHHCCTTC----EEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBC
T ss_pred HHHHHHhCC------CceEEEecCc-HHHHHHHHHHhcCCCC----EEEEecccccchhcccchhhhccceeEEEecccc
Confidence 466766643 2334555676 9999999999999999 99999999998854 2 12334 36666543
Q ss_pred ------Ccccccc----CCCeEEEEcCCCCC-Ccccch---HHhhhcCcEEEeeecCCC----CCCCCCCCCCCCcEEEe
Q 012785 221 ------DAKRFNK----DGPYIELVTSPNNP-DGSVRQ---SVVNRSGGILVHDLAYYW----PQYTSITYPADHDLMLF 282 (456)
Q Consensus 221 ------d~~~l~~----~~~~~i~v~~P~NP-tG~~~~---~l~~~~~~~iI~De~y~~----~~~~~~~~~~~~~i~i~ 282 (456)
|.+.++. .+++++++ +|+|+ .-..+. ++|+++|+++|+||+|.. ....... ....+++++
T Consensus 145 ~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~-~~~~di~~~ 222 (405)
T 2vi8_A 145 PETHVIDYDDVREKARLHRPKLIVA-AAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP-VPYAHFVTT 222 (405)
T ss_dssp TTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEEE
T ss_pred cccCCcCHHHHHHHHHhcCCeEEEE-eCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCc-cccCCEEEE
Confidence 4444432 25678777 55443 222233 479999999999999983 1111111 113459999
Q ss_pred cCccccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHH-HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 283 TVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRA-AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 283 S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a-~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
|+||.++ ++| ||++++ +++++.+.........+.+.+.|.++ .++++.+. +++++..+++++++
T Consensus 223 s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~----------~~~~~~~~~~~~~~ 288 (405)
T 2vi8_A 223 TTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL----------QDDFKAYAKRVVDN 288 (405)
T ss_dssp ESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH----------SHHHHHHHHHHHHH
T ss_pred eccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHH
Confidence 9999997 666 999997 89999888775444455544444444 45665321 24678899999999
Q ss_pred HHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCC----CCC-CCCe
Q 012785 361 WKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKH----FGF-SPKY 432 (456)
Q Consensus 361 ~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~----fg~-~~~~ 432 (456)
++.+.+.|++. ++.+..+.+ .++|+|+.++. +.+.+.+.|.++||.+++|.. ++. .+++
T Consensus 289 ~~~l~~~L~~~-g~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~ 355 (405)
T 2vi8_A 289 AKRLASALQNE-GFTLVSGGT------------DNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSG 355 (405)
T ss_dssp HHHHHHHHHHT-TCEEGGGSC------------SSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSE
T ss_pred HHHHHHHHHhC-CCeEecCCC------------CceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCc
Confidence 99999999987 455544321 12378998863 466788888999999999863 332 3578
Q ss_pred EEEEecC------ChhHHHHHHHHHHhhhC
Q 012785 433 VRISMLD------RDENYNLFVQRLSKILS 456 (456)
Q Consensus 433 iRis~~~------~~e~i~~~l~~L~~~l~ 456 (456)
+|+++.. +++++++++++|+++++
T Consensus 356 iRis~~~~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 356 IRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp EEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred eEEeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence 9999873 79999999999998763
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=203.64 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~ 217 (456)
..+|++.+|++++. +++++++|+++++++++.+++++|| +|+++.|.|++....+ +..|+++..
T Consensus 84 ~~~le~~lA~l~g~--------~~~i~~ssGt~Ai~~al~~l~~~Gd----~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~ 151 (415)
T 2fq6_A 84 HFSLQQAMCELEGG--------AGCVLFPCGAAAVANSILAFIEQGD----HVLMTNTAYEPSQDFCSKILSKLGVTTSW 151 (415)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESSHHHHHHHHHHTTCCTTC----EEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 36799999998863 3566678889999999999999999 9999999998876543 457888877
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhh--cCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNR--SGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVS 285 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~S 285 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|++ +|+++|+|++|..+. ..++ ..+.+++++|+|
T Consensus 152 v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~--~~g~Div~~S~s 229 (415)
T 2fq6_A 152 FDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL--DFGIDVSIQAAT 229 (415)
T ss_dssp ECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG--GGTCSEEEEETT
T ss_pred ECCCCHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc--ccCCeEEEEeCc
Confidence 764 5566654 36799999999999999987 48999 999999999998532 2223 245689999999
Q ss_pred cccCCCCce-EEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 286 KSTGHAGTR-IGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 286 K~~g~~G~R-iG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
|.+|.+|.+ +||++++ ++++++++..........++..+.++...++ .+....+...++.+.+
T Consensus 230 K~lg~~g~~~~G~l~~~-~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~---------------~l~~r~~~~~~n~~~l 293 (415)
T 2fq6_A 230 KYLVGHSDAMIGTAVCN-ARCWEQLRENAYLMGQMVDADTAYITSRGLR---------------TLGVRLRQHHESSLKV 293 (415)
T ss_dssp TTTTCSSSCCCEEEEEC-TTTHHHHHHHHHHTTCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEEeC-HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh---------------HHHHHHHHHHHHHHHH
Confidence 999988865 6999986 6788888776653344455555554444443 3344555667778888
Q ss_pred HHHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCcc--HHHHHHHHHh---CCEEeecCCC----------
Q 012785 365 RMAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQE--IEDCESFLKG---NKILTRSGKH---------- 425 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~l~~---~gI~v~pg~~---------- 425 (456)
.+.|++.+.+.....++.- .....+.....+..+++.+++. .+....++.. .++.+..|+.
T Consensus 294 ~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~ 373 (415)
T 2fq6_A 294 AEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPE 373 (415)
T ss_dssp HHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHH
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEecCCC
Confidence 8889887543211111100 0000000112345688888752 4445555544 3455555522
Q ss_pred ----------CCCCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 426 ----------FGFSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 426 ----------fg~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.|..++.||+|++. ++++++.+.+.|+++
T Consensus 374 ~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 374 HIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp HHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred ccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 23346899999986 456677777777654
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=215.30 Aligned_cols=305 Identities=10% Similarity=0.008 Sum_probs=186.6
Q ss_pred CCCCeEEecCCCCC---CCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT---MYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..||+..|.+. ...++.+.++.. ..+..+. .| .+ ..++++++++++..... ..++|++
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~-~~~~~~~----~~---~~-----~~~~~~~la~~l~~~~~---~~~~v~~ 118 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIA-EALSHGV----QY---AA-----SHPLEVRWAERIVAAFP---SIRKLRF 118 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHH-HHHTTTC----SS---CS-----SCHHHHHHHHHHHHHCT---TCSEEEE
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHH-HHHHhCC----CC---CC-----CCHHHHHHHHHHHhhCC---CCCEEEE
Confidence 45678999888532 223444443322 1122221 12 12 36889999999855422 3579999
Q ss_pred ccCHHHHHHHHHHH---hcCCCCCCCcEEEEeCCCCCChhhhhhh-----------cCCe------Eeeec-cCcccccc
Q 012785 169 GTGSTQLFQAALYA---LSSQDASEPISVVSAAPYYSSYPSITDC-----------VKSR------LYKWA-GDAKRFNK 227 (456)
Q Consensus 169 t~G~~~al~~~~~~---l~~~gd~~~~~Vlv~~P~y~~~~~~~~~-----------~g~~------~~~~~-~d~~~l~~ 227 (456)
|+|+++++..++++ +..+ + +|++.+|+|+++...+.. .|.. ++.++ .|.+.++.
T Consensus 119 ~~gg~eA~~~al~~ar~~~~~-~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~ 193 (453)
T 2cy8_A 119 TGSGTETTLLALRVARAFTGR-R----MILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMRE 193 (453)
T ss_dssp ESCHHHHHHHHHHHHHHHHCC-C----EEEEECC----------------------------CGGGEEEECTTCHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHhhCC-C----EEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHH
Confidence 99999999999998 5554 5 799999999976653322 2332 23333 25555542
Q ss_pred ------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCccccC
Q 012785 228 ------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSKSTG 289 (456)
Q Consensus 228 ------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK~~g 289 (456)
.++++|+++..+||||.+++ ++|+++|+++|+||+|.+. +.+.. ...+...-+.||||.++
T Consensus 194 ~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~ 272 (453)
T 2cy8_A 194 VFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASA 272 (453)
T ss_dssp HHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGG
T ss_pred HHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhh
Confidence 24456555333578997653 2899999999999999864 22211 00111111449999999
Q ss_pred CCCceEEEEEEeCHHHHHHHHH-----HHhhccCcCChHHHHHHHHHHHh-hhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 290 HAGTRIGWALVKDMEVAKKMTK-----YIELNTIGVSKDSQLRAAKVLKV-VSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 290 ~~G~RiG~l~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~a~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
+|+|+||++++ +++++.+.. .....+++.+++++.++.+.|+. + .. ...++++++++.
T Consensus 273 -~G~~~G~v~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~-------------~~~~~~~~~~~~ 336 (453)
T 2cy8_A 273 -GGLPGGILGGR-EDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-ED-------------DVCAKINDLGQF 336 (453)
T ss_dssp -TTSSCEEEEEC-HHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HT-------------THHHHHHHHHHH
T ss_pred -CCcceEEEech-HHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hh-------------hHHHHHHHHHHH
Confidence 69999999997 888887754 12335788999999999998884 3 21 234555666666
Q ss_pred HHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc------------------c---HHHHHHHHHhCCE
Q 012785 364 LRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ------------------E---IEDCESFLKGNKI 418 (456)
Q Consensus 364 l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~------------------~---~~~~~~~l~~~gI 418 (456)
+.+.|+++ +.....++ .++|+|+.++. + ...+.+.|.++||
T Consensus 337 l~~~L~~~~~~~~~~~~~~~--------------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv 402 (453)
T 2cy8_A 337 AREAMNHLFARKGLNWLAYG--------------RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGV 402 (453)
T ss_dssp HHHHHHHHHHHTTCCEEEEC--------------CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHhhCCCcEEEEE--------------eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCe
Confidence 66666543 32111222 33378888863 1 3457777788999
Q ss_pred EeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.+.|+ +.+|+++..+++++++++++|++++
T Consensus 403 ~v~~~-------~~~~l~~~~t~~~i~~~l~~l~~~l 432 (453)
T 2cy8_A 403 DIGGR-------GSVFLSAQHEREHVEHLVTTFDRVL 432 (453)
T ss_dssp ECBTT-------TEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCC-------CCEEeeccCCHHHHHHHHHHHHHHH
Confidence 99763 2478887669999999999999875
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=201.20 Aligned_cols=272 Identities=10% Similarity=0.006 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh---cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL---SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~ 218 (456)
..+++++++++++. +++++|+|+++++.+++.++ .++|| +|++++|+|+.+...++..|++++.+
T Consensus 34 ~~~l~~~la~~~~~--------~~v~~~~ggt~al~~~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~ 101 (375)
T 2fnu_A 34 SLLFEEALCEFLGV--------KHALVFNSATSALLTLYRNFSEFSADRN----EIITTPISFVATANMLLESGYTPVFA 101 (375)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESCHHHHHHHHHHHSSCCCTTSC----EEEECSSSCTHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHHHHhcccCCCCC----EEEECCCccHhHHHHHHHCCCEEEEe
Confidence 48999999999963 28999999999999999999 88999 99999999999999999999998877
Q ss_pred ccC------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEec
Q 012785 219 AGD------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFT 283 (456)
Q Consensus 219 ~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S 283 (456)
+.| .+.++. .+++++++++| ||.+.+ ++|+++|+++|+|++|......... ...-.++.+.|
T Consensus 102 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s 178 (375)
T 2fnu_A 102 GIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFS 178 (375)
T ss_dssp CBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred ccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEe
Confidence 654 444443 25677777666 999876 4899999999999999853221110 01112589999
Q ss_pred Cc--cccCCCCceEEEEEE-eCHHHHHHHHHHHhhcc----------------CcCChHHHHHHHHHHHhhhCCCCCCCC
Q 012785 284 VS--KSTGHAGTRIGWALV-KDMEVAKKMTKYIELNT----------------IGVSKDSQLRAAKVLKVVSDSCKPSGS 344 (456)
Q Consensus 284 ~S--K~~g~~G~RiG~l~~-~~~~~~~~l~~~~~~~~----------------~~~s~~~q~~a~~~L~~~~~~~~~~~~ 344 (456)
|| |.+|. | +|++++ +++++++++........ .+.+.+...++.. .
T Consensus 179 ~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~----------- 242 (375)
T 2fnu_A 179 FHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS--Q----------- 242 (375)
T ss_dssp CCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH--H-----------
T ss_pred CCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHH--H-----------
Confidence 99 99984 7 788888 45788888877643111 1334333322222 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-CcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEE
Q 012785 345 EDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKIL 419 (456)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~ 419 (456)
.+.+++..++.+++++.+.+.|++++++.+..+. +.. ..+.++|+.++. +.+.+.+.|.++||.
T Consensus 243 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~ 311 (375)
T 2fnu_A 243 --LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDK---------SSNHLYPILMHQKFFTCKKLILESLHKRGIL 311 (375)
T ss_dssp --HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSC---------CCCSCEEEEECGGGGGGHHHHHHHHHHTTEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCC---------cceEEEEEEeCccccchHHHHHHHHHHCCCC
Confidence 2245677788889999999999987655554431 100 011145777753 566788888899999
Q ss_pred eecC----CC---CC-------C------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 420 TRSG----KH---FG-------F------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 420 v~pg----~~---fg-------~------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
++.+ .. |+ . ..+++||++.. +++++++++++|++++
T Consensus 312 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 312 AQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTF 369 (375)
T ss_dssp CBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 9832 11 11 0 12689999874 8899999999999875
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=214.33 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHH---hcCCCCCCCcEEEEeCCCCCChhhhhhh----------
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYA---LSSQDASEPISVVSAAPYYSSYPSITDC---------- 210 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~---l~~~gd~~~~~Vlv~~P~y~~~~~~~~~---------- 210 (456)
++++.+++.+..... ..++|++|+|+++++..++++ +.. ++ +|++.+|+|+++...+..
T Consensus 92 ~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~~al~~ar~~~~-~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 163 (424)
T 2e7u_A 92 PLEVALAKKVKRAYP---FVDLVRFVNSGTEATMSALRLARGYTG-RP----YIVKFRGNYHGHADGLLVEAGSGALTLG 163 (424)
T ss_dssp HHHHHHHHHHHHHCT---TCCEEEEESSHHHHHHHHHHHHHHHHC-CC----EEEEETTCCCCCCGGGSEECCSSSCCBC
T ss_pred HHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhC-CC----EEEEECCCcCCCcHHHHHhcCCcccccC
Confidence 444555555432211 246999999999999999986 444 45 899999999987654321
Q ss_pred ----cCC------eEeeec-cCcccccc------CCCeEEEEcCCCCC-Ccccch---------HHhhhcCcEEEeeecC
Q 012785 211 ----VKS------RLYKWA-GDAKRFNK------DGPYIELVTSPNNP-DGSVRQ---------SVVNRSGGILVHDLAY 263 (456)
Q Consensus 211 ----~g~------~~~~~~-~d~~~l~~------~~~~~i~v~~P~NP-tG~~~~---------~l~~~~~~~iI~De~y 263 (456)
.|. +++.++ .|.+.++. .+++ +++++|+|| ||.+++ ++ +++|+++|+||+|
T Consensus 164 ~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~ 241 (424)
T 2e7u_A 164 VPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVM 241 (424)
T ss_dssp EESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTT
T ss_pred CCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCc
Confidence 232 234443 25555542 2334 445578665 897654 37 8999999999999
Q ss_pred CCCCCCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH---hhccCcCChHHHHHHHHHHHhhhC
Q 012785 264 YWPQYTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI---ELNTIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 264 ~~~~~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~a~~~L~~~~~ 337 (456)
.+. ..+-. ...+...-+.||||.+| +|+|+||++++ +++++.+.... ...+++.++++|.++.++|+.+.+
T Consensus 242 ~g~-~~g~~~~~~~~~~~~di~s~sK~l~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 318 (424)
T 2e7u_A 242 TGF-RLAFGGATELLGLKPDLVTLGKILG-GGLPAAAYAGR-REIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE 318 (424)
T ss_dssp TTT-TSSTTHHHHHHTCCCSEEEECGGGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH
T ss_pred ccc-ccchhHHHHHhCCCcchhhhhhhhh-CCcceEEEEEc-HHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 964 22111 00011111349999999 79999999997 88888776521 234678899999999998884322
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc---------
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--------- 404 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--------- 404 (456)
.+...++++++++.+.+.|+++ +.....++ .++|+|+.++.
T Consensus 319 ------------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--------------~g~~~~i~~~~~~~~~~~~~ 372 (424)
T 2e7u_A 319 ------------NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNR--------------VGSMITVFFTEGPVVTFQDA 372 (424)
T ss_dssp ------------CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE--------------ETTEEEEESSSSCCCSHHHH
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe--------------eceEEEEEEeCCCCcchhhh
Confidence 1245666777777777777653 32111222 23378888853
Q ss_pred ------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 405 ------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
....+.+.|.++||.++||. ...+|+++..+++++++++++|++++
T Consensus 373 ~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 373 RRTDTELFKRFFHGLLDRGIYWPPSN-----FEAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp TTSCHHHHHHHHHHHHTTTEECCSSS-----SSCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHHCCeEEeccC-----CCceEeeccCCHHHHHHHHHHHHHhC
Confidence 13457777789999999975 23578887679999999999999864
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-22 Score=200.11 Aligned_cols=261 Identities=14% Similarity=0.092 Sum_probs=175.5
Q ss_pred CCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh---hhhhcC--CeEeeec------cCcccccc---
Q 012785 162 ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS---ITDCVK--SRLYKWA------GDAKRFNK--- 227 (456)
Q Consensus 162 ~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~---~~~~~g--~~~~~~~------~d~~~l~~--- 227 (456)
++++|++++| ++++.+++.+++++|| +|++++|+|+.+.. .....| ..++.++ +|.+.++.
T Consensus 87 ~~~~i~~~sG-t~a~~~~~~~~~~~gd----~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~ 161 (417)
T 3n0l_A 87 KFANVQPNSG-SQANQGVYAALINPGD----KILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAK 161 (417)
T ss_dssp SEEECCCSSH-HHHHHHHHHHHSCTTC----EEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHH
T ss_pred CCcceEeccH-HHHHHHHHHHhcCCCC----EEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHH
Confidence 3457888888 7999999999999999 99999999987655 333333 3444444 34444432
Q ss_pred -CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CCCCCCCCCCCCcEEEecCccccCCCCceEEE
Q 012785 228 -DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQYTSITYPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
.++++|++++|+| |..++ ++|+++|+++|+||+|+. ....+. ...+.+++++|+||.+ +|.|+||
T Consensus 162 ~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~~~~~di~~~s~sK~l--~g~~~G~ 236 (417)
T 3n0l_A 162 KEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPS-PFPYAHVVSSTTHKTL--RGPRGGI 236 (417)
T ss_dssp HHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-CTTTCSEEEEESSTTT--CSCSCEE
T ss_pred hcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCC-ccccceEEEeeCcccc--CCCCeeE
Confidence 3678998888887 55544 389999999999999752 111111 1124579999999977 7889999
Q ss_pred EEEeCHHHHHHHHHHHhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 298 ALVKDMEVAKKMTKYIELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 298 l~~~~~~~~~~l~~~~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
++++++++++.+......... +.+...+.++...+... .++.++..+++++++++.+.+.|++.+ +.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~ 305 (417)
T 3n0l_A 237 IMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN----------LSDEWKVYAKQVRTNAQVLANVLMDRK-FKL 305 (417)
T ss_dssp EEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----------TSHHHHHHHHHHHHHHHHHHHHHHHTT-CEE
T ss_pred EEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHhCC-cee
Confidence 999768899988877543333 33444444444445421 134567888889999999999998843 443
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCC-----CCCeEEEEec------CChh
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGF-----SPKYVRISML------DRDE 442 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~-----~~~~iRis~~------~~~e 442 (456)
... + ..++++|+.++. +.+.+.+.|+++||.++++..+.. ..+.+|+++. .+++
T Consensus 306 ~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 373 (417)
T 3n0l_A 306 VSD-G-----------TDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEK 373 (417)
T ss_dssp GGG-S-----------CSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHH
T ss_pred ccC-C-----------CCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHH
Confidence 321 1 122378888742 567888999999999997654321 2467999975 2579
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
++++++++|++++
T Consensus 374 ~i~~~~~~l~~~l 386 (417)
T 3n0l_A 374 EMEIVSNYIADIL 386 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=205.52 Aligned_cols=284 Identities=15% Similarity=0.097 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
..+|++.++++++. + ..++++++++++.+++.+++++|| +|++++|+|..+.. .++..|++++.
T Consensus 84 ~~~le~~lA~l~g~-------~-~~v~~~sG~~Ai~~al~al~~~Gd----~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~ 151 (430)
T 3ri6_A 84 VEDLEQRLKNLTGA-------L-GVLALGSGMAAISTAILTLARAGD----SVVTTDRLFGHTLSLFQKTLPSFGIEVRF 151 (430)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCC-------C-cEEEECCHHHHHHHHHHHHhCCCC----EEEEcCCCchhHHHHHHHHHHHcCCEEEE
Confidence 37889999988863 3 344444556999999999999999 99999999998877 66778999988
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+|++|..+.... +...+.+++++|+||.+
T Consensus 152 v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~-~~~~g~div~~S~sK~l 230 (430)
T 3ri6_A 152 VDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLE-AKRLGVDIEVLSSTKFI 230 (430)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCC-GGGGTCSEEEEECCCEE
T ss_pred eCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-hHHcCCEEEEECCcccc
Confidence 876 4555543 36799999999999999987 48999999999999998543311 12234589999999999
Q ss_pred CCCCceEEEEEE--eCHHH------------------HHHHHH-HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 289 GHAGTRIGWALV--KDMEV------------------AKKMTK-YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 289 g~~G~RiG~l~~--~~~~~------------------~~~l~~-~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
+.+|..+|.+++ .+..+ +++++. .........+++....+...++
T Consensus 231 ~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~-------------- 296 (430)
T 3ri6_A 231 SGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLE-------------- 296 (430)
T ss_dssp ETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH--------------
T ss_pred cCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh--------------
Confidence 877777776666 22111 233222 1222334455555444444343
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc----ccccccCCCCCc-eEEeecCc--cHHHHHHHHHhCCEEe
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC----TFLGRAFEPQPA-FAWLKCEQ--EIEDCESFLKGNKILT 420 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~----~~~~~~~~~~~~-f~~~~~~~--~~~~~~~~l~~~gI~v 420 (456)
.+....++..++.+.+.+.|++++.+.....++.-. ...++.. ..+. .+|+.+++ ....+.+.++..++.+
T Consensus 297 -~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~-g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~ 374 (430)
T 3ri6_A 297 -TMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF-RYAGSILTFELESKEASYRFMDALKLIRRAT 374 (430)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC-SSCCSEEEEECSSHHHHHHHHHHCSSSEECS
T ss_pred -hHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC-CCCceEEEEEECCHHHHHHHHHhCCcceecC
Confidence 344455666788889999998887655322211000 0000000 1133 68999873 2344556666677778
Q ss_pred ecCCCCC----------------------CCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 421 RSGKHFG----------------------FSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 421 ~pg~~fg----------------------~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.+|..|. ..++.||||++ .|+.+++++.|++.|+
T Consensus 375 s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG--~E~~~dl~~dl~~al~ 430 (430)
T 3ri6_A 375 NIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG--IEEIEDLKEDILQALC 430 (430)
T ss_dssp CCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC--SSCHHHHHHHHHHHHC
T ss_pred CCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHhhC
Confidence 8887653 24679999985 4566677777777664
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=212.69 Aligned_cols=308 Identities=14% Similarity=0.064 Sum_probs=195.2
Q ss_pred CCCCeEEecCCCCC--CC-chhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 92 GGERIINVDHGDPT--MY-EKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 92 ~~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
.++..||+..+.+. +. .++.+.++.. ..+..+. ...|+... ..++++.+++++. ..++|++
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~-~~~~~~~--~~~~~~~~------~~~l~~~la~~~~-------~~~~v~~ 117 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVE-EALARGW--LYGAPGEA------EVLLAEKILGYVK-------RGGMIRF 117 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHH-HHHHTCS--CCSSCCHH------HHHHHHHHHHHHC-------TTCEEEE
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHH-HHHHhCC--CCCCCCHH------HHHHHHHHHHhCC-------CCCEEEE
Confidence 45678999887532 21 2343443222 1122221 11222211 2455555555541 2468999
Q ss_pred ccCHHHHHHHHHHH---hcCCCCCCCcEEEEeCCCCCChhhhhh--------------hcCC------eEeeec-cCccc
Q 012785 169 GTGSTQLFQAALYA---LSSQDASEPISVVSAAPYYSSYPSITD--------------CVKS------RLYKWA-GDAKR 224 (456)
Q Consensus 169 t~G~~~al~~~~~~---l~~~gd~~~~~Vlv~~P~y~~~~~~~~--------------~~g~------~~~~~~-~d~~~ 224 (456)
|+|+++++.+++++ +. +++ +|++.+|+|+++...+. ..|+ +++.++ .|.+.
T Consensus 118 ~~sgseA~~~al~~ar~~~-~~~----~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~ 192 (434)
T 2epj_A 118 VNSGTEATMTAIRLARGYT-GRD----LILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEA 192 (434)
T ss_dssp ESSHHHHHHHHHHHHHHHH-CCC----EEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHH
T ss_pred eCCHHHHHHHHHHHHHHhh-CCC----eEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHH
Confidence 99999999999987 44 445 89999999998665332 1232 233443 25555
Q ss_pred ccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCC---CCCCCcEEEecCcc
Q 012785 225 FNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSIT---YPADHDLMLFTVSK 286 (456)
Q Consensus 225 l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~---~~~~~~i~i~S~SK 286 (456)
++. .++++|+++..+||||.+++ ++|+++|+++|+||+|.+. ..+-. ...+...-+.||||
T Consensus 193 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK 271 (434)
T 2epj_A 193 LERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGK 271 (434)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEG
T ss_pred HHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecc
Confidence 542 24456555444578998764 3899999999999999964 22111 00111122459999
Q ss_pred ccCCCCceEEEEEEeCHHHHHHHHHHH---hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEVAKKMTKYI---ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~~~~l~~~~---~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
.++ +|+|+||++++ +++++.+.... ...+++.+++++.++.+.|+.+.+ +...++++++++.
T Consensus 272 ~l~-~G~~~G~v~~~-~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-------------~~~~~~~~~~~~~ 336 (434)
T 2epj_A 272 IIG-GGFPVGAVAGS-REVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-------------EPVYSVSREAAKA 336 (434)
T ss_dssp GGG-TTSSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-------------SCHHHHHHHHHHH
T ss_pred hhc-CCcceeeeeec-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-------------cCHHHHHHHHHHH
Confidence 999 59999999997 88888776521 235678899999999998885432 1345566667777
Q ss_pred HHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc---------------cHHHHHHHHHhCCEEeecCC
Q 012785 364 LRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------------EIEDCESFLKGNKILTRSGK 424 (456)
Q Consensus 364 l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~l~~~gI~v~pg~ 424 (456)
+.+.|+++ +.....++ .++|+|+.++. ....+.+.|.++||.+.||.
T Consensus 337 l~~~L~~~~~~~~~~~~~~~--------------~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 402 (434)
T 2epj_A 337 LEEAASEVLDRTGLPYTINR--------------VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN 402 (434)
T ss_dssp HHHHHHHHHHHHTCCEEEEE--------------ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST
T ss_pred HHHHHHHHHhhCCCcEEEEE--------------eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC
Confidence 77777653 32111122 23378888753 13557777889999999974
Q ss_pred CCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 425 HFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
...+|+++..+++++++++++|++++
T Consensus 403 -----~~~~~~~~~~t~e~i~~~l~~l~~~l 428 (434)
T 2epj_A 403 -----LEAVFTGLPHQGEALEIAVEGLRSSL 428 (434)
T ss_dssp -----TSCEECCTTCSHHHHHHHHHHHHHHH
T ss_pred -----CCcEEEeccCCHHHHHHHHHHHHHHH
Confidence 23578887679999999999998875
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=210.70 Aligned_cols=279 Identities=13% Similarity=0.147 Sum_probs=189.3
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC----CCCCCCcE---EEEeCCCCC
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS----QDASEPIS---VVSAAPYYS 202 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~---Vlv~~P~y~ 202 (456)
.|.+..| ..+|+++++++++. ++|++|+|+++++.++++++.. +|| + |+++.|.|.
T Consensus 71 ~y~~~~~-----~~~l~~~la~~~~~--------~~v~~t~ggt~A~~~al~~~~~~~~~~Gd----~~~~viv~~~~~~ 133 (467)
T 1ax4_A 71 AYAGSRN-----YYDLKDKAKELFNY--------DYIIPAHQGRGAENILFPVLLKYKQKEGK----AKNPVFISNFHFD 133 (467)
T ss_dssp CSSSCHH-----HHHHHHHHHHHHCC--------CEEEEESSHHHHHHHHHHHHHHHHHHTTC----CSSCEEEESSCCH
T ss_pred ccccCcc-----HHHHHHHHHHHcCC--------CcEEEcCCcHHHHHHHHHHHHHhhccCCC----ccceEEEeccccc
Confidence 4655556 48999999999852 5899999999999999999988 999 8 999977767
Q ss_pred ChhhhhhhcCCeEeeec----------------cCcccccc-------CCCeEEEEcCCCCCC-cccch--------HHh
Q 012785 203 SYPSITDCVKSRLYKWA----------------GDAKRFNK-------DGPYIELVTSPNNPD-GSVRQ--------SVV 250 (456)
Q Consensus 203 ~~~~~~~~~g~~~~~~~----------------~d~~~l~~-------~~~~~i~v~~P~NPt-G~~~~--------~l~ 250 (456)
.+...+...|.+++... +|.+.++. .++++|++++||||| |.+++ ++|
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la 213 (467)
T 1ax4_A 134 TTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 213 (467)
T ss_dssp HHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred hhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHH
Confidence 77778888888876432 24444432 147899999999999 78766 389
Q ss_pred hhcCcEEEeeecCCC----------CCCCCCC--CC-----CCCcEEEecCccccCCC-CceEEEEEEeCH-HHHHHHHH
Q 012785 251 NRSGGILVHDLAYYW----------PQYTSIT--YP-----ADHDLMLFTVSKSTGHA-GTRIGWALVKDM-EVAKKMTK 311 (456)
Q Consensus 251 ~~~~~~iI~De~y~~----------~~~~~~~--~~-----~~~~i~i~S~SK~~g~~-G~RiG~l~~~~~-~~~~~l~~ 311 (456)
+++|+++|+|+++.. ..+.+.. .. ..-++++.|+||.+|++ | ||++.+|+ ++++++..
T Consensus 214 ~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~ 290 (467)
T 1ax4_A 214 KQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQ 290 (467)
T ss_dssp HHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHHHHHH
T ss_pred HHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc---eEEEeCCHHHHHHHHHh
Confidence 999999999997432 0121211 10 11236779999999866 4 67767546 88888776
Q ss_pred HHhhc----cCc-CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccc
Q 012785 312 YIELN----TIG-VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTF 386 (456)
Q Consensus 312 ~~~~~----~~~-~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 386 (456)
..... ..+ .+...+.++...++...+ ++.++ ...++++.+.+.|++. ++.+..|.+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---------~~~~~----~~~~~~~~l~~~L~~~-~~~~~~~~~~~--- 353 (467)
T 1ax4_A 291 RCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---------EEYLH----YRIGQVKYLGDRLREA-GIPIQYPTGGH--- 353 (467)
T ss_dssp HHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---------HHHHH----HHHHHHHHHHHHHHHT-TCCBCSSCCSS---
T ss_pred hccccccccccCCccchHHHHHHHHHHHhhh---------hhHHH----HHHHHHHHHHHHHHhC-CCCcccCCCce---
Confidence 54321 222 232233333334542110 12222 2336677888888773 45555666666
Q ss_pred ccccCCCCCceEEee-------cCc---cHHHHHHHH-HhCCEEeec-CCCC-CC----------CCCeEEEEec---CC
Q 012785 387 LGRAFEPQPAFAWLK-------CEQ---EIEDCESFL-KGNKILTRS-GKHF-GF----------SPKYVRISML---DR 440 (456)
Q Consensus 387 ~~~~~~~~~~f~~~~-------~~~---~~~~~~~~l-~~~gI~v~p-g~~f-g~----------~~~~iRis~~---~~ 440 (456)
++|++ ++. +...+.+.| .++||.+.| |..| +. ..+++||++. .+
T Consensus 354 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t 423 (467)
T 1ax4_A 354 ----------AVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYT 423 (467)
T ss_dssp ----------EEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSC
T ss_pred ----------EEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCC
Confidence 78888 432 245566666 899999999 6542 21 1379999997 47
Q ss_pred hhHHHHHHHHHHhhh
Q 012785 441 DENYNLFVQRLSKIL 455 (456)
Q Consensus 441 ~e~i~~~l~~L~~~l 455 (456)
++++++++++|++++
T Consensus 424 ~e~i~~~~~~l~~~~ 438 (467)
T 1ax4_A 424 NDHMDYIADALIGLK 438 (467)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998875
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=209.63 Aligned_cols=277 Identities=10% Similarity=0.054 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcC-----CC---CCCCcEEEEeCCCCCChhhhhhhcC
Q 012785 142 EPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSS-----QD---ASEPISVVSAAPYYSSYPSITDCVK 212 (456)
Q Consensus 142 ~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-----~g---d~~~~~Vlv~~P~y~~~~~~~~~~g 212 (456)
..++++.+++++. .+|.+.. ++++++|+|+++++.+++.++.. +| + +|+++.|+|+.+...++..|
T Consensus 105 ~~~l~~~~~~~la~~~g~~~~-~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~----~Vi~~~~~h~~~~~~~~~~G 179 (497)
T 3mc6_A 105 VRKMESEVVSMVLRMFNAPSD-TGCGTTTSGGTESLLLACLSAKMYALHHRGITEP----EIIAPVTAHAGFDKAAYYFG 179 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCCTT-TCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSC----EEEEETTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCCC-CCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCc----eEEEeCCccHHHHHHHHHcC
Confidence 3678888888874 4555432 46899999999999999999865 45 6 99999999999999999999
Q ss_pred CeEeeeccCc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC--------CCC
Q 012785 213 SRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP--------QYT 269 (456)
Q Consensus 213 ~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~--------~~~ 269 (456)
++++.++.|. +.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|.+. ++.
T Consensus 180 ~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~ 259 (497)
T 3mc6_A 180 MKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK 259 (497)
T ss_dssp CEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC
T ss_pred CeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhccc
Confidence 9998776543 33433 25789999999999999976 4899999999999999731 111
Q ss_pred ---CCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc----CC----------hHHHHHHHHH
Q 012785 270 ---SIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG----VS----------KDSQLRAAKV 331 (456)
Q Consensus 270 ---~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~----~s----------~~~q~~a~~~ 331 (456)
++. ...+-++++.|++|.++ +|.++||++++++.+. ...........+ .. ..++.++...
T Consensus 260 ~~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~ 337 (497)
T 3mc6_A 260 NLPLLDFRVPGVTSISCDTHKYGF-APKGSSVIMYRNSDLR-MHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVN 337 (497)
T ss_dssp SCCCCSTTSTTCCEEEEETTTTTC-CCSSCEEEECSSHHHH-TTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHH
T ss_pred CCccccccCCCCcEEEECchhhcC-CCCCceeEEecCHHHH-hhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHH
Confidence 121 22345789999999764 7889999999744332 221111000000 00 3446666665
Q ss_pred HHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHH
Q 012785 332 LKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDC 409 (456)
Q Consensus 332 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~ 409 (456)
+. +..+++..++..++++.+.+.|++ ++++.+..+. .++++++..+. +...+
T Consensus 338 l~-------------~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-------------~~~~v~~~~~~~~~~~l 391 (497)
T 3mc6_A 338 MG-------------ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-------------RYSVISFSSKTLNIHEL 391 (497)
T ss_dssp HH-------------HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-------------CSSEEEEECTTTTHHHH
T ss_pred Hh-------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------CeeEEEEeCCCCCHHHH
Confidence 55 345677888888999999999998 5656554322 12245555543 57788
Q ss_pred HHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 410 ESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 410 ~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
.+.|.++||.++++.. +..+|++++. +++++++++++|++++
T Consensus 392 ~~~L~~~Gi~v~~~~~----~~~~ri~~~~~t~e~i~~~~~~L~~~l 434 (497)
T 3mc6_A 392 SDRLSKKGWHFNALQK----PVALHMAFTRLSAHVVDEICDILRTTV 434 (497)
T ss_dssp HHHHHTTTCBCEECCS----SCCEEEECCTTTTCTHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEecCCC----CCeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 8999999999987542 4468999875 8899999999999875
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=215.82 Aligned_cols=281 Identities=10% Similarity=0.027 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEe-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLY- 216 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~- 216 (456)
..++++.++++++. ++++|++|+|+++++++++.++..+++. +.+|+++.|+|+.... .++..|+++.
T Consensus 113 ~~~l~~~la~~~g~------~~~~v~~t~g~t~al~~~~~~~~~~~~~-~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~ 185 (465)
T 3e9k_A 113 DESIVGLMKDIVGA------NEKEIALMNALTVNLHLLMLSFFKPTPK-RYKILLEAKAFPSDHYAIESQLQLHGLNIEE 185 (465)
T ss_dssp THHHHGGGHHHHTC------CGGGEEECSCHHHHHHHHHHHHCCCCSS-SCEEEEETTCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCC------CcCCEEEECCHHHHHHHHHHHhccccCC-CCEEEEcCCcCCchHHHHHHHHHHcCCccee
Confidence 46788888888764 4579999999999999999999877651 1169999999988444 5666787752
Q ss_pred ---e-------eccCcccccc------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CC
Q 012785 217 ---K-------WAGDAKRFNK------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YP 274 (456)
Q Consensus 217 ---~-------~~~d~~~l~~------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~ 274 (456)
. +.+|.+.++. .++++|++++||||||.+++ ++|+++|+++|+|+++.... .++. ..
T Consensus 186 ~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~-~~~~~~~ 264 (465)
T 3e9k_A 186 SMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGN-VELYLHD 264 (465)
T ss_dssp HEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT-SCCCHHH
T ss_pred eeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCC-cCCchhh
Confidence 1 1234554432 36789999999999999987 48999999999999988532 2221 12
Q ss_pred CCCcEEEecCccccC-CCCceEEEEEEeCHHHHHHHHHHHh-------------------------hccCcCChHHHHHH
Q 012785 275 ADHDLMLFTVSKSTG-HAGTRIGWALVKDMEVAKKMTKYIE-------------------------LNTIGVSKDSQLRA 328 (456)
Q Consensus 275 ~~~~i~i~S~SK~~g-~~G~RiG~l~~~~~~~~~~l~~~~~-------------------------~~~~~~s~~~q~~a 328 (456)
.+.+++++|++|.++ .|+ ++|+++++ +++.+.+..... ....+.+.+...++
T Consensus 265 ~~~D~~~~s~~K~l~~gp~-~~g~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~ 342 (465)
T 3e9k_A 265 WGVDFACWCSYKYLNAGAG-GIAGAFIH-EKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSL 342 (465)
T ss_dssp HTCCEEEECSSSTTCCCTT-CCCEEEEC-GGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHH
T ss_pred cCCCEEEECcccccccCCC-ceEEEEEc-HHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHH
Confidence 356799999999993 344 79999996 777655432110 00114555556666
Q ss_pred HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----------CCccccCCCCcccccccccCCCCCceE
Q 012785 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----------GLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 329 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
.+.++.+. +..+++++++++++++++.+.|++. +++.+..|... ...++++
T Consensus 343 ~aal~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~---------~~~g~~~ 403 (465)
T 3e9k_A 343 HASLEIFK----------QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV---------EERGCQL 403 (465)
T ss_dssp HHHHHHHH----------HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG---------GGBCSCE
T ss_pred HHHHHHHH----------HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH---------hhcccEE
Confidence 66665321 1237788999999999999999874 44555444310 0113478
Q ss_pred EeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEe-c--CChhHHHHHHHHHHhhhC
Q 012785 399 WLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISM-L--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~-~--~~~e~i~~~l~~L~~~l~ 456 (456)
|+.++.+...+.+.|.++||.++. ..++++|+++ . .++++++++++.|+++++
T Consensus 404 ~~~~~~~~~~l~~~L~~~Gi~v~~-----~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~ 459 (465)
T 3e9k_A 404 TITFSVPNKDVFQELEKRGVVCDK-----RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILD 459 (465)
T ss_dssp EEEECCTTCCHHHHHHTTTEECEE-----ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHCCEEEec-----CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHH
Confidence 888875556788888899999973 2378999997 2 289999999999998864
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-24 Score=215.90 Aligned_cols=266 Identities=12% Similarity=0.060 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---C-----------CCCCCCcEEEEeCCCCCChhhhh
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---S-----------QDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~-----------~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
.+|++.++++++ . ...++|++|+|++++++.+++++. . +++ +|++.+|+|+++...+
T Consensus 104 ~~la~~la~~~~----~-~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~----~Vi~~~~~yhg~~~~~ 174 (449)
T 2cjg_A 104 ARFVETFARVLG----D-PALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT----QVLHLRGAFHGRSGYT 174 (449)
T ss_dssp HHHHHHHHHHHC----C-TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCC----EEEEETTCCCCSSTTG
T ss_pred HHHHHHHHHhcC----C-CCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCC----EEEEECCCcCCcccch
Confidence 456666666653 1 135799999999999999998653 2 167 9999999999877654
Q ss_pred hhcCC--------------eEeeecc-C--ccc-------------ccc------CCCeEEEEcCCCCCCcc-cch----
Q 012785 209 DCVKS--------------RLYKWAG-D--AKR-------------FNK------DGPYIELVTSPNNPDGS-VRQ---- 247 (456)
Q Consensus 209 ~~~g~--------------~~~~~~~-d--~~~-------------l~~------~~~~~i~v~~P~NPtG~-~~~---- 247 (456)
...+. .++.++. | .+. ++. .++++|+++.+|||||. +.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l 254 (449)
T 2cjg_A 175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFF 254 (449)
T ss_dssp GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHH
T ss_pred hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHH
Confidence 33221 2333332 2 111 321 35567666544799995 554
Q ss_pred ----HHhhhcCcEEEeeecCCCCCCCCCCC---CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHH-----HHHHhh
Q 012785 248 ----SVVNRSGGILVHDLAYYWPQYTSITY---PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKM-----TKYIEL 315 (456)
Q Consensus 248 ----~l~~~~~~~iI~De~y~~~~~~~~~~---~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l-----~~~~~~ 315 (456)
++|+++|+++|+||+|.+..+.+... ..+...-+.||||.+ |+||++++ +++++.+ ......
T Consensus 255 ~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~-~~~~~~l~~~~~~~~~~~ 328 (449)
T 2cjg_A 255 AAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAG-RRVDEVADNVFAVPSRLN 328 (449)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEEC-GGGGGSTTCTTTSTTSSC
T ss_pred HHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEEC-HHHhhhhhhcccCCcccc
Confidence 38999999999999999654432210 001111134899987 79999997 7877752 222334
Q ss_pred ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CC-ccccCCCCccccccccc
Q 012785 316 NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GL-FSVPELPSQFCTFLGRA 390 (456)
Q Consensus 316 ~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~g~~~~~~~~~ 390 (456)
.+++.++++|.++.++|+.+.+ +...++++++++.+.+.|+++ +. +...++.|
T Consensus 329 ~t~~~n~~~~~aa~aal~~~~~-------------~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g--------- 386 (449)
T 2cjg_A 329 STWGGNLTDMVRARRILEVIEA-------------EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRG--------- 386 (449)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHH-------------HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEET---------
T ss_pred cCCCCCHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeecc---------
Confidence 5788999999999999984322 234566777777888777653 32 32233333
Q ss_pred CCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 391 FEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 391 ~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
+|++++++. ....+.+.|.++||.+.|+. .+++|++++ .+++++++++++|++++
T Consensus 387 -----~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----~~~iRi~~~~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 387 -----LMCAFSLPTTADRDELIRQLWQRAVIVLPAG-----ADTVRFRPPLTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp -----TEEEEECSSHHHHHHHHHHHHHTTEECEEET-----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -----EEEEEEECChHHHHHHHHHHHHCCeEEecCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 367788864 34567777778999999962 689999654 59999999999999876
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=211.28 Aligned_cols=285 Identities=11% Similarity=0.041 Sum_probs=202.2
Q ss_pred CHHHHHHHHHHHHH-hcCccCCCceEEEccCHHHHHHHHHHHh----cCCCC-CCCcEEEEeCCCCCChhhhhhhcCCeE
Q 012785 142 EPEFAKEVVRLHKV-VGNAITENHHIVVGTGSTQLFQAALYAL----SSQDA-SEPISVVSAAPYYSSYPSITDCVKSRL 215 (456)
Q Consensus 142 ~~~lr~aia~~~~~-~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd-~~~~~Vlv~~P~y~~~~~~~~~~g~~~ 215 (456)
..++++++++++.. .|.. ..+++|+|+++++..++.++ ..+|| ..+.+|++++|+|+.+...++..|+++
T Consensus 105 ~~~l~~~l~~~la~~~g~~----~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~v 180 (474)
T 1wyu_B 105 ALRLMWELGEYLKALTGMD----AITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQV 180 (474)
T ss_dssp HHHHHHHHHHHHHHHHTCS----EEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHCCC----ceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEE
Confidence 36777777777743 4432 24778899999998866554 24664 223389999999999999999999999
Q ss_pred eeeccC------cccccc---CCCeEEEEcCCCCCCcccc-h-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 216 YKWAGD------AKRFNK---DGPYIELVTSPNNPDGSVR-Q-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 216 ~~~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~-~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
+.++.| .+.++. .++++|++++| ||||.+. + ++|+++|+++|+|++|......... ...+.++
T Consensus 181 v~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di 259 (474)
T 1wyu_B 181 REIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDV 259 (474)
T ss_dssp EEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSE
T ss_pred EEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcE
Confidence 887764 444432 35789999998 6899873 3 3789999999999999643221111 1124689
Q ss_pred EEecCccccCCC-C---ceEEEEEEeCHHHHHHHHH-HH------------------hhccCcCChHHHHHHHHHHHhhh
Q 012785 280 MLFTVSKSTGHA-G---TRIGWALVKDMEVAKKMTK-YI------------------ELNTIGVSKDSQLRAAKVLKVVS 336 (456)
Q Consensus 280 ~i~S~SK~~g~~-G---~RiG~l~~~~~~~~~~l~~-~~------------------~~~~~~~s~~~q~~a~~~L~~~~ 336 (456)
++.|++|+|+.| | .|+||++++ +++++.+.. .. ...+.+.+.+.+.++...+..+
T Consensus 260 ~~~s~~K~~~~p~g~gG~~~G~~~~~-~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~- 337 (474)
T 1wyu_B 260 VHLNLHKTFTVPHGGGGPGSGPVGVK-AHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL- 337 (474)
T ss_dssp EECCTTTTTCCCCTTSCCCCCCEEEC-GGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH-
T ss_pred EEEeCccccccCCCCCCCCeEEEEEc-HHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHH-
Confidence 999999999876 4 599999997 777665541 00 0112346777888888877632
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC--ccHHHHHHHHH
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--QEIEDCESFLK 414 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~l~ 414 (456)
+ .+.+++..+.+.++++++.+.|++. ++.+..+.+.+ +..|+.++ .+...+.+.|.
T Consensus 338 -g--------~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~L~ 395 (474)
T 1wyu_B 338 -G--------LEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSM------------HEFVAQPPEGFRALDLAKGLL 395 (474)
T ss_dssp -H--------HHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCC------------SCEEEBCSTTCCHHHHHHHHH
T ss_pred -H--------HHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcc------------eEEEEEcCCCCCHHHHHHHHH
Confidence 1 4567888999999999999999986 45442222111 01566663 25667888888
Q ss_pred hCCEEeecCCCCCC-CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 415 GNKILTRSGKHFGF-SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 415 ~~gI~v~pg~~fg~-~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
++||.+ |+..|+. ..+++||+++. +++++++++++|+++++
T Consensus 396 ~~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 396 ELGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp HTTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred HCCccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 889985 6666753 36899999976 88999999999998763
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=201.86 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh-----hhcCCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT-----DCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~-----~~~g~~~~~ 217 (456)
.+|++.++++.+. +++++++++++++.+ +..++++|| +|++++|+|+.....+ +..|.++..
T Consensus 70 ~~l~~~la~l~g~--------~~~~~~~sG~~Ai~~-~~~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 136 (400)
T 3nmy_A 70 FAYERCVAALEGG--------TRAFAFASGMAATST-VMELLDAGS----HVVAMDDLYGGTFRLFERVRRRTAGLDFSF 136 (400)
T ss_dssp HHHHHHHHHHHTC--------SEEEEESSHHHHHHH-HHTTSCTTC----EEEEESSCCHHHHHHHHHTHHHHHCCEEEE
T ss_pred HHHHHHHHHHhCC--------CCEEEecCHHHHHHH-HHHHcCCCC----EEEEeCCCchHHHHHHHHhhHhhcCeEEEE
Confidence 6788888887752 356666666999998 467889999 9999999999655553 335998887
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.++. .++++|++++|+||||.+++ ++|+++|+++|+||+|..+. ..++ ..+.+++++|+||.
T Consensus 137 v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~--~~g~div~~S~sK~ 214 (400)
T 3nmy_A 137 VDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL--SLGADLVVHSATKY 214 (400)
T ss_dssp ECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTT
T ss_pred ECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh--hcCCcEEEecCccc
Confidence 775 4455543 46799999999999999987 48999999999999997421 1222 23568999999999
Q ss_pred cCCCCceEEE--EEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAGTRIGW--ALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 288 ~g~~G~RiG~--l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
++.+|.++|+ +++.++++++++.........+.+++.+.++...++ .+....++..++.+.+.
T Consensus 215 l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~---------------~l~~r~~~~~~~a~~l~ 279 (400)
T 3nmy_A 215 LNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK---------------TLPLRMRAHCENALALA 279 (400)
T ss_dssp TTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHHH
T ss_pred cCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh---------------HHHHHHHHHHHHHHHHH
Confidence 9888888866 555568899999888777778888888777777665 23345566678888888
Q ss_pred HHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccH---HHHHHHHHhCCEEeecCCCC------------
Q 012785 366 MAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEI---EDCESFLKGNKILTRSGKHF------------ 426 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~l~~~gI~v~pg~~f------------ 426 (456)
+.|++++.+.....++.- .....+.....+.++++.++++. ..+.+.++-.++.+..|..+
T Consensus 280 ~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~ 359 (400)
T 3nmy_A 280 QWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHA 359 (400)
T ss_dssp HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTT
T ss_pred HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCccccccc
Confidence 999887654332111100 00000011223447889987533 33444555455555555433
Q ss_pred ----------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 427 ----------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 ----------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|..++.+|+|++. |+.+++++.|++.|+
T Consensus 360 ~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 360 SIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERALV 397 (400)
T ss_dssp TSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred cCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHHh
Confidence 1235789999964 344556666666653
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-22 Score=199.93 Aligned_cols=283 Identities=13% Similarity=0.060 Sum_probs=187.1
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSIT 208 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~ 208 (456)
.|++..|. ..+..++++.++++++. + ++++++++++++.+++.++ ..+|| +|+++.|+|+.+...+
T Consensus 33 ~~~~~~g~-~~l~~~l~~~la~~~g~-------~-~~i~~~~gt~al~~~~~~~~~~~gd----~Vl~~~~~~~~~~~~~ 99 (418)
T 2c81_A 33 ISGYWTGE-ESMERKFAKAFADFNGV-------P-YCVPTTSGSTALMLALEALGIGEGD----EVIVPSLTWIATATAV 99 (418)
T ss_dssp TTSBCCSS-CCHHHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHH
T ss_pred ccCcccCC-HHHHHHHHHHHHHHhCC-------C-cEEEeCCHHHHHHHHHHHcCCCCcC----EEEECCCccHhHHHHH
Confidence 36666662 00024555555555542 2 4555666689999999999 88999 9999999999999999
Q ss_pred hhcCCeEeeeccC-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCC
Q 012785 209 DCVKSRLYKWAGD-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSIT 272 (456)
Q Consensus 209 ~~~g~~~~~~~~d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~ 272 (456)
+..|++++.++.| .+.++. .++++|++ +||||...+ ++|+++|+++|+|++|.... +....
T Consensus 100 ~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 176 (418)
T 2c81_A 100 LNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQR 176 (418)
T ss_dssp HHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEE
T ss_pred HHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEe
Confidence 9999999877654 333433 25677765 468998755 38899999999999998653 22111
Q ss_pred CCCCCcEEEecC--ccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc------------Cc--------------CChHH
Q 012785 273 YPADHDLMLFTV--SKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT------------IG--------------VSKDS 324 (456)
Q Consensus 273 ~~~~~~i~i~S~--SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~------------~~--------------~s~~~ 324 (456)
...-.++.+.|| ||.++. | |+||++++++++++++........ +. .+. .
T Consensus 177 ~~~~~~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~ 253 (418)
T 2c81_A 177 AGTIGDIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSE-F 253 (418)
T ss_dssp TTSSSSEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCH-H
T ss_pred cccccceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCH-H
Confidence 111124888888 999995 8 999999965888888877643211 11 111 1
Q ss_pred HHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCC-cccccccccCCCCCceEE-ee
Q 012785 325 QLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPS-QFCTFLGRAFEPQPAFAW-LK 401 (456)
Q Consensus 325 q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g-~~~~~~~~~~~~~~~f~~-~~ 401 (456)
+.+. .+.. .+.++...++.++.++.+.+.|++++++.+. .+.+ +...+ +++ +.
T Consensus 254 ~aa~--~~~~------------l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~----------~~~~~~ 309 (418)
T 2c81_A 254 QSAI--LLDQ------------LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTY----------YGYVFR 309 (418)
T ss_dssp HHHH--HHHH------------HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCC----------SEEEEE
T ss_pred HHHH--HHHH------------HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCccccc----------EEEEEE
Confidence 1111 1111 1234556666777788888899887656665 3444 33111 122 55
Q ss_pred cCc------cHHHHHHHHHhC-CEE---eecCCCC----------------------------CCC-------CCeEEEE
Q 012785 402 CEQ------EIEDCESFLKGN-KIL---TRSGKHF----------------------------GFS-------PKYVRIS 436 (456)
Q Consensus 402 ~~~------~~~~~~~~l~~~-gI~---v~pg~~f----------------------------g~~-------~~~iRis 436 (456)
+++ +.+.+.+.|.++ ||. +++|..- +.- .+.|||+
T Consensus 310 ~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~ 389 (418)
T 2c81_A 310 FDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIH 389 (418)
T ss_dssp ECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEE
T ss_pred EccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEec
Confidence 652 566788888887 999 8887511 000 1589999
Q ss_pred ec--C-ChhHHHHHHHHHHhhh
Q 012785 437 ML--D-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 437 ~~--~-~~e~i~~~l~~L~~~l 455 (456)
+. . ++|+++.+++.|++++
T Consensus 390 ~~~~~gt~edi~~~~~~l~~~~ 411 (418)
T 2c81_A 390 HAILLAEPSHLSLLVDAVAELA 411 (418)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHH
Confidence 86 3 8899999999998875
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=196.34 Aligned_cols=257 Identities=13% Similarity=0.076 Sum_probs=170.5
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC---hhhhhhhcCC--eEeeecc-------Ccccccc----CC
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS---YPSITDCVKS--RLYKWAG-------DAKRFNK----DG 229 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~---~~~~~~~~g~--~~~~~~~-------d~~~l~~----~~ 229 (456)
.++++|+++++..++.++.++|| +|++++|+|+. +.......|. +.+.++. |.+.++. .+
T Consensus 97 ~v~~~~Gs~a~~~al~~~~~~gd----~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 172 (425)
T 3ecd_A 97 NVQPHSGAQANGAVMLALAKPGD----TVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHK 172 (425)
T ss_dssp ECCCSSHHHHHHHHHHHHCCTTC----EEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHC
T ss_pred eeecCchHHHHHHHHHHccCCCC----EEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcC
Confidence 34588888999999999999999 99999999988 2222223444 4444433 4444432 36
Q ss_pred CeEEEEcCCCCCCcccchH---HhhhcCcEEEeeecCCC-----CC-CCCCCCCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 230 PYIELVTSPNNPDGSVRQS---VVNRSGGILVHDLAYYW-----PQ-YTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 230 ~~~i~v~~P~NPtG~~~~~---l~~~~~~~iI~De~y~~-----~~-~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
+++|++++|+||+-..+.+ +|+++|+++|+||+|+. .. ...+ ...+++++|+||.+ +|.|+||+++
T Consensus 173 ~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~---~~~di~~~s~sK~l--~g~~~g~~~~ 247 (425)
T 3ecd_A 173 PSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV---EHAHVVTSTTHKTL--RGPRGGFVLT 247 (425)
T ss_dssp CSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGG--CCCSCEEEEE
T ss_pred CcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCch---hcCcEEEecCCccc--CCCCcEEEEe
Confidence 7899999999998766664 78999999999999641 11 1111 12459999999987 6789999999
Q ss_pred eCHHHHHHHHHHHhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 012785 301 KDMEVAKKMTKYIELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPEL 379 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 379 (456)
+++.+.+.+......... +.+...+.++...+... .+++++..+++++++++.+.+.|++.+ +.+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~ 316 (425)
T 3ecd_A 248 NDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA----------LTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTG 316 (425)
T ss_dssp SCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH----------TSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGG
T ss_pred CCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccC
Confidence 767788887766443222 33333444344344311 135677888999999999999998864 444432
Q ss_pred -CCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCCC-CCCeEEEEecC------ChhHH
Q 012785 380 -PSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFGF-SPKYVRISMLD------RDENY 444 (456)
Q Consensus 380 -~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg~-~~~~iRis~~~------~~e~i 444 (456)
.++ +++|+.++. +.+.+.+.|+++||.++ ||..+.. ..+.+|+++.. +++++
T Consensus 317 ~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i 383 (425)
T 3ecd_A 317 GTDN-------------HLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEF 383 (425)
T ss_dssp SCSS-------------SEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHH
T ss_pred CCCc-------------eEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHH
Confidence 223 278888753 56778889999999999 5443322 35689999532 47999
Q ss_pred HHHHHHHHhhh
Q 012785 445 NLFVQRLSKIL 455 (456)
Q Consensus 445 ~~~l~~L~~~l 455 (456)
+++++.|++++
T Consensus 384 ~~~~~~l~~~l 394 (425)
T 3ecd_A 384 REVGRLILEVF 394 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-22 Score=199.02 Aligned_cols=260 Identities=16% Similarity=0.097 Sum_probs=171.4
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh---hhhhhc--CCeEeeec------cCcccccc----
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP---SITDCV--KSRLYKWA------GDAKRFNK---- 227 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~---~~~~~~--g~~~~~~~------~d~~~l~~---- 227 (456)
+++|++++| ++++..++.+++++|| +|+++.|+|+.+. ...... +.+.+.++ .|.+.++.
T Consensus 93 ~~~v~~~sG-s~a~~~a~~~~~~~gd----~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~ 167 (420)
T 3gbx_A 93 YANVQPHSG-SQANFAVYTALLQPGD----TVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKE 167 (420)
T ss_dssp EEECCCSSH-HHHHHHHHHHHCCTTC----EEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHH
T ss_pred CceeEecCc-HHHHHHHHHHhcCCCC----EEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHh
Confidence 456767777 7899999999999999 9999999998743 221222 34444443 45555443
Q ss_pred CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCC----CCCCCCCCCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 228 DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW----PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 228 ~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~----~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
.+++++++++|+||+-..+. ++|+++|+++|+||+|.. .+..+. .....+++++|+||.++ |.|.||+++
T Consensus 168 ~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~di~~~s~sK~~~--g~~gg~~~~ 244 (420)
T 3gbx_A 168 HKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN-PVPHAHVVTTTTHKTLA--GPRGGLILA 244 (420)
T ss_dssp HCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC-STTTSSEEEEESSGGGC--SCSCEEEEE
T ss_pred cCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCc-ccccCCEEEeecccCCC--CCCceEEEE
Confidence 25789999999998644444 389999999999999862 111111 12236799999999984 455699999
Q ss_pred eC--HHHHHHHHHHHhhccCcCC-hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 301 KD--MEVAKKMTKYIELNTIGVS-KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 301 ~~--~~~~~~l~~~~~~~~~~~s-~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
++ +++.+.+.........+.+ ...+.++...+... .+++++..+++++++++.+.+.|++.+ +.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~ 313 (420)
T 3gbx_A 245 KGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA----------MEPEFKVYQQQVAKNAKAMVEVFLNRG-YKVV 313 (420)
T ss_dssp SSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT----------TSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEG
T ss_pred cCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH----------HhHhHHHHHHHHHHHHHHHHHHHHhcC-Ceec
Confidence 73 2788877765443333333 33343434344321 135678889999999999999998854 4443
Q ss_pred CCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeec-------CCCCCCCCCeEEEEec------CCh
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRS-------GKHFGFSPKYVRISML------DRD 441 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~p-------g~~fg~~~~~iRis~~------~~~ 441 (456)
.+. +.++++|+.++. +.+.+.+.|+++||.+.| |..|+ ++.+||++. .++
T Consensus 314 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~--~~~iRi~~~~~~~~~~~~ 379 (420)
T 3gbx_A 314 SGG------------TENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV--TSGIRIGSPAVTRRGFKE 379 (420)
T ss_dssp GGS------------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTT--CSEEEEECHHHHHTTCCH
T ss_pred cCC------------CCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCC--CcceEEecchhcccCCCH
Confidence 321 122378888753 467788889999999999 44343 456999985 247
Q ss_pred hHHHHHHHHHHhhh
Q 012785 442 ENYNLFVQRLSKIL 455 (456)
Q Consensus 442 e~i~~~l~~L~~~l 455 (456)
++++++++.|++++
T Consensus 380 ~~i~~~~~~l~~~l 393 (420)
T 3gbx_A 380 AEVKELAGWMCDVL 393 (420)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999998875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=198.19 Aligned_cols=277 Identities=12% Similarity=0.108 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHH-HhcCccCC-CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--------hhhhcC
Q 012785 143 PEFAKEVVRLHK-VVGNAITE-NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS--------ITDCVK 212 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~-~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~--------~~~~~g 212 (456)
.++++.+.+++. .+|....+ ..+|++++|+ +++.+++.+++++|| +|++++|+|..+.. .+...|
T Consensus 89 ~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all~pGD----~Vl~~~~~~~~~~~~~~~~~~~~v~~~G 163 (483)
T 1rv3_A 89 DELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALVEPHG----RIMGLDLPDGGHLTHGFMTDKKKISATS 163 (483)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHTCTTC----EEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhcCCCC----EEEEecCccCcCcchhhhhcccCccccc
Confidence 567766666664 34544211 0358899999 888888999999999 99999999988764 234444
Q ss_pred --CeEeeec-------cCcccccc----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC------CCC
Q 012785 213 --SRLYKWA-------GDAKRFNK----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW------PQY 268 (456)
Q Consensus 213 --~~~~~~~-------~d~~~l~~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~------~~~ 268 (456)
.+.++++ +|.+.++. .++++|++ +++||+ .+++ ++|+++|+++|+|++|.. ...
T Consensus 164 ~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~ 241 (483)
T 1rv3_A 164 IFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVP 241 (483)
T ss_dssp HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC
T ss_pred ceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCC
Confidence 5555553 34444432 36889988 889988 6655 489999999999999872 111
Q ss_pred CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCH--------------HHHHHHHHHHhhccCcC-ChHHHHHHHHHHH
Q 012785 269 TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDM--------------EVAKKMTKYIELNTIGV-SKDSQLRAAKVLK 333 (456)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~--------------~~~~~l~~~~~~~~~~~-s~~~q~~a~~~L~ 333 (456)
.++. ..+++++|++|++ .|.|.||++++++ ++.+.+.........+. +.....+...+++
T Consensus 242 ~p~~---~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~ 316 (483)
T 1rv3_A 242 SPFE---HCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK 316 (483)
T ss_dssp CGGG---TCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred CCCC---CCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHH
Confidence 2221 3569999999986 6789999999843 24444443322111333 3333444445565
Q ss_pred hhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-CcccccccccCCCCCceEEeecCc---cHHHH
Q 012785 334 VVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDC 409 (456)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~ 409 (456)
... +..++..+++++++++.+.+.|.+.+ +.+..+. +.+ ++|+.++. +.+.+
T Consensus 317 ~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~-------------~~~v~~~~~g~~~~~~ 372 (483)
T 1rv3_A 317 QAM----------TPEFKEYQRQVVANCRALSAALVELG-YKIVTGGSDNH-------------LILVDLRSKGTDGGRA 372 (483)
T ss_dssp HHT----------SHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS-------------EEEEEGGGGTCCHHHH
T ss_pred HHh----------ChhHHHHHHHHHHHHHHHHHHHHhcC-CEeccCCCCCc-------------eEEEeccCCCCCHHHH
Confidence 321 23567888899999999999999874 5554432 122 67888742 56778
Q ss_pred HHHHHhCCEEee----cCCCCCCCCCeEEEEecC--C----hhHHHHHHHHHHhhh
Q 012785 410 ESFLKGNKILTR----SGKHFGFSPKYVRISMLD--R----DENYNLFVQRLSKIL 455 (456)
Q Consensus 410 ~~~l~~~gI~v~----pg~~fg~~~~~iRis~~~--~----~e~i~~~l~~L~~~l 455 (456)
.+.|.++||.++ ||..+...++++||++.. + ++++++++++|++++
T Consensus 373 ~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l 428 (483)
T 1rv3_A 373 EKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGI 428 (483)
T ss_dssp HHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHH
Confidence 889999999999 987543357899999874 4 899999999998875
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=192.05 Aligned_cols=271 Identities=12% Similarity=0.119 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. +++++++|+++++.+++.++ ..+|| +|+++.|+|+.+...++..|++++.++.
T Consensus 37 ~~~l~~~la~~~~~--------~~~~~~~sGt~al~~al~~~~~~~gd----~Vi~~~~~~~~~~~~~~~~G~~~~~~~~ 104 (367)
T 3nyt_A 37 VTELEDRLADFVGA--------KYCISCANGTDALQIVQMALGVGPGD----EVITPGFTYVATAETVALLGAKPVYVDI 104 (367)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHhCCCCcC----EEEECCCccHHHHHHHHHcCCEEEEEec
Confidence 48999999999963 38999999999999999999 88999 9999999999999999999999987765
Q ss_pred C-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecC
Q 012785 221 D-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~ 284 (456)
| .+.++. .++++|+ |+||||...+ ++|+++|+++|+|++|... .+.+.....-.++++.||
T Consensus 105 ~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf 181 (367)
T 3nyt_A 105 DPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSF 181 (367)
T ss_dssp CTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEEC
T ss_pred CCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEEC
Confidence 4 334433 2556665 8899998755 4899999999999999742 222111111127999998
Q ss_pred --ccccCCCCceEEEEEEeCHHHHHHHHHHHhh------------ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 285 --SKSTGHAGTRIGWALVKDMEVAKKMTKYIEL------------NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 285 --SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~------------~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
+|.++.+|. .|+++++++++.++++..... .+...+.+.+.++...++ .+
T Consensus 182 ~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~---------------~~ 245 (367)
T 3nyt_A 182 FPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE---------------IF 245 (367)
T ss_dssp CTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH---------------TH
T ss_pred CCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH---------------HH
Confidence 899985587 899999778899888876542 245567776666666554 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCC-CCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCC----
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPEL-PSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKH---- 425 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~---- 425 (456)
+...++.++.++.+.+.|++.+ +.+... .+....+ .++.+.++ +.+.+.+.|+++||.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~---------~~~~~~~~-~~~~l~~~L~~~GI~~~~~~~~~~~ 314 (367)
T 3nyt_A 246 EEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVY---------AQYTVRMD-NRESVQASLKAAGVPTAVHYPIPLN 314 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCC---------SSEEEECS-SHHHHHHHHHHHTCCCBCSCSSCGG
T ss_pred HHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceee---------EEEEEEeC-CHHHHHHHHHHCCCceeccCCCccc
Confidence 4455566677778888888775 333222 2211111 12444554 567788889999999987643
Q ss_pred ----CC-C----------CCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 426 ----FG-F----------SPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 426 ----fg-~----------~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
|. . ..+.+|+++.. ++++++.+++.|++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 315 KQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp GSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred cChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 11 0 13479999864 899999999999864
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=192.89 Aligned_cols=272 Identities=11% Similarity=0.102 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|+++++++++. +++++++|+++++.+++.++ .++|| +|+++.|+|+.+...++..|++++.++.
T Consensus 38 ~~~l~~~la~~~~~--------~~~i~~~sgt~al~~~l~~l~~~~gd----~Vi~~~~~~~~~~~~~~~~g~~~~~~~~ 105 (373)
T 3frk_A 38 DKKFEQEFADYCNV--------NYCIGCGNGLDALHLILKGYDIGFGD----EVIVPSNTFIATALAVSYTGAKPIFVEP 105 (373)
T ss_dssp HHHHHHHHHHHHTS--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEETTSCTHHHHHHHHHSCEEEEECE
T ss_pred HHHHHHHHHHHhCC--------CeEEEeCCHHHHHHHHHHHcCCCCcC----EEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 48999999999963 48899999999999999999 88999 9999999999999999999999887665
Q ss_pred C-------cccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC-CCCCCCCCCcEEEecC
Q 012785 221 D-------AKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d-------~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~~~~~~i~i~S~ 284 (456)
| .+.++. .++++++ |+||||...+ ++|+++|+++|+|++|..... .........++++.||
T Consensus 106 ~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~ 182 (373)
T 3frk_A 106 DIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSF 182 (373)
T ss_dssp ETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEEC
T ss_pred cccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeC
Confidence 4 344443 2566666 7889999866 489999999999999984222 1111111136889998
Q ss_pred c--cccCCCCceEEEEEEeCHHHHHHHHHHHhhc------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 285 S--KSTGHAGTRIGWALVKDMEVAKKMTKYIELN------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 285 S--K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
| |.++.+| +.|+++++++++.++++...... ++..+.+.+.++...++ .+
T Consensus 183 ~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~---------------~~ 246 (373)
T 3frk_A 183 YPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLK---------------YL 246 (373)
T ss_dssp CTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHH---------------TH
T ss_pred cCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHH---------------HH
Confidence 8 8876325 48999987778888887765421 22235544444333332 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCC-CCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPEL-PSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~- 428 (456)
++..++.++..+.+.+.|++++ +.+... .+....+ ..+.+..+ +.+.+.+.|+++||.++++.....
T Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~---------~~~~~~~~-~~~~l~~~L~~~gI~v~~~~~~~~~ 315 (373)
T 3frk_A 247 DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVW---------YTFVIRSE-KRDELQKYLNNNGIGTLIHYPIPIH 315 (373)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCC---------SSEEEEES-SHHHHHHHHHHTTBCCBCSCSSCGG
T ss_pred HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceee---------EEEEEEeC-CHHHHHHHHHHCCCCcccCcCCccc
Confidence 4556666677777777777766 444322 1121110 01233333 567788899999999997652110
Q ss_pred ---------------------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 ---------------------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ---------------------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..+.+|+++.. ++++++.+++.|+++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 316 LQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp GSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred cChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 01679999874 8999999999998864
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-21 Score=192.43 Aligned_cols=272 Identities=13% Similarity=0.051 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD 221 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 221 (456)
.+|+++++++++. ++|++|+|+++++++++.++ .++|| +|+++.|+|+.+...++..|++++.++.|
T Consensus 35 ~~l~~~la~~~~~--------~~v~~~~ggt~al~~~~~~l~~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 102 (394)
T 1o69_A 35 NRFEQSVKDYSKS--------ENALALNSATAALHLALRVAGVKQDD----IVLASSFTFIASVAPICYLKAKPVFIDCD 102 (394)
T ss_dssp HHHHHHHHHHHCC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCGGGTHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHcCCCCCC----EEEECCCccHHHHHHHHHcCCEEEEEEeC
Confidence 8999999999952 58999999999999999999 88999 99999999999999999999998877654
Q ss_pred ------cccccc---C---CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCC-CCCCCCCCCCCCCcEEEec
Q 012785 222 ------AKRFNK---D---GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYY-WPQYTSITYPADHDLMLFT 283 (456)
Q Consensus 222 ------~~~l~~---~---~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~-~~~~~~~~~~~~~~i~i~S 283 (456)
.+.++. . ++++|++++ |||...+ ++|+++|+++|+||+|. +..+.......-..+.+.|
T Consensus 103 ~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s 179 (394)
T 1o69_A 103 ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYS 179 (394)
T ss_dssp TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEE
Confidence 333432 1 578888864 8997654 38999999999999998 3222221100101366777
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc--------------CChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG--------------VSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~--------------~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
|||..+++|.|+||++++++++++++.........+ .+++...++...+ ++
T Consensus 180 ~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l---------------~~ 244 (394)
T 1o69_A 180 YNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM---------------EV 244 (394)
T ss_dssp CCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH---------------TT
T ss_pred EeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH---------------HH
Confidence 755555567899999996588998888764322111 2333333322222 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc--eEEeecCc-----------------------
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA--FAWLKCEQ----------------------- 404 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~--f~~~~~~~----------------------- 404 (456)
+++..++++++++.+.+.|++. +.+..+.... .++ .+++.++.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY--FSFLDELENS----------RSNRWLSTALINFDKNELNACQKDINISQKNITLHP 312 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTE----------ECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccCCCCCC----------cceeEEEEEEecchhhcccccccccccccccccccc
Confidence 5567788888899999999875 3333221000 011 25666652
Q ss_pred cHHHHHHHHHhCCEEeecCCCC---CC--CC--------------CeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 405 EIEDCESFLKGNKILTRSGKHF---GF--SP--------------KYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 405 ~~~~~~~~l~~~gI~v~pg~~f---g~--~~--------------~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+.+.+.+.|.++||.+++|... .. .. ..+|+... .++|+++.+++.|+++++
T Consensus 313 ~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 313 KISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 4567888889999999998422 00 00 23444433 289999999999998763
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=191.25 Aligned_cols=257 Identities=14% Similarity=0.059 Sum_probs=174.9
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh-hh--hhh--cCCeEeeec-------cCcccccc----CCCeE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP-SI--TDC--VKSRLYKWA-------GDAKRFNK----DGPYI 232 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~-~~--~~~--~g~~~~~~~-------~d~~~l~~----~~~~~ 232 (456)
++|+++++..++.+++++|| +|++++|+|+.+. .. ... .+.+.+.++ +|.+.++. .++++
T Consensus 113 ~~sGs~a~~~a~~~~~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~ 188 (447)
T 3h7f_A 113 PHSGAQANAAVLHALMSPGE----RLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKV 188 (447)
T ss_dssp CSSHHHHHHHHHHHHCCTTC----EEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSE
T ss_pred eCCHHHHHHHHHHHhcCCCC----EEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeE
Confidence 77778999999999999999 9999999998832 21 122 234555544 34444432 26789
Q ss_pred EEEcCCCCCCcccchH---HhhhcCcEEEeeecCCC----CCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHH
Q 012785 233 ELVTSPNNPDGSVRQS---VVNRSGGILVHDLAYYW----PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV 305 (456)
Q Consensus 233 i~v~~P~NPtG~~~~~---l~~~~~~~iI~De~y~~----~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~ 305 (456)
+++++|+||++..+.+ +|+++|+++|+||+|+. .+..+.. ....+++++|+||++ +|+|.||++++ +++
T Consensus 189 i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~~~di~~~s~sK~l--~G~~gG~i~~~-~~~ 264 (447)
T 3h7f_A 189 IIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VPHADVVSTTVHKTL--GGGRSGLIVGK-QQY 264 (447)
T ss_dssp EEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEEEESSGGG--CCCSCEEEEEC-GGG
T ss_pred EEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CCCCcEEEecCCcCC--CCCCeEEEEEC-HHH
Confidence 9999999999986664 88999999999999752 1111111 123468999999987 47899999996 888
Q ss_pred HHHHHHHHhhccCcCC-hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCC
Q 012785 306 AKKMTKYIELNTIGVS-KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GLFSVPELP 380 (456)
Q Consensus 306 ~~~l~~~~~~~~~~~s-~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~ 380 (456)
++.+.........+.+ ...+.++...+... .++.++..++++.++++.+.+.|++. +++.+..+.
T Consensus 265 ~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~ 334 (447)
T 3h7f_A 265 AKAINSAVFPGQQGGPLMHVIAGKAVALKIA----------ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG 334 (447)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT----------TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS
T ss_pred HHHHhhhcCCcccCCccHHHHHHHHHHHHHh----------hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC
Confidence 8888776543344433 33344444445421 13356788889999999999999876 123333210
Q ss_pred CcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCC-CCCCeEEEEec------CChhHHHH
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFG-FSPKYVRISML------DRDENYNL 446 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg-~~~~~iRis~~------~~~e~i~~ 446 (456)
+.++++|+++.. +.+.+.+.|+++||.++ |+..++ ..++++||+.. .+++++++
T Consensus 335 ------------~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~ 402 (447)
T 3h7f_A 335 ------------TDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTE 402 (447)
T ss_dssp ------------CSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHH
T ss_pred ------------CCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHH
Confidence 122378888743 56778888999999999 664332 24678999964 36899999
Q ss_pred HHHHHHhhh
Q 012785 447 FVQRLSKIL 455 (456)
Q Consensus 447 ~l~~L~~~l 455 (456)
+++.|++++
T Consensus 403 ~~~~l~~~l 411 (447)
T 3h7f_A 403 VADIIATAL 411 (447)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=197.18 Aligned_cols=284 Identities=16% Similarity=0.110 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~ 218 (456)
.+|+++++++++. ++.|++++| ++++..++.++.++|| +|+++.|+|+.+...+ +..|++++.+
T Consensus 61 ~~l~~~la~~~g~-------~~~v~~~sG-t~A~~~~l~~~~~~gd----~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~ 128 (421)
T 2ctz_A 61 DVLEKRLAALEGG-------KAALATASG-HAAQFLALTTLAQAGD----NIVSTPNLYGGTFNQFKVTLKRLGIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHTC-------SEEEEESSH-HHHHHHHHHHHCCTTC----EEEECSCCCHHHHHHHHTHHHHTTCEEEEC
T ss_pred HHHHHHHHHHhCC-------CceEEecCH-HHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence 7899999999863 245666665 9999999999999999 9999999999877765 6789998888
Q ss_pred -cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecC-CCCCCCCCCCCCCCcEEEecCccc
Q 012785 219 -AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAY-YWPQYTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 219 -~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y-~~~~~~~~~~~~~~~i~i~S~SK~ 287 (456)
+. |.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++| ... +...+...+.+++++|+||.
T Consensus 129 ~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g-~~~~~~~~~~Di~~~s~~K~ 207 (421)
T 2ctz_A 129 SREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGG-YLLRPLAWGAALVTHSLTKW 207 (421)
T ss_dssp CTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGG-TSCCGGGGTCSEEEEETTTT
T ss_pred CCCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccc-ccCCccccCCeEEEECCccc
Confidence 65 4455542 36799999999999999987 4899999999999999 532 21111123568999999999
Q ss_pred cCCCCceEEEEEEeC--HHH----HHHHHH----------------------H----HhhccCcCChHHHHHHHHHHHhh
Q 012785 288 TGHAGTRIGWALVKD--MEV----AKKMTK----------------------Y----IELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~--~~~----~~~l~~----------------------~----~~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
++.+|.|+|++++.+ +++ .+.+.. . ........+++...++...++
T Consensus 208 l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-- 285 (421)
T 2ctz_A 208 VGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME-- 285 (421)
T ss_dssp TTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT--
T ss_pred ccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcc--
Confidence 998999999998852 111 112211 0 011223456655555544444
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc----ccccccC-CCCCceEEeecCccHHHHH
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC----TFLGRAF-EPQPAFAWLKCEQEIEDCE 410 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~----~~~~~~~-~~~~~f~~~~~~~~~~~~~ 410 (456)
.+....++..++.+.+.+.|++++.+.....++.-. ....+.. ...+..+.+.+++..+...
T Consensus 286 -------------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~ 352 (421)
T 2ctz_A 286 -------------TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAK 352 (421)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHH
T ss_pred -------------hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHH
Confidence 233344555578888999999887655432111000 0000000 1233456667754323333
Q ss_pred HH---HHhCCEEeecCCCC----------------------CCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 411 SF---LKGNKILTRSGKHF----------------------GFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 411 ~~---l~~~gI~v~pg~~f----------------------g~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.. ++..++.++.|... |..++.||+|++ .|+++++++.|++.++
T Consensus 353 ~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g--~e~~~~li~~l~~al~ 421 (421)
T 2ctz_A 353 RFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG--LEHVEDLKAELKEALA 421 (421)
T ss_dssp HHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC--SSCHHHHHHHHHHHTC
T ss_pred HHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC--CCCHHHHHHHHHHHhC
Confidence 33 44455566665321 123589999984 4688899999988774
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-24 Score=216.52 Aligned_cols=267 Identities=13% Similarity=0.060 Sum_probs=180.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--CCCCCCCcEEEEeCCCCCChhhhhh----hcCC--
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--SQDASEPISVVSAAPYYSSYPSITD----CVKS-- 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--~~gd~~~~~Vlv~~P~y~~~~~~~~----~~g~-- 213 (456)
..+|.+.|++++.. .+.+++++++++|+..+++.+. ..++ +|++.+++|+++...+. ..|+
T Consensus 142 ~~~Lae~L~~~~p~-------~~~v~~~nSGseA~~~Aik~ar~~tgr~----~ii~~~~~yHG~~~~~~sg~~~~g~~~ 210 (465)
T 2yky_A 142 EALFAEAVCDRFPS-------IDLVRFTNSGTEANLMALATATAITGRK----TVLAFDGGYHGGLLNFASGHAPTNAPY 210 (465)
Confidence 47888888888741 3589999999999999998763 3446 89999999998776544 1233
Q ss_pred eEeeec-cCcccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC-C-CCC
Q 012785 214 RLYKWA-GDAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI-T-YPA 275 (456)
Q Consensus 214 ~~~~~~-~d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~-~-~~~ 275 (456)
..+.++ .|.+.++. .++++|+++..+|+||.+.+ ++|+++|+++|+||+|. ...... . ...
T Consensus 211 ~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~ 289 (465)
T 2yky_A 211 HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEML 289 (465)
Confidence 222222 25555543 34567776544667997654 38999999999999999 421111 1 112
Q ss_pred CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH-----HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK-----YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~-----~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
+...-+.||||.+| .|+|+||++++ +++++.+.. .....+++.++++|.++.+.|+.+.+.
T Consensus 290 gv~pDi~t~sK~lg-~G~piG~v~~~-~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~------------ 355 (465)
T 2yky_A 290 GISADLTTLGKYIG-GGMSFGAFGGR-RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR------------ 355 (465)
Confidence 22334669999999 69999999997 889998876 234568899999999999988854332
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc------------c---HHHHHH
Q 012785 351 EFTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ------------E---IEDCES 411 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~------------~---~~~~~~ 411 (456)
...++++++.+.+.+.|++. +.....+..| +++|+.+.+ + ...+.+
T Consensus 356 -~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G--------------~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~ 420 (465)
T 2yky_A 356 -QAASDLSASGDRFRANLNRIAVENQAPLQFTGLG--------------SLGTIHFSRAPIRSAGDVRAADQQLKELFFF 420 (465)
Confidence 23445555555555555543 2111122223 356666532 1 345667
Q ss_pred HHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 412 FLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 412 ~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.+.++||++.|+. |+. +++..+++++++++++|+++++
T Consensus 421 ~ll~~GV~v~p~~-~~~------~s~~~t~edid~~l~~l~~~l~ 458 (465)
T 2yky_A 421 HMLRKGIYLAPRG-MYA------LSLEIADAGRDAFAEALADFIG 458 (465)
Confidence 7889999999975 321 7776799999999999988763
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-21 Score=188.76 Aligned_cols=307 Identities=13% Similarity=0.077 Sum_probs=205.9
Q ss_pred ecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHH-HHHHHHhcCccCCCceEEEccCHHHHHH
Q 012785 99 VDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEV-VRLHKVVGNAITENHHIVVGTGSTQLFQ 177 (456)
Q Consensus 99 l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~ai-a~~~~~~g~~~~~~~~I~~t~G~~~al~ 177 (456)
+..+.|++++++.+.+... .++.+++. ..|.+ . ..+|++++ |++++. .+++++++|+++++.
T Consensus 5 i~~~~p~~~~~~~i~~a~~-~~~~~~~~--~~~~~-~------~~~l~~~~~a~~~g~-------~~~~v~~~sgt~al~ 67 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELK-EIDASHIY--TNYGP-I------NQRFEQTIMSGFFQN-------RGAVTTVANATLGLM 67 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHH-HHHHHTCC--SSSCH-H------HHHHHHHHHHHTSTT-------CSEEEEESCHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHH-HHHHcCCc--ccCCH-H------HHHHHHHHHHHHhCC-------CCeEEEeCCHHHHHH
Confidence 4466899887765544321 22334431 11222 2 37999999 999862 357889999999999
Q ss_pred HHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-------cccccc----CC--CeEEEEcCCCCCCc
Q 012785 178 AALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD-------AKRFNK----DG--PYIELVTSPNNPDG 243 (456)
Q Consensus 178 ~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d-------~~~l~~----~~--~~~i~v~~P~NPtG 243 (456)
+++.++ .++|| +|+++.|+|+.+...+...|++++.+++| .+.++. .+ +++|+ |+||+|
T Consensus 68 ~al~~l~~~~Gd----~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G 140 (377)
T 3ju7_A 68 AAIQLKKRKKGK----YALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFG 140 (377)
T ss_dssp HHHHHHSCTTCC----EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGG
T ss_pred HHHHHcCCCCcC----EEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCC
Confidence 999998 89999 99999999999999999999998877654 333332 24 67765 788999
Q ss_pred ccch-----HHhhhcCcEEEeeecCCCCCC-CCCCC-CCCCcEEEecC--ccccCCCCceEEEEEEeCHHHHHHHHHHHh
Q 012785 244 SVRQ-----SVVNRSGGILVHDLAYYWPQY-TSITY-PADHDLMLFTV--SKSTGHAGTRIGWALVKDMEVAKKMTKYIE 314 (456)
Q Consensus 244 ~~~~-----~l~~~~~~~iI~De~y~~~~~-~~~~~-~~~~~i~i~S~--SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~ 314 (456)
...+ ++|+ +|+++|+|++|..... ..... ..-.++.+.|| +|.++ +| +.|++++++++++++++..+.
T Consensus 141 ~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~ 217 (377)
T 3ju7_A 141 SWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGN 217 (377)
T ss_dssp BCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTB
T ss_pred CccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHh
Confidence 9865 4889 9999999999974321 11111 11124666666 59887 45 789999988999999888764
Q ss_pred hc------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCC
Q 012785 315 LN------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPS 381 (456)
Q Consensus 315 ~~------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g 381 (456)
.. ..+.+.+.+.++...++ .++...++.+++++.+.+.|++++.+... .+..
T Consensus 218 ~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~---------------~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 282 (377)
T 3ju7_A 218 FGFDTNRECTMMGFNCKMSEYAAAIGIATMK---------------KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQK 282 (377)
T ss_dssp TTBCTTSCBCSSCCBCCCCHHHHHHHHHHHH---------------THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCC
T ss_pred cCCCCCCceeeccccCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCC
Confidence 21 34566666555555554 24445556667777778888877643211 1222
Q ss_pred cccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCC--C------CC------------CCCeEEEEecC
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKH--F------GF------------SPKYVRISMLD 439 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~--f------g~------------~~~~iRis~~~ 439 (456)
+.. ....|+.+.+++ +.+.+.+.|+++||.++.+.. + .. ..+.+||++..
T Consensus 283 ~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~ 354 (377)
T 3ju7_A 283 TEA--------VIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWE 354 (377)
T ss_dssp CSC--------BCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCT
T ss_pred CCc--------ceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCC
Confidence 111 111244555553 378899999999999988651 1 10 13479999864
Q ss_pred --ChhHHHHHHHHHHhhh
Q 012785 440 --RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 --~~e~i~~~l~~L~~~l 455 (456)
++++++..++.|++++
T Consensus 355 ~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 355 GMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp TCCHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 8999999999998876
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=199.45 Aligned_cols=264 Identities=15% Similarity=0.063 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.+++ ++. + +++++|+|+++++.+++.+++++|| +|++++|+|+.+...+...|++++.++.
T Consensus 59 ~~~~~~~la~-~g~------~-~~v~~~~G~t~a~~~~~~a~~~~gd----~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 59 ILKSMKQVEK-HSD------Y-DGYFLVNGTTSGILSVIQSFSQKKG----DILMARNVHKSVLHALDISQQEGHFIETH 126 (446)
T ss_dssp HHHHHHHHCS-CTT------E-EEEEESSHHHHHHHHHHHTTTTSSS----CEEECTTCCHHHHHHHHHHTCCEEECEEE
T ss_pred HHHHHHHHHh-cCC------C-ceEEEeCCHHHHHHHHHHHhcCCCC----EEEEecCccHHHHHHHHHcCCeEEEEeCe
Confidence 4788888888 753 2 6899999999999999999999999 9999999999999999999998876655
Q ss_pred -Cc----------cccccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC-CCCC--CCC-CCCCCcEE
Q 012785 221 -DA----------KRFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW-PQYT--SIT-YPADHDLM 280 (456)
Q Consensus 221 -d~----------~~l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~-~~~~--~~~-~~~~~~i~ 280 (456)
|. +.+...+++++++++ +|+||.+.+ ++|+++|+++|+||+|.. ..+. +.. ...+.+++
T Consensus 127 ~~~~~~~~~~~d~~~l~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~ 205 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRLNNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYV 205 (446)
T ss_dssp ECTTTSSEEEEEC-------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEE
T ss_pred eccccCcCCCCCHHHHcCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEE
Confidence 32 223223578888888 566999977 489999999999999985 1121 111 11234699
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHH--HHHHHHhhc-cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAK--KMTKYIELN-TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~--~l~~~~~~~-~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
+.|+||.++ ++.++||++++ +++++ .+....... +...+.....++...++.+.... . +...++.
T Consensus 206 ~~S~~K~l~-~~~g~g~l~~~-~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g-------~---~~~~~~~ 273 (446)
T 2x3l_A 206 VQSFHKTLP-ALTMGSVLYIH-KNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYD-------S---TLFFAKR 273 (446)
T ss_dssp EECHHHHSS-SCTTCEEEEEE-TTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCC-------C---HHHHHHH
T ss_pred EECCccccc-cccccEEEEEc-CCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC-------H---HHHHHHH
Confidence 999999654 44458999997 55433 343332222 33334333333333333222210 0 1133333
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEee-cCCCCCCCCCeEEE
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTR-SGKHFGFSPKYVRI 435 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~-pg~~fg~~~~~iRi 435 (456)
++.++.+.+. ++.+..+.+ ++++|+.+++ +...+.+.|+++||.+. +| .+++|+
T Consensus 274 ~~l~~~l~~~-----g~~~~~~~~-------------~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g------~~~iRi 329 (446)
T 2x3l_A 274 AQLIECLENK-----GFEMLQVDD-------------PLKLLIKYEGFTGHDIQNWFMNAHIYLELAD------DYQALA 329 (446)
T ss_dssp HHHHHHHHHH-----TCEEEECSS-------------TTEEEEECTTSCHHHHHHHHHHTTEEESEEC------SSCEEE
T ss_pred HHHHHHHHHc-----CCEECcCCC-------------CeEEEEEeCCcCHHHHHHHHHHCCCEEEecC------CCEEEE
Confidence 3444444433 233332222 2378888853 56678888888899997 53 468999
Q ss_pred EecC--ChhHHHHHHHHHHhhh
Q 012785 436 SMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~--~~e~i~~~l~~L~~~l 455 (456)
+++. +++++ +++++|++++
T Consensus 330 ~~~~~~t~e~i-~l~~aL~~~~ 350 (446)
T 2x3l_A 330 ILPLWHHDDTY-LFDSLLRKIE 350 (446)
T ss_dssp ECCCCCTTCCC-CHHHHHHHHH
T ss_pred EeecCCCHHHH-HHHHHHHHHH
Confidence 9975 78889 9999998875
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=194.87 Aligned_cols=273 Identities=12% Similarity=-0.001 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHH-HHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGST-QLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~-~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
++++.++++++. +++ +++|+|++ .++.+++.++.. +++ .|++++|.|+.+...++..|++++.++.
T Consensus 137 ~~~~~la~~~g~------~~~-~~~t~g~te~a~~~al~~~~~~~~~~----~vi~~~~~h~s~~~~~~~~G~~~~~v~~ 205 (456)
T 2z67_A 137 KILESFFKQLGL------NVH-AIATPISTGMSISLCLSAARKKYGSN----VVIYPYASHKSPIKAVSFVGMNMRLVET 205 (456)
T ss_dssp HHHHHHHHHTTC------CCE-EEEESSCHHHHHHHHHHHHHHHHCCC----EEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHcCC------CCC-EEEeCcHHHHHHHHHHHHHHHhcCCC----EEEEECCCcHHHHHHHHHcCCCceEEEE
Confidence 455555555542 334 99999999 455545555443 566 8999999999999999999999875543
Q ss_pred ---------Cccccc----c----CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC--CCCC---C
Q 012785 221 ---------DAKRFN----K----DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY--TSIT---Y 273 (456)
Q Consensus 221 ---------d~~~l~----~----~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~--~~~~---~ 273 (456)
|.+.++ . .++.++++++||||||.+.+ ++|+++|+++++|++|..... .+.. .
T Consensus 206 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~ 285 (456)
T 2z67_A 206 VLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAF 285 (456)
T ss_dssp EEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH
T ss_pred eccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhh
Confidence 444432 1 25677888999999999976 489999999999999985432 1110 0
Q ss_pred CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 274 PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 274 ~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
...-++++.|++|.++ .+.++||++++++++++.+.........+.+.+.+.++...+. .+.+++.
T Consensus 286 ~~~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-------------~~~~~~~ 351 (456)
T 2z67_A 286 KYRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-------------SKNYLEL 351 (456)
T ss_dssp TSCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-------------HHHHHHH
T ss_pred CCCCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-------------HHHHHHH
Confidence 1144678999999765 6689999999658887777433211111222444555554443 3567788
Q ss_pred HHHHHHHHHHHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeec--CccHHHHHHHHHhCCE---Eee----
Q 012785 354 NHQMSTRWKQLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKC--EQEIEDCESFLKGNKI---LTR---- 421 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~~~l~~~gI---~v~---- 421 (456)
.++++++++++.+.|++.+ ++.+..++ +++++.+ +.....+.+.|.++|| .+.
T Consensus 352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~---------------~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g 416 (456)
T 2z67_A 352 VKNQKNSKKLLDELLNDLSKKTGGKFLDVE---------------SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTD 416 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCBCCCC---------------CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCEecCCC---------------CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecC
Confidence 8999999999999998873 34444433 2455566 4333567777888876 343
Q ss_pred --cCCCCCC-CCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 422 --SGKHFGF-SPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 422 --pg~~fg~-~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+|.+|.. ..+++|++++ .+++++++++++|+++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~~ 456 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKILL 456 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC--
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHhC
Confidence 2455543 3579999987 389999999999998763
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=190.13 Aligned_cols=285 Identities=12% Similarity=-0.014 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHH-HhcCccCC--CceEEEccCHHHHHHHHHHHhcC--------CC-----CCCCcEEEEeCCCCCChhh
Q 012785 143 PEFAKEVVRLHK-VVGNAITE--NHHIVVGTGSTQLFQAALYALSS--------QD-----ASEPISVVSAAPYYSSYPS 206 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~--~~~I~~t~G~~~al~~~~~~l~~--------~g-----d~~~~~Vlv~~P~y~~~~~ 206 (456)
.++++++++++. ..|.+... ...+++|+|+++++.+++.++.. +| + +|++++ +|..+..
T Consensus 80 ~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~----~vi~~~-~h~~~~~ 154 (452)
T 2dgk_A 80 AAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKP----NLVCGP-VQICWHK 154 (452)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC----EEEESS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----EEEECC-CcHHHHH
Confidence 677788877774 34544321 12599999999999999988754 44 4 899999 9999999
Q ss_pred hhhhcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhc------CcEEEeeecCCC
Q 012785 207 ITDCVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS------GGILVHDLAYYW 265 (456)
Q Consensus 207 ~~~~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~------~~~iI~De~y~~ 265 (456)
.++..|++++.++.|. +.++. .++++|++++|+||||.+.+ ++|+++ ++++++|++|.+
T Consensus 155 ~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~ 234 (452)
T 2dgk_A 155 FARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG 234 (452)
T ss_dssp HHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGG
T ss_pred HHHHcCceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHH
Confidence 9999999998776643 33332 35789999999999999976 478885 999999999985
Q ss_pred CCC---C---CCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHH-HHHHHHHhhc-----c-------CcCChHHH
Q 012785 266 PQY---T---SIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA-KKMTKYIELN-----T-------IGVSKDSQ 325 (456)
Q Consensus 266 ~~~---~---~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~-~~l~~~~~~~-----~-------~~~s~~~q 325 (456)
... . ... ...+-+++..|++| +++.|.++||++++++++. +.+....... . .+...+.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 313 (452)
T 2dgk_A 235 FLAPFVAPDIVWDFRLPRVKSISASGHK-FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQ 313 (452)
T ss_dssp GTHHHHCTTCCCSTTSTTEEEEEEETTT-TTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHH
T ss_pred HHHHhhCccchhhcCCCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHH
Confidence 311 1 111 12233567889999 5668999999999755432 3331100000 0 01134455
Q ss_pred HHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-
Q 012785 326 LRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ- 404 (456)
Q Consensus 326 ~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~- 404 (456)
.++...+. .+.+++..+++.++++++.+.|++++++.+..+... .+..+++.+++++
T Consensus 314 ~aal~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~---------~~~~~~v~f~~~~~ 371 (452)
T 2dgk_A 314 YYEFLRLG-------------REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP---------DEGIPAVCFKLKDG 371 (452)
T ss_dssp HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCT---------TTBSSEEEEEECTT
T ss_pred HHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCC---------CCCeEEEEEEecCc
Confidence 55555443 345778888899999999999998876665432100 0122356666643
Q ss_pred -----cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 405 -----EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 -----~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+...+.+.|.++||.++...... .+.+++|+++.. ++++++.+++.|++++
T Consensus 372 ~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~ 431 (452)
T 2dgk_A 372 EDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASL 431 (452)
T ss_dssp CCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 23678888889999765422111 135689999975 6899999999998764
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=198.70 Aligned_cols=277 Identities=13% Similarity=0.083 Sum_probs=172.2
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC-----C----CCCCcEEEEeCCC
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ-----D----ASEPISVVSAAPY 200 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~-----g----d~~~~~Vlv~~P~ 200 (456)
.|.+..| ..+|+++++++++. +++++|+|+++++.++++++..+ | | +|++..+.
T Consensus 69 ~y~~~~~-----~~~l~~~la~~~~~--------~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d----~Ii~~~~h 131 (467)
T 2oqx_A 69 AYSGSRS-----YYALAESVKNIFGY--------QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK----MVAFSNYF 131 (467)
T ss_dssp CSSSCHH-----HHHHHHHHHHHHCC--------SEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTT----CEEEESSC
T ss_pred eeccCch-----hHHHHHHHHHHhCc--------CcEEEcCCcHHHHHHHHHHHhccccccCCCCccc----eEEecccc
Confidence 4766556 48999999999852 58999999999999999999887 8 8 88877433
Q ss_pred CCChhhhhhhcCCeEee----------------eccCcccccc-------CCCeEEEEcCCCCCC-cccch--------H
Q 012785 201 YSSYPSITDCVKSRLYK----------------WAGDAKRFNK-------DGPYIELVTSPNNPD-GSVRQ--------S 248 (456)
Q Consensus 201 y~~~~~~~~~~g~~~~~----------------~~~d~~~l~~-------~~~~~i~v~~P~NPt-G~~~~--------~ 248 (456)
|..+.......|...+. +.+|.+.++. .++++|++++||||| |.+++ +
T Consensus 132 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~ 211 (467)
T 2oqx_A 132 FDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYS 211 (467)
T ss_dssp CHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHH
T ss_pred cccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHH
Confidence 33333444444554432 1134444432 257899999999998 77765 3
Q ss_pred HhhhcCcEEEeeecCCC----------CCCCCCC--C-C----CCCcEEEecCccccCCC-CceEEEEEEeCH---HHHH
Q 012785 249 VVNRSGGILVHDLAYYW----------PQYTSIT--Y-P----ADHDLMLFTVSKSTGHA-GTRIGWALVKDM---EVAK 307 (456)
Q Consensus 249 l~~~~~~~iI~De~y~~----------~~~~~~~--~-~----~~~~i~i~S~SK~~g~~-G~RiG~l~~~~~---~~~~ 307 (456)
+|+++|+++|+|+++.. ..+.+.. . . ..-++++.|+||.+|++ | ||++++++ +...
T Consensus 212 la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~ 288 (467)
T 2oqx_A 212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG---GLLCMKDDSFFDVYT 288 (467)
T ss_dssp HHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC---EEEEECSGGGHHHHH
T ss_pred HHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc---eEEEecChhHHHHHH
Confidence 89999999999943321 0111111 0 0 11235689999999877 5 78888633 2334
Q ss_pred HHHHHHhhc----cCcC-ChHHHHHHHHHHHhhhCCCCCCCCcchhHH-HHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 308 KMTKYIELN----TIGV-SKDSQLRAAKVLKVVSDSCKPSGSEDECFF-EFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 308 ~l~~~~~~~----~~~~-s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
+++...... ..+. +.....+....+. +++ +...+..+++++.+.+.|++. ++.+. +.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~--------------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~ 352 (467)
T 2oqx_A 289 ECRTLCVVQEGFPTYGGLEGGAMERLAVGLY--------------DGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAG 352 (467)
T ss_dssp HHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EEC
T ss_pred HHHHhhhccCCcccccchhhhHHHHHHHhhH--------------hhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCC
Confidence 444332111 1121 2111111112222 111 123344567788889999887 35555 555
Q ss_pred cccccccccCCCCCceEEeecC----c-c-----HHHHHHHH-HhCCEEeecCCCC--CC----------CCCeEEEEec
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCE----Q-E-----IEDCESFL-KGNKILTRSGKHF--GF----------SPKYVRISML 438 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~----~-~-----~~~~~~~l-~~~gI~v~pg~~f--g~----------~~~~iRis~~ 438 (456)
++ ++|++++ . + ...+.+.| .++||.+.|+..| +. ..+++|++++
T Consensus 353 ~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~ 419 (467)
T 2oqx_A 353 GH-------------AAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP 419 (467)
T ss_dssp SS-------------CEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCC
T ss_pred ce-------------EEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEec
Confidence 55 7888773 1 1 23345556 8999999996543 21 1379999998
Q ss_pred ---CChhHHHHHHHHHHhhh
Q 012785 439 ---DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 439 ---~~~e~i~~~l~~L~~~l 455 (456)
.+++++++++++|++++
T Consensus 420 ~~~~t~e~i~~~~~~l~~~l 439 (467)
T 2oqx_A 420 RATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp TTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999875
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=182.47 Aligned_cols=262 Identities=15% Similarity=0.105 Sum_probs=181.0
Q ss_pred ceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCC--eEeeec---------------cCccc
Q 012785 164 HHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKS--RLYKWA---------------GDAKR 224 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~--~~~~~~---------------~d~~~ 224 (456)
+.|++|+|+++++++++..+ .+|| +|++.+++|+.+. ..++..|. +++.++ .|.+.
T Consensus 52 ~~v~~~~sgt~a~~~~~~~~-~~gd----~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 126 (379)
T 3ke3_A 52 AAVIIPGSGTYGMEAVARQL-TIDE----DCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIET 126 (379)
T ss_dssp EEEEEESCHHHHHHHHHHHH-CTTC----EEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHH
T ss_pred CEEEEcCChhHHHHHHHHhC-CCCC----eEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHH
Confidence 58999999999999998654 6899 9999999998754 34455553 544332 34444
Q ss_pred ccc----CCCeEEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccccCCC
Q 012785 225 FNK----DGPYIELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 225 l~~----~~~~~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~g~~ 291 (456)
++. .++++++++.++||||.+++ ++|+++|+++|+|+++. . ..++. ...+-++++.|++|.++ .
T Consensus 127 l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g-~~~~~~~~~~~d~~~~s~~K~l~-~ 203 (379)
T 3ke3_A 127 AVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G-CVWLDMKELGIDVLISAPQKGWS-S 203 (379)
T ss_dssp HHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T-TCCCCHHHHTCSEEEECTTTTTC-S
T ss_pred HHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccccccccCCCEEEecchhhcC-C
Confidence 432 36788889899999999977 37889999999999987 2 22221 11245799999999886 4
Q ss_pred CceEEEEEEeCHHHHHHHHHHHh-------------------h---ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 292 GTRIGWALVKDMEVAKKMTKYIE-------------------L---NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 292 G~RiG~l~~~~~~~~~~l~~~~~-------------------~---~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
+..+|+++++ +++++.+..... . ...+.+...+.++.++|+.+.+ .-
T Consensus 204 ~~g~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~----------~g 272 (379)
T 3ke3_A 204 TPCAGLVMLS-AAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKE----------IG 272 (379)
T ss_dssp CCCEEEEEEC-HHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHH----------HC
T ss_pred CCceEEEEEC-HHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHH----------hc
Confidence 3459999996 888887764110 0 1125667777777777764321 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC-
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF- 428 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~- 428 (456)
+++.+++++++++.+.+.|++++ +.+..+.+.. .+....+..++......+.|.++||.+.+|..+..
T Consensus 273 ~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~L~~~Gi~v~~g~~~~~~ 341 (379)
T 3ke3_A 273 FDILRDAQWELGNRVRKVLTDKG-IESVAAEGFE----------APGVVVSYTERDDMHKGSAFAEAGLQIAAGVPLKVG 341 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCB----------CSSEEEEECSCHHHHSSHHHHHTTCCCEECCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CEecCCcccc----------CceEEEEccCCcchHHHHHHHHCCeEEeCCcccccc
Confidence 67788888999999999999875 4443332211 01122233332222226678899999999986632
Q ss_pred ---CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 ---SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ---~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..+.+||++.. +++++++++++|++++
T Consensus 342 ~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l 373 (379)
T 3ke3_A 342 EPDNFKTFRLGLFGLDKLTDIDGTVERFEKAL 373 (379)
T ss_dssp CCTTCCEEEEECCSHHHHTCHHHHHHHHHHHH
T ss_pred ccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 36899999864 8899999999998875
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=184.16 Aligned_cols=311 Identities=12% Similarity=0.078 Sum_probs=195.1
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccC-----CCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEcc
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSD-----VRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGT 170 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-----~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~ 170 (456)
...++.|.++...|..+..... ...+ ...|.+ ..|. .....++++.++++++. ++++|++++
T Consensus 66 ~~~~~~g~~~~~~p~~v~~~~~----~~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~la~~~g~------~~~~i~~~~ 132 (438)
T 1wyu_A 66 KAFLGGGVRSHHVPPVVQALAA----RGEF--LTAYTPYQPEVSQGV-LQATFEYQTMIAELAGL------EIANASMYD 132 (438)
T ss_dssp TCCCCSSCCCCCCCHHHHHHHT----SHHH--HHCCSCCSGGGCHHH-HHHHHHHHHHHHHHHTS------SEECSCBSS
T ss_pred ccccCCCccCCcCcHHHHHHHh----cchh--hhcCCCCcchhhhhH-HHHHHHHHHHHHHHhCC------CccceEEeC
Confidence 3567788877776655432210 1122 122333 2231 00023566666666543 345788999
Q ss_pred CHH---HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeeecc-----CccccccCCCeEEEEcCC
Q 012785 171 GST---QLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKWAG-----DAKRFNKDGPYIELVTSP 238 (456)
Q Consensus 171 G~~---~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~-----d~~~l~~~~~~~i~v~~P 238 (456)
|++ +++.+++ ...+|| +|++++|+|+.+...+ +..|++++.++. |.+.+ ..++++|++++|
T Consensus 133 g~taa~ea~~~a~--~~~~gd----~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~i-~~~t~~v~i~~p 205 (438)
T 1wyu_A 133 GATALAEGVLLAL--RETGRM----GVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEV-GEEVGAVVVQNP 205 (438)
T ss_dssp HHHHHHHHHHHHH--HHHTCC----EEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCC-CTTEEEEEEESS
T ss_pred cHHHHHHHHHHHH--hcCCCC----EEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHHh-CCCeEEEEEECC
Confidence 999 5554443 246788 9999999999887655 447999887764 22222 236789999999
Q ss_pred CCCCcccch-----HHhhhcCcEEEeee--c-CCCCCCCCCCCCCCCcEEEecCccccC----CCCceEEEEEEeCHHHH
Q 012785 239 NNPDGSVRQ-----SVVNRSGGILVHDL--A-YYWPQYTSITYPADHDLMLFTVSKSTG----HAGTRIGWALVKDMEVA 306 (456)
Q Consensus 239 ~NPtG~~~~-----~l~~~~~~~iI~De--~-y~~~~~~~~~~~~~~~i~i~S~SK~~g----~~G~RiG~l~~~~~~~~ 306 (456)
||||.+.+ ++|+++|+++|+|- . |.. + ..+...+.+++++| +|.|| +.|.|+||++++ +++.
T Consensus 206 -n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~--~-~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~-~~~~ 279 (438)
T 1wyu_A 206 -NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV--L-KPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATK-KAFV 279 (438)
T ss_dssp -CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT--B-CCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEEC-GGGG
T ss_pred -CCCeEEecHHHHHHHHHHcCCEEEEEechhhccC--c-CCCccCCCCEEEEC-CcccCCCccCCCCCeeEEEEc-HHHH
Confidence 99999876 47899999999662 2 321 1 11112234677877 77654 456699999997 7766
Q ss_pred HHHHHH-------------------------H-hhccCcC---ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHH
Q 012785 307 KKMTKY-------------------------I-ELNTIGV---SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQM 357 (456)
Q Consensus 307 ~~l~~~-------------------------~-~~~~~~~---s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (456)
+.+... + ...+.+. +.+....+...+..+ .++.++++.+++
T Consensus 280 ~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~----------~~~g~~~~~~~~ 349 (438)
T 1wyu_A 280 RQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL----------GPEGLREVALKS 349 (438)
T ss_dssp GGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh----------CHHHHHHHHHHH
Confidence 554210 0 1112222 223332222223321 134577888899
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEe--ecCCCCCCCCCeEEE
Q 012785 358 STRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILT--RSGKHFGFSPKYVRI 435 (456)
Q Consensus 358 ~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v--~pg~~fg~~~~~iRi 435 (456)
+++++++.+.|++++++++..+...+ ..+.++++.+...+.+.|.++||.+ .++..|+ ++++||
T Consensus 350 ~~~~~~l~~~L~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~--~~~lRi 415 (438)
T 1wyu_A 350 VEMAHKLHALLLEVPGVRPFTPKPFF------------NEFALALPKDPEAVRRALAERGFHGATPVPREYG--ENLALF 415 (438)
T ss_dssp HHHHHHHHHHHTTSTTCEECSCSSBC------------SEEEEECSSCHHHHHHHHHHTTCCCCEECCTTSC--SSEEEE
T ss_pred HHHHHHHHHHHhcCCCeEECCCCCeE------------EEEEEeCCCCHHHHHHHHHHCCceeccccccccC--CCeEEE
Confidence 99999999999988656665432211 0233444445677888888899999 7777665 789999
Q ss_pred Eec--CChhHHHHHHHHHHhhhC
Q 012785 436 SML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 436 s~~--~~~e~i~~~l~~L~~~l~ 456 (456)
++. .+++++++++++|+++++
T Consensus 416 s~~~~~t~edi~~~~~~l~~~l~ 438 (438)
T 1wyu_A 416 AATELHEEEDLLALREALKEVLA 438 (438)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EecccCCHHHHHHHHHHHHHHhC
Confidence 997 389999999999998763
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=187.55 Aligned_cols=285 Identities=9% Similarity=0.039 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcC--------CCCC--CCcEEEEeCCCCCChhhhhhhc
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSS--------QDAS--EPISVVSAAPYYSSYPSITDCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------~gd~--~~~~Vlv~~P~y~~~~~~~~~~ 211 (456)
.++++++.+++. ..|.+.. ++++++|+|+++++..++.++.. +|.. ....|+++.+.|+.+...++.+
T Consensus 131 ~~le~~~~~~la~~~g~~~~-~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~ 209 (504)
T 2okj_A 131 VLMEQITLKKMREIVGWSSK-DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL 209 (504)
T ss_dssp HHHHHHHHHHHHHHHTCCSS-SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCC-CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc
Confidence 567777767763 3555432 46899999999999999988753 3400 0016899999999999999988
Q ss_pred CC---eEeeeccC------cccccc---C------CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC
Q 012785 212 KS---RLYKWAGD------AKRFNK---D------GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 212 g~---~~~~~~~d------~~~l~~---~------~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~ 268 (456)
|. +++.++.| .+.++. . ++++|++++|+||||.+.+ ++|+++|+++++|++|.+...
T Consensus 210 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~ 289 (504)
T 2okj_A 210 GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLL 289 (504)
T ss_dssp TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHH
Confidence 77 77766653 344432 1 3688999999999999866 489999999999999985322
Q ss_pred C-----C-CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH-Hhhcc--------------------CcCC
Q 012785 269 T-----S-ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY-IELNT--------------------IGVS 321 (456)
Q Consensus 269 ~-----~-~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~-~~~~~--------------------~~~s 321 (456)
. . +.....-++++.|++|.++.| .++|+++++++++.+..... ..... ....
T Consensus 290 ~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~ 368 (504)
T 2okj_A 290 MSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVD 368 (504)
T ss_dssp GCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCC
T ss_pred hCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCcc
Confidence 1 1 111123468889999998855 78999999855555532211 11110 0113
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC---CCCcccccccccCCCCCceE
Q 012785 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE---LPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 322 ~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~g~~~~~~~~~~~~~~~f~ 398 (456)
.+.+.++.+.+. .+.+++..++..++++++.+.|++.+++++.. |..+. +.
T Consensus 369 ~l~~~a~l~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~-------------v~ 422 (504)
T 2okj_A 369 IFKFWLMWKAKG-------------TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN-------------VC 422 (504)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSC-------------EE
T ss_pred HHHHHHHHHHhh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEE-------------EE
Confidence 566666666554 34577788888999999999999876666653 33332 33
Q ss_pred EeecCcc-----------------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec---CChhHHHHHHHHHHhhh
Q 012785 399 WLKCEQE-----------------IEDCESFLKGNKILTRSGKHFGFSPKYVRISML---DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 399 ~~~~~~~-----------------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~---~~~e~i~~~l~~L~~~l 455 (456)
+...+.. ...+.+.|.++|+.+..+..++...+++|+++. .++++++.++++|++++
T Consensus 423 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 423 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLG 499 (504)
T ss_dssp EEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3322211 245667777888654433334322368999996 38899999999998875
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-20 Score=188.49 Aligned_cols=269 Identities=14% Similarity=0.077 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc--------C-----------------CC---CCCCcE
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS--------S-----------------QD---ASEPIS 193 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~--------~-----------------~g---d~~~~~ 193 (456)
..+|++++++.+...- +. ..++|++++|+++|++.+++++. . +| + +
T Consensus 108 ~~~l~~~la~~l~~~~-~~-~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~----~ 181 (472)
T 1ohv_A 108 PENFVEKLRESLLSVA-PK-GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDY----S 181 (472)
T ss_dssp BTTHHHHHHHTGGGGC-CT-TCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCC----E
T ss_pred HHHHHHHHHHHHHHhC-CC-CcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCC----e
Confidence 3789999998654321 11 24689999999999999998874 1 34 5 9
Q ss_pred EEEeCCCCCChhhhhhhc-CCe-------------Eeeecc------------------Ccccccc---C------CCeE
Q 012785 194 VVSAAPYYSSYPSITDCV-KSR-------------LYKWAG------------------DAKRFNK---D------GPYI 232 (456)
Q Consensus 194 Vlv~~P~y~~~~~~~~~~-g~~-------------~~~~~~------------------d~~~l~~---~------~~~~ 232 (456)
|++.+++|+++...+..+ |.. .++++. |.+.++. . ++++
T Consensus 182 ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 261 (472)
T 1ohv_A 182 ILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAG 261 (472)
T ss_dssp EEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999999999988766433 211 012210 2333322 1 5677
Q ss_pred EEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC--C-CCCCCc--EEEecCccccCCCCceEEEE
Q 012785 233 ELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI--T-YPADHD--LMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 233 i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~--~-~~~~~~--i~i~S~SK~~g~~G~RiG~l 298 (456)
|+++..+|+||.+.+ ++|+++|+++|+||+|.+..+.+. . ...+.. +-+.||||.+ +.| ||+
T Consensus 262 vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~-l~G---G~~ 337 (472)
T 1ohv_A 262 IIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKM-MTG---GFF 337 (472)
T ss_dssp EEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGG-SSE---EEE
T ss_pred EEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEcccc-ccC---Ccc
Confidence 877666888997643 389999999999999986444331 1 111111 3356899995 345 777
Q ss_pred EEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CC-
Q 012785 299 LVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS----GL- 373 (456)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~- 373 (456)
+ + +++. .+.......+++.++++|.++.+.|+.+.+. ...++++++++.+.+.|+++ +.
T Consensus 338 ~-~-~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~-------------~~~~~~~~~~~~l~~~L~~l~~~~~~~ 401 (472)
T 1ohv_A 338 H-K-EEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKRE-------------DLLSNAAHAGKVLLTGLLDLQARYPQF 401 (472)
T ss_dssp E-C-GGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHT-------------THHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred C-c-hhhc-ccccccccCccCccHHHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 6 5 5552 2223334467788999999999988854332 24566777777777777654 21
Q ss_pred ccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHH
Q 012785 374 FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQ 449 (456)
Q Consensus 374 ~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~ 449 (456)
+...++. +.|++++++. ....+.+.|.++||.+.|+ +.++||++++ .++++++++++
T Consensus 402 v~~~~~~--------------g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----g~~~iRi~~~~~~t~e~i~~~~~ 462 (472)
T 1ohv_A 402 ISRVRGR--------------GTFCSFDTPDESIRNKLISIARNKGVMLGGC-----GDKSIRFRPTLVFRDHHAHLFLN 462 (472)
T ss_dssp CEEEEEE--------------TTEEEEECSSHHHHHHHHHHHHHTTEECEEE-----TTTEEEECCCTTCCHHHHHHHHH
T ss_pred EEeecCC--------------ceEEEEEeCChhHHHHHHHHHHHCCeEEecC-----CCCEEEEECCCCCCHHHHHHHHH
Confidence 2212222 3367777754 2456777777899999984 2679999665 48999999999
Q ss_pred HHHhhh
Q 012785 450 RLSKIL 455 (456)
Q Consensus 450 ~L~~~l 455 (456)
+|++++
T Consensus 463 ~l~~~l 468 (472)
T 1ohv_A 463 IFSDIL 468 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=172.25 Aligned_cols=205 Identities=12% Similarity=0.055 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEE--ccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChhh----------hh
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVV--GTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYPS----------IT 208 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~--t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~~----------~~ 208 (456)
..+|++.+|++++. +..+++ ++|+++++.+++.+++++|| +|++++ |.|..+.. .+
T Consensus 61 ~~~Le~~lA~l~g~-------e~alv~p~~~sGt~Ai~~al~all~~GD----~Vl~~~~~~y~~~~~~~~~~g~~~~~l 129 (409)
T 3jzl_A 61 RDTLERVYATVFKT-------EAALVRPQIISGTHAISTVLFGILRPDD----ELLYITGQPYDTLEEIVGIRKQGQGSL 129 (409)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEETTSCSHHHHHHHHHHHHCCTTC----EEEECSSSCCTTHHHHHTSSSSSSSCT
T ss_pred HHHHHHHHHHHhCC-------CcEEEECCCccHHHHHHHHHHHhcCCCC----EEEEeCCCCcHhHHHHHhcccchhhHH
Confidence 47899999999863 233443 88999999999999999999 999998 99999884 45
Q ss_pred hhcCCeEeeecc------Ccccccc---CCCeEEEEcC----CCCCCcccch-----HHhhh--cCcEEEeeecCCCCCC
Q 012785 209 DCVKSRLYKWAG------DAKRFNK---DGPYIELVTS----PNNPDGSVRQ-----SVVNR--SGGILVHDLAYYWPQY 268 (456)
Q Consensus 209 ~~~g~~~~~~~~------d~~~l~~---~~~~~i~v~~----P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~~~~ 268 (456)
+..|+++..++. |.+.++. .++++|++++ |+||||.+.+ ++|++ +|+++|+|++|..+.+
T Consensus 130 ~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~ 209 (409)
T 3jzl_A 130 KDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE 209 (409)
T ss_dssp GGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS
T ss_pred HHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccc
Confidence 667898887765 4444432 3679999999 9999999876 37889 9999999999986432
Q ss_pred CCCCCCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhh----ccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 269 TSITYPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIEL----NTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~----~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
..-+...+.+++++|+||.+|.+| .+.||++++ ++++++++..... ...+.+...+.++...++
T Consensus 210 ~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~---------- 278 (409)
T 3jzl_A 210 YQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFF---------- 278 (409)
T ss_dssp SCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH----------
T ss_pred cCCccccCCeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccccccccccccHHHHHHHHHHHh----------
Confidence 111222356799999999998555 446999996 9999999875432 122332222333444343
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
.+...+++..++.+.+.+.|++++.
T Consensus 279 -----~~~~r~~~~~~~a~~la~~L~~~g~ 303 (409)
T 3jzl_A 279 -----LAPHVTAQAIKGARFTAAMLAEFGV 303 (409)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445667778889999999999874
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-18 Score=172.50 Aligned_cols=205 Identities=12% Similarity=0.031 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEE--ccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChh-----------hh
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVV--GTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYP-----------SI 207 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~--t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~-----------~~ 207 (456)
..+|++.+|++++. +..+++ ++|+++++.+++.+++++|| +|++++ |.|+.+. ..
T Consensus 75 ~~~Le~~lA~l~g~-------e~alv~p~~~sGt~Ai~~al~all~pGD----~Vl~~~~~~y~~~~~~~g~~~~~~~~~ 143 (427)
T 3i16_A 75 RDSLDAVYARVFNT-------ESALVRPHFVNGTHALGAALFGNLRPGN----TMLSVCGEPYDTLHDVIGITENSNMGS 143 (427)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEETTCCSHHHHHHHHHHHHCCTTC----EEEESSSSCCGGGHHHHTCSCCCSSCC
T ss_pred HHHHHHHHHHHhCC-------cceEEeCCCccHHHHHHHHHHHHhCCCC----EEEEeCCCccHHHHHHHhccccchHHH
Confidence 47899999999874 233443 78889999999999999999 999999 9999877 44
Q ss_pred hhhcCCeEeeecc------Ccccccc-----CCCeEEEEcC----CCCCCcccch-----HHhhh--cCcEEEeeecCCC
Q 012785 208 TDCVKSRLYKWAG------DAKRFNK-----DGPYIELVTS----PNNPDGSVRQ-----SVVNR--SGGILVHDLAYYW 265 (456)
Q Consensus 208 ~~~~g~~~~~~~~------d~~~l~~-----~~~~~i~v~~----P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~ 265 (456)
++..|+++..++. |.+.++. .++++|++++ |+||||.+.+ ++|++ +|+++|+|++|..
T Consensus 144 l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~ 223 (427)
T 3i16_A 144 LKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGE 223 (427)
T ss_dssp TGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTT
T ss_pred HHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 5667998887775 4444432 4679999999 9999999866 37889 9999999999986
Q ss_pred CCCCCCCCCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCc--CCh-HH-HHHHHHHHHhhhCCCC
Q 012785 266 PQYTSITYPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIG--VSK-DS-QLRAAKVLKVVSDSCK 340 (456)
Q Consensus 266 ~~~~~~~~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~--~s~-~~-q~~a~~~L~~~~~~~~ 340 (456)
+.+...+...+.+|+++|+||.+|.+| .+.||++++ ++++++++........+ .++ +. ...+...+.
T Consensus 224 ~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~------- 295 (427)
T 3i16_A 224 FMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLF------- 295 (427)
T ss_dssp TSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-------
T ss_pred ccccCCccccCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHH-------
Confidence 532222222356799999999998655 577999996 99999998854322222 122 22 333333333
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
.+...+++..+++..+.+.|++++.
T Consensus 296 --------~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3i16_A 296 --------LAPHISMEALKGAILCSRIMELAGF 320 (427)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455677888888999999999874
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-19 Score=179.80 Aligned_cols=284 Identities=11% Similarity=0.009 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHH-HhcCccC------CCceEEEccCHHHHHHHHHHHhcCC---------CCC------CCcEEEEeCCC
Q 012785 143 PEFAKEVVRLHK-VVGNAIT------ENHHIVVGTGSTQLFQAALYALSSQ---------DAS------EPISVVSAAPY 200 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~------~~~~I~~t~G~~~al~~~~~~l~~~---------gd~------~~~~Vlv~~P~ 200 (456)
.++++++++++. ..|.+.. ....+++|+|+++++..++.++... ||- ....|++++++
T Consensus 112 ~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~ 191 (486)
T 1js3_A 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (486)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCC
Confidence 788889988884 4565532 1247899999999999988776421 210 00137889999
Q ss_pred CCChhhhhhhcCCeEeeeccC------ccccccC---C------CeEEEEcCCCCCCcccch-----HHhhhcCcEEEee
Q 012785 201 YSSYPSITDCVKSRLYKWAGD------AKRFNKD---G------PYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHD 260 (456)
Q Consensus 201 y~~~~~~~~~~g~~~~~~~~d------~~~l~~~---~------~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~D 260 (456)
|+.+...++..|++++.++.| .+.++.. + +.+|++++|+||||.+-+ ++|+++|+++++|
T Consensus 192 h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD 271 (486)
T 1js3_A 192 HSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (486)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEe
Confidence 999999999999999887764 3334321 1 248888999999998855 4899999999999
Q ss_pred ecCCCCC-----CCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHH-HHHHH---HHHhh---------------
Q 012785 261 LAYYWPQ-----YTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEV-AKKMT---KYIEL--------------- 315 (456)
Q Consensus 261 e~y~~~~-----~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~-~~~l~---~~~~~--------------- 315 (456)
++|.+.. +.... ...+-+.+..+++|.++.| .++||++++++.. .+.+. .+...
T Consensus 272 ~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 350 (486)
T 1js3_A 272 AAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQ 350 (486)
T ss_dssp CTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSS
T ss_pred hhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccC
Confidence 9998521 22211 1112356678999998855 8999999986654 33331 11100
Q ss_pred --ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCCcccccccccCC
Q 012785 316 --NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPSQFCTFLGRAFE 392 (456)
Q Consensus 316 --~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~~~ 392 (456)
.......+.+.++...+. .+.+++..++..++++++.+.|++.+++++.. |..+
T Consensus 351 ~~~~rr~~~~~~~~al~~~g-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~---------- 407 (486)
T 1js3_A 351 LPLGRRFRSLKMWFVFRMYG-------------VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG---------- 407 (486)
T ss_dssp SCSCCCCTHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSS----------
T ss_pred CCCCCchhHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCcee----------
Confidence 001123455665555554 45677888888999999999999886666643 3322
Q ss_pred CCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 393 PQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 393 ~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
++.+.++. ..+.+.+.|.++|+.+.++..|+ +.+++|+++.. +++++++++++|++++
T Consensus 408 ----~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~t~~di~~~~~~l~~~~ 471 (486)
T 1js3_A 408 ----LVCFRLKGSDGLNEALLERINSARKIHLVPCRLR-GQFVLRFAICSRKVESGHVRLAWEHIRGLA 471 (486)
T ss_dssp ----EEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----EEEEEecChHHHHHHHHHHHHhcCCEEEEEEEEC-CEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 34445542 14567777777786654444443 36799999853 6789999999998764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=175.97 Aligned_cols=286 Identities=10% Similarity=0.035 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceE---EEccCHHHHHHHHHHHhcCC--------CCC-CCcEEEEeCCCCCChhhhhh
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHI---VVGTGSTQLFQAALYALSSQ--------DAS-EPISVVSAAPYYSSYPSITD 209 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I---~~t~G~~~al~~~~~~l~~~--------gd~-~~~~Vlv~~P~y~~~~~~~~ 209 (456)
.++++.+.+++. .+|.+..+ +++ ++|+|+++++.+++.++..+ |+. ...+|+++.++|..+...++
T Consensus 94 ~~le~~~~~~la~l~g~~~~~-~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~ 172 (502)
T 3hbx_A 94 TELQNRCVNMIAHLFNAPLEE-AETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR 172 (502)
T ss_dssp HHHHHHHHHHHHHHTTCCCCS-SCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccc-ccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH
Confidence 567777777764 35554322 233 35999999999998887654 531 11189999999999999999
Q ss_pred hcCCeEeeeccCc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhc------CcEEEeeecCCCC--
Q 012785 210 CVKSRLYKWAGDA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRS------GGILVHDLAYYWP-- 266 (456)
Q Consensus 210 ~~g~~~~~~~~d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~------~~~iI~De~y~~~-- 266 (456)
..|++++.++.|. +.++. .++++|++++|+||||.+.+ ++|+++ |+++++|++|.+.
T Consensus 173 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~ 252 (502)
T 3hbx_A 173 YFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIA 252 (502)
T ss_dssp HTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH
T ss_pred HcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhh
Confidence 9999988776543 33332 35788999999999999876 478888 9999999999842
Q ss_pred -----CCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-hhcc---------C---cCChHHHHHH
Q 012785 267 -----QYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-ELNT---------I---GVSKDSQLRA 328 (456)
Q Consensus 267 -----~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-~~~~---------~---~~s~~~q~~a 328 (456)
.........+-+++..|.+|.++ .+.++||+++.+++......... .... . +...+.|.++
T Consensus 253 p~~~~~~~~~~~~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~a 331 (502)
T 3hbx_A 253 PFLYPELEWDFRLPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQ 331 (502)
T ss_dssp HHHCTTCCCSTTSTTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHH
T ss_pred hhhCcccccccCCCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHH
Confidence 11111112234677889999664 77889999987555432111100 0000 0 1133445555
Q ss_pred HHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----
Q 012785 329 AKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---- 404 (456)
Q Consensus 329 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---- 404 (456)
...+. .+.+....++..++++++.+.|++++.+.+..+. +..+++.+.+++
T Consensus 332 l~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------~~~~~v~f~~~~~~~~ 386 (502)
T 3hbx_A 332 LIRLG-------------HEGYRNVMENCRENMIVLREGLEKTERFNIVSKD------------EGVPLVAFSLKDSSCH 386 (502)
T ss_dssp HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCS------------SSSSEEEEEESSCSSC
T ss_pred HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC------------CCceEEEEEecCCCcC
Confidence 55444 3445677778888888999999998766665431 122366777653
Q ss_pred cHHHHHHHHHhCCEEeecCCCCC--CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 405 EIEDCESFLKGNKILTRSGKHFG--FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 ~~~~~~~~l~~~gI~v~pg~~fg--~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+...+.+.|.++||.+....... .+..++||++.. ++|+++.+++.|++++
T Consensus 387 ~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l 441 (502)
T 3hbx_A 387 TEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVM 441 (502)
T ss_dssp CHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34578889999999986533221 134689999864 8899999999998875
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-18 Score=168.61 Aligned_cols=266 Identities=11% Similarity=-0.009 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-------cCCCCCCCcEEEEeCCCCCChhhhhhhcCCe
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-------SSQDASEPISVVSAAPYYSSYPSITDCVKSR 214 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-------~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~ 214 (456)
..+++++++++++. + ++++++++++++.+++.++ ..+|| +|+++.|+|+.+...++..|++
T Consensus 36 ~~~l~~~la~~~~~-------~-~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~----~Vi~~~~~~~~~~~~~~~~g~~ 103 (390)
T 3b8x_A 36 VKQYETQFAKTFGS-------K-YAVMVSSGSTANLLMIAALFFTKKPRLKKGD----EIIVPAVSWSTTYYPLQQYGLR 103 (390)
T ss_dssp HHHHHHHHHHHHTC-------S-EEEEESCHHHHHHHHHHHTTSSSSCSCCTTC----EEEEESSSCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHCC-------C-cEEEECCHHHHHHHHHHHHHhhhhcCCCCcC----EEEECCCCcHHHHHHHHHcCCE
Confidence 48999999999964 2 5566666668999999998 77888 9999999999999999999999
Q ss_pred EeeeccCc-------ccccc---CCCeEEEEcC-CCCCCcccch---HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEE
Q 012785 215 LYKWAGDA-------KRFNK---DGPYIELVTS-PNNPDGSVRQ---SVVNRSGGILVHDLAYYWPQYTSITYPADHDLM 280 (456)
Q Consensus 215 ~~~~~~d~-------~~l~~---~~~~~i~v~~-P~NPtG~~~~---~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~ 280 (456)
++.++.|. +.++. .++++|++++ ++||. .+. ++|+++|+++|+|++|........ ...+....
T Consensus 104 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~g~~~--~~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~g~~~~ 180 (390)
T 3b8x_A 104 VKFVDIDINTLNIDIESLKEAVTDSTKAILTVNLLGNPN--NFDEINKIIGGRDIILLEDNCESMGATFNN-KCAGTFGL 180 (390)
T ss_dssp EEEECBCTTTCSBCHHHHHHHCCTTEEEEEEECGGGCCC--CHHHHHHHHTTSCCEEEEECTTCTTCEETT-EETTSSSS
T ss_pred EEEEecCccccCcCHHHHHHHhCcCCeEEEEECCccChh--hHHHHHHHHHHcCCEEEEECcCcccCEECC-cccccccc
Confidence 88776653 33322 3578888865 45551 222 489999999999999984221111 11122223
Q ss_pred EecCc----cccCCCCceEEEEEEeCHHHHHHHHHHHhhc-------------------------------cCcCChHHH
Q 012785 281 LFTVS----KSTGHAGTRIGWALVKDMEVAKKMTKYIELN-------------------------------TIGVSKDSQ 325 (456)
Q Consensus 281 i~S~S----K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~-------------------------------~~~~s~~~q 325 (456)
+.+|| |.++ +| +.|+++++++++.++++...... +.+.+.+..
T Consensus 181 ~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a 258 (390)
T 3b8x_A 181 MGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSG 258 (390)
T ss_dssp EEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHH
T ss_pred eEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHH
Confidence 33444 4443 33 45999997667877776654211 111555655
Q ss_pred HHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC--CcccccccccCCCCCceEEeecC
Q 012785 326 LRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP--SQFCTFLGRAFEPQPAFAWLKCE 403 (456)
Q Consensus 326 ~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--g~~~~~~~~~~~~~~~f~~~~~~ 403 (456)
.++...|+ .++...++.+++++.+.+.|++++++.+..+. ..+ ..+++.++
T Consensus 259 a~~l~~l~---------------~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~------------~~~~i~~~ 311 (390)
T 3b8x_A 259 AIGIEQLK---------------KLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSW------------FGFSFIIK 311 (390)
T ss_dssp HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCC------------CEEEEEEC
T ss_pred HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCccc------------EEEEEEec
Confidence 55544443 45567777888888999999887655554321 111 12555554
Q ss_pred ----ccHHHHHHHHHhCCEEeec---CCCCCC---------------------CCCeEEEEecC--ChhHHHHHHHHH
Q 012785 404 ----QEIEDCESFLKGNKILTRS---GKHFGF---------------------SPKYVRISMLD--RDENYNLFVQRL 451 (456)
Q Consensus 404 ----~~~~~~~~~l~~~gI~v~p---g~~fg~---------------------~~~~iRis~~~--~~e~i~~~l~~L 451 (456)
.+.+.+.+.|.++||.+++ |..+.. ..+.|||++.. ++++++.+++.|
T Consensus 312 ~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 312 KDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 1567788889999999987 332111 01369999875 899999988876
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=180.05 Aligned_cols=282 Identities=10% Similarity=0.042 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHh----c---------CCCCCC---CcEEEEeCCCCCChh
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYAL----S---------SQDASE---PISVVSAAPYYSSYP 205 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~---------~~gd~~---~~~Vlv~~P~y~~~~ 205 (456)
.++++.+.+++. ..|.+ +.+.+++|+|+++++..++.++ . .+|... ...|+++.++|..+.
T Consensus 139 ~~le~~~~~~la~~~g~~--~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~ 216 (497)
T 2qma_A 139 TYVEQKVVNWLCDKYDLS--EKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ 216 (497)
T ss_dssp HHHHHHHHHHHHHHTTCC--TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHH
Confidence 677777666664 34443 2368999999999999998874 2 122100 016889999999999
Q ss_pred hhhhhcCC---eEeeecc------Ccccccc----C---CCe--EEEEcCCCCCCcccch-----HHhhhcCcEEEeeec
Q 012785 206 SITDCVKS---RLYKWAG------DAKRFNK----D---GPY--IELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLA 262 (456)
Q Consensus 206 ~~~~~~g~---~~~~~~~------d~~~l~~----~---~~~--~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~ 262 (456)
..++.+|. +++.++. |.+.++. . +++ +|+++.|+||||...+ ++|+++|+++++|++
T Consensus 217 ~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a 296 (497)
T 2qma_A 217 KSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGA 296 (497)
T ss_dssp HHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEET
T ss_pred HHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehh
Confidence 88888876 6766665 4444432 1 233 7888899999999765 489999999999999
Q ss_pred CCCCCCC-C----CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc----C-------------
Q 012785 263 YYWPQYT-S----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG----V------------- 320 (456)
Q Consensus 263 y~~~~~~-~----~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~----~------------- 320 (456)
|.+.... + +......++++.|++|.++.| .++||++++++...+.+.........+ .
T Consensus 297 ~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~ 375 (497)
T 2qma_A 297 YGGALILSSHKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRF 375 (497)
T ss_dssp TGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC--------------------CCSCCC
T ss_pred hhHHHHhCcchHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCch
Confidence 9863221 1 111123468899999988855 699999998665443332110000000 0
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCCcccccccccCCCCCceEE
Q 012785 321 SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP-ELPSQFCTFLGRAFEPQPAFAW 399 (456)
Q Consensus 321 s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~~~~~~f~~ 399 (456)
..+.+.++...+. .+.++...++..++++.+.+.|++.+++.+. ++.+ ++++
T Consensus 376 ~al~~~~~l~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~--------------~~v~ 428 (497)
T 2qma_A 376 DALKVFMTMQNVG-------------PKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSL--------------STVL 428 (497)
T ss_dssp THHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSS--------------SEEE
T ss_pred hHHHHHHHHHHhC-------------HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCc--------------eEEE
Confidence 1222333333222 4567778888899999999999987666553 2322 2466
Q ss_pred eecCcc-------HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec---CChhHHHHHHHHHHhhh
Q 012785 400 LKCEQE-------IEDCESFLKGNKILTRSGKHFGFSPKYVRISML---DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 400 ~~~~~~-------~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~---~~~e~i~~~l~~L~~~l 455 (456)
+.+.+. ...+.+.+.++|+.+.++..+. +.+++|+++. .+++++++++++|++++
T Consensus 429 f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~-g~~~lRis~~~~~~t~edi~~~~~~l~~~~ 493 (497)
T 2qma_A 429 FRATHETADLDELNKALRLEALTRGIAVLGETIVD-GKTALKFTILNPCLTTSDFESLLSKINMLA 493 (497)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEET-TEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEEC-CEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 665321 2356677888899988765553 3578999983 38999999999998875
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-18 Score=169.78 Aligned_cols=204 Identities=12% Similarity=0.027 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEE---ccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChh-----------h
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVV---GTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYP-----------S 206 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~---t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~-----------~ 206 (456)
..+|++.+|++++. +..++ ++|+++++.+++.+++++|| +|++++ |.|..+. .
T Consensus 76 ~~~Le~~lA~l~g~--------e~alv~p~~~sGt~A~~~al~all~pGD----~Vl~~~~~~y~~~~~~~g~~~~~~~~ 143 (427)
T 3hvy_A 76 RDSLDRVYANIFNT--------ESAFVRPHFVNGTHAIGAALFGNLRPND----TMMSICGMPYDTLHDIIGMDDSKKVG 143 (427)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEETTCCSHHHHHHHHHHHTCCTTC----EEEECSSSCCGGGHHHHTCCTTCCSC
T ss_pred HHHHHHHHHHHhCC--------CceEEeCCCCcHHHHHHHHHHHhcCCCC----EEEEeCCCCchhHHHHhccccchhhh
Confidence 47899999999863 34455 78889999999999999999 999999 9999876 4
Q ss_pred hhhhcCCeEeeecc-----Ccccccc-----CCCeEEEEcC----CCCCCcccch-----HHhhh--cCcEEEeeecCCC
Q 012785 207 ITDCVKSRLYKWAG-----DAKRFNK-----DGPYIELVTS----PNNPDGSVRQ-----SVVNR--SGGILVHDLAYYW 265 (456)
Q Consensus 207 ~~~~~g~~~~~~~~-----d~~~l~~-----~~~~~i~v~~----P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~ 265 (456)
.++..|+++..++. |.+.++. .++++|++++ |+||||.+.+ ++|++ +|+++|+|++|..
T Consensus 144 ~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~ 223 (427)
T 3hvy_A 144 SLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGE 223 (427)
T ss_dssp CTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCT
T ss_pred HHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccc
Confidence 45667998887764 5555432 4689999999 9999999866 37888 8999999999986
Q ss_pred CCCCCCCCCCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCc----CChHHHHHHHHHHHhhhCCCC
Q 012785 266 PQYTSITYPADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIG----VSKDSQLRAAKVLKVVSDSCK 340 (456)
Q Consensus 266 ~~~~~~~~~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~----~s~~~q~~a~~~L~~~~~~~~ 340 (456)
..+...+...+.+++++|+||.+|.+| .+.||++++ ++++++++........+ .+...+..+...+.
T Consensus 224 ~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~------- 295 (427)
T 3hvy_A 224 FVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLF------- 295 (427)
T ss_dssp TTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-------
T ss_pred cccCCCCcccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHh-------
Confidence 432222223346799999999998554 466999986 99999998864322222 22222344444443
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
.+...+++..++...+.+.|++++.
T Consensus 296 --------~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3hvy_A 296 --------MAPHVTIEAVKGAVFCARIMELAGF 320 (427)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3345667788888999999998874
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=173.10 Aligned_cols=286 Identities=9% Similarity=0.024 Sum_probs=195.4
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhcC--------------CCCCCCcEE
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALSS--------------QDASEPISV 194 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--------------~gd~~~~~V 194 (456)
.|....+ ..++++++++|+. .+|.+.. ...+++|+|+++++..++.++.. +++ .|
T Consensus 126 ~~~~~p~-----~~~le~~~~~~l~~~~g~~~~-~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~----~v 195 (511)
T 3vp6_A 126 TYEIAPV-----FVLMEQITLKKMREIVGWSSK-DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKL----VL 195 (511)
T ss_dssp CTTTCHH-----HHHHHHHHHHHHHHHHTCCSS-SCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCE----EE
T ss_pred CcccCch-----HHHHHHHHHHHHHHHhCCCCC-CCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCe----EE
Confidence 3554444 3789999999984 4676643 35899999999999988887754 455 89
Q ss_pred EEeCCCCCChhhhhhhcCC---eEeeecc------CccccccC---------CCeEEEEcCCCCCCcccch-----HHhh
Q 012785 195 VSAAPYYSSYPSITDCVKS---RLYKWAG------DAKRFNKD---------GPYIELVTSPNNPDGSVRQ-----SVVN 251 (456)
Q Consensus 195 lv~~P~y~~~~~~~~~~g~---~~~~~~~------d~~~l~~~---------~~~~i~v~~P~NPtG~~~~-----~l~~ 251 (456)
+++.++|+.+...++.+|. +++.++. |.+.++.. .+++|+++.|+||||.+-+ ++|+
T Consensus 196 ~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~ 275 (511)
T 3vp6_A 196 FTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICE 275 (511)
T ss_dssp EEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHH
T ss_pred EECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHH
Confidence 9999999999999999998 7776665 44444321 1788999999999999855 4899
Q ss_pred hcCcEEEeeecCCCCCC-----CCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-hhc--------
Q 012785 252 RSGGILVHDLAYYWPQY-----TSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-ELN-------- 316 (456)
Q Consensus 252 ~~~~~iI~De~y~~~~~-----~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-~~~-------- 316 (456)
++|+++++|++|..... .... ....-++++.+.+|.++.| ..+|+++++++++........ ...
T Consensus 276 ~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~ 354 (511)
T 3vp6_A 276 KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYD 354 (511)
T ss_dssp HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSC
T ss_pred HcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccc
Confidence 99999999999985221 1111 1123367889999998855 678999998666555432110 000
Q ss_pred --------cC----cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC---CCC
Q 012785 317 --------TI----GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE---LPS 381 (456)
Q Consensus 317 --------~~----~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~g 381 (456)
+. ....+...++...+. .+.++++.++..++.+++.+.|++.+++++.. |..
T Consensus 355 ~~~~~~~~~~~~~r~~~al~~~~al~~~g-------------~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~ 421 (511)
T 3vp6_A 355 VSYDTGDKAIQCGRHVDIFKFWLMWKAKG-------------TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH 421 (511)
T ss_dssp GGGCCGGGSSCSSCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSS
T ss_pred cccCccCCCCCCCCchHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCe
Confidence 00 112344444444443 46778888999999999999999887676654 222
Q ss_pred cccccccccCCCCCceEEeec-Ccc-----------------HHHHHHHHHhCCEEeecCCCC-CCCCCeEEEEecC---
Q 012785 382 QFCTFLGRAFEPQPAFAWLKC-EQE-----------------IEDCESFLKGNKILTRSGKHF-GFSPKYVRISMLD--- 439 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~-~~~-----------------~~~~~~~l~~~gI~v~pg~~f-g~~~~~iRis~~~--- 439 (456)
. .+.+.+ +.. ...+.+.|.++|+.+.. ..+ +.+.+++|++++.
T Consensus 422 ~--------------~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~~~~~~lRi~~~~~~~ 486 (511)
T 3vp6_A 422 T--------------NVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQGDKANFFRMVISNPAA 486 (511)
T ss_dssp S--------------CEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEETTEEEEEEECCCCTTC
T ss_pred E--------------EEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeCCceEEEEEEecCCCC
Confidence 2 233322 211 23577778888876554 112 2234589999842
Q ss_pred ChhHHHHHHHHHHhh
Q 012785 440 RDENYNLFVQRLSKI 454 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~ 454 (456)
+.++++.+++.|+++
T Consensus 487 t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 487 TQSDIDFLIEEIERL 501 (511)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 789999999999875
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-17 Score=172.32 Aligned_cols=285 Identities=13% Similarity=0.059 Sum_probs=184.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh-hhhcCCeEeeec-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI-TDCVKSRLYKWA- 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~-~~~~g~~~~~~~- 219 (456)
..++++.+|++++. +..+++++|+++++.+++.+++++|| +|+++.|+|..+... +...|++++.++
T Consensus 175 i~e~e~~lA~~~ga-------e~~i~v~nGtt~an~~ai~al~~pGD----~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~ 243 (730)
T 1c4k_A 175 AVAAEKHAARVYNA-------DKTYFVLGGSSNANNTVTSALVSNGD----LVLFDRNNHKSVYNSALAMAGGRPVYLQT 243 (730)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred HHHHHHHHHHHHCC-------CcEEEECCHHHHHHHHHHHHhcCCCC----EEEEcCCchHHHHHHHHHHCCCEEEEEeC
Confidence 47899999999874 34688999999999999999999999 999999999988887 888899876543
Q ss_pred ----------cCcccc-----cc---CC------C----eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC
Q 012785 220 ----------GDAKRF-----NK---DG------P----YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP 266 (456)
Q Consensus 220 ----------~d~~~l-----~~---~~------~----~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~ 266 (456)
+|.+.+ +. .+ + +++++++| ||+|.+.+ ++|+++++++|+||+|...
T Consensus 244 ~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~ 322 (730)
T 1c4k_A 244 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGY 322 (730)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCG
T ss_pred CccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccc
Confidence 355656 32 12 3 78999999 69999877 4899999999999999631
Q ss_pred -CC-------CCCCC---C--CCCcEEEecCccccCCCCceE-EEEEEeCHHH--------HHHHHHHHhhc-cCcCChH
Q 012785 267 -QY-------TSITY---P--ADHDLMLFTVSKSTGHAGTRI-GWALVKDMEV--------AKKMTKYIELN-TIGVSKD 323 (456)
Q Consensus 267 -~~-------~~~~~---~--~~~~i~i~S~SK~~g~~G~Ri-G~l~~~~~~~--------~~~l~~~~~~~-~~~~s~~ 323 (456)
.+ .++.. . ..++++++|+||++ +|.+. |+++++++.+ ..++....... +.+++..
T Consensus 323 ~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~ 400 (730)
T 1c4k_A 323 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYP 400 (730)
T ss_dssp GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHH
T ss_pred cccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHH
Confidence 11 12211 1 22569999999975 56665 5665654432 23343332222 3344444
Q ss_pred HHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCCCc----c-------------cc
Q 012785 324 SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK-SGLFSVPELPSQ----F-------------CT 385 (456)
Q Consensus 324 ~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~g~----~-------------~~ 385 (456)
...+...+++.+.. +.-....+++.++.+.+++.|++ ++++.+..+... + |-
T Consensus 401 ~iaal~aA~~~l~~----------~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (730)
T 1c4k_A 401 MYAALDVNAAMQEG----------EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW 470 (730)
T ss_dssp HHHHHHHHHHHHSH----------HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhh
Confidence 44443344442211 12233455666777778888877 555555433210 0 00
Q ss_pred ccc--------ccCCCCCce-----EEeecC-------------ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 386 FLG--------RAFEPQPAF-----AWLKCE-------------QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 386 ~~~--------~~~~~~~~f-----~~~~~~-------------~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
.+. ...+...++ +.+..+ .+...+.+.|+++||.+... +...+|++++.
T Consensus 471 ~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~-----~~~~ir~~~s~ 545 (730)
T 1c4k_A 471 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS-----DLNSILFLMTP 545 (730)
T ss_dssp BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----CSSEEEEECCT
T ss_pred ccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----CCCeEEEEeCC
Confidence 000 000011011 344443 14677888999999988752 36788999875
Q ss_pred --ChhHHHHHHHHHHhhh
Q 012785 440 --RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 --~~e~i~~~l~~L~~~l 455 (456)
++++++.+++.|+++.
T Consensus 546 g~t~e~i~~Ll~aL~~i~ 563 (730)
T 1c4k_A 546 AETPAKMNNLITQLLQLQ 563 (730)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 8899999999998764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-16 Score=162.13 Aligned_cols=258 Identities=13% Similarity=0.088 Sum_probs=163.4
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhh--------hhhhcCC--eEeeec-------cCcccccc-
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPS--------ITDCVKS--RLYKWA-------GDAKRFNK- 227 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~--------~~~~~g~--~~~~~~-------~d~~~l~~- 227 (456)
.++++++++++.+++.+++++|| +|++++|.|.++.. .+...|. +.+.++ +|.+.++.
T Consensus 123 ~v~~~sGt~An~~al~al~~pGD----~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~ 198 (490)
T 2a7v_A 123 NVQPYSGSPANLAVYTALLQPHD----RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALT 198 (490)
T ss_dssp ECCCSSHHHHHHHHHHHHCCSCE----ECCC-------------------------------CCBCTTTCSBCHHHHHHH
T ss_pred EEeCCchHHHHHHHHHHHcCCCC----EecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHH
Confidence 34566778999999999999999 99999999865431 1233443 233333 34444432
Q ss_pred ---CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCC-C---CC--CCCCCCCCCCcEEEecCccccCCCCceE
Q 012785 228 ---DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYY-W---PQ--YTSITYPADHDLMLFTVSKSTGHAGTRI 295 (456)
Q Consensus 228 ---~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~-~---~~--~~~~~~~~~~~i~i~S~SK~~g~~G~Ri 295 (456)
.++++|+++.|+||+..-+. ++|+++|+++++|+++. + .+ ..++ ..-+++++|+||++ .|.|.
T Consensus 199 l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~aDiv~~S~hK~l--~Gp~G 273 (490)
T 2a7v_A 199 ARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKTL--RGARS 273 (490)
T ss_dssp HHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGG--CSCSC
T ss_pred HhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CCCCEEEECCcccC--ccccc
Confidence 36789999999999865555 48999999999999975 1 11 1222 13469999999987 45678
Q ss_pred EEEEEeCH--------------HHHHHHHHHHhhccCcCChHH-HHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH
Q 012785 296 GWALVKDM--------------EVAKKMTKYIELNTIGVSKDS-QLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR 360 (456)
Q Consensus 296 G~l~~~~~--------------~~~~~l~~~~~~~~~~~s~~~-q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (456)
|+++++++ ++.+++++.......+.+... ..++..++.... .+.++...+++.++
T Consensus 274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~----------~~~~~~~~~~~~~n 343 (490)
T 2a7v_A 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC----------TPMFREYSLQVLKN 343 (490)
T ss_dssp EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHH----------SHHHHHHHHHHHHH
T ss_pred hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHH
Confidence 99999843 366777666443333333333 333333444221 12346677888899
Q ss_pred HHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCC----CCCCeE
Q 012785 361 WKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFG----FSPKYV 433 (456)
Q Consensus 361 ~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg----~~~~~i 433 (456)
++.+.+.|.+.+ +.+..+. ..++++|+++.. +.+.+.+.|+++||.+..+..++ ..+..|
T Consensus 344 a~~L~~~L~~~G-~~v~~~~------------t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~i 410 (490)
T 2a7v_A 344 ARAMADALLERG-YSLVSGG------------TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGL 410 (490)
T ss_dssp HHHHHHHHHHTT-CEEGGGS------------CSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEE
T ss_pred HHHHHHHHHHcC-cEEecCC------------CCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCce
Confidence 999999999875 4443211 112368888753 46778899999999998654443 245789
Q ss_pred EEEec------CChhHHHHHHHHHHhhh
Q 012785 434 RISML------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 434 Ris~~------~~~e~i~~~l~~L~~~l 455 (456)
||+.. .++++++++++.|.+++
T Consensus 411 Rig~~a~t~~g~~~~d~~~~~~~i~~~l 438 (490)
T 2a7v_A 411 RLGAPALTSRQFREDDFRRVVDFIDEGV 438 (490)
T ss_dssp EEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred EecccccccCCCCHHHHHHHHHHHHHHH
Confidence 99753 27899999999988775
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=169.27 Aligned_cols=285 Identities=13% Similarity=0.078 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHH-HhcCccCCCceEEEccCHHHHHHHHHHHhc-------C-CCCC--CCcEEEEeCCCCCChhhhhhhc
Q 012785 143 PEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQLFQAALYALS-------S-QDAS--EPISVVSAAPYYSSYPSITDCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-------~-~gd~--~~~~Vlv~~P~y~~~~~~~~~~ 211 (456)
.++++.+.+++. ..|.+ ++++++|+|+++++..++.++. + +|+. .+.+|+++.+.|+.+...++..
T Consensus 147 ~~le~~~~~~la~l~g~~---~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~ 223 (515)
T 2jis_A 147 VLMEEEVLRKLRALVGWS---SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL 223 (515)
T ss_dssp HHHHHHHHHHHHHHHTCS---SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCC---CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc
Confidence 455555555552 23433 4689999999999998888763 1 3431 0116889999999999999988
Q ss_pred CC---eEeeeccC------cccccc----C-----CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC
Q 012785 212 KS---RLYKWAGD------AKRFNK----D-----GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY 268 (456)
Q Consensus 212 g~---~~~~~~~d------~~~l~~----~-----~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~ 268 (456)
|. +++.++.| .+.++. . ++++|++++|+||||.+.+ ++|+++|+++++|++|.+...
T Consensus 224 g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~ 303 (515)
T 2jis_A 224 GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVL 303 (515)
T ss_dssp TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHH
Confidence 88 77776654 334432 1 3788999999999999876 489999999999999985322
Q ss_pred C-----C-CCCCCCCcEEEecCccccCCCCceEEEEEEeCH-HHHHHH----HHHHhh--c------cC---------cC
Q 012785 269 T-----S-ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDM-EVAKKM----TKYIEL--N------TI---------GV 320 (456)
Q Consensus 269 ~-----~-~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~-~~~~~l----~~~~~~--~------~~---------~~ 320 (456)
. . +....+-++++.|++|.++.| .++|+++++++ ++.++. ..+... . .. ..
T Consensus 304 ~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~ 382 (515)
T 2jis_A 304 LSQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRV 382 (515)
T ss_dssp GCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCC
T ss_pred hChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcc
Confidence 1 1 111224579999999998744 67999999855 465542 111100 0 00 11
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEe
Q 012785 321 SKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWL 400 (456)
Q Consensus 321 s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~ 400 (456)
..+.+.++.+.+. .+.+++..++..++++++.+.|++.+++++..+... +++.+.
T Consensus 383 ~al~~~~~l~~lg-------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~------------~~v~f~ 437 (515)
T 2jis_A 383 DCLKLWLMWKAQG-------------DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEF------------VNVCFW 437 (515)
T ss_dssp CHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSS------------SEEEEE
T ss_pred cHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCe------------eEEEEE
Confidence 2344555555444 345677888888999999999998866665543211 113332
Q ss_pred ecCc---------c-H-------HHHHHHHHhCCEEeecCCCCCCCCCeEEEEec---CChhHHHHHHHHHHhhhC
Q 012785 401 KCEQ---------E-I-------EDCESFLKGNKILTRSGKHFGFSPKYVRISML---DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 401 ~~~~---------~-~-------~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~---~~~e~i~~~l~~L~~~l~ 456 (456)
..+. + . ..+.+.+.+.|+............+++|++++ .++++++.++++|+++++
T Consensus 438 ~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 438 FVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp ECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2221 1 0 12455666777654321111112468999994 489999999999998753
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=166.80 Aligned_cols=261 Identities=11% Similarity=0.036 Sum_probs=171.2
Q ss_pred CceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCe--------------EeeeccC------
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSR--------------LYKWAGD------ 221 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~--------------~~~~~~d------ 221 (456)
.+.++++++++||++.+++.... .+.. +|+...-+|++....+...... +..++..
T Consensus 125 ~~~v~f~~sGsEA~e~AlklAr~~t~r~---~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~ 201 (456)
T 4atq_A 125 AKRTVLFNSGAEAVENAVKVARLATGRD---AVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREE 201 (456)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCC---EEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCS
T ss_pred CcEEEEeCChHHHHHHHHHHHhhhhcCC---eEEEEecccCCccccccccccCccccccCCCCccccceecccccccccC
Confidence 35799999999999999987633 2222 8999999999987655433211 1111110
Q ss_pred ------cccc-------c----cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCC-
Q 012785 222 ------AKRF-------N----KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYP- 274 (456)
Q Consensus 222 ------~~~l-------~----~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~- 274 (456)
.+.. + ..++.++++..-+.-.|.+.+ ++|+++|+++|.||++.+...++....
T Consensus 202 ~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~ 281 (456)
T 4atq_A 202 NPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAV 281 (456)
T ss_dssp STTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred CCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccc
Confidence 0100 1 124567777554666676654 389999999999999997655543211
Q ss_pred ----CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 275 ----ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 275 ----~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
-..+|+ +++|.+| .|+.+|.+++. +++.+.+.......|++.++++..++.+.|+.+++. +.+
T Consensus 282 e~~gv~PDiv--t~gK~lg-gg~P~~av~~~-~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~---------~l~ 348 (456)
T 4atq_A 282 DHEGVVPDII--TMAKGIA-GGLPLSAITGR-ADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQH---------DLN 348 (456)
T ss_dssp GGTTCCCSEE--EECGGGG-TTSSCEEEEEE-HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHT---------THH
T ss_pred cccCCCCchh--hhhhccc-CcCCceeeEec-HHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhc---------cHH
Confidence 123444 5789998 99999999997 899888877767789999999999999999977653 233
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-----CccccCCCCcccccccccCCCCCceEEeecCc---------cHHHHHHHHHhC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSG-----LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------EIEDCESFLKGN 416 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~l~~~ 416 (456)
++.++.-+..++.|.+..++.+ .+.-.+..|. ++-+++.. ....+...+.++
T Consensus 349 ~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl--------------~~giel~~~~~~~~~~~~~~~v~~~~~~~ 414 (456)
T 4atq_A 349 GRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGA--------------MLAIELVQPGSKEPNAELTKAVAAACLKE 414 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETT--------------EEEEEEBCTTSCCBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecce--------------EEEEEEecCCCCCcCHHHHHHHHHHHHHC
Confidence 3333333333333344333322 1222233343 34555421 134577888899
Q ss_pred CEEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhhC
Q 012785 417 KILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l~ 456 (456)
||++.++. ...+.|||.- ..+++++++++++|.+.|+
T Consensus 415 Gvl~~~~g---~~~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 415 GVIILTCG---TYGNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp TEECEEEC---TTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEecC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99998743 3357899884 3489999999999998763
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=160.87 Aligned_cols=206 Identities=12% Similarity=0.016 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeC-CCCCChhhhh----------hhc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAA-PYYSSYPSIT----------DCV 211 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~-P~y~~~~~~~----------~~~ 211 (456)
.++++.++++++. ... ..+++++ ++++++..++.+++++|| +|++++ |.|..+...+ +..
T Consensus 68 ~~l~~~la~~~g~---~~~-~~~i~~~-sGt~Ai~~al~al~~~Gd----~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~ 138 (431)
T 3ht4_A 68 DTLEKVYADVFGA---EAG-LVRPQII-SGTHAISTALFGILRPGD----ELLYITGKPYDTLEEIVGVRGKGVGSFKEY 138 (431)
T ss_dssp HHHHHHHHHHTTC---SEE-CCBTTSC-SHHHHHHHHHHTTCCTTC----EEEECSSSCCTTHHHHTTSSSCSSSCSGGG
T ss_pred HHHHHHHHHHhCC---Ccc-cccceee-CHHHHHHHHHHHhCCCCC----EEEEeCCCCchhHHHHHhhcccccchHHHc
Confidence 4555555555532 211 1133355 568999999999999999 999998 9999988554 457
Q ss_pred CCeEeeecc------Ccccccc---CCCeEEEEc-CCCCCCcccch--------HHhhh--cCcEEEeeecCCCCCCCCC
Q 012785 212 KSRLYKWAG------DAKRFNK---DGPYIELVT-SPNNPDGSVRQ--------SVVNR--SGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 212 g~~~~~~~~------d~~~l~~---~~~~~i~v~-~P~NPtG~~~~--------~l~~~--~~~~iI~De~y~~~~~~~~ 271 (456)
|++++.++. |.+.++. .++++|+++ +||||+|...+ ++|++ +|+++|+||+|....+..-
T Consensus 139 G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~ 218 (431)
T 3ht4_A 139 NIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE 218 (431)
T ss_dssp TCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC
T ss_pred CCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC
Confidence 888887776 4455543 367899888 59999999876 37899 9999999999986543222
Q ss_pred CCCCCCcEEEecCccccCC-CCceEEEEEEeCHHHHHHHHHHHhhccC----cCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 272 TYPADHDLMLFTVSKSTGH-AGTRIGWALVKDMEVAKKMTKYIELNTI----GVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 272 ~~~~~~~i~i~S~SK~~g~-~G~RiG~l~~~~~~~~~~l~~~~~~~~~----~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
+...+.+++++|+||.+|. .+...||++++ +++++.++........ +.+...+.++...+.
T Consensus 219 ~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~------------- 284 (431)
T 3ht4_A 219 PCHVGADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF------------- 284 (431)
T ss_dssp GGGTTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH-------------
T ss_pred ccccCCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCccHHHHHHHHhHhh-------------
Confidence 2223457999999999752 22344999996 9999998876543222 222222333344333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKSGL 373 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~~~ 373 (456)
.+...+++..++.+.+.+.|++++.
T Consensus 285 --~~~~~~~~~~~~a~~l~~~L~~~g~ 309 (431)
T 3ht4_A 285 --LAPHVAGQALKGAIFTAAFLEKLGM 309 (431)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --hHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 2345567778888899999998763
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=167.82 Aligned_cols=267 Identities=13% Similarity=0.034 Sum_probs=173.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcC------C
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVK------S 213 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g------~ 213 (456)
..+|.+.|++++. ..+.+.++++++||...+++.... ..+ +|+..+-+|++....+.... .
T Consensus 129 ~~~lae~l~~~~p-------~~~~v~f~~SGsEA~e~AiklAr~~tgr~----~ii~~~~~yHG~t~~~~~~~~~~~~~~ 197 (454)
T 4ao9_A 129 EGRLARLICERFP-------QIEQLRFTNSGTEANLMALTAALHFTGRR----KIVVFSGGYHGGVLGFGARPSPTTVPF 197 (454)
T ss_dssp HHHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHTCC----EEEEETTCBCSTTCBBSSSBCTTSCCS
T ss_pred HHHHHHHHHHhCC-------CCCEEEEeCchHHHHHHHHHHHHhcccCC----eEEEEeCCcCCccccccccccCccCCC
Confidence 3677777777663 246899999999999999987743 223 89999999998665433221 1
Q ss_pred eEeeecc-Ccccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC----
Q 012785 214 RLYKWAG-DAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY---- 273 (456)
Q Consensus 214 ~~~~~~~-d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~---- 273 (456)
....++. |.+.++. .++.+|++...+.-.|.+.+ ++|+++|+++|.||++.+ .++...
T Consensus 198 ~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~ 275 (454)
T 4ao9_A 198 DFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANK 275 (454)
T ss_dssp EEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHH
T ss_pred CcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhc
Confidence 1122222 4444332 24566777544666787765 389999999999999974 222111
Q ss_pred -CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH----HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh
Q 012785 274 -PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY----IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC 348 (456)
Q Consensus 274 -~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~----~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~ 348 (456)
.-..+| .+++|.+| .|+.+|.+++. +++++.+... ....|++.++++..++.+.|+.+.+ ++
T Consensus 276 ~gv~PDi--~t~gK~lg-gG~Piga~~~~-~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~---------~~ 342 (454)
T 4ao9_A 276 LGIRSDL--TTLGKYIG-GGMSFGAFGGR-ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT---------PE 342 (454)
T ss_dssp HTCCCSE--EEEEGGGG-TTSSCEEEEEC-HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC---------HH
T ss_pred cCCCCcE--EEeccccC-CCCcceeeeeH-HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc---------cC
Confidence 112234 46899999 89999999997 8888877542 2345788999999999999986643 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec-C-----------cc---HHHHHHHH
Q 012785 349 FFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC-E-----------QE---IEDCESFL 413 (456)
Q Consensus 349 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~-~-----------~~---~~~~~~~l 413 (456)
.+++..+.-+..++.|.+.+++.+.....+..|.+ +.+.+ + .+ ...+...+
T Consensus 343 ~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m--------------~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l 408 (454)
T 4ao9_A 343 AAGALAERGEALRARLNALCANEGVAMQFTGIGSL--------------MNAHFVQGDVRSSEDLAAVDGRLRQLLFFHL 408 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTE--------------EEEESCCSCCCSGGGGTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceE--------------EEEEEecCCCCCHHHHHhhhHHHHHHHHHHH
Confidence 44444444444444444444444433233334444 22222 0 01 23455677
Q ss_pred HhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 414 KGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 414 ~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.++||++.| .+++.++...+++++++++++|+++|
T Consensus 409 l~~Gv~~~p-------~~~~~~s~~~T~~dId~~l~al~~~l 443 (454)
T 4ao9_A 409 LNEDIYSSP-------RGFVVLSLPLTDADIDRYVAAIGSFI 443 (454)
T ss_dssp HHTTEECCT-------TCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHCCEEEcC-------CCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999987 34556666569999999999999886
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-15 Score=163.11 Aligned_cols=285 Identities=10% Similarity=0.013 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.++++++. ++.+++++|+++++..++.+++++|| +|+++.|+|..+...+...|++++.++.
T Consensus 207 v~~~ee~la~l~G~-------d~~i~~~~Gtt~a~~~~i~al~~~GD----~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~ 275 (755)
T 2vyc_A 207 FGESEKYAARVFGA-------DRSWSVVVGTSGSNRTIMQACMTDND----VVVVDRNCHKSIEQGLMLTGAKPVYMVPS 275 (755)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHHHHCCEEEEECCC
T ss_pred HHHHHHHHHHHhCC-------CceEEECCcHHHHHHHHHHHhcCCCC----EEEECCCchHHHHHHHHHcCCEEEEEeCC
Confidence 35777777777763 35688999999999999999999999 9999999999998889999999876653
Q ss_pred ---------------Ccccccc-----CCC--------eEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-
Q 012785 221 ---------------DAKRFNK-----DGP--------YIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP- 266 (456)
Q Consensus 221 ---------------d~~~l~~-----~~~--------~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~- 266 (456)
|.+.++. .++ +++++++| ||+|.+.+ ++|+++++++|+|++|...
T Consensus 276 ~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 276 RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp BCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred CCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhc
Confidence 3333322 123 38888898 79999977 4899999999999999731
Q ss_pred ----C---CCCCC----C-CCCCcEEEecCccccCCCCce-EEEEEEeCH--HH-HHHHHHHHh-hccCcCChHHHHHHH
Q 012785 267 ----Q---YTSIT----Y-PADHDLMLFTVSKSTGHAGTR-IGWALVKDM--EV-AKKMTKYIE-LNTIGVSKDSQLRAA 329 (456)
Q Consensus 267 ----~---~~~~~----~-~~~~~i~i~S~SK~~g~~G~R-iG~l~~~~~--~~-~~~l~~~~~-~~~~~~s~~~q~~a~ 329 (456)
. ..++. + ..+++|++.|+||++ +|.+ .|+++++++ .+ ..++..... ..+.+++.+...+..
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~ 432 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASND 432 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 11211 1 123567999999975 5666 577777633 12 233433322 223444555444444
Q ss_pred HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC---------ccccCCCCc-------c----------
Q 012785 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL---------FSVPELPSQ-------F---------- 383 (456)
Q Consensus 330 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~---------~~~~~~~g~-------~---------- 383 (456)
++++.+... ..++++++..+..+. +++.|+++++ +.+..+... .
T Consensus 433 aA~~~l~~~------gg~~~~~~~~~~a~~----~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (755)
T 2vyc_A 433 VAVSMMDGN------SGLSLTQEVIDEAVD----FRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKL 502 (755)
T ss_dssp HHHHHHSTH------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHH
T ss_pred HHHHHHHhh------hHHHHHHHHHHHHHH----HHHHHHhccccccccccceeeccCchhccccccccccccccccchh
Confidence 445433221 013444444444444 4444443322 222221100 0
Q ss_pred ---------------cccccccCCC----CCceEEeecCc------------cHHHHHHHHHhCCEEeecCCCCCCCCCe
Q 012785 384 ---------------CTFLGRAFEP----QPAFAWLKCEQ------------EIEDCESFLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 384 ---------------~~~~~~~~~~----~~~f~~~~~~~------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~ 432 (456)
..-|..+... .+.-+.+.+++ +...+.+.|+++||.+... +.+.
T Consensus 503 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~-----~~~~ 577 (755)
T 2vyc_A 503 LTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT-----TDFQ 577 (755)
T ss_dssp HHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE-----CSSE
T ss_pred ccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec-----CCCe
Confidence 0000000000 11223444442 2367888898999887542 4788
Q ss_pred EEEEecC--ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+|++++. ++++++.+++.|+++.
T Consensus 578 v~~~~~~g~t~~~~~~l~~al~~~~ 602 (755)
T 2vyc_A 578 IMFLFSMGVTRGKWGTLVNTLCSFK 602 (755)
T ss_dssp EEEECCTTCCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999875 8899999999988763
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=158.32 Aligned_cols=288 Identities=11% Similarity=-0.029 Sum_probs=195.4
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHH-HhcCccCC-------CceEEEccCHHHHHHHHHHHhcC----------------
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITE-------NHHIVVGTGSTQLFQAALYALSS---------------- 185 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~-------~~~I~~t~G~~~al~~~~~~l~~---------------- 185 (456)
.|....+ ..++++.+++|+. .+|.+... ....++|+|+++++..++.+...
T Consensus 109 ~~~~~p~-----~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~ 183 (481)
T 4e1o_A 109 TWASSPA-----CTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADES 183 (481)
T ss_dssp STTTCHH-----HHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred CcCCCcH-----HHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccc
Confidence 3544444 3799999999985 45665321 12678999999999888877643
Q ss_pred ---CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------CccccccC---------CCeEEEEcCCCCCCcccch
Q 012785 186 ---QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNKD---------GPYIELVTSPNNPDGSVRQ 247 (456)
Q Consensus 186 ---~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~~---------~~~~i~v~~P~NPtG~~~~ 247 (456)
+++ .|++++++|..+...++..|.+++.++. |.+.++.. .+.+++++.++|+||.+-+
T Consensus 184 ~~~~~~----~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~ 259 (481)
T 4e1o_A 184 SLNARL----VAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC 259 (481)
T ss_dssp HHHTTE----EEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred cccCCe----EEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence 345 8999999999999999999999887775 44444321 1567888889999998855
Q ss_pred -----HHhhhcCcEEEeeecCCCCC-----CCCCCCC-CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-hh
Q 012785 248 -----SVVNRSGGILVHDLAYYWPQ-----YTSITYP-ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-EL 315 (456)
Q Consensus 248 -----~l~~~~~~~iI~De~y~~~~-----~~~~~~~-~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-~~ 315 (456)
++|+++|+++++|.+|.... +...... ..-+.+..+.+|.++.| .-+|++++.+++......... ..
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~y 338 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIY 338 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGG
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchh
Confidence 48999999999999998521 1111111 12367888999988755 457888887666543211100 00
Q ss_pred c------------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012785 316 N------------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377 (456)
Q Consensus 316 ~------------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 377 (456)
. +.....+.+.++...+. .+.++++.++..++++++.+.|++.+++++.
T Consensus 339 l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~ 405 (481)
T 4e1o_A 339 LRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-------------VKNLQAHVRHGTEMAKYFESLVRNDPSFEIP 405 (481)
T ss_dssp GCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTCTTEECC
T ss_pred ccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 0 00113455555555554 4567788888999999999999998777765
Q ss_pred CCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCE-EeecCCCCCCCCCeEEEEecC---ChhHHHHHHHH
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKI-LTRSGKHFGFSPKYVRISMLD---RDENYNLFVQR 450 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI-~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~ 450 (456)
.+... +++++.+++ ....+.+.+.++|+ .+.|+... +..++|+++.. +++++++++++
T Consensus 406 ~~~~~-------------~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--g~~~lR~~~~~~~tt~~di~~~~~~ 470 (481)
T 4e1o_A 406 AKRHL-------------GLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQ--DKLIIRFTVTSQFTTRDDILRDWNL 470 (481)
T ss_dssp SCCCS-------------SEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred cCCce-------------eEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEEC--CEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 43322 267777753 24556677777774 44443332 35689999764 67899999999
Q ss_pred HHhhh
Q 012785 451 LSKIL 455 (456)
Q Consensus 451 L~~~l 455 (456)
|++++
T Consensus 471 i~~~~ 475 (481)
T 4e1o_A 471 IRDAA 475 (481)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-15 Score=144.93 Aligned_cols=275 Identities=9% Similarity=0.056 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHhcCCCCCCCcEE-EEeCCCCC-ChhhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYALSSQDASEPISV-VSAAPYYS-SYPSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l~~~gd~~~~~V-lv~~P~y~-~~~~~~~~~g~~~~~~~ 219 (456)
.+.|+.++++++. .++++|++ |.|+|+++++++..+. ++| ++ .+..-.|. .....++..|+++..++
T Consensus 53 ~~~r~~la~ll~~-----~~~~~v~f~t~~~T~a~n~~~~~~~-~~~----~~~~i~~~~~~~~~~~~a~~~G~~v~~~~ 122 (361)
T 3m5u_A 53 FGAQEKAKKLYEL-----NDDYEVLFLQGGASLQFAMIPMNLA-LNG----VCEYANTGVWTKKAIKEAQILGVNVKTVA 122 (361)
T ss_dssp HHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHHC-CSS----CEEEEECSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCC-----CCCceEEEEcCcHHHHHHHHHHhcC-CCC----eEEEEeCCHHHHHHHHHHHHcCCceEEEe
Confidence 4556666776653 12457887 9999999999999988 777 54 23332332 23344566788877665
Q ss_pred cCccc---cc-----cCCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCC
Q 012785 220 GDAKR---FN-----KDGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 220 ~d~~~---l~-----~~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~ 291 (456)
.|.++ +. ..++++|.+++..|.||...+++++. |+++++|.++.-.+ .++. ..+-++++.|-.|.+|.+
T Consensus 123 ~~~~g~~~~~~~~~l~~~t~lv~~~~~e~~tG~~~~~i~~~-~~~~~vD~~q~~g~-~~id-~~~~d~~~~s~~K~~gp~ 199 (361)
T 3m5u_A 123 SSEESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT-KTPLIVDASSDFFS-RKVD-FSNIALFYGGVQKNAGIS 199 (361)
T ss_dssp ECTTTTSCSCCCCCCCTTSSEEEEESEETTTTEECSSCCCC-SSCEEEECGGGTTS-SCCC-CTTEEEEEEETTTTSSCT
T ss_pred cccCcCCCcCChhhcCCCCCEEEEeCCCCCcceeCCccccc-CCEEEEEcccccCC-CCCC-cccCCEEEEechhccCCC
Confidence 54433 11 23578888887788889998877765 99999999887432 2221 113468899999999988
Q ss_pred CceEEEEEEeCHHHHHHHHH--------HH----hhccCc-CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 292 GTRIGWALVKDMEVAKKMTK--------YI----ELNTIG-VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 292 G~RiG~l~~~~~~~~~~l~~--------~~----~~~~~~-~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
| +|+++++ +++.+++.. +. .....+ ++.....++.++|+.+.+. .-++...++.+
T Consensus 200 G--~g~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~---------gG~~~i~~~~~ 267 (361)
T 3m5u_A 200 G--LSCIFIR-KDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQ---------GGLDKVHEKNS 267 (361)
T ss_dssp T--CEEEEEE-HHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTT---------TCHHHHHHHHH
T ss_pred c--cEEEEEc-HHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHc---------cCHHHHHHHHH
Confidence 8 7999997 888776643 11 111223 4555555666667644321 02677888889
Q ss_pred HHHHHHHHHHHhcCCc-cccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEE
Q 012785 359 TRWKQLRMAVQKSGLF-SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVR 434 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iR 434 (456)
+..+++++.|++++++ ....+.. . ..+..+-+.+++ -.+.+...|.++||.+++|... .+.+|
T Consensus 268 ~l~~~l~~~L~~~~g~~~~~~~~~-~---------rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~---~g~iR 334 (361)
T 3m5u_A 268 QKATMLYECIDLSNGFYKGHADKK-D---------RSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRI---LGGIR 334 (361)
T ss_dssp HHHHHHHHHHHTSTTSEEESSCGG-G---------BCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTT---TCSEE
T ss_pred HHHHHHHHHHHHCCCeeeccCCHH-H---------cCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCc---cCeEE
Confidence 9999999999988744 3221111 0 011134445553 1246778888999999987542 24599
Q ss_pred EEecC--ChhHHHHHHHHHHhhh
Q 012785 435 ISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 435 is~~~--~~e~i~~~l~~L~~~l 455 (456)
+|+.. ++|+++.+++.|+++.
T Consensus 335 iS~~~~~t~edId~l~~al~~~~ 357 (361)
T 3m5u_A 335 ASIYNALNLDQVKTLCEFMKEFQ 357 (361)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEccCCCCHHHHHHHHHHHHHHH
Confidence 99875 8999999999999875
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=153.23 Aligned_cols=256 Identities=11% Similarity=0.068 Sum_probs=166.9
Q ss_pred CceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhcCCeE--------------eeecc----
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCVKSRL--------------YKWAG---- 220 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~--------------~~~~~---- 220 (456)
-++|+++++++||++.+++.... .|.....+|+...-+|++....+....... +..+.
T Consensus 128 ~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~ 207 (473)
T 4e3q_A 128 SGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRY 207 (473)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHH
T ss_pred ccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCccccc
Confidence 35899999999999999987531 222112289999999999766554432211 11110
Q ss_pred -C----c--------cccc-------cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCC
Q 012785 221 -D----A--------KRFN-------KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSI 271 (456)
Q Consensus 221 -d----~--------~~l~-------~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~ 271 (456)
+ . +.++ .++..++++..-+.-.|.+.+ ++|+++|+++|.||++.+.+.++.
T Consensus 208 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~ 287 (473)
T 4e3q_A 208 GEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN 287 (473)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc
Confidence 0 0 0011 113456666554665676655 389999999999999998665543
Q ss_pred CC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCC
Q 012785 272 TY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 272 ~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.. .-..+|+ +++|.++ .| +.+|.++++ +++.+.+.... +..|++.++++..++.+.|+.+.+.
T Consensus 288 ~fa~e~~gv~PDi~--t~~K~l~-gG~~Pl~av~~~-~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~ 363 (473)
T 4e3q_A 288 TWGCVTYDFTPDAI--ISSKNLT-AGFFPMGAVILG-PELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNE 363 (473)
T ss_dssp SCHHHHTTCCCSEE--EECGGGG-TTSSCCEEEEEC-HHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHS
T ss_pred hhHHHhcCCCCChH--Hhccccc-CCCCCccccccc-HHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccc
Confidence 21 1223444 5899998 66 999999997 99998886542 3468899999999999999977653
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh---cCCccccCCCCcccccccccCCCCCceEEeecC----------c-
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK---SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----------Q- 404 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----------~- 404 (456)
..++ +.++.-+++.+.|++ .+.+.-.+..|.+ +-+++. .
T Consensus 364 ---------~l~~----~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~--------------~gielv~~~~~~~~~~~~ 416 (473)
T 4e3q_A 364 ---------GLAE----NVRRLAPRFEERLKHIAERPNIGEYRGIGFM--------------WALEAVKDKASKTPFDGN 416 (473)
T ss_dssp ---------SHHH----HHHHHHHHHHHHHHHHTTSTTEEEEEEETTE--------------EEEEECSBTTTTBCCCGG
T ss_pred ---------cHHH----HHHHHHHHHHHHHHHHhcCCCeeEEeecceE--------------EEEEEecCcccccccccc
Confidence 2333 333444445554544 3333333334433 334331 0
Q ss_pred --cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 405 --EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 --~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
....+.+.+.++||+++|. .+.+|++ +..+++++++++++|.+.|
T Consensus 417 ~~~~~~~~~~~~~~Gll~~~~------g~~i~l~PPL~it~~eid~~~~~l~~al 465 (473)
T 4e3q_A 417 LSVSERIANTCTDLGLICRPL------GQSVVLCPPFILTEAQMDEMFDKLEKAL 465 (473)
T ss_dssp GCHHHHHHHHHHHTTEECEEE------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcEEEec------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 1456788889999999983 3578887 4358999999999998876
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=155.58 Aligned_cols=281 Identities=12% Similarity=0.014 Sum_probs=187.9
Q ss_pred CHHHHHHHHHHHH-HhcCccCC------CceEEEccCHHHHHHHHHHHhcC-------------------CCCCCCcEEE
Q 012785 142 EPEFAKEVVRLHK-VVGNAITE------NHHIVVGTGSTQLFQAALYALSS-------------------QDASEPISVV 195 (456)
Q Consensus 142 ~~~lr~aia~~~~-~~g~~~~~------~~~I~~t~G~~~al~~~~~~l~~-------------------~gd~~~~~Vl 195 (456)
..++++.+++|+. ..|.+... ....++|+|+++++..++.+... +++ .|+
T Consensus 111 ~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~----~vi 186 (475)
T 3k40_A 111 CTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL----VGY 186 (475)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE----EEE
T ss_pred HHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe----EEE
Confidence 3789999999984 45654321 13688999999998888877632 234 799
Q ss_pred EeCCCCCChhhhhhhcCCeEeeeccC-----ccccccC---------CCeEEEEcCCCCCCcccch-----HHhhhcCcE
Q 012785 196 SAAPYYSSYPSITDCVKSRLYKWAGD-----AKRFNKD---------GPYIELVTSPNNPDGSVRQ-----SVVNRSGGI 256 (456)
Q Consensus 196 v~~P~y~~~~~~~~~~g~~~~~~~~d-----~~~l~~~---------~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~ 256 (456)
++.++|..+...++..|++++.++.| .+.++.. .+.+++++.++|+||.+-+ ++|+++|++
T Consensus 187 ~s~~~H~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~ 266 (475)
T 3k40_A 187 CSDQAHSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLW 266 (475)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCE
T ss_pred ECCCchHHHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCe
Confidence 99999999999999999999887764 4444321 1567888899999999855 489999999
Q ss_pred EEeeecCCCCC-----CCCCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHH-HHHHH---HHhh-----------
Q 012785 257 LVHDLAYYWPQ-----YTSIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA-KKMTK---YIEL----------- 315 (456)
Q Consensus 257 iI~De~y~~~~-----~~~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~-~~l~~---~~~~----------- 315 (456)
+++|.+|.... +.... ....-+.+..+++|.++.| ..+|++++.+++.. +.+.. +...
T Consensus 267 lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~ 345 (475)
T 3k40_A 267 IHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRH 345 (475)
T ss_dssp EEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC------------------------
T ss_pred EEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCccc
Confidence 99999998521 11111 1112378889999988734 56899988765442 22211 1000
Q ss_pred ccCc----CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccC
Q 012785 316 NTIG----VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAF 391 (456)
Q Consensus 316 ~~~~----~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~ 391 (456)
.+.. ...+.+.++...+. .+.++++.++..++.+++.+.|++.+++++..+...
T Consensus 346 ~~~~~sr~~~~l~l~~al~~~g-------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~--------- 403 (475)
T 3k40_A 346 WQIPLGRRFRALKLWFVLRLYG-------------VENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINM--------- 403 (475)
T ss_dssp ---CCCGGGTHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBT---------
T ss_pred ccccCCCcccHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCce---------
Confidence 0000 12344444444443 455778888899999999999999877776544322
Q ss_pred CCCCceEEeecCc---cHHHHHHHHHhCCE-EeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 392 EPQPAFAWLKCEQ---EIEDCESFLKGNKI-LTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 392 ~~~~~f~~~~~~~---~~~~~~~~l~~~gI-~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
+.+++.+++ ....+.+.+.++|+ .+.|+..+| ..++|++++. ++++++.++++|++++
T Consensus 404 ----~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g--~~~lR~~~~~~~tt~~di~~~~~~i~~~~ 468 (475)
T 3k40_A 404 ----GLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKD--VYFLRMAICSRFTQSEDMEYSWKEVSAAA 468 (475)
T ss_dssp ----TEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETT--EEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----EEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECC--EEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 256666643 24556666666665 455544333 6789999863 7899999999998864
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-14 Score=140.64 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHhcCC--CCCCCcEEEEeCCCCCC--hhhhhhhcCCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYALSSQ--DASEPISVVSAAPYYSS--YPSITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l~~~--gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~ 217 (456)
.+.|+.++++++. .++++|++ |.|+|+++++++..+..+ || +|++..-++.. +...++..|..++.
T Consensus 61 ~~ar~~la~ll~~-----~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd----~v~~~~~g~~~~~~~~~a~~~G~~~~~ 131 (377)
T 3e77_A 61 NNTENLVRELLAV-----PDNYKVIFLQGGGCGQFSAVPLNLIGLKAGR----CADYVVTGAWSAKAAEEAKKFGTINIV 131 (377)
T ss_dssp HHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHHGGGSTTC----EEEECCCSHHHHHHHHHHTTTSEEEEC
T ss_pred HHHHHHHHHHhCC-----CCCCeEEEEcCchHHHHHHHHHhccCCCCCC----eEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 4556666666653 12357888 689999999999999865 88 88766554433 23345556766654
Q ss_pred eccC------cccccc---CCCeEEEEcCCCCCCcccchHHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEecCccc
Q 012785 218 WAGD------AKRFNK---DGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~d------~~~l~~---~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~ 287 (456)
++.| .+.++. .++++|.+++-.|.||.+.+-+++++++++++|-++.-.+. ++. ...+ +++.|--|.
T Consensus 132 ~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pii~~~~~~~~~vD~~q~~g~~-~id~~~~~--~~~~s~~K~ 208 (377)
T 3e77_A 132 HPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSNFLSK-PVDVSKFG--VIFAGAQKN 208 (377)
T ss_dssp SCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSSCCCCTTCCEEEECTTTTTSS-CCCGGGCS--EEEEEGGGT
T ss_pred eccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchhhhccCCCEEEEEcccccCCC-CCchhhcC--EEEEecccc
Confidence 4433 222221 35788888877788899988788889999999998874322 221 2222 578899999
Q ss_pred cCCCCceEEEEEEeCHHHHHHHH----------HH-HhhccCc-CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAKKMT----------KY-IELNTIG-VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~~l~----------~~-~~~~~~~-~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
+|.+| +|+++++ +++.+++. .. ......+ ++.....++.++|+.+.+. .-++.+.+
T Consensus 209 ~gp~G--~g~l~~~-~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~---------GG~~~i~~ 276 (377)
T 3e77_A 209 VGSAG--VTVVIVR-DDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNN---------GGAAAMEK 276 (377)
T ss_dssp TSCTT--CEEEEEE-TTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHT---------THHHHHHH
T ss_pred cCCCc--cEEEEEc-HHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc---------cCHHHHHH
Confidence 99889 6888887 44422111 11 1112233 3444555556666643221 03778888
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cH---HHHHHHHHhCCEEeecCCCCCCC
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EI---EDCESFLKGNKILTRSGKHFGFS 429 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~---~~~~~~l~~~gI~v~pg~~fg~~ 429 (456)
+.++..+++++.|++++++.+....... ..+.-+-+.+++ +. ..+...+.++||.+++|...
T Consensus 277 ~~~~l~~~l~~~L~~~~g~~~~~~~~~~---------rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~--- 344 (377)
T 3e77_A 277 LSSIKSQTIYEIIDNSQGFYVCPVEPQN---------RSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRS--- 344 (377)
T ss_dssp HHHHHHHHHHHHHHTSTTSEECCSCGGG---------BCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTT---
T ss_pred HHHHHHHHHHHHHHhcCCceecCCCHHH---------cCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCc---
Confidence 8999999999999988655532211111 111123444543 11 34566667899999997632
Q ss_pred CCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 430 PKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 430 ~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+.+|+|+.. ++|+++.+++.|++++
T Consensus 345 ~g~iRiS~~~~~t~edId~l~~al~~~~ 372 (377)
T 3e77_A 345 VGGIRASLYNAVTIEDVQKLAAFMKKFL 372 (377)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4569999875 8999999999999875
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-13 Score=132.92 Aligned_cols=273 Identities=9% Similarity=-0.020 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEE-ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVV-GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~-t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~ 218 (456)
..+.|+.++++++. .++++|++ |.|+|+++++++..+..+|| +|++..-++.. ....++..| ++..+
T Consensus 74 ~~~ar~~la~ll~~-----~~~~evif~t~~~T~a~n~ai~~l~~~gd----~v~~~~~~~~~~~~~~~a~~~G-~v~~v 143 (386)
T 3qm2_A 74 AEEAEQDFRDLLNI-----PSNYKVLFCHGGGRGQFAGVPLNLLGDKT----TADYVDAGYWAASAIKEAKKYC-APQII 143 (386)
T ss_dssp CHHHHHHHHHHHTC-----CTTEEEEEEESCTTHHHHHHHHHHCTTCC----EEEEEESSHHHHHHHHHHTTTS-EEEEE
T ss_pred HHHHHHHHHHHhCC-----CCCceEEEEcCCchHHHHHHHHhccCCCC----eEEEEeCCHHHHHHHHHHHHhC-CeEEE
Confidence 57889999999974 12357888 68999999999999999998 87643332222 233455667 76655
Q ss_pred ccC--c-------ccccc---CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEEEe
Q 012785 219 AGD--A-------KRFNK---DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLMLF 282 (456)
Q Consensus 219 ~~d--~-------~~l~~---~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~i~ 282 (456)
+.| . +.++. .++++|.+++-.|.||..+. +++ +|+++++|-++.-.+ .++. ...+ +.+.
T Consensus 144 ~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~--~g~~~~vDa~qs~g~-~pidv~~~~--~~~~ 218 (386)
T 3qm2_A 144 DAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG--PEVVVTADFSSTILS-APLDVSRYG--VIYA 218 (386)
T ss_dssp ECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC--TTCCEEEECTTTTTS-SCCCGGGCS--EEEE
T ss_pred ecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc--CCCEEEEEcccccCC-CCCCccccC--EEEE
Confidence 554 2 22221 36788888877788899733 455 799999999887432 2221 2222 5778
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHH----------HHHh-h-ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchh-H
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMT----------KYIE-L-NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDEC-F 349 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~----------~~~~-~-~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~-~ 349 (456)
|--|.+|.+| +|+++++ +++.+++. .... . ....++.....++.++|+.+. +. -
T Consensus 219 s~hK~lGP~G--~g~l~v~-~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~----------~~gG 285 (386)
T 3qm2_A 219 GAQKNIGPAG--LTLVIVR-EDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLK----------AQGG 285 (386)
T ss_dssp ETTTTTCCTT--EEEEEEE-GGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHH----------HHTH
T ss_pred ecccccCCCc--cEEEEEC-HHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH----------HhcC
Confidence 9999999888 8999987 55422111 1100 0 111233344445555555321 11 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG 427 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg 427 (456)
++...++.++.++++++.|++++........ .. ..+..+-+.+++ -.+.+...|.++||.+++|...
T Consensus 286 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~-~~---------rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~- 354 (386)
T 3qm2_A 286 VAAMHKINQQKAELLYGVIDNSDFYRNDVAQ-AN---------RSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRV- 354 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSEECCBCG-GG---------BCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCH-HH---------cCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCC-
Confidence 7778888999999999999887532221111 00 111234455553 2255666688999999987643
Q ss_pred CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 428 FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 428 ~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+.+|+|+.. ++|+++.+++.|+++.
T Consensus 355 --~~~iRiS~~~~~t~edId~l~~~l~~~~ 382 (386)
T 3qm2_A 355 --VGGMRASIYNAMPIEGVKALTDFMIDFE 382 (386)
T ss_dssp --TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred --cCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 2459999875 8999999999999875
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-13 Score=142.74 Aligned_cols=280 Identities=10% Similarity=0.055 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..++++.+|++++. ++.+++++|++.++..++.+++++|| +|+++.|+|..+...+...|++++.++.
T Consensus 197 i~eaE~~lA~~fGa-------~~a~~v~nGts~An~~ai~al~~pGD----~VLv~r~~H~S~~~~l~lsGa~pv~v~~~ 265 (715)
T 3n75_A 197 HKEAEQYIARVFNA-------DRSYMVTNGTSTANKIVGMYSAPAGS----TILIDRNCHKSLTHLMMMSDVTPIYFRPT 265 (715)
T ss_dssp HHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEESSCCHHHHHHHHHSCCEEEEECCC
T ss_pred HHHHHHHHHHHhCC-------CCceEECcHHHHHHHHHHHHhCCCCC----EEEECCCccHHHHHHHHHcCCEEEEEecc
Confidence 47899999999974 45678899999999999999999999 9999999999999999999999886653
Q ss_pred ---------------Ccccccc-----CCCe---EEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCC--
Q 012785 221 ---------------DAKRFNK-----DGPY---IELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYT-- 269 (456)
Q Consensus 221 ---------------d~~~l~~-----~~~~---~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~-- 269 (456)
|.+.++. .+++ ++++++| ||+|.+.+ ++|++++ +|+||+|... .+.
T Consensus 266 ~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~ 342 (715)
T 3n75_A 266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (715)
T ss_dssp BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGG
T ss_pred ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCc
Confidence 3443432 1233 7889999 99999977 2566553 7899999742 111
Q ss_pred -----CCCCC--CCCc-EEEecCccccCCCCc-eEEEEEEeCHHHHHHHHHHHhhc-cCcCChHHHHHHHHHHHhhhCCC
Q 012785 270 -----SITYP--ADHD-LMLFTVSKSTGHAGT-RIGWALVKDMEVAKKMTKYIELN-TIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 270 -----~~~~~--~~~~-i~i~S~SK~~g~~G~-RiG~l~~~~~~~~~~l~~~~~~~-~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
++... .|.+ ++++|++|+++ |+ -.||+.++++-..+++....... +.++|.+...++..+++.+..
T Consensus 343 ~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~-- 418 (715)
T 3n75_A 343 YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKG-- 418 (715)
T ss_dssp GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSH--
T ss_pred cccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHh--
Confidence 12111 2332 55999999964 43 35888887432233444443333 344555555555555543321
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC------ccccCCC-------------CcccccccccCCC-----CC
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGL------FSVPELP-------------SQFCTFLGRAFEP-----QP 395 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~-------------g~~~~~~~~~~~~-----~~ 395 (456)
..-+..++++.++.+.+++.|++++. +.+..+. ..+..| . .+.. ++
T Consensus 419 --------~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf-~-~~~~~~~~~Dp 488 (715)
T 3n75_A 419 --------NAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGF-K-NIDNEHMYLDP 488 (715)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCC-T-TCCSSSEEECT
T ss_pred --------hccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccc-c-ccccCcccCCC
Confidence 11123344555555555555554421 1111111 000000 0 0000 11
Q ss_pred ceEEeecCc------------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhh
Q 012785 396 AFAWLKCEQ------------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKI 454 (456)
Q Consensus 396 ~f~~~~~~~------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~ 454 (456)
.=+.+.+++ +...+.+.|+++||.+--.+ .++|=+-++ .++++++.+++.|.++
T Consensus 489 ~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d-----~~~vl~l~s~g~~~~~~~~L~~aL~~~ 556 (715)
T 3n75_A 489 IKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG-----PYNLLFLFSIGIDKTKALSLLRALTDF 556 (715)
T ss_dssp TEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE-----TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC-----CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 113444332 24578888999999875422 344444333 3788899998888765
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=154.95 Aligned_cols=197 Identities=11% Similarity=0.031 Sum_probs=132.5
Q ss_pred CeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCC-----CCCcEEEecCccccCCCC-c
Q 012785 230 PYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYP-----ADHDLMLFTVSKSTGHAG-T 293 (456)
Q Consensus 230 ~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~-----~~~~i~i~S~SK~~g~~G-~ 293 (456)
+.++++..- ++..|.... ++|++||+++|.||++.+.+.++-... -..+| .+|||.++ .| +
T Consensus 595 iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi--itlsK~L~-gG~~ 671 (831)
T 4a0g_A 595 VGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDI--ACFAKLLT-GGMV 671 (831)
T ss_dssp EEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSE--EEECGGGG-TTSS
T ss_pred EEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcE--EEEecccc-cCcc
Confidence 456666543 788888764 389999999999999997655442211 11233 47999998 68 8
Q ss_pred eEEEEEEeCHHHHHHHHHH------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHH-HHHHHH
Q 012785 294 RIGWALVKDMEVAKKMTKY------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTR-WKQLRM 366 (456)
Q Consensus 294 RiG~l~~~~~~~~~~l~~~------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~l~~ 366 (456)
++|+++++ +++++.+... ....+++.+++++.++.+.|+.+.+... .+.+.+..+.+++. ++.+.+
T Consensus 672 Plgav~~~-~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l------~~~~~~~~~~l~~~l~~~l~~ 744 (831)
T 4a0g_A 672 PLAVTLAT-DAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET------NHNITSQGKTLRELWDEELVQ 744 (831)
T ss_dssp CCEEEEEC-HHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT------CTTBCTTSSBBCCCSCHHHHH
T ss_pred CcEEEEEC-HHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 9998887542 1346889999999999999987755421 11111111111111 123445
Q ss_pred HHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE
Q 012785 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS 436 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis 436 (456)
.+++.+.+...+..|. ++.+.+.. ....+.+.+.++||.++|+ .+.+|++
T Consensus 745 ~l~~~~~v~~vrg~Gl--------------~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~------g~~lrl~ 804 (831)
T 4a0g_A 745 QISSHSAVQRVVVIGT--------------LFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL------GNVIYLM 804 (831)
T ss_dssp HHHHSTTEEEEEEETT--------------EEEEEEC---------CHHHHHHHHHHHHTTEECCCB------TTEEEEE
T ss_pred HHhhCCCceeEeeccc--------------EEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec------CCEEEEE
Confidence 5666665544554454 45555521 2345777888999999984 4789998
Q ss_pred --ecCChhHHHHHHHHHHhhhC
Q 012785 437 --MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 437 --~~~~~e~i~~~l~~L~~~l~ 456 (456)
+..+++++++++++|.++++
T Consensus 805 pp~~~t~e~id~~~~~l~~~l~ 826 (831)
T 4a0g_A 805 CGPCTSPEICRRLLTKLYKRLG 826 (831)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 44599999999999998764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-08 Score=99.04 Aligned_cols=275 Identities=10% Similarity=0.007 Sum_probs=162.5
Q ss_pred HHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-----
Q 012785 150 VRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG----- 220 (456)
Q Consensus 150 a~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~----- 220 (456)
.+|+...|.+.. ...++++|+|.++.+++.+.+++ ++ +|+++.-++......+...|++++.++.
T Consensus 123 ld~L~~~G~~~~--~~~flVnGsTgg~lamilaa~r~~rpg~d----~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~ 196 (501)
T 3hl2_A 123 LDIIKLAGVHTV--ANCFVVPMATGMSLTLCFLTLRHKRPKAK----YIIWPRIDQKSCFKSMITAGFEPVVIENVLEGD 196 (501)
T ss_dssp HHHHHHTTCTTC--CEEEEESSCHHHHHHHHHHHHHHHCTTCC----EEEEECCCCHHHHHHHHHTTCEEEEECEEEETT
T ss_pred HHHHHHcCCCCC--CcEEEECcHHHHHHHHHHHHcCcccCCCC----EEEEecchHHHHHHHHHHcCCeEEEEeeeeccc
Confidence 456666777753 46889999997776666666553 37 9999999999999999999999875443
Q ss_pred ----Ccccccc----C--CCeEEE-EcCCCCCCccc--ch---HHhhhcCcEEEeeecCCCCC-C-CCCC---CCCC-Cc
Q 012785 221 ----DAKRFNK----D--GPYIEL-VTSPNNPDGSV--RQ---SVVNRSGGILVHDLAYYWPQ-Y-TSIT---YPAD-HD 278 (456)
Q Consensus 221 ----d~~~l~~----~--~~~~i~-v~~P~NPtG~~--~~---~l~~~~~~~iI~De~y~~~~-~-~~~~---~~~~-~~ 278 (456)
|.+.++. . +..+++ .+.+.|-.|.+ +. ++|+++|+++++|+||.... + ..++ ...+ -+
T Consensus 197 ~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 197 ELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp EEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred ccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 3333332 1 233444 43445532332 22 48999999999999998521 1 1111 1123 57
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
+++.|..|.+-+| +.-|.+...|+++.+++..... .+ ..+.++......++.. + .+.++++.++..
T Consensus 277 ~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yP-Gr-~S~Spsldl~~tLL~l---G--------r~Gy~~ll~e~~ 342 (501)
T 3hl2_A 277 AFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYP-GR-ASASPSLDVLITLLSL---G--------SNGYKKLLKERK 342 (501)
T ss_dssp EEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSC-SC-BCSHHHHHHHHHHHHH---H--------HHHHHHHHHHHH
T ss_pred EEEecccccceee-cCceEEEeCCHHHHHHHHHhCC-CC-CCCcHHHHHHHHHHHH---H--------HHHHHHHHHHHH
Confidence 8999999998654 2234444667887777643321 01 1222333233333331 1 455567777777
Q ss_pred HHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCc--eEEeecCc-------cHHHHHHHHHhCCE---E-eecCC-
Q 012785 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA--FAWLKCEQ-------EIEDCESFLKGNKI---L-TRSGK- 424 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~--f~~~~~~~-------~~~~~~~~l~~~gI---~-v~pg~- 424 (456)
+..+++.+.|+++.. .. | .++.....| -+-+.+.. ....+-..|-.++| . |.+|.
T Consensus 343 ela~~L~~~L~~la~--~~---g------e~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~ 411 (501)
T 3hl2_A 343 EMFSYLSNQIKKLSE--AY---N------ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSM 411 (501)
T ss_dssp HHHHHHHHHHHHHHH--TT---T------CCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCC
T ss_pred HHHHHHHHHHHHHHH--hc---C------hhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCc
Confidence 777788888776421 00 0 011111111 23334421 23455555555555 2 35555
Q ss_pred ---------CCCC-----CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 425 ---------HFGF-----SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 425 ---------~fg~-----~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.||. ...|+-++-+. +++|++.++++|.+++
T Consensus 412 ~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~ 458 (501)
T 3hl2_A 412 QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCL 458 (501)
T ss_dssp EEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5664 24578777553 8999999999999876
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-07 Score=92.76 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=161.2
Q ss_pred eEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh--------hhcC--CeEeeeccC-------cccccc
Q 012785 165 HIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT--------DCVK--SRLYKWAGD-------AKRFNK 227 (456)
Q Consensus 165 ~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~--------~~~g--~~~~~~~~d-------~~~l~~ 227 (456)
+|-.-+| ++|...++.+|++||| +|+..+....++..-- ...| .+.+++.+| .+.++.
T Consensus 123 NVQP~SG-s~AN~avy~All~PGD----~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~ 197 (490)
T 3ou5_A 123 NVQPYSG-SPANLAVYTALLQPHD----RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLAL 197 (490)
T ss_dssp ECCCSSH-HHHHHHHHHHHCC-CC----CEECBC----------------------------CBCEETTTTEECHHHHHH
T ss_pred CCCcCCH-HHHHHHHHHHHcCCCC----EEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHH
Confidence 4544455 5888899999999999 9999887766654321 1111 123344433 333332
Q ss_pred ----CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCC------CCCCCCCCCCCCCcEEEecCccccCCCCce
Q 012785 228 ----DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYY------WPQYTSITYPADHDLMLFTVSKSTGHAGTR 294 (456)
Q Consensus 228 ----~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~------~~~~~~~~~~~~~~i~i~S~SK~~g~~G~R 294 (456)
.+|++|+..--.+|-=.-+. ++|++.|.+++.|-++. +....|++. -+|+..|..|+| +|=|
T Consensus 198 ~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~---ADvVTtTTHKTL--rGPr 272 (490)
T 3ou5_A 198 TARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH---ADIVTTTTHKTL--RGAR 272 (490)
T ss_dssp HHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT---CSEEEEESSSTT--CSCS
T ss_pred HHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc---ceEEeccccccc--cCCC
Confidence 38999998665666555554 48999999999999986 222334432 468899999987 6678
Q ss_pred EEEEEEeCH--------------HHHHHHHHHHhhccCcCChHHHHHHHHH-HHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 295 IGWALVKDM--------------EVAKKMTKYIELNTIGVSKDSQLRAAKV-LKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 295 iG~l~~~~~--------------~~~~~l~~~~~~~~~~~s~~~q~~a~~~-L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
-|.+++.++ ++.+++.+.......|.+.....++.++ +... ....++...+++.+
T Consensus 273 GG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea----------~~p~fk~Ya~qVv~ 342 (490)
T 3ou5_A 273 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA----------CTPMFREYSLQVLK 342 (490)
T ss_dssp CEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----------HSHHHHHHHHHHHH
T ss_pred ceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH----------HhHhHHHHHHHHHH
Confidence 899998632 5677887776544555555555544433 3311 13355667788888
Q ss_pred HHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCCCCCCe
Q 012785 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFGFSPKY 432 (456)
Q Consensus 360 ~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg~~~~~ 432 (456)
+.+.|.+.|.+.+ +.+.. |+ .+...+++++.. +.+.+.+.|.+.||.+. |++.-...+..
T Consensus 343 NAkaLA~~L~~~G-~~vvs--Gg----------TdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SG 409 (490)
T 3ou5_A 343 NARAMADALLERG-YSLVS--GG----------TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGG 409 (490)
T ss_dssp HHHHHHHHHHHTT-CEEGG--GS----------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSE
T ss_pred HHHHHHHHHHhCC-Ceeec--CC----------CCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCe
Confidence 9999999999876 44432 21 112257778743 57889999999999885 44421124668
Q ss_pred EEEEec------CChhHHHHHHHHHHhhh
Q 012785 433 VRISML------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~------~~~e~i~~~l~~L~~~l 455 (456)
|||... ..+++++++.+.|.+++
T Consensus 410 iRiGTpa~TtRG~~e~dm~~IA~~I~~~l 438 (490)
T 3ou5_A 410 LRLGAPALTSRQFREDDFRRVVDFIDEGV 438 (490)
T ss_dssp EEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred eEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999953 27888888888877654
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.1e-07 Score=89.71 Aligned_cols=209 Identities=9% Similarity=-0.079 Sum_probs=123.9
Q ss_pred HHHHHHHHHH-HHhcCccCCCceEEEccCHHHHHHHHHHHhcCC----CCCCCcEEEEeCCCCCChhhhhhhcCCeEeee
Q 012785 144 EFAKEVVRLH-KVVGNAITENHHIVVGTGSTQLFQAALYALSSQ----DASEPISVVSAAPYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 144 ~lr~aia~~~-~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~----gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~ 218 (456)
.+.+.+.+++ ...|.+. ....++++|+|.+..+++.+.+.+ ++ .|+++.-++......+..+|++.+.+
T Consensus 98 ~~e~~~~~~~~~~lGlp~--~~~~~lV~GaT~~~~a~~L~aar~~~~~~~----~viv~r~aHkSv~kAl~l~Gl~p~~v 171 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHS--VASCFVVPMATGMSLTLCFLTLRHKRPKAK----YIIWPRIDQKSCFKSMVTAGFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHTCTT--CCEEEEESSCHHHHHHHHHHHHHHHCTTCC----EEEEECCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCC--CceEEEECCHHHHHHHHHHHHcchhhcCCC----EEEEECCcHHHHHHHHHHcCCeeEEE
Confidence 4555555554 4556553 235678888874444444444333 66 89999999999999999999987654
Q ss_pred c---------cCcccccc----C--CCeEEEEcCC-CCCCcccch-----HHhhhcCcEEEeeecCCCCC-C-CCCC-CC
Q 012785 219 A---------GDAKRFNK----D--GPYIELVTSP-NNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-Y-TSIT-YP 274 (456)
Q Consensus 219 ~---------~d~~~l~~----~--~~~~i~v~~P-~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~-~~~~-~~ 274 (456)
+ +|.+.++. . +..++++.+| .+.+|.+-+ ++|+++|+++++|++|.... + ..++ ..
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a 251 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 251 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred EeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHH
Confidence 3 34444432 1 2345555566 445555433 48999999999999998521 1 1111 11
Q ss_pred ---CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 275 ---ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 275 ---~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
..-+.++.|..|.+. .-.-.+++.+.|++..+++..... ....+.++......++. .+ .+-++
T Consensus 252 ~~~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~---~G--------~~g~~ 317 (450)
T 3bc8_A 252 ARVGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLS---LG--------CSGYR 317 (450)
T ss_dssp HHHSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHH---HH--------HHHHH
T ss_pred hcccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHH---HH--------HHHHH
Confidence 234678899999886 444567777777877766644321 11333444333333332 12 34445
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 012785 352 FTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~ 372 (456)
+..+...+..+.+.+.|++++
T Consensus 318 ~~i~~~~~~a~~l~~~l~~~~ 338 (450)
T 3bc8_A 318 KLLKERKEMFVYLSTQLKKLA 338 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 555555555666666666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 456 | ||||
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 1e-116 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 5e-18 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-17 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-12 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 3e-07 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 1e-06 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-06 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 1e-05 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 3e-05 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 2e-04 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 4e-04 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 7e-04 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 0.002 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 0.003 |
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 345 bits (886), Expect = e-116
Identities = 129/376 (34%), Positives = 204/376 (54%), Gaps = 13/376 (3%)
Query: 89 SQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKE 148
S+ +V GD E+YW++ + + +++ W +SYF + + F+ E K
Sbjct: 51 SEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFN--PVSNFISFELEKT 108
Query: 149 VVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPI----SVVSAAPYYSSY 204
+ LH+VVGNA ++ +IV G G TQL + +LS + P VV+ AP+Y +
Sbjct: 109 IKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF 168
Query: 205 PSITDCVKSRLYKWAGDAKRFN---KDGPYIELVTSPNNPDGSVRQSVVNRSGGILVHDL 261
T + Y WAG+A + YIE+VTSPNNP+G +R +V+ G ++D+
Sbjct: 169 REQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIK--GCKSIYDM 226
Query: 262 AYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVS 321
YYWP YT I Y AD D++LFT+SK TGH+G+R GWAL+KD V + Y+ NT G
Sbjct: 227 VYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTP 286
Query: 322 KDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381
+++QLR+ KVLK V K F ++ RW + + +S FS ELP
Sbjct: 287 RETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQ 346
Query: 382 -QFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439
++C + R P P++AW+KCE E +DC + +I T++G F S +YVR+S++
Sbjct: 347 SEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK 406
Query: 440 RDENYNLFVQRLSKIL 455
++++ + L ++
Sbjct: 407 TQDDFDQLMYYLKDMV 422
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 83.3 bits (205), Expect = 5e-18
Identities = 54/348 (15%), Positives = 106/348 (30%), Gaps = 68/348 (19%)
Query: 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYS 202
P + + + + +I+V G Q + A+ V+ AP++
Sbjct: 70 PRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDE----VIIPAPFWV 125
Query: 203 SYPSITDCVKSRLYKWAGDAKRFNKDGPYIE-------------LVTSPNNPDGSVR--- 246
SYP + + + + E + +P+NP G V
Sbjct: 126 SYPEMVKLAEGTPVILPTTVE--TQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPD 183
Query: 247 -----QSVVNRSGGILVHDLAY-----YWPQYTSIT----YPADHDLMLFTVSKSTGHAG 292
V +G ++ D Y Q+ SI + ++ +K+ G
Sbjct: 184 EVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG 243
Query: 293 TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352
R+G+ L + + K TK +T V +Q + + +
Sbjct: 244 WRVGF-LAGPVPLVKAATKIQGHSTSNVCTFAQY-----------GAIAAYENSQDCVQE 291
Query: 353 TNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKCEQEIED--- 408
+ R + + A+ P +P AF + +
Sbjct: 292 MLAAFAERRRYMLDALNAMPGLECP--------------KPDGAFYMFPSIAKTGRSSLD 337
Query: 409 -CESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455
C L +++ T G FG + +R+S + ++RL K L
Sbjct: 338 FCSELLDQHQVATVPGAAFG-ADDCIRLSYATDLDTIKRGMERLEKFL 384
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 81.3 bits (200), Expect = 2e-17
Identities = 54/341 (15%), Positives = 104/341 (30%), Gaps = 57/341 (16%)
Query: 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYS 202
PE + + + +V G +Q A+ V+ +PY+
Sbjct: 71 PELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDE----VIVLSPYWV 126
Query: 203 SYPSITDCVKSRLYKW-----------AGDAKRFNKDGPYIELVTSPNNPDGSVRQ---- 247
SYP + + + +R +V SPNNP G+V
Sbjct: 127 SYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVL 186
Query: 248 ----SVVNRSGGILVHD-----LAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWA 298
+ LV D L Y ++ +H L + +K+ G RIG+A
Sbjct: 187 EALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYA 246
Query: 299 LVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358
++A + S + + ++ TN + S
Sbjct: 247 ---------------------CGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS 285
Query: 359 TRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA-FAWLKCEQEIEDCESF---LK 414
+ ++ + + E + +A P A + + D L
Sbjct: 286 RAFVEMAREAYRRRRDLLLEGLTALGL---KAVRPSGAFYVLMDTSPIAPDEVRAAERLL 342
Query: 415 GNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455
+ G F + +VR+S +EN ++R +++L
Sbjct: 343 EAGVAVVPGTDFA-AFGHVRLSYATSEENLRKALERFARVL 382
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 66.4 bits (161), Expect = 1e-12
Identities = 53/347 (15%), Positives = 100/347 (28%), Gaps = 63/347 (18%)
Query: 143 PEFAKEVVR-LHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYY 201
E + + L K G I+V G+ Q F L A V+ P +
Sbjct: 65 LELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEE----VLIPTPAF 120
Query: 202 SSYPSITDCVKSRLYKWAGDA-----------KRFNKDGPYIELVTSPNNPDGSVRQ--- 247
SY + + K++ D ++ SP NP G+V
Sbjct: 121 VSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKD 180
Query: 248 -----SVVNRSGGILVHDLAYYWPQYTSITYPA--------DHDLMLFTVSKSTGHAGTR 294
V I++ D Y Y + + + + + SK+ G R
Sbjct: 181 LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR 240
Query: 295 IGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354
+G+ + + + + T C + + +
Sbjct: 241 LGFVAAPSWIIERMVKFQMYNAT---------------------CPVTFIQYAAAKALKD 279
Query: 355 HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA-FAWLKCEQEIED----C 409
+ +++R + L +P+ A + + +
Sbjct: 280 ERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPT----VKPKGAFYIFPRIRDTGLTSKKFS 335
Query: 410 ESFLKGNKILTRSGKHFGFS-PKYVRISMLDRDENYNLFVQRLSKIL 455
E LK ++ G FG + YVRIS E + R+ ++L
Sbjct: 336 ELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 49.9 bits (118), Expect = 3e-07
Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 36/221 (16%)
Query: 246 RQSVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKD--- 302
+ S I +++ +SK G R+G+ D
Sbjct: 197 EYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPEN 256
Query: 303 -MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361
+ ++ + + + +Q A L + + ++ R
Sbjct: 257 KLSEVREAIDRLARIRLCPNTPAQFAAIAGLT-----------GPMDYLKEYMKKLKERR 305
Query: 362 KQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKCEQ-----EIEDCESFLKG 415
+ + + S + PQ AF + K E + E L
Sbjct: 306 DYIYKRLNEIPGISTTK--------------PQGAFYIFPKIEVGPWKNDKEFVLDVLHN 351
Query: 416 NKILTRSGKHFGFS-PKYVRISMLDRDENYNLFVQRLSKIL 455
+L G FG + R L E + R K +
Sbjct: 352 AHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFM 392
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 36/293 (12%), Positives = 76/293 (25%), Gaps = 27/293 (9%)
Query: 162 ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKW--A 219
EN V ++ A + AL + I + P + S V ++ ++
Sbjct: 67 ENDKCVGFNRTSSAILATILALKPKKV---IHYLPELPGHPSIERSCKIVNAKYFESDKV 123
Query: 220 GDAKRFNKDGPYIELVTSPNNPDGSVRQSV------VNRSGGILVHDLAYYWPQYTSITY 273
G+ + + S + ++ I+ D A
Sbjct: 124 GEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ 183
Query: 274 PADHDLMLFTVSKSTGHAGTRIGWALV-KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVL 332
P L V ST L+ E+ K+ +
Sbjct: 184 PPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLL------- 236
Query: 333 KVVSDSCKPSGSEDECFFEFTNHQMSTRW-KQLRMAVQKSGLFSVPELPSQFCTFLGRAF 391
+ ++ + ++ L ++ + + F
Sbjct: 237 -----AGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGF 291
Query: 392 EPQPAFAWLKCEQE--IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDE 442
+ + + IE + LK I+T + + K +RI + RD
Sbjct: 292 VIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDA 344
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 49/342 (14%), Positives = 93/342 (27%), Gaps = 63/342 (18%)
Query: 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYS 202
E + + + +VV G+ Q A AL V+ +P +
Sbjct: 68 YELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDE----VIVFSPVWV 123
Query: 203 SYPSITDCVKSRLYKWAGDAKRFNKDGPYIE-----------LVTSPNNP-----DGSVR 246
SY + + + L+ SPNNP
Sbjct: 124 SYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFL 183
Query: 247 QSVVN--RSGGILVHDLAYYWPQYTSITYP--------ADHDLMLFTVSKSTGHAGTRIG 296
+ +V + + Y + + D + + SKS G R+G
Sbjct: 184 EGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG 243
Query: 297 WALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356
+ + + + + E +
Sbjct: 244 YLISSEKVATAVSKIQSHTTSCINTVAQYAALKA---------------LEVDNSYMVQT 288
Query: 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAF-AWLKCEQ-EIEDCESFLK 414
R + ++K G+ + EP+ AF + K +++ CE L+
Sbjct: 289 FKERKNFVVERLKKMGV---------------KFVEPEGAFYLFFKVRGDDVKFCERLLE 333
Query: 415 GNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456
K+ G F P +VR+S E + R+ L+
Sbjct: 334 EKKVALVPGSAFL-KPGFVRLSFATSIERLTEALDRIEDFLN 374
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 3/119 (2%)
Query: 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA-F 397
+ +++ + + A C P A +
Sbjct: 238 RRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANY 297
Query: 398 AWLKCEQEIEDCESFLKGNKILTRSGKHF-GFSPKYVRISMLDRDENYNLFVQRLSKIL 455
L+CE+E D + L +IL RS ++ G +Y R+++ +N + L +L
Sbjct: 298 LLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIRSAAQN-ERLLAALRNVL 355
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 58/371 (15%), Positives = 116/371 (31%), Gaps = 86/371 (23%)
Query: 143 PEFAKEVVR-LHKVVGNAIT-ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPY 200
P F K +V + ++ GN +T + +H+V+ G+T + ++ L+ +V+ PY
Sbjct: 87 PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGE----AVLIPTPY 142
Query: 201 YSSYPSITDCVKSR------------------LYKWAGDAKRFNKDGPYIELVTSPNNPD 242
Y + + A LVT+P+NP
Sbjct: 143 YPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPL 202
Query: 243 GSVRQSV-------------VNRSGGILVHDLAYYWPQYTSI------------TYPADH 277
G+ ++ + A+ P + S+ +
Sbjct: 203 GTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQR 262
Query: 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSD 337
+++++SK G G R+G D V TK S + + +
Sbjct: 263 VHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK----------MSSFGLVSSQTQHLLS 312
Query: 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA- 396
+ + + + ++ R K+L +QKSG+
Sbjct: 313 AMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGI---------------SCLNGNAGL 357
Query: 397 FAWLKC---------EQEIEDCESFLKGNKILTRSGKHFGFS-PKYVRISMLDRDENY-N 445
F W+ E E+E + + + G + P + R+ + E +
Sbjct: 358 FCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLD 417
Query: 446 LFVQRLSKILS 456
L +QRL +
Sbjct: 418 LAMQRLKAFVG 428
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 38/344 (11%), Positives = 99/344 (28%), Gaps = 36/344 (10%)
Query: 143 PEFAKEVVR-LHKVVGNAIT-ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPY 200
PEF K + + + K G + + +V+ G+T + ++ L+ + + +PY
Sbjct: 86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGD----AFLVPSPY 141
Query: 201 YSSYPSIT---DCVKSRLYKWAGDAKRFNKDGPYIELVTSPNNPDGSVRQSVVNRSGGIL 257
Y ++ V+ E + + V+ ++ L
Sbjct: 142 YPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPL 201
Query: 258 VHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT 317
+ +++ H++ L + + ++ ++MT +
Sbjct: 202 GTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLV 260
Query: 318 IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVP 377
V S+ +V + + +ST+ + A+ F
Sbjct: 261 HIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDN 320
Query: 378 ELPSQFCTFLG--------------RAFEPQPAF-AWLKC---------EQEIEDCESFL 413
L + + W+ + E+ +
Sbjct: 321 FLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVII 380
Query: 414 KGNKILTRSGKHFGFS-PKYVRISMLDRDENY-NLFVQRLSKIL 455
K+ G F P + R+ + D+ ++ + R+ + +
Sbjct: 381 NDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFV 424
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 44/239 (18%)
Query: 234 LVTSPNNP-----DGSVRQSVVN--RSGGILVHDLAYY------WPQYTSITYPADHDLM 280
L+ +P NP +++ R+ + + Y + +
Sbjct: 157 LLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFT 216
Query: 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCK 340
+ + K G R+GW + + + +
Sbjct: 217 VGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSF---------------------SA 255
Query: 341 PSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPA-FAW 399
P+ + + ++ LR ++ L + + P+ F
Sbjct: 256 PTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRV----YVPEGTYFLM 311
Query: 400 LKCEQEIEDCESFLKGNKILTRSGKHFGFSPK---YVRISMLDRDENYNLFVQRLSKIL 455
+ D ++ ++ F R + +E +L ++RL +++
Sbjct: 312 AELPGW--DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 7e-04
Identities = 43/359 (11%), Positives = 98/359 (27%), Gaps = 59/359 (16%)
Query: 143 PEFAKEVVR-LHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYY 201
P K + +++G I +++V G A A E V+ P++
Sbjct: 67 PPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQA----LVDEGDEVIIIEPFF 122
Query: 202 SSYPSITDCVKSRLYKWAGDAKRFNKDGPYIE---------------------LVTSPNN 240
Y +T R + ++ +PNN
Sbjct: 123 DCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNN 182
Query: 241 PDGSV-------RQSVVNRSGGILVHDLAYYW------PQYTSITY---PADHDLMLFTV 284
P G V + + + ++ Y Q+ SI + L + +
Sbjct: 183 PLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSA 242
Query: 285 SKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQL--RAAKVLKVVSDSCKPS 342
K+ G ++GW L D + T + ++ + + +++
Sbjct: 243 GKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSY 302
Query: 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKS--GLFSVPELPSQFCTFLGRAFEPQPAFAWL 400
+ + M + + + F + ++ R P
Sbjct: 303 FVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISD-----FKRKMPDLPGAVDE 357
Query: 401 KCEQEIEDCESFLKGNKILTRSGKHFGFSPK------YVRISMLDRDENYNLFVQRLSK 453
++ + +K ++ F P Y+R + + ++L K
Sbjct: 358 PYDRRF--VKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRK 414
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 0.002
Identities = 23/181 (12%), Positives = 46/181 (25%), Gaps = 27/181 (14%)
Query: 263 YYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSK 322
H +L T+SK+ AG R G+ L + + M
Sbjct: 189 CPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIA--------- 239
Query: 323 DSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382
P +A ++ + ++ E+P
Sbjct: 240 ------------PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCV 287
Query: 383 FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDE 442
F + + + +S I+ R +RI++ R+E
Sbjct: 288 EQVFDSETN-----YILARFKASSAVFKSLWD-QGIILRDQNKQPSLSGCLRITVGTREE 341
Query: 443 N 443
+
Sbjct: 342 S 342
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 37.7 bits (86), Expect = 0.003
Identities = 34/298 (11%), Positives = 69/298 (23%), Gaps = 53/298 (17%)
Query: 143 PEFAKEVVRL-HKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYY 201
P ++ +A+ E+ I V + S S+ + + +S +
Sbjct: 76 PSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWA 135
Query: 202 SSYPSITDCVKSRLYKWAGDAKRFNKDGPYIE-------------LVTSPNNPDGSV--- 245
+ + + + D L + +NP G
Sbjct: 136 NHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTS 195
Query: 246 ----RQSVVNRSGGILVH-DLAYYWPQYTSITYPA-------------DHDLMLFTVSKS 287
+ S + D AY + A + + +K+
Sbjct: 196 EQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKN 255
Query: 288 TGHAGTRIGW-----ALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342
G G R+G + K I + +
Sbjct: 256 AGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPEL 315
Query: 343 GSEDECFFEFTNHQMSTRWKQLRMAVQK-------------SGLFSVPELPSQFCTFL 387
+ + +++ LR + K G+FS L Q L
Sbjct: 316 TEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRL 373
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 456 | |||
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.94 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.87 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.84 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.82 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.8 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.78 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.77 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.77 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.73 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.73 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.73 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.72 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.72 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.72 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.72 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.71 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.68 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.67 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.66 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.64 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.64 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.64 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.64 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.63 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.63 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.62 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.61 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.6 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.6 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.6 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.6 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.58 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.56 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.55 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.54 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.53 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.51 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.5 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.48 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.48 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.46 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.45 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.43 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.42 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.42 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.41 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.4 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.21 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.18 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.17 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.08 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.05 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.04 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.02 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.93 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.85 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.81 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.58 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.6 |
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=4.8e-68 Score=531.69 Aligned_cols=405 Identities=32% Similarity=0.593 Sum_probs=356.2
Q ss_pred CCCCchhhHHHHhhhhhccccCCCceeecccccccccCCCCCCccccccccc-----hhhhcCCCCeEEecCCCCCCCch
Q 012785 35 CNFDSSFSLQQQRRSVMAGCVLKEKEHVSERTHLSLSSSPSPSPSSSLTSTD-----IQSQDGGERIINVDHGDPTMYEK 109 (456)
Q Consensus 35 ~~~w~~~~~~~~~~~~~~~c~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~l~~g~p~~~~~ 109 (456)
+.+|+.+|++|||++|+++||+|||+|+| |+..++ .+.|+|++ +|+...+++++|+++|||++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdp~~~~~ 71 (425)
T d2hoxa1 1 KMTWTMKAAEEAEAVANINCSEHGRAFLD-----GIISEG----SPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEE 71 (425)
T ss_dssp CCSTTHHHHHHHHHHHTSCCGGGEECCTT-----SCEETT----EECCEECTTEESTTSCEECTTCCEECCSCCCGGGHH
T ss_pred CcchHHHHHhhhhhhheeeecCCcceeec-----ccccCC----CcccccccCCCCCcccccCCCceeeCCCCCCCCCCH
Confidence 36899999999999999999999999999 555555 58999988 68888999999999999999999
Q ss_pred hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc-----
Q 012785 110 YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS----- 184 (456)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~----- 184 (456)
.|.++.+....++++|++++|+.+.. ||+++++|+++|++++...|+..+++++|++|+|++|+|++++++|.
T Consensus 72 ~w~~~~~~~~~~~~~~~~~sy~~~~~--~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~ 149 (425)
T d2hoxa1 72 YWKQHKEASAVLVSPWHRMSYFFNPV--SNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTA 149 (425)
T ss_dssp HHTTSHHHHCEEECTTTTCSSSCSSC--CTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTT
T ss_pred HHHhCcccceEEeecccccceecCCc--cccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhcccccc
Confidence 99999888888889999988766643 57889999999999999999998888899999999999999999995
Q ss_pred ---CCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcccccc---CCCeEEEEcCCCCCCcccchHHhhhcCcEEE
Q 012785 185 ---SQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQSVVNRSGGILV 258 (456)
Q Consensus 185 ---~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~~l~~~~~~~iI 258 (456)
.||| +|+++.|+|+.|...++.++.+.+.|++|.+.++. .++++++++|||||||.+... ..+++.+|
T Consensus 150 ~~~~pg~----~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~~--v~~~~~~I 223 (425)
T d2hoxa1 150 TPDAPES----KVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHA--VIKGCKSI 223 (425)
T ss_dssp CTTSCCE----EEEECSSCCHHHHHHHHHSCBTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCCC--SSTTCEEE
T ss_pred ccCCCCC----EEEEecCccccHHHHHHHcCCCCCccCCCHHHHHhhCCCCceEEEEECCCCCCcchhhh--hhhCCEEE
Confidence 4666 99999999999999999999999999999988864 367999999999999998543 33689999
Q ss_pred eeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 259 HDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 259 ~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
+||+|+++++.+++...+++|+++||||+||++|+|+||++++++.+++++.+....++.++|.++|.++.++|+.....
T Consensus 224 ~DEaY~~~~f~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~ 303 (425)
T d2hoxa1 224 YDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAM 303 (425)
T ss_dssp EECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCccccchhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHH
Confidence 99999999999998889999999999999999999999999988999999999998899999999999999988743210
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccC-CCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhC
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPE-LPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGN 416 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~ 416 (456)
.........++++..++.+++||+.+.+.|++.+.+.+.. |.+++|+|+....++.++|+|+++.. +.+++.++|+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~ 383 (425)
T d2hoxa1 304 VKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNG 383 (425)
T ss_dssp HHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhC
Confidence 0000001256888999999999999999999988776654 57899999999999999999999854 456788999999
Q ss_pred CEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 417 KILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 417 gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
||.++||+.||.+++|+|||+..++|++++++++|+++++
T Consensus 384 gI~v~pGs~FG~~~~yvRisl~~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 384 RINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp TEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred CEEEEechhcCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 9999999999987899999998899999999999999875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=5.2e-51 Score=406.63 Aligned_cols=327 Identities=18% Similarity=0.253 Sum_probs=274.9
Q ss_pred hcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEE
Q 012785 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVV 168 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~ 168 (456)
+..|.++|||+.|+|++++|+.+.++.. .++..+ .+.|+++.| .++||++|++|+. .+|..+. +++|++
T Consensus 26 ~~~g~~vi~l~~G~p~~~~p~~v~~a~~-~~~~~~---~~~Y~~~~G-----~~~lR~aia~~~~~~~g~~~~-~~~i~i 95 (388)
T d1j32a_ 26 KAEGIDVCSFSAGEPDFNTPKHIVEAAK-AALEQG---KTRYGPAAG-----EPRLREAIAQKLQRDNGLCYG-ADNILV 95 (388)
T ss_dssp HTTTCCCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGGEEE
T ss_pred HHCCCCeEECCCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHHHHHhcccCCC-CceEEE
Confidence 4567899999999999998887776432 223333 346999999 5999999999995 4566665 579999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------cccccc---CCCeEEEEcC
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFNK---DGPYIELVTS 237 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~~---~~~~~i~v~~ 237 (456)
|+|+++++.+++++++++|| +|++++|+|+.|...++..|.+.+.++.+ .+.++. .++++++++|
T Consensus 96 t~G~~~al~~~~~~~~~~gd----~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~ 171 (388)
T d1j32a_ 96 TNGGKQSIFNLMLAMIEPGD----EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT 171 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTC----EEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred cCCHHHHHHHHHHHHhCCCC----EEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECC
Confidence 99999999999999999999 99999999999999999999998876654 333332 3568999999
Q ss_pred CCCCCcccchH--------HhhhcCcEEEeeecCCCCC-----CCCCCC----CCCCcEEEecCccccCCCCceEEEEEE
Q 012785 238 PNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQ-----YTSITY----PADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 238 P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~-----~~~~~~----~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
||||||.+++. +|++++++||+||+|.+.. +.++.. ..+++|+++||||.|++||+|+||+++
T Consensus 172 P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~ 251 (388)
T d1j32a_ 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEE
Confidence 99999999993 7899999999999997522 222221 125899999999999999999999999
Q ss_pred eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Q 012785 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP 380 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 380 (456)
+ +++++.+.+.......+++...|.++...+. .. ++++++.++.++++++.+.+.|++.+++.+..|+
T Consensus 252 ~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~ 319 (388)
T d1j32a_ 252 P-VPLVKAATKIQGHSTSNVCTFAQYGAIAAYE---NS--------QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD 319 (388)
T ss_dssp C-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHH---SC--------SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC
T ss_pred C-HHHHHHHHHhhhhccccccHHHHHHHhhccc---ch--------HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCC
Confidence 7 9999999888877788999999999988887 33 6799999999999999999999998788899999
Q ss_pred CcccccccccCCCCCceEEeecCc---c-HHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 381 SQFCTFLGRAFEPQPAFAWLKCEQ---E-IEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 381 g~~~~~~~~~~~~~~~f~~~~~~~---~-~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|++ |+|++++. + .+.+.++++++||.++||+.|+. ++++||+|+.++|++++++++|+++++
T Consensus 320 gg~-------------~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~-~~~~Rls~~~~~e~l~~al~rl~~~l~ 385 (388)
T d1j32a_ 320 GAF-------------YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA-DDCIRLSYATDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp BTT-------------EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC-TTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ceE-------------EEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCC-CCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 998 99999853 2 34556777889999999999985 789999998889999999999999873
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8e-51 Score=404.57 Aligned_cols=328 Identities=20% Similarity=0.277 Sum_probs=275.4
Q ss_pred hcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEE
Q 012785 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVV 168 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~ 168 (456)
+..|+++|+|+.|+|++++|+.+.++.. .++..+ ...|+++.| .++||++|++|+.. ++..+. +++|++
T Consensus 27 ~~~G~~vi~l~~g~p~~~~p~~i~~a~~-~~~~~~---~~~Y~~~~G-----~~~lR~~ia~~~~~~~~~~~~-~~~i~i 96 (382)
T d1b5pa_ 27 RRQGVDLVALTAGEPDFDTPEHVKEAAR-RALAQG---KTKYAPPAG-----IPELREALAEKFRRENGLSVT-PEETIV 96 (382)
T ss_dssp HHTTCCCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHTTCCCCC-GGGEEE
T ss_pred HhCCCCeEECCCCCCCCCCCHHHHHHHH-HHHhcC---CcCCCCCCC-----CHHHHHHHHhhhhhhcccccc-ccccee
Confidence 5568899999999999999888776432 223333 246999999 59999999999954 455554 689999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc---CCCeEEEEcC
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK---DGPYIELVTS 237 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~---~~~~~i~v~~ 237 (456)
|+|+++++..++++++++|| +|++++|+|+.|...++..|.+++.++.+. +.++. .++++++++|
T Consensus 97 t~G~~~al~~~~~~l~~~gd----~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 172 (382)
T d1b5pa_ 97 TVGGSQALFNLFQAILDPGD----EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNS 172 (382)
T ss_dssp ESHHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEES
T ss_pred cCCHHHHHHHHHHHhCCCCC----EEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECC
Confidence 99999999999999999999 999999999999999999999998876543 22222 2568999999
Q ss_pred CCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHH
Q 012785 238 PNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDME 304 (456)
Q Consensus 238 P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~ 304 (456)
||||||.++++ +|++++++||+||+|.+..+ .+.....+++|+++||||.|++||+|+||++++ ++
T Consensus 173 P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~-~~ 251 (382)
T d1b5pa_ 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGP-KE 251 (382)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECC-HH
T ss_pred CCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEEC-HH
Confidence 99999999993 78999999999999986322 333355689999999999999999999999997 99
Q ss_pred HHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccc
Q 012785 305 VAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFC 384 (456)
Q Consensus 305 ~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~ 384 (456)
+++.+.+.......+++.+.|.++...+.... ..+.+++..++.++++++.+.+.+...+ +++..|+|++
T Consensus 252 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~p~gg~- 321 (382)
T d1b5pa_ 252 VIKAMASVSRQSTTSPDTIAQWATLEALTNQE--------ASRAFVEMAREAYRRRRDLLLEGLTALG-LKAVRPSGAF- 321 (382)
T ss_dssp HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTT-
T ss_pred HHHHHHHHHHhcccCccccccccccccccccc--------chhHHHHHHHHHHHhhhhHHHHHHhhcC-CeEecCCceE-
Confidence 99999988888888999999988888776211 1367788889999999999999998876 6778889998
Q ss_pred ccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 385 TFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. +...+.+.|.++||.++||+.|+. ++++||+|+.++|+++++++||+++|
T Consensus 322 ------------~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~-~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 322 ------------YVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-FGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp ------------EEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-TTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred ------------EEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCC-CCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 99999853 567788889999999999999985 78999999889999999999999875
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.1e-50 Score=400.13 Aligned_cols=339 Identities=22% Similarity=0.240 Sum_probs=278.8
Q ss_pred cccccccchhhhcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hc
Q 012785 79 SSSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VG 157 (456)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g 157 (456)
+.++++.+. ....+++|+|+.|+|++++|+.+.+... .++.++ .+.|++..| .++||++||+|+.. .+
T Consensus 12 s~ir~~~~~--~~~~~dvi~l~~g~p~~~~p~~v~~~~~-~a~~~~---~~~Y~~~~G-----~~~lr~aia~~~~~~~~ 80 (388)
T d1gdea_ 12 SEIRKLFDI--AAGMKDVISLGIGEPDFDTPQHIKEYAK-EALDKG---LTHYGPNIG-----LLELREAIAEKLKKQNG 80 (388)
T ss_dssp CHHHHHHHH--HHHCTTCEECCCCSCCSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHH--HhCCCCeEECCCCCCCCCCCHHHHHHHH-HHHhcC---ccCCCCCcC-----CHHHHHHHHHHHHhhcc
Confidence 456666665 3445689999999999998887765432 233333 346999999 59999999999854 56
Q ss_pred CccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc--------ccccc--
Q 012785 158 NAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA--------KRFNK-- 227 (456)
Q Consensus 158 ~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~--------~~l~~-- 227 (456)
....++++|++|+|+++++.+++.+++.+|| +|++++|+|+.|...++..|++++.++.+. +.++.
T Consensus 81 ~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~ 156 (388)
T d1gdea_ 81 IEADPKTEIMVLLGANQAFLMGLSAFLKDGE----EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV 156 (388)
T ss_dssp CCCCTTTSEEEESSTTHHHHHHHTTTCCTTC----EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC
T ss_pred ccCCChheeeeccCcchHHHHHHHHhcCCCC----EEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhC
Confidence 5555677899999999999999999999999 999999999999999999999999877643 33322
Q ss_pred -CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCC-----CCCC---CCCCCCcEEEecCccccCC
Q 012785 228 -DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQ-----YTSI---TYPADHDLMLFTVSKSTGH 290 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~-----~~~~---~~~~~~~i~i~S~SK~~g~ 290 (456)
.++++++++|||||||.++++ +|++++++||+||+|.+.. ..++ ....+++|+++||||.||+
T Consensus 157 ~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 236 (388)
T d1gdea_ 157 TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 236 (388)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred ccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccC
Confidence 367899999999999999983 7889999999999998531 2222 2345789999999999999
Q ss_pred CCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 012785 291 AGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK 370 (456)
Q Consensus 291 ~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 370 (456)
||+|+||++++ +++++.+.........+.+.+.|.++..+++ ++ +..++++..++.++++++.+.+.|..
T Consensus 237 ~GlR~G~ii~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~------~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (388)
T d1gdea_ 237 TGWRLGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAKALK---DE------RSWKAVEEMRKEYDRRRKLVWKRLNE 306 (388)
T ss_dssp GGGCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHT---CH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccEEEEEee-ccchhhhhhccccccccccccchhhHHHHHh---hc------cchhHHHHHHHHHHHhhhhhhhhhhh
Confidence 99999999997 9999999999888899999999999999887 32 23567888899999999999999988
Q ss_pred cCCccccCCCCcccccccccCCCCCceEEeecCc---cH-HHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHH
Q 012785 371 SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EI-EDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYN 445 (456)
Q Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~-~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~ 445 (456)
.+ +.+..|+|++ |+|+++++ +. +.+..+++++||.++||+.|+. +++++||+++.++|+++
T Consensus 307 ~~-~~~~~p~gg~-------------fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~ 372 (388)
T d1gdea_ 307 MG-LPTVKPKGAF-------------YIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLE 372 (388)
T ss_dssp TT-CCCCCCCBTT-------------EECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHH
T ss_pred cc-ccccCCCceE-------------EEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHH
Confidence 75 5667788887 99999863 33 4455667889999999999985 57899999988899999
Q ss_pred HHHHHHHhhhC
Q 012785 446 LFVQRLSKILS 456 (456)
Q Consensus 446 ~~l~~L~~~l~ 456 (456)
+++++|+++++
T Consensus 373 ~al~rL~~~l~ 383 (388)
T d1gdea_ 373 EAMDRMERVLK 383 (388)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999873
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=3.6e-49 Score=397.18 Aligned_cols=344 Identities=13% Similarity=0.173 Sum_probs=277.8
Q ss_pred ccccccchhhhcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcC
Q 012785 80 SSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGN 158 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~ 158 (456)
...++... ....++|||+.|+|++++|+++.++.. .++.......+.|++..| .++||++||+|+. .+|.
T Consensus 15 ~~~~~~~~---~~~~~~I~L~~G~Pd~~~p~~i~eal~-~a~~~~~~~~~~Y~~~~G-----~~~lReaiA~~~~~~~g~ 85 (418)
T d2r5ea1 15 VWVEYIQL---AAQYKPLNLGQGFPDYHAPKYALNALA-AAANSPDPLANQYTRGFG-----HPRLVQALSKLYSQLVDR 85 (418)
T ss_dssp HHHHHHHH---HHHHCCEECSSSCCSSCCCHHHHHHHH-HHHTCSCGGGGSCCCTTC-----CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH---hcCCCCEEccCCCCCCCCCHHHHHHHH-HHHhCCCccCcCCCCCCC-----CHHHHHHHHHHHHHHhCC
Confidence 44455444 222467999999999998887776433 223332223457999999 5999999999995 4677
Q ss_pred ccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc--------------
Q 012785 159 AITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR-------------- 224 (456)
Q Consensus 159 ~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~-------------- 224 (456)
...+.++|++|+|+++++.+++++++++|| .|++++|+|+.|...+...|.+++.++.+.+.
T Consensus 86 ~~~p~~~I~it~G~~~al~~~~~~l~~~gd----~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 161 (418)
T d2r5ea1 86 TINPMTEVLVTVGAYEALYATIQGHVDEGD----EVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDN 161 (418)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCH
T ss_pred CCCccceEEEcCCCchhhhhhhhhcccccc----ceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhH
Confidence 776567999999999999999999999999 99999999999999999999998877654321
Q ss_pred --c---ccCCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CC---CCCCCCCcEEEec
Q 012785 225 --F---NKDGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TS---ITYPADHDLMLFT 283 (456)
Q Consensus 225 --l---~~~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~---~~~~~~~~i~i~S 283 (456)
+ ...++++++++|||||||.+++. +|++++++||+||+|.+..+ .+ +....+++++++|
T Consensus 162 ~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S 241 (418)
T d2r5ea1 162 NELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGS 241 (418)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEE
T ss_pred HHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeec
Confidence 1 11256899999999999999993 78999999999999985322 12 2244578999999
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
|||.+++||+|+||++++ +++++.+.+.......+.+.+.|.+++..+....... ...+++++++++.++++|+.
T Consensus 242 ~SK~~~~pGlRiG~~~~~-~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~r~~ 316 (418)
T d2r5ea1 242 AGKTFSLTGWKIGWAYGP-EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRL----KSPECYFNSISGELMAKRDY 316 (418)
T ss_dssp HHHHTTCGGGCCEEEESC-HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTT----TSTTSHHHHHHHHHHHHHHH
T ss_pred CCccccCCCccccccccc-chhhhhhhhcccccccccccchhhhcccccccccccc----ccchhhHHHHHHHHHHhhhh
Confidence 999999999999999997 9999999998887889999999998887776422111 12367899999999999999
Q ss_pred HHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------------cHHHHHHHHHhCCEEeecCCCCCC
Q 012785 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------------EIEDCESFLKGNKILTRSGKHFGF 428 (456)
Q Consensus 364 l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------------~~~~~~~~l~~~gI~v~pg~~fg~ 428 (456)
+.+.|++.+ +++..|+||| |+|++++. +.+.+..+++++||.+.||+.|+.
T Consensus 317 l~~~L~~~g-~~~~~P~gg~-------------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~ 382 (418)
T d2r5ea1 317 MASFLAEVG-MNPTVPQGGY-------------FMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYS 382 (418)
T ss_dssp HHHHHHHTT-CEEEECSBSS-------------EEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSC
T ss_pred HHhhHhhcC-CcccCCCcee-------------EEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCC
Confidence 999999985 7888899999 99998741 235566777889999999999974
Q ss_pred ------CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 429 ------SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 ------~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+++||||||+.++|++++++++|++++
T Consensus 383 ~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~l 415 (418)
T d2r5ea1 383 EPNKHLGEDFVRYCFFKKDENLQKAAEILRKWK 415 (418)
T ss_dssp GGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 257999999889999999999999986
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2e-48 Score=388.82 Aligned_cols=329 Identities=18% Similarity=0.223 Sum_probs=268.4
Q ss_pred hcCCCCeEEecCCCC---CCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCce
Q 012785 90 QDGGERIINVDHGDP---TMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHH 165 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~ 165 (456)
+..|.++|+|+.|+| ++++|+++.++.. .++..+ .++|++..| .++||++|++++.+ +|.... +++
T Consensus 26 ~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~-~a~~~~---~~~Y~~~~G-----~~~LR~aia~~~~~~~g~~~~-~~~ 95 (395)
T d1xi9a_ 26 EKKGIKVIRLNIGDPVKFDFQPPEHMKEAYC-KAIKEG---HNYYGDSEG-----LPELRKAIVEREKRKNGVDIT-PDD 95 (395)
T ss_dssp HHTTCCCEECCCCCGGGTTCCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHCCCCC-GGG
T ss_pred HHCCCCeEECCCCCCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCCC-----CHHHHHHHHHhhhhccccccc-ccc
Confidence 456888999999998 7888887776433 223333 346999999 59999999999964 566665 579
Q ss_pred EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC--------ccccc---cCCCeEEE
Q 012785 166 IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD--------AKRFN---KDGPYIEL 234 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d--------~~~l~---~~~~~~i~ 234 (456)
|++|+|+++++.+++.++..+|| +|++++|+|+.|...++..|.+++.++.+ .+.++ ..++++++
T Consensus 96 i~i~~G~~~~~~~~~~~~~~~Gd----~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~ 171 (395)
T d1xi9a_ 96 VRVTAAVTEALQLIFGALLDPGD----EILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 171 (395)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred cccccccchhhhhhhhhhcCCCC----EEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccccEEE
Confidence 99999999999999999999999 99999999999999999999998876643 23332 23678999
Q ss_pred EcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-----C-CCCCCCcEEEecCccccCCCCceEEEEEE
Q 012785 235 VTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-----I-TYPADHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 235 v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-----~-~~~~~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
++|||||||.++++ +|++++++||+||+|.+..+.. . ....+++|+++||||+|++||+|+||+++
T Consensus 172 l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~ 251 (395)
T d1xi9a_ 172 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYF 251 (395)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEE
T ss_pred ecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEe
Confidence 99999999999993 7899999999999998633221 1 13457899999999999999999999987
Q ss_pred eCH-HHHHH---HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 012785 301 KDM-EVAKK---MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSV 376 (456)
Q Consensus 301 ~~~-~~~~~---l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 376 (456)
+++ ..... ..........+++.++|.++...+. ++ ++++++.++.++++++.+.+.|++.+.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 320 (395)
T d1xi9a_ 252 VDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT---GP--------MDYLKEYMKKLKERRDYIYKRLNEIPGIST 320 (395)
T ss_dssp ECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHH---SC--------CHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred cCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhc---CC--------HHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 632 22222 2222334577889999999998887 33 679999999999999999999999887888
Q ss_pred cCCCCcccccccccCCCCCceEEeecCc-----cHHHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHH
Q 012785 377 PELPSQFCTFLGRAFEPQPAFAWLKCEQ-----EIEDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQR 450 (456)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~ 450 (456)
..|+|++ |+|++++. +.+.+.++++++||.+.||+.||. +++|+||+++.++|++++++++
T Consensus 321 ~~p~gg~-------------~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~r 387 (395)
T d1xi9a_ 321 TKPQGAF-------------YIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDR 387 (395)
T ss_dssp CCCCBSS-------------EECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHH
T ss_pred cCCCeeE-------------EEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 8899988 99998852 445677888899999999999985 5889999998899999999999
Q ss_pred HHhhhC
Q 012785 451 LSKILS 456 (456)
Q Consensus 451 L~~~l~ 456 (456)
|+++++
T Consensus 388 l~~~l~ 393 (395)
T d1xi9a_ 388 FEKFMK 393 (395)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-47 Score=379.38 Aligned_cols=323 Identities=21% Similarity=0.269 Sum_probs=268.6
Q ss_pred hcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEE
Q 012785 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVV 168 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~ 168 (456)
...|+++|||+.|+|++++|+++.+... ..+.++ ...|+++.| .++||+++++++.. ++...+ +++|++
T Consensus 24 ~~~G~~vI~l~~G~p~~~~p~~i~~~~~-~~~~~~---~~~Y~~~~G-----~~~lR~aia~~~~~~~~~~~~-~~~i~~ 93 (375)
T d1o4sa_ 24 IKKGEDVINLTAGEPDFPTPEPVVEEAV-RFLQKG---EVKYTDPRG-----IYELREGIAKRIGERYKKDIS-PDQVVV 93 (375)
T ss_dssp HHTTCCCEECCCSSCSSCCCHHHHHHHH-HHHTTC---CCCCCCTTC-----CHHHHHHHHHHHHHHHTCCCC-GGGEEE
T ss_pred HHCCCCeEECCCcCCCCCCCHHHHHHHH-HHHhcC---CcCCCCCcC-----CHHHHHHHHhhhhhccccccc-cccccc
Confidence 4568899999999999998887775432 223333 246999999 59999999999965 555554 689999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcccc--------c---cCCCeEEEEcC
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRF--------N---KDGPYIELVTS 237 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l--------~---~~~~~~i~v~~ 237 (456)
|+|+++++..++.+|+++|| +|++++|+|+.|...+...|.....++.+.+.- + ..++++++++|
T Consensus 94 t~G~~~al~~~~~~l~~~gd----~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 169 (375)
T d1o4sa_ 94 TNGAKQALFNAFMALLDPGD----EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 169 (375)
T ss_dssp ESHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred cCcHHHHHHHHHHHHhCCCC----EEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccCccEEEEeC
Confidence 99999999999999999999 999999999999999999999888766554321 1 13568999999
Q ss_pred CCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------CCCCCCCcEEEecCccccCCCCceEEEEEEeC
Q 012785 238 PNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------ITYPADHDLMLFTVSKSTGHAGTRIGWALVKD 302 (456)
Q Consensus 238 P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~ 302 (456)
||||||.+++. +|++++++||+||+|.+..+.. .....+++|+++||||.|++||+|+||++++
T Consensus 170 P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~- 248 (375)
T d1o4sa_ 170 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS- 248 (375)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC-
T ss_pred CCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccccccccc-
Confidence 99999999983 7899999999999998632211 2355789999999999999999999999997
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
+++++.+...+.......+...|..+...++ .+....++.++++++.+.+.|++.+ +++..|+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~r~~~~~~~l~~~g-~~~~~p~gg 313 (375)
T d1o4sa_ 249 EKVATAVSKIQSHTTSCINTVAQYAALKALE--------------VDNSYMVQTFKERKNFVVERLKKMG-VKFVEPEGA 313 (375)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTT--------------CCCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSBS
T ss_pred ccchhhhhhhhccccccccccchhhhhhhcc--------------cchhhhHHHHHHHHHHHHHHHHhcC-ceEecCCcc
Confidence 9999999888887888888888877776554 2345567889999999999999875 678888888
Q ss_pred ccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
+ |+|++++. +.+.+.++++++||.++||+.|+. ++||||+++.++|++++++++|+++|+
T Consensus 314 ~-------------f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~-~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 314 F-------------YLFFKVRGDDVKFCERLLEEKKVALVPGSAFLK-PGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp S-------------EEEEECSSCHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred E-------------EEEEECCCCHHHHHHHHHHhCCEEEEEccccCC-CCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 8 99999975 456677778889999999999985 789999998899999999999999985
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-48 Score=387.72 Aligned_cols=335 Identities=16% Similarity=0.225 Sum_probs=274.8
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCccCCCceEEEc
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAITENHHIVVG 169 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~~~~~~I~~t 169 (456)
..++++|||+.|+|++++|+.+.++.. .++..+ ...+.|++..| .++||++||+|++. +|....+.++|++|
T Consensus 22 ~~~~dvI~l~~G~p~~~~p~~v~~a~~-~al~~~-~~~~~Y~~~~G-----~~~LReaia~~~~~~~g~~~~~~~~I~it 94 (418)
T d1w7la_ 22 ASEHDVVNLGQGFPDFPPPDFAVEAFQ-HAVSGD-FMLNQYTKTFG-----YPPLTKILASFFGELLGQEIDPLRNVLVT 94 (418)
T ss_dssp HHTSCCEECCCCSCSSCCCHHHHHHHH-HHTSSC-GGGGSCCCTTC-----CHHHHHHHHHHHHHHHTCCCCHHHHEEEE
T ss_pred hCCCCCEECCCCCCCCCCCHHHHHHHH-HHHhCC-CcccCCCCCcC-----CHHHHHHHHHHHHHHhCCCCCcccceeec
Confidence 346689999999999998887765432 223222 22346999999 59999999999964 68877655789999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-----------cccc----------cC
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-----------KRFN----------KD 228 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-----------~~l~----------~~ 228 (456)
+|++++|.+++++++.+|| .|++++|+|+.|...+...|.+.+.++.+. ++++ ..
T Consensus 95 ~G~~~al~~~~~~l~~~g~----~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 170 (418)
T d1w7la_ 95 VGGYGALFTAFQALVDEGD----EVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS 170 (418)
T ss_dssp SHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCT
T ss_pred cCcHHHHHHHHHhhccCCc----eeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccc
Confidence 9999999999999999999 999999999999999999999987655432 1111 12
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCC---CCCCCCcEEEecCccccCCCC
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSI---TYPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~---~~~~~~~i~i~S~SK~~g~~G 292 (456)
++++++++|||||||.++++ +|+++++++|+||+|.+..+ .++ ....++++++.|+||.+++||
T Consensus 171 ~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG 250 (418)
T d1w7la_ 171 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG 250 (418)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG
T ss_pred cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCC
Confidence 56889999999999999983 78899999999999986322 222 234578999999999999999
Q ss_pred ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 293 TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 293 ~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
+|+||++++ +++++.+.+.+.....+++.+.|.++..+|....... .+..+++...++.++++++.+.+.|++.+
T Consensus 251 ~RvG~~v~~-~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~r~~l~~~L~~~g 325 (418)
T d1w7la_ 251 WKVGWVLGP-DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF----RQPSSYFVQFPQAMQRCRDHMIRSLQSVG 325 (418)
T ss_dssp GCCEEEECC-HHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTT----TSTTSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred Ccccccccc-hhhhhhhccccccccccccchhhHHHHHHhhhccccc----cccccccccchhhhhhhhhhhhhhhhhcC
Confidence 999999997 9999999999988899999999999998887422110 12357889999999999999999999875
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc----------------cHHHHHHHHHhCCEEeecCCCCCC------CC
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------------EIEDCESFLKGNKILTRSGKHFGF------SP 430 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------------~~~~~~~~l~~~gI~v~pg~~fg~------~~ 430 (456)
+++..|+||+ |+|+++++ +.+.+.++|+++||.+.||+.|+. .+
T Consensus 326 -~~~~~P~gg~-------------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~ 391 (418)
T d1w7la_ 326 -LKPLIPQGSY-------------FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFD 391 (418)
T ss_dssp -CEEEECSBSS-------------EEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSC
T ss_pred -CcccCCCcee-------------EEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCC
Confidence 7888899998 99998742 345577788999999999999963 36
Q ss_pred CeEEEEecCChhHHHHHHHHHHhhh
Q 012785 431 KYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 431 ~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
++|||||+.+++++++++++|+++.
T Consensus 392 ~~iRis~~~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 392 HYIRFCFVKDEATLQAMDEKLRKWK 416 (418)
T ss_dssp SEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHHh
Confidence 8999999889999999999999875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-47 Score=375.41 Aligned_cols=333 Identities=15% Similarity=0.241 Sum_probs=273.3
Q ss_pred ccccccchhhhcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcC
Q 012785 80 SSLTSTDIQSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGN 158 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~ 158 (456)
...++... ..++++|||+.|+|++++|+++.+... ..+.++ .+.|++..| .++||++||+|+++ +|.
T Consensus 15 ~~~~~~~~---a~~~~~i~l~~G~Pd~~~p~~i~~a~~-~~~~~~---~~~Y~~~~G-----~~~LReaia~~~~~~~g~ 82 (382)
T d1u08a_ 15 IFTQMSAL---AQQHQAINLSQGFPDFDGPRYLQERLA-HHVAQG---ANQYAPMTG-----VQALREAIAQKTERLYGY 82 (382)
T ss_dssp HHHHHHHH---HHHTTCEECCCSSCSSCCCHHHHHHHH-HHHHTT---CCSCCCTTC-----CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH---hccCCCEEccCCCCCCCCCHHHHHHHH-HHHhcC---CCCCCCCcC-----CHHHHHHHHHHHHHHhCC
Confidence 44444444 344588999999999998887765433 223333 347999999 59999999999964 687
Q ss_pred ccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCc-------cccc---cC
Q 012785 159 AITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDA-------KRFN---KD 228 (456)
Q Consensus 159 ~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-------~~l~---~~ 228 (456)
...++++|++|+|+++++.+++++++++|| .|++++|+|+.+...+...|........+. +.++ ..
T Consensus 83 ~~~~~~~I~vt~G~~~al~~~~~~l~~~gd----~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 158 (382)
T d1u08a_ 83 QPDADSDITVTAGATEALYAAITALVRNGD----EVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSE 158 (382)
T ss_dssp CCCTTTTEEEESSHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCT
T ss_pred CCCCCceEEeccchHHHHHHHHhhcccccc----eEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhcc
Confidence 776556799999999999999999999999 999999999999999999998877555433 3332 23
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC---C-----CCCCCCcEEEecCccccCCCC
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS---I-----TYPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~---~-----~~~~~~~i~i~S~SK~~g~~G 292 (456)
++++++++|||||||.+++. +|+++++++|.||+|....+.+ . ....+++|++.|+||.+++||
T Consensus 159 ~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG 238 (382)
T d1u08a_ 159 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG 238 (382)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCc
Confidence 67899999999999999983 6788999999999987522211 1 123578999999999999999
Q ss_pred ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 293 TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 293 ~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
+|+||++++ +++++.+.+.......+++.+.|.++..+++ ++ +++++.+++.++++++.+.+.+...+
T Consensus 239 ~RiG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~---~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (382)
T d1u08a_ 239 WKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLR---AE--------PEHYLALPDFYRQKRDILVNALNESR 306 (382)
T ss_dssp GCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH---HC--------THHHHTHHHHHHHHHHHHHHHTTSSS
T ss_pred ccchhhhcc-chhHHHHHhhhcccccccccccccccccccc---cc--------hHHHHHHHHHHHhhhhhhhhhhccCC
Confidence 999999997 9999999999888899999999999999998 33 67899999999999999999887654
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc----c-HHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecCChhHH
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----E-IEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLDRDENY 444 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~-~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i 444 (456)
+.+..|+||+ |+|++++. + .+.+.++++++||.+.||+.|+. +.++|||||+.++|++
T Consensus 307 -~~~~~p~gg~-------------~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l 372 (382)
T d1u08a_ 307 -LEILPCEGTY-------------FLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTL 372 (382)
T ss_dssp -CEECCCCBSS-------------EEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHH
T ss_pred -cEEecCCceE-------------EEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHH
Confidence 7888899998 99999863 3 45566677899999999999974 4579999998899999
Q ss_pred HHHHHHHHhh
Q 012785 445 NLFVQRLSKI 454 (456)
Q Consensus 445 ~~~l~~L~~~ 454 (456)
+++++||+++
T Consensus 373 ~~al~RL~~l 382 (382)
T d1u08a_ 373 LAAAERLRQL 382 (382)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 9999999874
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.1e-46 Score=371.28 Aligned_cols=338 Identities=16% Similarity=0.232 Sum_probs=271.0
Q ss_pred cccccccch--hhhcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHH-
Q 012785 79 SSSLTSTDI--QSQDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV- 155 (456)
Q Consensus 79 ~~~~~~~~~--~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~- 155 (456)
++++++... ..+..|.++|+|+.|+|++++|+++.++... ...+ .+.|++..| .++||++||+|+..
T Consensus 11 ~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~--~~~~---~~~Y~~~~G-----~~~LR~aia~~~~~~ 80 (389)
T d2gb3a1 11 SPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYE--NKPE---VVYYSHSAG-----IWELREAFASYYKRR 80 (389)
T ss_dssp CTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHH--TCCS---SCCCCCTTC-----CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCHHHHHHHHh--cCCC---CCCCCCCcC-----CHHHHHHHHHHHHHh
Confidence 356665442 1245778999999999999988877654321 1222 457999999 59999999999965
Q ss_pred hcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccc---------
Q 012785 156 VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFN--------- 226 (456)
Q Consensus 156 ~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~--------- 226 (456)
+|..+. +++|++|+|+++++..++.+++++|| .|++++|+|+.+...++..|.+.+.++.+.+...
T Consensus 81 ~g~~~~-~~~I~it~G~~~~l~~~~~~l~~~gd----~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
T d2gb3a1 81 QRVDVK-PENVLVTNGGSEAILFSFAVIANPGD----EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESF 155 (389)
T ss_dssp SCCCCC-GGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGG
T ss_pred cCCCcc-cceEEecccccccccccccccccCCC----eEEEeCCCCccccccccccCccccccccccccccchhhhhhhh
Confidence 466665 57999999999999999999999999 9999999999999999999999887776543321
Q ss_pred -cCCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCCCCCCCcEEEecCccccCCCC
Q 012785 227 -KDGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SITYPADHDLMLFTVSKSTGHAG 292 (456)
Q Consensus 227 -~~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~~~~~~~i~i~S~SK~~g~~G 292 (456)
..++++++++|||||||.+++. +|++++++||+||+|.+..+. ......++++++.|+||.+++||
T Consensus 156 ~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~G 235 (389)
T d2gb3a1 156 INERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACG 235 (389)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGG
T ss_pred cccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcc
Confidence 1356899999999999999993 789999999999999863222 22345688999999999999999
Q ss_pred ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 012785 293 TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG 372 (456)
Q Consensus 293 ~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 372 (456)
+|+||++++++.+.+.+... .....+.+.+.|.++..++. . .+++++.+++.++++++.+.+.|++++
T Consensus 236 lRiG~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~---~--------~~~~~~~~~~~~~~~~~~~~~~L~~~~ 303 (389)
T d2gb3a1 236 ARVGCLITRNEELISHAMKL-AQGRLAPPLLEQIGSVGLLN---L--------DDSFFDFVRETYRERVETVLKKLEEHG 303 (389)
T ss_dssp GCCEEEECSCHHHHHHHHHH-HHHSCCCCHHHHHHHHHHHT---C--------CHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeeeeccchhHHHHHhhh-hhcccccccccccccccccc---c--------cchhcccccccccccchhhhhhhhhhc
Confidence 99999999856665555444 34577778888888888775 2 378999999999999999999999998
Q ss_pred CccccCCCCcccccccccCCCCCceEEeecCc-cH-HHHHHHHHh-----CCEEeecCCCCCC----CCCeEEEEecCCh
Q 012785 373 LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EI-EDCESFLKG-----NKILTRSGKHFGF----SPKYVRISMLDRD 441 (456)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~-~~~~~~l~~-----~gI~v~pg~~fg~----~~~~iRis~~~~~ 441 (456)
...+..|.|++ |+|++++. +. +.+..++++ +||.+.||+.|+. +++++||+++.++
T Consensus 304 ~~~~~~p~~g~-------------~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~ 370 (389)
T d2gb3a1 304 LKRFTKPSGAF-------------YITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEK 370 (389)
T ss_dssp CCCBCCCSBSS-------------EEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCH
T ss_pred cccccCCCceE-------------EEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCH
Confidence 77788888888 99999864 33 444445544 5889999999864 3679999998899
Q ss_pred hHHHHHHHHHHhhhC
Q 012785 442 ENYNLFVQRLSKILS 456 (456)
Q Consensus 442 e~i~~~l~~L~~~l~ 456 (456)
|++++++++|++.|+
T Consensus 371 ~~l~~a~~~L~~~lk 385 (389)
T d2gb3a1 371 DLLSRAIDVLMEGLK 385 (389)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988763
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=7.4e-46 Score=370.06 Aligned_cols=328 Identities=15% Similarity=0.174 Sum_probs=259.9
Q ss_pred hcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEE
Q 012785 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVV 168 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~ 168 (456)
...++++|+|+.|+|+|++|+.+.++.. .++..+ ...|++ | .++||++||+|++ ++|..+. +++|++
T Consensus 27 ~~~g~~vi~l~~g~pdf~~p~~v~~al~-~~~~~~---~~~Y~~--g-----~~~Lr~aia~~~~~~~g~~~~-~~~I~v 94 (394)
T d1c7na_ 27 PEVGNEVVPLSVADMEFKNPPELIEGLK-KYLDET---VLGYTG--P-----TEEYKKTVKKWMKDRHQWDIQ-TDWIIN 94 (394)
T ss_dssp TTCCTTCCCCCSSSCSSCCCHHHHHHHH-HHHHHC---CCSSBC--C-----CHHHHHHHHHHHHHHHCCCCC-GGGEEE
T ss_pred HhcCCCeEEccCCCCCCCCCHHHHHHHH-HHHhCC---CcCCCC--C-----CHHHHHHHHHHHHHhcCCCCC-CcceEe
Confidence 3456789999999999999887776432 223333 234754 5 4899999999995 4677775 579999
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------ccccc----cCCCeEEEE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFN----KDGPYIELV 235 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~----~~~~~~i~v 235 (456)
|+|+++++.+++++++++|| +|++++|+|+++...+...|.+.+.++.+ .+.++ ..+++++++
T Consensus 95 t~G~~~al~~~~~~~~~pgd----~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l 170 (394)
T d1c7na_ 95 TAGVVPAVFNAVREFTKPGD----GVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (394)
T ss_dssp ESSHHHHHHHHHHHHCCTTC----EEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred eccchhhhhhhhcccccccc----ccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEe
Confidence 99999999999999999999 99999999999999999999998865532 22222 235789999
Q ss_pred cCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC----CCCCCcEEEecCccccCCCCceEEEE
Q 012785 236 TSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT----YPADHDLMLFTVSKSTGHAGTRIGWA 298 (456)
Q Consensus 236 ~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~----~~~~~~i~i~S~SK~~g~~G~RiG~l 298 (456)
+|||||||.++++ +|++++++||+||+|.+..+ .+.. ...++++++.|+||.|+++|+|+||+
T Consensus 171 ~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~ 250 (394)
T d1c7na_ 171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI 250 (394)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred cccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccc
Confidence 9999999999993 78899999999999986322 2211 12468999999999999999999999
Q ss_pred EEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCcccc
Q 012785 299 LVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-GLFSVP 377 (456)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 377 (456)
+++++.+.+.+.........+.+...+.+++..... . .+++.++.++.++++++.+.+.++.. ..+.+.
T Consensus 251 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (394)
T d1c7na_ 251 IIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYK--E--------CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (394)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH--H--------CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred cccChhhhhhhhhhhhhccccccccccchhhhhhhc--c--------hhhhhcccccccchhhhhhhhhhhccccceeec
Confidence 998788888888877655555555545444433331 2 26788999999999999999998864 457788
Q ss_pred CCCCcccccccccCCCCCceEEeecCc---cHHH-HHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHH
Q 012785 378 ELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIED-CESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLS 452 (456)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~-~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~ 452 (456)
.|+|++ |+|++++. +... +..+++++||.++||+.||. +++|+|||++.++|+++++++||+
T Consensus 321 ~p~g~~-------------~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~ 387 (394)
T d1c7na_ 321 LIEGTY-------------LQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLN 387 (394)
T ss_dssp CCSBSS-------------EEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH
T ss_pred CCCcee-------------EEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 888888 89999863 4444 45566788999999999985 578999999888999999999999
Q ss_pred hhhC
Q 012785 453 KILS 456 (456)
Q Consensus 453 ~~l~ 456 (456)
++++
T Consensus 388 ~~l~ 391 (394)
T d1c7na_ 388 KALK 391 (394)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=8.7e-46 Score=371.71 Aligned_cols=330 Identities=15% Similarity=0.185 Sum_probs=255.2
Q ss_pred cCCCCeEEecCCCCCCCchhHhhhcccccccccC--ccccccccCCCCcccCCCHHHHHHHHHHHHHh-------cCccC
Q 012785 91 DGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPG--WQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVV-------GNAIT 161 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~-------g~~~~ 161 (456)
..+.++|+|+.|+|++..+........ .++... ......|++..| .++||++||+|+.+. +..+
T Consensus 27 ~~~~~vI~L~~G~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~Y~~~~G-----~~~LReaia~~~~~~~~~~~~~~~~~- 99 (412)
T d1bw0a_ 27 PSPKPIIKLSVGDPTLDKNLLTSAAQI-KKLKEAIDSQECNGYFPTVG-----SPEAREAVATWWRNSFVHKEELKSTI- 99 (412)
T ss_dssp CSCSCCEECCCCCTTTTSCSCCCHHHH-HHHHHHHHTTCSSSCCCTTC-----CHHHHHHHHHHHHHHHCCSTTTGGGC-
T ss_pred CCCCCcEECcCCCCCCCCCccccHHHH-HHHHHHhhCCCCCCCCCCcC-----CHHHHHHHHHHHHHhcCcccccCCCC-
Confidence 345679999999998765432211100 011111 111346999999 599999999999653 2334
Q ss_pred CCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc--------cc---cCCC
Q 012785 162 ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR--------FN---KDGP 230 (456)
Q Consensus 162 ~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~--------l~---~~~~ 230 (456)
++++|++|+|+++++.+++++++++|| +|++++|+|+.|...++..|++++.++++.++ ++ ..++
T Consensus 100 ~~~~I~it~G~~~al~~~~~~l~~~Gd----~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 175 (412)
T d1bw0a_ 100 VKDNVVLCSGGSHGILMAITAICDAGD----YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKT 175 (412)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHCCTTC----EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTE
T ss_pred CCCeEEEecccccchhhhhhhhhcccc----ceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccc
Confidence 467999999999999999999999999 99999999999999999999999988765432 22 2356
Q ss_pred eEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-----C------CCCCCCcEEEecCccccCCC
Q 012785 231 YIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-----I------TYPADHDLMLFTVSKSTGHA 291 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-----~------~~~~~~~i~i~S~SK~~g~~ 291 (456)
++++++|||||||.++++ +|++++++||+||+|.+..+.+ . .....++++++||||.++++
T Consensus 176 ~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~ 255 (412)
T d1bw0a_ 176 KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP 255 (412)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG
T ss_pred cccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccC
Confidence 899999999999999983 6788999999999998632211 1 12235689999999999999
Q ss_pred CceEEEEEEeC-----HHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 292 GTRIGWALVKD-----MEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 292 G~RiG~l~~~~-----~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
|+|+||+++++ ..++........ ...+.+...|..+...+. +. .++++++.++.++++|+.+.+
T Consensus 256 G~RvG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~r~~~~~ 324 (412)
T d1bw0a_ 256 GWRLGWLLYVDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALL---NT-------PQEHLDQIVAKIEESAMYLYN 324 (412)
T ss_dssp GGCCEEEEEECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHH---SS-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccchhhcchhhhhhhccccc-cccCCchhhhhhcccccc---cc-------cccccccccchhHHHHHHHHH
Confidence 99999999973 234444444433 345666777776666655 23 378999999999999999999
Q ss_pred HHHhcCCccccCCCCcccccccccCCCCCceEEeecC--------ccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEec
Q 012785 367 AVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE--------QEIEDCESFLKGNKILTRSGKHFGFSPKYVRISML 438 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~--------~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~ 438 (456)
.|.+..++.+..|+||+ |+|++++ .+.+.+.++++++||.+.||+.||. +++|||||+
T Consensus 325 ~l~~~~g~~~~~p~gg~-------------~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~-~g~iRis~~ 390 (412)
T d1bw0a_ 325 HIGECIGLAPTMPRGAM-------------YLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-PGFTRLTTT 390 (412)
T ss_dssp HHTTSTTEEECCCCBTT-------------EEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-TTEEEEECC
T ss_pred HHHHhcCceecCCCCce-------------EEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCC-CCeEEEEEc
Confidence 99887778888899998 8998875 1345667777889999999999985 789999998
Q ss_pred CChhHHHHHHHHHHhhhC
Q 012785 439 DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 439 ~~~e~i~~~l~~L~~~l~ 456 (456)
.++|+++++++||+++++
T Consensus 391 ~~~e~l~eal~Rl~~~l~ 408 (412)
T d1bw0a_ 391 RPVEVYREAVERIKAFCQ 408 (412)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 899999999999999863
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.9e-46 Score=373.38 Aligned_cols=340 Identities=16% Similarity=0.151 Sum_probs=271.9
Q ss_pred cccccccchhhhcCCCCeEEecCCCCCCCchh--HhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-H
Q 012785 79 SSSLTSTDIQSQDGGERIINVDHGDPTMYEKY--WQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-V 155 (456)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~ 155 (456)
+.++++.+. ..++++|+|+.|.|+....| .+.+. ...++.........|+++.| .++||++||+|+. .
T Consensus 26 s~ir~~~~~---~~~~~~I~l~~G~Pd~~~~P~~~~~~~-~~~~~~~~~~~~~~Y~~~~G-----~~~LR~aia~~~~~~ 96 (420)
T d1vp4a_ 26 SIIREILKF---AADKDAISFGGGVPDPETFPRKELAEI-AKEIIEKEYHYTLQYSTTEG-----DPVLKQQILKLLERM 96 (420)
T ss_dssp CCHHHHTTT---TTSTTCEECCCCSCCGGGSCHHHHHHH-HHHHHHHSHHHHTSCCCTTC-----CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH---hCCCCcEecCCcCCCCccCCHHHHHHH-HHHHHhhCCccccCCCCCcC-----CHHHHHHHHHHHHHH
Confidence 456665544 35678999999998754322 12221 11222222222346999999 5999999999995 4
Q ss_pred hcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcccccc--------
Q 012785 156 VGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFNK-------- 227 (456)
Q Consensus 156 ~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~-------- 227 (456)
+|....++++|++|+|+++++.+++.+++.+|| .|++++|+|+.|...++..|.+++.++.|.+++..
T Consensus 97 ~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd----~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 172 (420)
T d1vp4a_ 97 YGITGLDEDNLIFTVGSQQALDLIGKLFLDDES----YCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLS 172 (420)
T ss_dssp HCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHH
T ss_pred hCCCCCCHHHeEeccchhhhHHHHHHhhhcccc----ccccccccccchhHHHHHHhhhcccccccccccccchhhhhhh
Confidence 676655678999999999999999999999999 99999999999999999999999888765443310
Q ss_pred ---------CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-----CC--CCCCCcEEEec
Q 012785 228 ---------DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-----IT--YPADHDLMLFT 283 (456)
Q Consensus 228 ---------~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-----~~--~~~~~~i~i~S 283 (456)
....++++++||||||.++++ +|+++++++|+||+|.+..+.+ .. ...+++++++|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s 252 (420)
T d1vp4a_ 173 EFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT 252 (420)
T ss_dssp HHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred hhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEec
Confidence 123466789999999999983 7899999999999998643321 11 34678999999
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
+||.++ +|+|+||++++ +++++++.+.......+++.+.|.+++.++.. + ...++++..++.++++++.
T Consensus 253 ~sk~~~-~G~RiG~~~~~-~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~---~------~~~~~~~~~~~~~~~~~~~ 321 (420)
T d1vp4a_ 253 FSKVLA-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLER---Y------DLLEQLKPTIELYRRKRTV 321 (420)
T ss_dssp STTTTC-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH---S------CHHHHTHHHHHHHHHHHHH
T ss_pred cccccc-ccccccccccc-chhhhhhhhhhhhccccCchhhhhhhhhhccc---c------cccccchhHHHHhhhhccc
Confidence 999875 99999999996 99999999998888899999999999998873 3 2467888889999999999
Q ss_pred HHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEE
Q 012785 364 LRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVR 434 (456)
Q Consensus 364 l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iR 434 (456)
+.+.|++. +++++..|+|++ |+|+++++ +...+.++|+++||.+.||+.|+. ..+++|
T Consensus 322 ~~~~L~~~~~~~~g~~~~~p~gg~-------------f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iR 388 (420)
T d1vp4a_ 322 MLNALEEYFSDIPGVKWVKSEGGL-------------FIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMR 388 (420)
T ss_dssp HHHHHHHHSTTSTTCEECCCSBSS-------------EEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEE
T ss_pred chhhhhhhhccCCCcEEecCCceE-------------EEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEE
Confidence 99888764 467888888888 99999974 456677889999999999999974 367999
Q ss_pred EEecC-ChhHHHHHHHHHHhhh
Q 012785 435 ISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 435 is~~~-~~e~i~~~l~~L~~~l 455 (456)
|||+. ++|++++++++|++++
T Consensus 389 ls~~~~~~e~l~~a~~rL~~~l 410 (420)
T d1vp4a_ 389 LSFCLPPDEKIVEGIKRLREVV 410 (420)
T ss_dssp EECSSSCHHHHHHHHHHHHHHH
T ss_pred EEeCcCCHHHHHHHHHHHHHHH
Confidence 99975 7889999999999886
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.7e-45 Score=359.31 Aligned_cols=316 Identities=17% Similarity=0.236 Sum_probs=264.2
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
.++|||+.|+|++++|+.+.++.. ..+ .. ...|+++.| .++||++||++++. ++++|++|+|++
T Consensus 25 ~~~I~ls~g~p~~~~p~~i~~al~-~~l-~~---~~~Y~~~~G-----~~elr~aiA~~~~~------~~~~Iiit~G~~ 88 (368)
T d1v2da_ 25 LGAVNLGQGFPSNPPPPFLLEAVR-RAL-GR---QDQYAPPAG-----LPALREALAEEFAV------EPESVVVTSGAT 88 (368)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHH-HHT-TT---SCSCCCTTC-----CHHHHHHHHHHHTS------CGGGEEEESSHH
T ss_pred CCCEEecCCCCCCCCCHHHHHHHH-HHh-hc---ccCCCCCcC-----CHHHHHHHHhhccc------CCcceeeccchH
Confidence 468999999999998887775422 112 22 346999999 59999999999874 568999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc---------Ccccccc---CCCeEEEEcCCCCC
Q 012785 174 QLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG---------DAKRFNK---DGPYIELVTSPNNP 241 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~---------d~~~l~~---~~~~~i~v~~P~NP 241 (456)
+++..++.+++.+|| .|++++|+|+.+...++..|.+++.+++ |.+.++. .++++++++|||||
T Consensus 89 ~al~~~~~~l~~~~d----~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NP 164 (368)
T d1v2da_ 89 EALYVLLQSLVGPGD----EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNP 164 (368)
T ss_dssp HHHHHHHHHHCCTTC----EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTT
T ss_pred HHHHHHhhccccccc----cccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCc
Confidence 999999999999999 9999999999999999999998875544 3333332 35688999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCCCCC-----CCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-----ITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-----~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.+++. +|+++++++|+||+|....... .....++++++.|+||.++++|+|+||++++ +++++.
T Consensus 165 tG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~-~~~~~~ 243 (368)
T d1v2da_ 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGP-KEFMPR 243 (368)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECC-TTTHHH
T ss_pred ccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeeccccccccccccccccccc-ccccch
Confidence 9999982 7899999999999997522211 1235678999999999999999999999997 899999
Q ss_pred HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 309 l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
+.+.+.....+++.+.|.++..++.... ..++++..++.++++++.+.+.|++++ +.+..|+|++
T Consensus 244 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~p~g~~----- 308 (368)
T d1v2da_ 244 LAGMRQWTSFSAPTPLQAGVAEALKLAR---------REGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTY----- 308 (368)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHHH---------HTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSS-----
T ss_pred hhhhhhcccccccccccccccccccccc---------chhhHHHHHHHHHHhhhhhhhhHHhcC-cEEecCCcee-----
Confidence 9999888899999999999999887422 356899999999999999999999885 7788888887
Q ss_pred ccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 389 RAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
|+|++++. .+..++++++||.++||+.|+. .+++||||++.++|++++++++|+++|
T Consensus 309 --------~~~~~l~~--~~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 309 --------FLMAELPG--WDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp --------EEEEECTT--CCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred --------EEEEeCCc--cHHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 99999974 2345678899999999999963 578999999889999999999999985
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=1.3e-44 Score=362.03 Aligned_cols=339 Identities=14% Similarity=0.098 Sum_probs=271.0
Q ss_pred ccccccchhhhcCCCCeEEecCCCCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-Hh
Q 012785 80 SSLTSTDIQSQDGGERIINVDHGDPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VV 156 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~ 156 (456)
.++++.+. ...+++|||+.|.|+.... +.+... ...++.........|++..| .++||++||+|++ .+
T Consensus 18 ~ire~~~~---~~~~~~i~l~~G~P~~~~~P~~~~~~~-~~~~~~~~~~~~~~Y~~~~G-----~~~lR~aia~~l~~~~ 88 (403)
T d1wsta1 18 EVRELLKL---VETSDVISLAGGLPAPETFPVETIKKI-AVEVLEEHADKALQYGTTKG-----FTPLRLALARWMEKRY 88 (403)
T ss_dssp HHHHHHHH---HTSSSCEECCCCCCCGGGSCHHHHHHH-HHHHHHHSHHHHHSCCCSSC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hCCCCcEECCCCCCCccccCHHHHHHH-HHHHHHhCcccccCCCCCcC-----CHHHHHHHHHHHHHHh
Confidence 34444443 3456899999999875432 222221 11212222222346999999 5999999999996 46
Q ss_pred cCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccc----------
Q 012785 157 GNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFN---------- 226 (456)
Q Consensus 157 g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~---------- 226 (456)
|..+. +++|++|+|+++++.+++.++.++|| +|++++|+|+.+...++..|.+++.++.|.+...
T Consensus 89 g~~~~-~~~I~it~G~~~al~~~~~~l~~~gd----~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~ 163 (403)
T d1wsta1 89 DIPMS-KVEIMTVAGSQQALDLIGRVFLNPGD----PIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEE 163 (403)
T ss_dssp CCCCT-TCEEEEESSHHHHHHHHHHHHCCTTC----EEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHH
T ss_pred CCCCC-hHHeeecccchHHHHHHHHHHhhcCC----ccccCCCcchhhhHHHhhccccceeEeecccCCccccccccchh
Confidence 76665 67999999999999999999999999 9999999999999999999999988776543210
Q ss_pred ---c--CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCC-----CCCC--CCCCCcEEEecCcc
Q 012785 227 ---K--DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQY-----TSIT--YPADHDLMLFTVSK 286 (456)
Q Consensus 227 ---~--~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~-----~~~~--~~~~~~i~i~S~SK 286 (456)
. ....++++++||||||.+++. +|++++++||+||+|.+..+ .++. ...+++++++||||
T Consensus 164 ~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK 243 (403)
T d1wsta1 164 LRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSK 243 (403)
T ss_dssp HHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTT
T ss_pred hhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccc
Confidence 1 134677889999999999983 78999999999999985322 2222 34678999999999
Q ss_pred ccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
.++ ||+|+||++++ +++++.+.........+.+...|.+.+.++. .. ..++++++.++.++++++.+.+
T Consensus 244 ~~~-~G~RiG~~i~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~~~ 312 (403)
T d1wsta1 244 ILA-PGFRIGWVAAH-PHLIRKMEIAKQSIDLCTNTFGQAIAWKYVE---NG------YLDEHIPKIIEFYKPRRDAMLE 312 (403)
T ss_dssp TTC-GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH---TT------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eec-Ccccccccccc-hHHHHHHHHHHhhhccccccchhhhHHhhhh---cc------ccchhHHHHHHHHHHHHHHHHH
Confidence 996 99999999997 9999999988887889999999999888777 23 2478889999999999999999
Q ss_pred HHHhc--CCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCC---CCCeEEEEecC
Q 012785 367 AVQKS--GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGF---SPKYVRISMLD 439 (456)
Q Consensus 367 ~L~~~--~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~---~~~~iRis~~~ 439 (456)
.|.+. .++.+..|.|++ |+|+++++ +.+.+.++|+++||.++||+.|+. .++++||+++.
T Consensus 313 ~L~~~~~~~~~~~~p~gg~-------------~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~ 379 (403)
T d1wsta1 313 ALEEYMPEGVEWTKPEGGM-------------FVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY 379 (403)
T ss_dssp HHHHHCCTTCEECCCSBSS-------------EEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred HHHhhccCCeEEeCCCcee-------------EEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC
Confidence 99875 356778888888 99999975 567788889999999999999964 46899999985
Q ss_pred -ChhHHHHHHHHHHhhhC
Q 012785 440 -RDENYNLFVQRLSKILS 456 (456)
Q Consensus 440 -~~e~i~~~l~~L~~~l~ 456 (456)
+++++++++++|+++++
T Consensus 380 ~~~~~l~~al~rl~~~l~ 397 (403)
T d1wsta1 380 VPEETIREGVRRLAETIK 397 (403)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 88999999999998863
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=1.5e-43 Score=357.03 Aligned_cols=332 Identities=19% Similarity=0.312 Sum_probs=254.3
Q ss_pred cCCCCeEEecCCCCCCCch---hHhhhcccccc---cccCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCcc-CC
Q 012785 91 DGGERIINVDHGDPTMYEK---YWQKVGDKTTI---VIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAI-TE 162 (456)
Q Consensus 91 ~~~~~~i~l~~g~p~~~~~---~~~~~~~~~~~---~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~-~~ 162 (456)
.++.++|+|+.+++..... +|+........ .......+..|++..| .++||++||+|++. +|... .+
T Consensus 33 ~np~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G-----~~~LR~aiA~~l~~~~~~~~~~~ 107 (428)
T d1iaya_ 33 KNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHG-----LPEFRKAIAKFMEKTRGGRVRFD 107 (428)
T ss_dssp SSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTC-----CHHHHHHHHHHHHHHTTTCSCCC
T ss_pred CCCCceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcc-----hHHHHHHHHHHHHHHhCCCCCCC
Confidence 3456799999999876432 22222111111 1111223467999999 59999999999965 44332 24
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh-cCCeEeeeccCc--------cccc-------
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC-VKSRLYKWAGDA--------KRFN------- 226 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~-~g~~~~~~~~d~--------~~l~------- 226 (456)
+++|++|+|+++++.+++.+++.+|| +|++++|+|+.+...+.. .|++++.++.+. +.++
T Consensus 108 ~e~Ivit~G~~~al~~~~~~l~~~Gd----~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~ 183 (428)
T d1iaya_ 108 PERVVMAGGATGANETIIFCLADPGD----AFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQ 183 (428)
T ss_dssp TTSCEEEEHHHHHHHHHHHHHCCTTC----EEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHH
T ss_pred hhhEEEcCCHHHHHHHHHHHhCCCCC----EEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhh
Confidence 67999999999999999999999999 999999999999887764 588888776543 2221
Q ss_pred --cCCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCC-----CCCCC----------CCCCCCcEEE
Q 012785 227 --KDGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWP-----QYTSI----------TYPADHDLML 281 (456)
Q Consensus 227 --~~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~-----~~~~~----------~~~~~~~i~i 281 (456)
..++++++++|||||||.+++. +|++++++||+||+|.+. .+.++ ....++++++
T Consensus 184 ~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~ 263 (428)
T d1iaya_ 184 KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIV 263 (428)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred ccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEE
Confidence 1256889999999999999983 789999999999999742 22221 1245789999
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
+||||.|+++|+|+||++++++.+.+.++.... ...++...|.++.+.+... . ..++++++.++.+++++
T Consensus 264 ~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~a~l~~~--~------~~~~~~~~~~~~l~~r~ 333 (428)
T d1iaya_ 264 YSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS--FGLVSTQTQYFLAAMLSDE--K------FVDNFLRESAMRLGKRH 333 (428)
T ss_dssp EESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT--TSCCCHHHHHHHHHHTTCH--H------HHHHHHHHHHHHHHHHH
T ss_pred ecCCCcccCCCcccccccccccchhhhhhhhhc--ccccccccccchhhhhhhh--c------cccccccccccccchhH
Confidence 999999999999999999976778877776654 4556778888777766521 1 13568888999999999
Q ss_pred HHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------cHHHHHHHHHhCCEEeecCCCCCC-CCC
Q 012785 362 KQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------EIEDCESFLKGNKILTRSGKHFGF-SPK 431 (456)
Q Consensus 362 ~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~l~~~gI~v~pg~~fg~-~~~ 431 (456)
+.+.+.|+..+ +++..|+|++ |+|++++. +.+.+.++++++||.+.||+.|+. +++
T Consensus 334 ~~~~~~L~~~g-i~~~~p~gg~-------------f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g 399 (428)
T d1iaya_ 334 KHFTNGLEVVG-IKCLKNNAGL-------------FCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPG 399 (428)
T ss_dssp HHHHHHHHHTT-CCBCCCSSSS-------------EEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSS
T ss_pred HHHHHHHHhCC-CEEecCCcce-------------EEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCC
Confidence 99999998765 7788889998 99999852 123455667789999999999985 689
Q ss_pred eEEEEecC-ChhHHHHHHHHHHhhh
Q 012785 432 YVRISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~~-~~e~i~~~l~~L~~~l 455 (456)
||||+|+. ++++++++++||+++|
T Consensus 400 ~~Ris~a~~~~~~l~~al~Rl~~~l 424 (428)
T d1iaya_ 400 WFRVCFANMDDGTVDIALARIRRFV 424 (428)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999986 6778999999999986
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-44 Score=351.47 Aligned_cols=322 Identities=14% Similarity=0.139 Sum_probs=249.0
Q ss_pred eEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHH-HhcCccCCCceEEEccCHHH
Q 012785 96 IINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHK-VVGNAITENHHIVVGTGSTQ 174 (456)
Q Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~I~~t~G~~~ 174 (456)
+|+|++|+|+|++|+.+.++.. .++..+ ...|++..| +++|++|++++. ++|..++ +++|++|+|+++
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~-~~~~~~---~~~Y~~~~g------~~lr~~ia~~~~~~~g~~~~-~~~i~it~G~~~ 69 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALN-QRLMHG---VFGYSRWKN------DEFLAAIAHWFSTQHYTAID-SQTVVYGPSVIY 69 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHH-HHHTTC---CCCCCCSCC------HHHHHHHHHHHHHHSCCCCC-GGGEEEESCHHH
T ss_pred CcCcCCCCCCCCCCHHHHHHHH-HHHhCC---CCCCCCCCC------HHHHHHHHHHHHHHhCCCCC-cceEEEeCCHHH
Confidence 5899999999999988876533 223333 236888888 889999999985 4577775 579999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC---------ccccc----cCCCeEEEEcCCCCC
Q 012785 175 LFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD---------AKRFN----KDGPYIELVTSPNNP 241 (456)
Q Consensus 175 al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d---------~~~l~----~~~~~~i~v~~P~NP 241 (456)
++..++.+++++|| +|++++|+|+.|...++..|.+++.++.+ .+.++ ..++++++++|||||
T Consensus 70 ~l~~~~~~l~~~gd----~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NP 145 (361)
T d1d2fa_ 70 MVSELIRQWSETGE----GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNP 145 (361)
T ss_dssp HHHHHHHHSSCTTC----EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTT
T ss_pred HHHHHhhhcccccc----ccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccc
Confidence 99999999999999 99999999999999999999998766543 22222 236789999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCCCC-----CCC-CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHH
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQYT-----SIT-YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAK 307 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~~~-----~~~-~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~ 307 (456)
||.+++. +|+++++++|+||+|.+..+. ++. ...++++++.|+||.++++|+|+||++++++...+
T Consensus 146 TG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~ 225 (361)
T d1d2fa_ 146 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRD 225 (361)
T ss_dssp TCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHH
T ss_pred cccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHH
Confidence 9999982 788999999999999863221 221 34578999999999999999999999887555555
Q ss_pred HHHHH-HhhccC-cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCCccc
Q 012785 308 KMTKY-IELNTI-GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS-GLFSVPELPSQFC 384 (456)
Q Consensus 308 ~l~~~-~~~~~~-~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~g~~~ 384 (456)
.+... ...... +++...+.++...+. .. +++.++.+..+++|++.+.+.+.+. ..+.+..|+|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~--------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~- 293 (361)
T d1d2fa_ 226 AYLSALKGRDGLSSPSVLALTAHIAAYQ---QG--------APWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTY- 293 (361)
T ss_dssp HHHHHHHTTSCCCSCCHHHHHHHHHHHH---HC--------HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCS-
T ss_pred HHhhhcccccccccchhhhHHHHHHHhh---cc--------chhhhcccccchhhHHHHHHHhhhhcccccccccCcee-
Confidence 44433 332222 233333433333333 22 6788899999999999998887664 457777888888
Q ss_pred ccccccCCCCCceEEeecCc---cH-HHHHHHHHhCCEEeecCCCCCC-CCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 385 TFLGRAFEPQPAFAWLKCEQ---EI-EDCESFLKGNKILTRSGKHFGF-SPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 385 ~~~~~~~~~~~~f~~~~~~~---~~-~~~~~~l~~~gI~v~pg~~fg~-~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
|+|++++. +. +.+.++++++||.+.||+.|+. ++++||||++.++|++++++++|+++++
T Consensus 294 ------------~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~ 358 (361)
T d1d2fa_ 294 ------------LAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIR 358 (361)
T ss_dssp ------------EEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ------------EEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 89998852 44 4455566788999999999985 5789999998789999999999998863
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=2.6e-43 Score=355.60 Aligned_cols=332 Identities=20% Similarity=0.302 Sum_probs=251.6
Q ss_pred CCCCeEEecCCCCCCCch---hHhhhcccccccc----cCccccccccCCCCcccCCCHHHHHHHHHHHHH-hcCcc-CC
Q 012785 92 GGERIINVDHGDPTMYEK---YWQKVGDKTTIVI----PGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKV-VGNAI-TE 162 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~---~~~~~~~~~~~~~----~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~-~g~~~-~~ 162 (456)
++.++|+|+.+++.+... +|+.......... +.......|++..| .++||++||+|++. +|... .+
T Consensus 34 np~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G-----~~~LR~aiA~~l~~~~~~~~~~~ 108 (431)
T d1m7ya_ 34 NTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHG-----LPAFKKAMVDFMAEIRGNKVTFD 108 (431)
T ss_dssp CTTSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTC-----CHHHHHHHHHHHHHHTTTSSCCC
T ss_pred CCCcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcC-----cHHHHHHHHHHHHHHhCCCCCCC
Confidence 456799999999876532 2332211111111 11123457999999 59999999999965 44322 24
Q ss_pred CceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh-cCCeEeeeccCccc--------ccc------
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC-VKSRLYKWAGDAKR--------FNK------ 227 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~-~g~~~~~~~~d~~~--------l~~------ 227 (456)
+++|++|+|+++++.+++.+++++|| +|++++|+|+.+...+.. .|+++++++++.+. ++.
T Consensus 109 pe~I~it~G~~~al~~~~~~l~~pGd----~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~ 184 (431)
T d1m7ya_ 109 PNHLVLTAGATSANETFIFCLADPGE----AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAE 184 (431)
T ss_dssp GGGEEEEEHHHHHHHHHHHHHCCTTC----EEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHH
T ss_pred cceEEECCCHHHHHHHHHHHhcCCCC----EEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhh
Confidence 68999999999999999999999999 999999999999988875 57888877665432 211
Q ss_pred ---CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCC-----CCCCC------------CCCCCCcE
Q 012785 228 ---DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWP-----QYTSI------------TYPADHDL 279 (456)
Q Consensus 228 ---~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~-----~~~~~------------~~~~~~~i 279 (456)
.++++++++|||||||.++++ +|++++++||+||+|.+. .+.++ ....++++
T Consensus 185 ~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi 264 (431)
T d1m7ya_ 185 KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVH 264 (431)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEE
T ss_pred hccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEE
Confidence 256889999999999999983 688999999999999742 22221 12236899
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
+++||||.||++|+|+||++++++.+.+.+.... ...+++...|.++.+.+.... ..++++++.++.+++
T Consensus 265 ~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~a~l~~~~--------~~~~~~~~~~~~~~~ 334 (431)
T d1m7ya_ 265 VVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--SFGLVSSQTQHLLSAMLSDKK--------LTKNYIAENHKRLKQ 334 (431)
T ss_dssp EEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG--GGSCCCHHHHHHHHHHHHCHH--------HHHHHHHHHHHHHHH
T ss_pred EEecCcccccCCCCccceeccchhhhHHHHHHHh--ccccccccccchhhhhhccch--------hhhhhhhhhhhhhhh
Confidence 9999999999999999999997444444444333 356677788888777776321 135789999999999
Q ss_pred HHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---------cHHHHHHHHHhCCEEeecCCCCCC-C
Q 012785 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---------EIEDCESFLKGNKILTRSGKHFGF-S 429 (456)
Q Consensus 360 ~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---------~~~~~~~~l~~~gI~v~pg~~fg~-~ 429 (456)
+++.+.+.|++.+ +++.+|+||+ |+|++++. +.+.+.++++++||.+.||+.|+. +
T Consensus 335 ~~~~l~~~L~~~g-i~~~~p~gg~-------------f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~ 400 (431)
T d1m7ya_ 335 RQKKLVSGLQKSG-ISCLNGNAGL-------------FCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE 400 (431)
T ss_dssp HHHHHHHHHHTTT-CEECCCCSSS-------------EEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS
T ss_pred hhhhhhhhhhcCC-cEEecCCcee-------------EEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCC
Confidence 9999999998754 7888888988 99999853 123456677889999999999975 6
Q ss_pred CCeEEEEecC-ChhHHHHHHHHHHhhhC
Q 012785 430 PKYVRISMLD-RDENYNLFVQRLSKILS 456 (456)
Q Consensus 430 ~~~iRis~~~-~~e~i~~~l~~L~~~l~ 456 (456)
++|+||+|+. ++++++++++||+++++
T Consensus 401 ~~~~Ri~~a~~~e~~l~~al~rL~~~l~ 428 (431)
T d1m7ya_ 401 PGWFRVCFANLPERTLDLAMQRLKAFVG 428 (431)
T ss_dssp TTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCcCCHHHHHHHHHHHHHHHH
Confidence 7899999986 67789999999999873
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.3e-42 Score=339.86 Aligned_cols=312 Identities=17% Similarity=0.240 Sum_probs=248.9
Q ss_pred CCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccC
Q 012785 92 GGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTG 171 (456)
Q Consensus 92 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G 171 (456)
.+.++|||+.|.|++++|+.+.+. +.+......+|+++.+ ++||++||++++. ++++|++|+|
T Consensus 20 ~p~~~idls~~~np~~~p~~~~~a-----~~~~~~~~~~Yp~~~~------~~Lr~aia~~~~v------~~~~I~~~~g 82 (355)
T d1lc5a_ 20 SPDQLLDFSANINPLGMPVSVKRA-----LIDNLDCIERYPDADY------FHLHQALARHHQV------PASWILAGNG 82 (355)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHH-----HHHTGGGGGSCCCTTC------HHHHHHHHHHHTS------CGGGEEEESS
T ss_pred ChhheEEccCCCCCCCCCHHHHHH-----HHHHHHHhccCCCCCh------HHHHHHHHHHhCC------CHHHEEeccc
Confidence 445789999998877777666543 2222233456877654 9999999999964 5689999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc-ccc---------cCCCeEEEEcCCCCC
Q 012785 172 STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK-RFN---------KDGPYIELVTSPNNP 241 (456)
Q Consensus 172 ~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~l~---------~~~~~~i~v~~P~NP 241 (456)
+++++.+++.++. ++ .+++..|+|+.|.......+.++..++++.+ ++. ..++++++++|||||
T Consensus 83 ~~~~~~~~~~~~~--~~----~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NP 156 (355)
T d1lc5a_ 83 ETESIFTVASGLK--PR----RAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNP 156 (355)
T ss_dssp HHHHHHHHHHHHC--CS----EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTT
T ss_pred HHHHHHHHHhhhc--cc----cccccCCccceeccccccccccceeeeeeccCCccceeeeeeccccccceeeeecccCc
Confidence 9999998887664 34 6778889999999999999999888776533 221 136789999999999
Q ss_pred CcccchH--------HhhhcCcEEEeeecCCCCC-----CCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHH
Q 012785 242 DGSVRQS--------VVNRSGGILVHDLAYYWPQ-----YTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKK 308 (456)
Q Consensus 242 tG~~~~~--------l~~~~~~~iI~De~y~~~~-----~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~ 308 (456)
||.++++ +|+++++++|+||+|.+.. ........+++|+++||||.+|+||+|+||++++++.+.+.
T Consensus 157 tG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~ 236 (355)
T d1lc5a_ 157 TGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMAR 236 (355)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHH
T ss_pred ccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHH
Confidence 9999883 6789999999999998522 12233456789999999999999999999999986666666
Q ss_pred HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccc
Q 012785 309 MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLG 388 (456)
Q Consensus 309 l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~ 388 (456)
++... ..+..+.++|.++..+|+ + .+++++.++.++++++.+.+.|.+++++.+. |.++
T Consensus 237 ~~~~~--~~~~~~~~~~~~a~~~l~---~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~------ 295 (355)
T d1lc5a_ 237 MRRQQ--MPWSVNALAALAGEVALQ---D---------SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRA------ 295 (355)
T ss_dssp HHHHS--CTTCSCHHHHHHHHHGGG---C---------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSS------
T ss_pred HHhhc--CCcccccccccccccccc---c---------cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCC------
Confidence 66543 467889999999999887 2 5788889999999999999999998765543 3344
Q ss_pred ccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC-CCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 389 RAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG-FSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 389 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg-~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
+|+|++++.+...+.+.|+++||.|+||+.|+ .+++++||++ .+++++++++++|+++|
T Consensus 296 -------~f~~~~~~~~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~-~~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 296 -------NYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI-RSAAQNERLLAALRNVL 355 (355)
T ss_dssp -------SEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC-CCHHHHHHHHHHHHHHC
T ss_pred -------EEEEEECCCCHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEe-CCHHHHHHHHHHHHHhC
Confidence 48999998766677888889999999999995 4688999998 47899999999999986
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-42 Score=338.98 Aligned_cols=308 Identities=17% Similarity=0.209 Sum_probs=248.1
Q ss_pred hcCCCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEc
Q 012785 90 QDGGERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVG 169 (456)
Q Consensus 90 ~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t 169 (456)
+..++++|+|+.|+|++++|+.+.++.. +.+..+ .+++|++ .| .++||++||+|++..+ + ++++|++|
T Consensus 15 ~~~~~d~~~l~~~enp~~~p~~i~~~~~-~~~~~~--~~~~yp~-~g-----~~~Lr~aia~~~~~~~--v-~~d~I~it 82 (334)
T d2f8ja1 15 ETEKRDKTYLALNENPFPFPEDLVDEVF-RRLNSD--ALRIYYD-SP-----DEELIEKILSYLDTDF--L-SKNNVSVG 82 (334)
T ss_dssp CCCCCCSEECSSCCCSSCCCHHHHHHHH-HHCCTT--GGGSCCC-SS-----CHHHHHHHHHHHTCSS--C-CGGGEEEE
T ss_pred cccCCCceEEECCCCCCCCCHHHHHHHH-HHhhcc--hhcCCCC-CC-----cHHHHHHHHHHhcccC--C-CcceEEec
Confidence 3456789999999999888876665322 222222 2446654 57 5999999999997654 2 35799999
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccccc----cCCCeEEEEcCCCCCCccc
Q 012785 170 TGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRFN----KDGPYIELVTSPNNPDGSV 245 (456)
Q Consensus 170 ~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~----~~~~~~i~v~~P~NPtG~~ 245 (456)
+|++++|+++++. +| +|++++|+|+.|...++.+|++++.++.|.+... ..++++++++|||||||.+
T Consensus 83 ~G~~~~l~~l~~~----~d----~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~ 154 (334)
T d2f8ja1 83 NGADEIIYVMMLM----FD----RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHV 154 (334)
T ss_dssp EHHHHHHHHHHHH----SS----EEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCC
T ss_pred CcchhHHHHHhhh----cc----ccccccccccccccchhccCCccccccccccccccccccccceEEEeccccccccee
Confidence 9999999887764 57 9999999999999999999999999988765432 2367999999999999999
Q ss_pred chH----HhhhcCcEEEeeecCCCCCCC---CCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccC
Q 012785 246 RQS----VVNRSGGILVHDLAYYWPQYT---SITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTI 318 (456)
Q Consensus 246 ~~~----l~~~~~~~iI~De~y~~~~~~---~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~ 318 (456)
+++ -+.++++++|+||+|++.... ......+++|+++||||+++++|+|+||++++ +++++++...+. ..
T Consensus 155 ~s~~~l~~~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~-~~~i~~l~~~~~--~~ 231 (334)
T d2f8ja1 155 FEREEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRL--PF 231 (334)
T ss_dssp CCHHHHHHHHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEEC-HHHHHHHHHHSC--TT
T ss_pred ecHHHhhccccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccc-hHHHHHHHHhhc--cc
Confidence 984 345689999999999863222 22245689999999999999999999999996 999999988864 67
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceE
Q 012785 319 GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFA 398 (456)
Q Consensus 319 ~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~ 398 (456)
+++.++|.++.+.+.. .+++++.++.++++|+.+.+.|++++ +++.+++| +|+
T Consensus 232 ~~s~~~~~~a~~~l~~------------~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~~~g--------------~f~ 284 (334)
T d2f8ja1 232 NVSYVSQMFAKVALDH------------REIFEERTKFIVEERERMKSALREMG-YRITDSRG--------------NFV 284 (334)
T ss_dssp CSCHHHHHHHHHHHHT------------HHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCS--------------SEE
T ss_pred ccchhhhhhccccccc------------ccchhhHHHHHHHHHHHHHHHHHHCC-CeECCCCc--------------eEE
Confidence 8899999999888872 67889999999999999999999986 55554443 378
Q ss_pred EeecCc-cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhh
Q 012785 399 WLKCEQ-EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKI 454 (456)
Q Consensus 399 ~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~ 454 (456)
|+.++. +.+.+.+.|+++||.|+++ +++||||+ .++|++++++++|+++
T Consensus 285 ~~~~~~~~~~~~~~~L~~~GI~vr~~------~~~vRis~-g~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 285 FVFMEKEEKERLLEHLRTKNVAVRSF------REGVRITI-GKREENDMILRELEVF 334 (334)
T ss_dssp EEECCHHHHHHHHHHHHHTTEECEEE------TTEEEEEC-CCHHHHHHHHHHHHHC
T ss_pred EEECCCCCHHHHHHHHHHCCCEECCC------CCeEEEEc-CCHHHHHHHHHHHhcC
Confidence 888864 5677888889999999873 57999999 5778889999999864
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-41 Score=334.72 Aligned_cols=307 Identities=17% Similarity=0.182 Sum_probs=242.5
Q ss_pred CCCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCH
Q 012785 93 GERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGS 172 (456)
Q Consensus 93 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~ 172 (456)
+...|.|+.+++++.+++.+. ... ++.||++.+ .+||++||++++. ++++|++|+|+
T Consensus 26 ~~~~i~L~~ne~p~~~~~~~~--------~~~---l~rYPd~~~------~~Lr~~ia~~~gv------~pe~I~it~Gs 82 (354)
T d1fg7a_ 26 GNGDVWLNANEYPTAVEFQLT--------QQT---LNRYPECQP------KAVIENYAQYAGV------KPEQVLVSRGA 82 (354)
T ss_dssp TTCSEECSSCCCSSCCCCCCC--------CCC---TTSCCCSSC------HHHHHHHHHHHTS------CGGGEEEESHH
T ss_pred CCCCEEeeCCCCCCCCCHHHH--------HHH---HhcCCCCcH------HHHHHHHHHHhCC------ChHHeeeccCc
Confidence 356799999986665442111 112 346988775 8999999999975 57899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc------Ccccccc--CCCeEEEEcCCCCCCcc
Q 012785 173 TQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG------DAKRFNK--DGPYIELVTSPNNPDGS 244 (456)
Q Consensus 173 ~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~------d~~~l~~--~~~~~i~v~~P~NPtG~ 244 (456)
+++|.+++++++.+||. .|+++.|+|+.|...++..|.+++.++. |.+.++. .++++++++|||||||.
T Consensus 83 ~eai~~~~~~~~~pgd~---~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~~~~~~v~~~~pnNPtG~ 159 (354)
T d1fg7a_ 83 DEGIELLIRAFCEPGKD---AILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQ 159 (354)
T ss_dssp HHHHHHHHHHHCCTTTC---EEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCTTEEEEEEESSCTTTCC
T ss_pred hHHHHHHHHHhhccccc---cccccccccccchhhhhccCceeeccccccccccchhhhhhcccccceeeccCCCcccee
Confidence 99999999999999983 5888999999999999999999986554 3344432 36789999999999999
Q ss_pred cchH-------HhhhcCcEEEeeecCCCCCC----CCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH
Q 012785 245 VRQS-------VVNRSGGILVHDLAYYWPQY----TSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI 313 (456)
Q Consensus 245 ~~~~-------l~~~~~~~iI~De~y~~~~~----~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~ 313 (456)
++++ .+.+++.++|+||+|++... .......+++++++||||.||++|+|+||++++ +++++.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~-~~~i~~l~~~~ 238 (354)
T d1fg7a_ 160 LINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVI 238 (354)
T ss_dssp CCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHS
T ss_pred EeeecccccccccccccccccccccchhhccccccchhhcccccceEEeCCccccCCCcccccccccc-chhhhhhhhhc
Confidence 9984 24457889999999986321 223356788999999999999999999999996 99999998776
Q ss_pred hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCC
Q 012785 314 ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEP 393 (456)
Q Consensus 314 ~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (456)
. .++++.+.|.++..++.. . ...+.....+.++++|+.+.+.|.+++.+....|.++
T Consensus 239 ~--~~~~~~~~~~~a~~~~~~---~-------~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~----------- 295 (354)
T d1fg7a_ 239 A--PYPLSTPVADIAAQALSP---Q-------GIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSET----------- 295 (354)
T ss_dssp C--SSCSCHHHHHHHHHHTSH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSS-----------
T ss_pred C--ccchhhHHHHHHHHHHhh---h-------ccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCc-----------
Confidence 4 677888888887776652 1 1345566677788889999999998876544444444
Q ss_pred CCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHh
Q 012785 394 QPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSK 453 (456)
Q Consensus 394 ~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~ 453 (456)
+|+|++++ +.+.+.+.|.++||+|++++.|+..++|+|||+ .++|+++.++++|+.
T Consensus 296 --~f~~~~~~-~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisi-gt~ee~~~~l~aLka 351 (354)
T d1fg7a_ 296 --NYILARFK-ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITV-GTREESQRVIDALRA 351 (354)
T ss_dssp --SEEEEEET-THHHHHHHHHHTTEECEECTTSTTCTTEEEEEC-CCHHHHHHHHHHHHT
T ss_pred --eEEEEeCC-CHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEe-CCHHHHHHHHHHHhh
Confidence 49999998 455677888899999999998865688999998 578889999999974
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=1.8e-39 Score=324.23 Aligned_cols=323 Identities=15% Similarity=0.104 Sum_probs=243.2
Q ss_pred CCCCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
..+++|||+.| +|+..++ +.++++.. .....+. ...|++..| .++||++|++++...+....++++|
T Consensus 26 ~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~-~~~~~~~--~~~Y~~~~G-----~~~lr~aia~~~~~~~~~~~~~~~i 97 (401)
T d7aata_ 26 TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEA-MIAAKKM--DKEYLPIAG-----LADFTRASAELALGENSEAFKSGRY 97 (401)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHH-HHHHTTC--CCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCE
T ss_pred CCCCcEEccCCCCcCCCCCCCCCHHHHHHHH-HHhhCCC--CCCCCCCCC-----CHHHHHHHHHHHhccCCcccCcCce
Confidence 34567999999 4554333 33433211 1122222 126999999 5999999999996544433345677
Q ss_pred EEccC-----HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc--------c----c--c
Q 012785 167 VVGTG-----STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR--------F----N--K 227 (456)
Q Consensus 167 ~~t~G-----~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~--------l----~--~ 227 (456)
+++.| +.+++..++++++++|| +|++++|+|+.|...++..|++++.++++.++ + . .
T Consensus 98 ~~~~~~~~~g~~~~~~~~~~~l~~pGd----~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (401)
T d7aata_ 98 VTVQGISGTGSLRVGANFLQRFFKFSR----DVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP 173 (401)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTCC----EEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC
T ss_pred EEeccchHHHHHHHHHHhhHhhcCCCc----eEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCC
Confidence 65543 34678888999999999 99999999999999999999999988763221 1 1 1
Q ss_pred CCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCCC----------CCCCCCcEEEecCccccC
Q 012785 228 DGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTSI----------TYPADHDLMLFTVSKSTG 289 (456)
Q Consensus 228 ~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~~----------~~~~~~~i~i~S~SK~~g 289 (456)
.+++++++++||||||.++++ +|++++++||+||+|.+..+.+. ....++++++.|+||.++
T Consensus 174 ~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 253 (401)
T d7aata_ 174 EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG 253 (401)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred CceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccce
Confidence 367899999999999999993 89999999999999997554321 134567899999999999
Q ss_pred CCCceEEEEEEeCHHHHHHHHH-------HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 290 HAGTRIGWALVKDMEVAKKMTK-------YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 290 ~~G~RiG~l~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
++|+|+||++++ ..+.+.+.+ .......+++.+.|.++...+..-.-. .+..++++.++++++++|+
T Consensus 254 ~~G~RiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~r~ 327 (401)
T d7aata_ 254 LYGERAGAFTVI-CRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELR-----KEWLVEVKGMADRIISMRT 327 (401)
T ss_dssp CGGGCEEEEEEE-CSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred eeccccceeecc-hHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 999999999998 544443333 233346788999999999888721100 0135677888999999999
Q ss_pred HHHHHHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 363 QLRMAVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 363 ~l~~~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
.+.+.|++++ .+.+..++||| |+|+++ +.+++.++++++||.+.||+ |||++.
T Consensus 328 ~l~~~L~~~~~~~~~~~~~~~~G~-------------F~~~~l--s~e~~~~L~~e~gV~~~pg~---------Ris~a~ 383 (401)
T d7aata_ 328 QLVSNLKKEGSSHNWQHITDQIGM-------------FCFTGL--KPEQVERLTKEFSIYMTKDG---------RISVAG 383 (401)
T ss_dssp HHHHHHHHTTCCSCCHHHHHCCSS-------------EEECCC--CHHHHHHHHHHHCEECCTTC---------EEEGGG
T ss_pred HHHHHHHHhCCCCCcceECCCCeE-------------EEecCC--CHHHHHHHHHhCCEEECCCc---------EEEecc
Confidence 9999999874 24556788888 999987 45678888899999999974 999986
Q ss_pred -ChhHHHHHHHHHHhhhC
Q 012785 440 -RDENYNLFVQRLSKILS 456 (456)
Q Consensus 440 -~~e~i~~~l~~L~~~l~ 456 (456)
++++++.+.++|.++++
T Consensus 384 ~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 384 VASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp CCTTTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 88999999999999875
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=4e-38 Score=315.49 Aligned_cols=323 Identities=12% Similarity=0.107 Sum_probs=237.4
Q ss_pred CCCCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
..+.+|||++| +|+..++ +.++++. +.+.........|++..| .++||+++++++...+.....++.+
T Consensus 27 ~~~~kInL~iG~~~d~~g~~~~~~~V~~A~--~~l~~~~~~~~~Y~p~~G-----~~~lr~aia~~~~~~~~~~~~~~~~ 99 (412)
T d1yaaa_ 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAE--KLIHNDSSYNHEYLGITG-----LPSLTSNAAKIIFGTQSDALQEDRV 99 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHH--HHHHTCTTCCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCE
T ss_pred CCCCcEEeecCCCcCCCCCCCCcHHHHHHH--HHHHhCcccCCCCCCCCC-----CHHHHHHHHHHHhcccCccccccce
Confidence 34457999999 5665543 3344321 122222222246999999 5999999999985544332223333
Q ss_pred E--EccCHHHHHHHHH--HHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------ccc------cC
Q 012785 167 V--VGTGSTQLFQAAL--YALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFN------KD 228 (456)
Q Consensus 167 ~--~t~G~~~al~~~~--~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~------~~ 228 (456)
+ .+.|+..++..++ ..+..+|| .|++++|+|+.|...++..|++++.++.+.+ .+. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~gd----~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (412)
T d1yaaa_ 100 ISVQSLSGTGALHISAKFFSKFFPDK----LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE 175 (412)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT
T ss_pred eEEecccchhHHHHHHHHHhccCCCC----EEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCCC
Confidence 3 3455555554444 34567999 9999999999999999999999987765221 111 12
Q ss_pred CCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-------------CCCCCCCcEEEecCccc
Q 012785 229 GPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-------------ITYPADHDLMLFTVSKS 287 (456)
Q Consensus 229 ~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-------------~~~~~~~~i~i~S~SK~ 287 (456)
+++++++++||||||.++++ +|+++++++|+||+|.+..+.. .....+++|++.||||.
T Consensus 176 ~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 255 (412)
T d1yaaa_ 176 GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKN 255 (412)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTT
T ss_pred ceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCc
Confidence 45788999999999999983 7899999999999998754422 12456789999999999
Q ss_pred cCCCCceEEEEEEeCHHHH-----------HHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVA-----------KKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~-----------~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
++++|+|+||+++++ +++ ..+......+..+++.+.|.++..++...... .++.++++.+++.
T Consensus 256 ~~~~G~RiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-----~~~~~~~~~~~~~ 329 (412)
T d1yaaa_ 256 AGMYGERVGCFHLAL-TKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELT-----EQWHKDMVTMSSR 329 (412)
T ss_dssp SCCGGGCEEEEEEEC-CSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHH-----HHHHHHHHHHHHH
T ss_pred cccCcCceEEEEEch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHH-----HHHHHHHHHHHHH
Confidence 999999999999983 222 22233344567889999999999988732110 0135678899999
Q ss_pred HHHHHHHHHHHHHhcCC---ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeE
Q 012785 357 MSTRWKQLRMAVQKSGL---FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYV 433 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~---~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~i 433 (456)
++++|+.+.+.|++++. +++..++||| |+|+++ +.+++.++++++||.+.||+
T Consensus 330 ~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~-------------F~~~~l--s~e~~~~L~~e~~V~~~~g~--------- 385 (412)
T d1yaaa_ 330 ITKMRHALRDHLVKLGTPGNWDHIVNQCGM-------------FSFTGL--TPQMVKRLEETHAVYLVASG--------- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCTHHHHCCSS-------------EEECCC--CHHHHHHHHHHHCEECCTTS---------
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeCCCceE-------------EEecCc--CHHHHHHHHHhCCEEECCCC---------
Confidence 99999999999998742 6667788888 999887 46778888999999999964
Q ss_pred EEEecC-ChhHHHHHHHHHHhhh
Q 012785 434 RISMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 434 Ris~~~-~~e~i~~~l~~L~~~l 455 (456)
|||++. ++++++.+.++|++++
T Consensus 386 Ris~~g~~~~~i~~l~~ai~~v~ 408 (412)
T d1yaaa_ 386 RASIAGLNQGNVEYVAKAIDEVV 408 (412)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHHHHH
Confidence 999986 8889999999988876
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-39 Score=321.88 Aligned_cols=321 Identities=11% Similarity=0.034 Sum_probs=238.0
Q ss_pred CCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEE
Q 012785 94 ERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVV 168 (456)
Q Consensus 94 ~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~ 168 (456)
++.|||+.| +|+..+| +.++++.. .+.........|++..| .++||+++++|+...+....++++|++
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~--~l~~~~~~~~~Y~p~~G-----~~~lR~aia~~~~~~~~~~~~~~~i~~ 98 (397)
T d3tata_ 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEA--RLNAQPHGASLYLPMEG-----LNCYRHAIAPLLFGADHPVLKQQRVAT 98 (397)
T ss_dssp SSCEECSCCSCCCTTSSCCCCHHHHHHHH--HHTTSCCSSBCCCCTTC-----CHHHHHHHHHHHTCSSCHHHHTTCEEE
T ss_pred CCcEEccCCCCcCCCCCCCCcHHHHHHHH--HHHhCcccCCCCCCccc-----CHHHHHHHHHHHhhccCCcCCcCcEEE
Confidence 456999999 5554433 33443321 12222222346999999 599999999999543333334678888
Q ss_pred ccCHHHH----HHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcccc--------c------cCCC
Q 012785 169 GTGSTQL----FQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKRF--------N------KDGP 230 (456)
Q Consensus 169 t~G~~~a----l~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l--------~------~~~~ 230 (456)
+.|++++ +.+++..+..+|| +|++++|+|+.|...++..|.+++.++.+.++. . ..++
T Consensus 99 ~~~~~~~~~~~l~~~~~~~~~pgd----~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (397)
T d3tata_ 99 IQTLGGSGALKVGADFLKRYFPES----GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARS 174 (397)
T ss_dssp CCBSHHHHHHHHHHHHHHHHCSSC----CCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSC
T ss_pred ecCchhHHHHHHHHHHhhhcCCCC----cceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhccccc
Confidence 7776664 6666677789999 999999999999999999999999888754432 1 1256
Q ss_pred eEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC---------CCCCCCCcEEEecCccccCCCCc
Q 012785 231 YIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS---------ITYPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~---------~~~~~~~~i~i~S~SK~~g~~G~ 293 (456)
++++++|||||||.++++ +|++++++||+||+|.+..+.+ .....+++|++.||||.++++|+
T Consensus 175 ~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~ 254 (397)
T d3tata_ 175 IVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE 254 (397)
T ss_dssp CCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTT
T ss_pred EEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCc
Confidence 789999999999999993 7899999999999999754421 12456789999999999999999
Q ss_pred eEEEEEEeCHHHHHH-------HHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 294 RIGWALVKDMEVAKK-------MTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 294 RiG~l~~~~~~~~~~-------l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
|+||++++ ...++. +......+..+++...|.++...+...... .++.++++.++++++++++.+.+
T Consensus 255 RiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~r~~l~~ 328 (397)
T d3tata_ 255 RVGGLSVM-CEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALK-----ASWLAEVEEMRTRILAMRQELVK 328 (397)
T ss_dssp CCBCCEEE-CSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccc-hhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 333322 222333456778889999888888631111 02345667778888888888888
Q ss_pred HHHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Chh
Q 012785 367 AVQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDE 442 (456)
Q Consensus 367 ~L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e 442 (456)
.|.... .+.+..+++|| |+|++++ .+++.++++++||.+.||. |||++. +++
T Consensus 329 ~L~~~~~~~~~~~~~~~~G~-------------F~~~~ls--~e~~~~L~~e~~V~l~~g~---------Ri~~a~~~~~ 384 (397)
T d3tata_ 329 VLSTEMPERNFDYLLNQRGM-------------FSYTGLS--AAQVDRLREEFGVYLIASG---------RMCVAGLNTA 384 (397)
T ss_dssp TTTTTCTTSCTTHHHHCCSS-------------BCCCCCC--HHHHHHHTTTTCEECCSSS---------CCBTTSCCTT
T ss_pred HHHHhCCCCceEEEcCCCce-------------EEecCcC--HHHHHHHHHhCCEEeCCCC---------EEEeccCCHH
Confidence 887652 25556677777 9999884 5678888899999999974 999977 889
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
+++.+.++|++++
T Consensus 385 ~i~~~~~ai~~v~ 397 (397)
T d3tata_ 385 NVQRVAKAFAAVM 397 (397)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=4.3e-38 Score=315.34 Aligned_cols=322 Identities=14% Similarity=0.085 Sum_probs=233.2
Q ss_pred CCCeEEecCC---CCCCCch--hHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCce--
Q 012785 93 GERIINVDHG---DPTMYEK--YWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHH-- 165 (456)
Q Consensus 93 ~~~~i~l~~g---~p~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~-- 165 (456)
.+++|||++| +++..++ +.++++.. .+.........|.+..| .++||+++++++...+......++
T Consensus 29 ~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~--~~~~~~~~~~~Y~p~~G-----~p~lreaia~~~~~~~~~~~~~~~~~ 101 (412)
T d1ajsa_ 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQ--RIANNSSLNHEYLPILG-----LAEFRTCASRLALGDDSPALQEKRVG 101 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHH--HHHTCTTCCCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCCcEEeeCCCCcCCCCCCCCcHHHHHHHH--HHHhCCCcCCCCCCCCC-----CHHHHHHHHHHHhccCCcccccccce
Confidence 4567999999 5554332 33443211 12222222246999999 599999999998543222112333
Q ss_pred EEEccCHHHHHHHHHHHh-------cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec---------cCccccc---
Q 012785 166 IVVGTGSTQLFQAALYAL-------SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA---------GDAKRFN--- 226 (456)
Q Consensus 166 I~~t~G~~~al~~~~~~l-------~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~---------~d~~~l~--- 226 (456)
++.|.|.+.++..+..++ .++|| +|++++|+|+.|...++..|++.+.+. .|.+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd----~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~ 177 (412)
T d1ajsa_ 102 GVQSLGGTGALRIGAEFLARWYNGTNNKDT----PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDL 177 (412)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHSSSSSCCCS----CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHH
T ss_pred eecccchhhHHHHHHHHHHHHhhhcCCCCC----EEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHH
Confidence 445666666665555443 68999 999999999999999999998865432 2222221
Q ss_pred ---cCCCeEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCCC----------CCCCCCcEEEecCc
Q 012785 227 ---KDGPYIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTSI----------TYPADHDLMLFTVS 285 (456)
Q Consensus 227 ---~~~~~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~~----------~~~~~~~i~i~S~S 285 (456)
..+++++++++||||||.++++ +|++++++||+||+|.+..+.+. ....++++++.|+|
T Consensus 178 ~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 257 (412)
T d1ajsa_ 178 ENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFS 257 (412)
T ss_dssp HHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECT
T ss_pred HhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccc
Confidence 2367899999999999999993 79999999999999997544321 13457899999999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHH-------HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHH
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKM-------TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMS 358 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l-------~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (456)
|.++++|+|+||++++ ....+.+ .........+++.+.|.++..++...... .++.++++.++++++
T Consensus 258 k~~~~~G~R~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~ 331 (412)
T d1ajsa_ 258 KNFGLYNERVGNLTVV-AKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELF-----HEWTGNVKTMADRIL 331 (412)
T ss_dssp TTSCCGGGCEEEEEEE-CSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHH-----HHHHHHHHHHHHHHH
T ss_pred ccccCCCCCccccccc-hhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHH
Confidence 9999999999999998 4333332 22333356778889999988887631111 023567888999999
Q ss_pred HHHHHHHHHHHhcCC---ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEE
Q 012785 359 TRWKQLRMAVQKSGL---FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRI 435 (456)
Q Consensus 359 ~~~~~l~~~L~~~~~---~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRi 435 (456)
++|+.+.+.|++++. +.+..+++|| |.|+++ +.+++.++++++||.+.||. ||
T Consensus 332 ~~r~~l~~~L~~~~~~~~~~~i~~~~G~-------------F~~~~l--s~~~v~~L~~e~gV~~vpg~---------Ri 387 (412)
T d1ajsa_ 332 SMRSELRARLEALKTPGTWNHITDQIGM-------------FSFTGL--NPKQVEYLINQKHIYLLPSG---------RI 387 (412)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHCCSS-------------EEECCC--CHHHHHHHHHTTCEECCTTS---------EE
T ss_pred HHHHHHHHHHHHhCCCCCeeeecCCCeE-------------EEecCC--CHHHHHHHHHhCCEEEeCCC---------eE
Confidence 999999999998742 4455667777 999877 46778888899999999974 99
Q ss_pred EecC-ChhHHHHHHHHHHhhh
Q 012785 436 SMLD-RDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~~-~~e~i~~~l~~L~~~l 455 (456)
+++. ++++++.++++|++++
T Consensus 388 ~~ag~~~~~i~~~a~aI~~av 408 (412)
T d1ajsa_ 388 NMCGLTTKNLDYVATSIHEAV 408 (412)
T ss_dssp EGGGCCTTTHHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHHHHHH
Confidence 9986 8899999999999876
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-37 Score=308.83 Aligned_cols=320 Identities=14% Similarity=0.110 Sum_probs=233.9
Q ss_pred CCeEEecCC---CCCCCc--hhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCce--E
Q 012785 94 ERIINVDHG---DPTMYE--KYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHH--I 166 (456)
Q Consensus 94 ~~~i~l~~g---~p~~~~--~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~--I 166 (456)
++.|||+.| +|+..+ ++.+.++.. .....+. ...|++..| .++||+++++|+...+.....++. +
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~-~~~~~~~--~~~Y~p~~G-----~~~lR~aia~~~~~~~~~~~~~~~~~~ 97 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQ-YLLENET--TKNYLGIDG-----IPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHH-HHHHHCC--CCCCCCTTC-----CHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHH-HHhhCCC--CCCCCCCcC-----CHHHHHHHHHHHHhhcCCcccccceee
Confidence 456999999 555433 344443321 1122222 235999999 599999999998654433222333 4
Q ss_pred EEccCHHHHHHHHHHH--hcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCccc--------cc------cCCC
Q 012785 167 VVGTGSTQLFQAALYA--LSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAKR--------FN------KDGP 230 (456)
Q Consensus 167 ~~t~G~~~al~~~~~~--l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~--------l~------~~~~ 230 (456)
++|.|+..++.+++.. +..+|| .|++++|+|+.|...++.+|++++.++.+.+. +. ..++
T Consensus 98 ~~~~~~~~~~~l~~~~l~~~~~gd----~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (396)
T d2q7wa1 98 AQTPGGTGALRVAADFLAKNTSVK----RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGD 173 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHSCCC----EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTC
T ss_pred eccchHHHHHHHHHHHHhhcccce----EEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhccCc
Confidence 4677777676655544 468999 99999999999999999999999887764332 11 1256
Q ss_pred eEEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC---------CCCCCCCcEEEecCccccCCCCc
Q 012785 231 YIELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS---------ITYPADHDLMLFTVSKSTGHAGT 293 (456)
Q Consensus 231 ~~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~---------~~~~~~~~i~i~S~SK~~g~~G~ 293 (456)
++++++|||||||.++++ +|++++++||+||+|.+..+.+ .....++.+++.|+||.++++|+
T Consensus 174 ~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~ 253 (396)
T d2q7wa1 174 VVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNE 253 (396)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGG
T ss_pred EEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCC
Confidence 889999999999999993 7999999999999999754421 11245788999999999999999
Q ss_pred eEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 294 RIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 294 RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
|+||++++ +..++.+.... .....+++...|.++..++..-... ..++++++.++++++++|+.+.+
T Consensus 254 R~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~r~~l~~ 327 (396)
T d2q7wa1 254 RVGACTLV-AADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALR-----AIWEQELTDMRQRIQRMRQLFVN 327 (396)
T ss_dssp CCEEEEEE-CSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHH-----HHHHHHHHHC-CHHHHHHHHHHH
T ss_pred Cccccccc-hhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 44444443332 2345677888888888777521100 01367888999999999999999
Q ss_pred HHHhcCC---ccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-Chh
Q 012785 367 AVQKSGL---FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDE 442 (456)
Q Consensus 367 ~L~~~~~---~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e 442 (456)
.|++++. +.+..++||+ |.|++++ .+++.++++++||.+.||+ |||++. +++
T Consensus 328 ~L~~~~~~~~~~~~~~~~G~-------------F~~~~l~--~e~~~~L~~e~gV~~~~g~---------Ri~~a~l~~~ 383 (396)
T d2q7wa1 328 TLQEKGANRDFSFIIKQNGM-------------FSFSGLT--KEQVLRLREEFGVYAVASG---------RVNVAGMTPD 383 (396)
T ss_dssp HHHHTTCCSCCTHHHHCCSS-------------EEECCCC--HHHHHHHHHHHCEECCTTC---------EEEGGGCCTT
T ss_pred HHHHhCCCCCcceecCCCeE-------------EEeeCCC--HHHHHHHHHhCCEEECCCC---------EEEecCCCHH
Confidence 9998742 4555666777 9999884 5678888899999999965 999987 889
Q ss_pred HHHHHHHHHHhhh
Q 012785 443 NYNLFVQRLSKIL 455 (456)
Q Consensus 443 ~i~~~l~~L~~~l 455 (456)
+++.++++|++++
T Consensus 384 ~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 384 NMAPLCEAIVAVL 396 (396)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.5e-35 Score=294.88 Aligned_cols=321 Identities=16% Similarity=0.115 Sum_probs=233.3
Q ss_pred CCCCeEEecCC---CCCCCc--hhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceE
Q 012785 92 GGERIINVDHG---DPTMYE--KYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHI 166 (456)
Q Consensus 92 ~~~~~i~l~~g---~p~~~~--~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I 166 (456)
..+..|||++| +++..+ ++.+.++.. ..+.... ...|++..| .++||+++++++...+......+.+
T Consensus 24 ~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~-~~~~~~~--~~~Y~p~~G-----~~~lr~aia~~~~~~~~~~~~~~~~ 95 (394)
T d2ay1a_ 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQ-RMLETET--TKTYAGLSG-----EPEFQKAMGELILGDGLKSETTATL 95 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHH-HHHHHCC--CCCCCCSSC-----CHHHHHHHHHHHHGGGCCGGGEEEE
T ss_pred CCCCCEEccCCCccCCCCCCCCCHHHHHHHH-HHhhCCC--CCCCCCCCC-----CHHHHHHHHHHHhccccccccccce
Confidence 33467999999 344332 233443221 1122222 136999999 5999999999996655544433344
Q ss_pred EEccC-HHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccCcc--------ccc------cCCCe
Q 012785 167 VVGTG-STQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGDAK--------RFN------KDGPY 231 (456)
Q Consensus 167 ~~t~G-~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~--------~l~------~~~~~ 231 (456)
+++.| +..++.+.+..+..+|| .|++++|+|+.|...++.+|.+++.++.+.+ .+. ..+++
T Consensus 96 ~~~~~~~~~~l~~~~~~~~~~gd----~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (394)
T d2ay1a_ 96 ATVGGTGALRQALELARMANPDL----RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDM 171 (394)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTC----CEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCE
T ss_pred eccCchHHHHHHHHHhhhcCCce----EEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhcccCcE
Confidence 33333 34446666677789999 9999999999999999999999988775322 111 12467
Q ss_pred EEEEcCCCCCCcccchH--------HhhhcCcEEEeeecCCCCCCCC-----C----CCCCCCcEEEecCccccCCCCce
Q 012785 232 IELVTSPNNPDGSVRQS--------VVNRSGGILVHDLAYYWPQYTS-----I----TYPADHDLMLFTVSKSTGHAGTR 294 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~~--------l~~~~~~~iI~De~y~~~~~~~-----~----~~~~~~~i~i~S~SK~~g~~G~R 294 (456)
++++++||||||.++++ +|++++++||+||+|.+..+.+ . .....+.+++.|+||.++++|+|
T Consensus 172 i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R 251 (394)
T d2ay1a_ 172 VLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRER 251 (394)
T ss_dssp EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGC
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCccc
Confidence 88899999999999993 7899999999999999755432 1 12345789999999999999999
Q ss_pred EEEEEEeCHHHHHHHHH-------HHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 295 IGWALVKDMEVAKKMTK-------YIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 295 iG~l~~~~~~~~~~l~~-------~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+||++++ ....+...+ .......+.+...|.++...+....-. .+++++++.++++++++|+.+.+.
T Consensus 252 ~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~r~~l~~~ 325 (394)
T d2ay1a_ 252 TGCLLAL-CADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELR-----ADWMAELEAVRSGMLRLREQLAGE 325 (394)
T ss_dssp EEEEEEE-CSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhc-hhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 433333322 223345677888888887777621100 123577888999999999999999
Q ss_pred HHhcC---CccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC-ChhH
Q 012785 368 VQKSG---LFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-RDEN 443 (456)
Q Consensus 368 L~~~~---~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-~~e~ 443 (456)
|++++ .+.+..++||| |+|+++ +.+++.+++.++||.+.||. |||++. ++++
T Consensus 326 L~~~~~~~~~~~~~~~~G~-------------F~~~~l--s~~~~~~L~~~~~V~~~~g~---------Ri~~a~l~~~~ 381 (394)
T d2ay1a_ 326 LRDLSGSDRFGFVAEHRGM-------------FSRLGA--TPEQVKRIKEEFGIYMVGDS---------RINIAGLNDNT 381 (394)
T ss_dssp HHHHHTSSTTTHHHHCCSS-------------EEECCC--CHHHHHHHHHHHCEECCTTC---------EEEGGGCCTTT
T ss_pred HHHhCCCCceeeECCCcee-------------EEecCc--CHHHHHHHHHhCCEEecCCC---------EEEecCCCHHH
Confidence 98863 35666788888 999988 46678888899999999964 999986 8899
Q ss_pred HHHHHHHHHhh
Q 012785 444 YNLFVQRLSKI 454 (456)
Q Consensus 444 i~~~l~~L~~~ 454 (456)
++.+.++|.++
T Consensus 382 i~~l~~ai~~v 392 (394)
T d2ay1a_ 382 IPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=1.5e-26 Score=227.08 Aligned_cols=291 Identities=14% Similarity=0.042 Sum_probs=196.4
Q ss_pred CCeEEecCCCCCCCchhHhhhcccccccccCccccccccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHH
Q 012785 94 ERIINVDHGDPTMYEKYWQKVGDKTTIVIPGWQSLSYFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGST 173 (456)
Q Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~ 173 (456)
+.++|+....+.++.++.... .... ++.+..+ .+++++..+++++. .+.+++++|+|++
T Consensus 20 ~~i~~~~gl~~~~~~~~~~~~------~~~~-----~~~~~~~-----~~~l~~~~~~~~~~-----~~~e~~~~~~~~~ 78 (366)
T d2aeua1 20 DALYDLSGLSGGFLIDEKDKA------LLNT-----YIGSSYF-----AEKVNEYGLKHLGG-----DENDKCVGFNRTS 78 (366)
T ss_dssp GGCEECSSCCCCCCCCHHHHH------HHTS-----TTHHHHH-----HHHHHHHHHHHHTC-----CTTEEEEEESSHH
T ss_pred chHhhhccCCCCCCccHHHHH------HHHH-----hcCchhh-----HHHHHHHHHHHccC-----CCccEEEEeCCHH
Confidence 457888665555554432221 1111 2333334 47888888887753 1457899999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEe-CCCCCChhhhhhhcCCeEeeeccCcccccc---CCCeEEEEcCCCCCCcccch--
Q 012785 174 QLFQAALYALSSQDASEPISVVSA-APYYSSYPSITDCVKSRLYKWAGDAKRFNK---DGPYIELVTSPNNPDGSVRQ-- 247 (456)
Q Consensus 174 ~al~~~~~~l~~~gd~~~~~Vlv~-~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-- 247 (456)
+++..++.+|.++++ .|+++ .|+|+.+...++..|++++... |.+.++. .++++|++++|+||++....
T Consensus 79 ~a~~~~l~al~~~~~----vi~~~~~~~~~~~~~~~~l~g~~~v~~~-d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l 153 (366)
T d2aeua1 79 SAILATILALKPKKV----IHYLPELPGHPSIERSCKIVNAKYFESD-KVGEILNKIDKDTLVIITGSTMDLKVIELENF 153 (366)
T ss_dssp HHHHHHHHHHCCSEE----EEECSSSSCCTHHHHHHHHTTCEEEEES-CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHH
T ss_pred HHHHHHHHHhCCCCE----EEEecCCCcchhHHHHHHhcCCeEECCC-CHHHHHHhcCCCceEEEEEecCCCCcCCHHHH
Confidence 999999999865544 34444 6899999999999999987765 6777754 37899999999998765433
Q ss_pred ----HHhhhcCcEEEeeecCCCC----CCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc
Q 012785 248 ----SVVNRSGGILVHDLAYYWP----QYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG 319 (456)
Q Consensus 248 ----~l~~~~~~~iI~De~y~~~----~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~ 319 (456)
++|+++|+++|+||+|... ...+.....+.+++++|+||.+ +|+|+||++++ ++++++++........+
T Consensus 154 ~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~--~g~~~G~i~~~-~~~i~~~~~~~~~~g~~ 230 (366)
T d2aeua1 154 KKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIEGTKFGLE 230 (366)
T ss_dssp HHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHHHHTTTCB
T ss_pred HHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccccc--cccceeEEEec-HHHHHHHHHHHhccccc
Confidence 3789999999999999731 1111111224569999999965 68999999997 99999999988877888
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH-------HHHHHHHHhcCCcc--ccCCCCccccccccc
Q 012785 320 VSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW-------KQLRMAVQKSGLFS--VPELPSQFCTFLGRA 390 (456)
Q Consensus 320 ~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~l~~~L~~~~~~~--~~~~~g~~~~~~~~~ 390 (456)
.+++.|.++.+.|+.+. +.++++..+..+ +.+........... ...+.+.+
T Consensus 231 ~~~~~~~a~~~aL~tl~-------------~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 290 (366)
T d2aeua1 231 AQPPLLAGIYRALKNFN-------------LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG------- 290 (366)
T ss_dssp CCHHHHHHHHHHHHHCC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSE-------
T ss_pred CCHHHHHHHHHHHHhcc-------------HHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccc-------
Confidence 99999999998887421 112222222222 22222222221111 11112222
Q ss_pred CCCCCceEEeecCc--------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC
Q 012785 391 FEPQPAFAWLKCEQ--------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD 439 (456)
Q Consensus 391 ~~~~~~f~~~~~~~--------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~ 439 (456)
|+|.+... +.+.+..+++++||.+.||..|+.+++++|||++.
T Consensus 291 ------~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~ 341 (366)
T d2aeua1 291 ------FVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTS 341 (366)
T ss_dssp ------EEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTS
T ss_pred ------hhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccc
Confidence 56665432 23566778889999999999997678899999975
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.87 E-value=5.9e-21 Score=187.72 Aligned_cols=277 Identities=12% Similarity=0.075 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhh----hhhhcCCeEee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPS----ITDCVKSRLYK 217 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~----~~~~~g~~~~~ 217 (456)
.++|+.+|++++. ++++|++|+|+++++++++.++ .++|| +|+++++.|+.... ..+..|+++..
T Consensus 53 ~~~r~~la~~~~~------~~~~i~~~~g~t~a~~~~~~~l~~~~g~----~i~~~~~~~~s~~~~~~~~~~~~g~~~~~ 122 (381)
T d1elua_ 53 AQLRQALAETFNV------DPNTITITDNVTTGCDIVLWGLDWHQGD----EILLTDCEHPGIIAIVQAIAARFGITYRF 122 (381)
T ss_dssp HHHHHHHHHHTTS------CGGGEEEESSHHHHHHHHHHHSCCCTTC----EEEEETTCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHhCC------CcccEEEECChHHHhhhcchhhhhcCCc----eEEEeccccceeeeccccccccccccccc
Confidence 4577778888764 4678999999999999999998 57888 99999999986443 44556888877
Q ss_pred eccCcc--------cccc---CCCeEEEEcCCCCCCcccch-----HHhhh----cCcEEEeeecCCCCCCCCCCCCCCC
Q 012785 218 WAGDAK--------RFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNR----SGGILVHDLAYYWPQYTSITYPADH 277 (456)
Q Consensus 218 ~~~d~~--------~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~----~~~~iI~De~y~~~~~~~~~~~~~~ 277 (456)
++.+.. .++. .++++++++++|||||.+++ ++|++ +++++++|.++.-..........+-
T Consensus 123 v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~ 202 (381)
T d1elua_ 123 FPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEV 202 (381)
T ss_dssp ECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCC
T ss_pred cccccccccchHHHHHHhhhcccccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccccccccc
Confidence 664321 1222 36789999999999999988 37776 5789999998874322222234467
Q ss_pred cEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH----------------------hhccCcCChHHHHHHHHHHHhh
Q 012785 278 DLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI----------------------ELNTIGVSKDSQLRAAKVLKVV 335 (456)
Q Consensus 278 ~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~----------------------~~~~~~~s~~~q~~a~~~L~~~ 335 (456)
++++.|+.|.++ ....+|++.+. ++..+++.... .......+.....++.++++.+
T Consensus 203 D~~~~s~~K~~~-~p~G~g~l~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~ 280 (381)
T d1elua_ 203 DYYAFTGHKWFA-GPAGVGGLYIH-GDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLH 280 (381)
T ss_dssp SEEEEESSSTTC-CCTTCEEEEEC-TTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-ccchhhHHHhh-HHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhH
Confidence 899999999987 33567888886 65555432110 0111234444444444555432
Q ss_pred hCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHH
Q 012785 336 SDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFL 413 (456)
Q Consensus 336 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l 413 (456)
.. ....+...++.+++++++.+.|++++++++..+.. +.+.++.+.+++ ..+.+.+.|
T Consensus 281 ~~---------~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------~~~~~vsf~~~~~~~~~~i~~~L 340 (381)
T d1elua_ 281 QR---------QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSA-----------PQAGLVSFTVDSPLGHRAIVQKL 340 (381)
T ss_dssp HH---------HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSC-----------CSSSEEEEEECSSSCHHHHHHHH
T ss_pred HH---------hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCC-----------ccccEEEEEcCCCCCHHHHHHHH
Confidence 21 11234455677788889999999987666543321 122345555543 457788999
Q ss_pred HhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 414 KGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 414 ~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+++||.++. ++ .++++|+|+.. ++||++.+++.|+++.
T Consensus 341 ~~~gi~v~~---~~-~~~~lRis~~~~nt~edid~ll~~l~e~~ 380 (381)
T d1elua_ 341 EEQRIYLRT---IA-DPDCIRACCHYITDEEEINHLLARLADFG 380 (381)
T ss_dssp HHTTEECEE---ET-TTTEEEEECCTTCCHHHHHHHHHHHTTCC
T ss_pred HhCCcEEEe---cC-CCCEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 999999875 22 37899999864 8899999999999863
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.84 E-value=1.8e-20 Score=182.74 Aligned_cols=271 Identities=16% Similarity=0.129 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC-
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD- 221 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d- 221 (456)
..+++.+|++++. +++++|+|+++|+.+++.+++++|| +|+++.|+|......++..|++++.++.+
T Consensus 50 ~~~~~~~A~~~g~--------e~~~~t~g~t~a~~~~~~al~~~gd----~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~ 117 (364)
T d2e7ja1 50 DFIHNQLPKFLGC--------DVARVTNGAREAKFAVMHSLAKKDA----WVVMDENCHYSSYVAAERAGLNIALVPKTD 117 (364)
T ss_dssp HHHHTHHHHHTTS--------SEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHHHHHhCc--------CEEEEECcHHHHHHHHHHHHhCCCc----EEEeecccccccchHHHhccceEEEeeecc
Confidence 5678888988863 5899999999999999999999999 99999999988888889999998877653
Q ss_pred -------cccccc--------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEE
Q 012785 222 -------AKRFNK--------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLML 281 (456)
Q Consensus 222 -------~~~l~~--------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i 281 (456)
.+.++. .++++|++++|+||||.+.+ ++|+++|+++|+|++|.......-....+.++++
T Consensus 118 ~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~ 197 (364)
T d2e7ja1 118 YPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIV 197 (364)
T ss_dssp TTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEE
T ss_pred ccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceee
Confidence 233321 13468889999999999977 4899999999999999743322111122457999
Q ss_pred ecCccccCCCCceEEEEEEeCHHHHHHHHHHHh--------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 282 FTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE--------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 282 ~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~--------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
+|++|.++.+| ++||++++ +++.+.+..... ............++.+.+... .+++++.
T Consensus 198 ~S~~K~~~~~g-~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~ 264 (364)
T d2e7ja1 198 GSGHKSMAASG-PIGVMGMK-EEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV-----------RERIKRW 264 (364)
T ss_dssp EEHHHHSSCCS-SCEEEEEC-TTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH-----------HHHGGGH
T ss_pred eccccccCCCC-CEEEEEEC-HHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHH-----------HHHHHHH
Confidence 99999999666 89999997 666554432211 001111222233333334321 2233333
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccC-CCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEEeec
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPE-LPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKILTRS 422 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~v~p 422 (456)
.+.++ +++.+.+.|++.+...+.. +.. ....+...+. ........+.+.|+....
T Consensus 265 ~~~~~-~~~~~~~~l~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (364)
T d2e7ja1 265 DEEVE-KARRFAAEMEKLGIKQLGDNPHN-------------HDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIK 330 (364)
T ss_dssp HHHHH-HHHHHHHHHHHTTCEEESSSSCC-------------SSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSC
T ss_pred HHHHH-HHHHHHHHHHHcCCeecCCCCCC-------------cceEEEeccchHHHHHHhhccchHHHHHHHhcCCceec
Confidence 44443 4456667777765322211 111 1123333221 122345566677775322
Q ss_pred CCCCCCCCCeEEEEe-cCChhHHHHHHHHHHhhhC
Q 012785 423 GKHFGFSPKYVRISM-LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 423 g~~fg~~~~~iRis~-~~~~e~i~~~l~~L~~~l~ 456 (456)
.+. ...+|++. ..++|++++++++|+++++
T Consensus 331 ---~g~-~~~~~~~~~~~t~edid~~~~~l~ei~~ 361 (364)
T d2e7ja1 331 ---PGL-TRYFKLSTYGLSDEEVDYVLNAFKEIIE 361 (364)
T ss_dssp ---TTC-CSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred ---CCC-cceEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 222 45677774 3488999999999999863
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.3e-19 Score=176.82 Aligned_cols=276 Identities=13% Similarity=0.118 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCChhhhhh---hcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSYPSITD---CVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~~~~~~---~~g~~~ 215 (456)
.++|+.+|++++. ++++|++|+|++++++.++.++ .++|| +|++.++.|+.+....+ ..|+++
T Consensus 51 ~~~R~~iA~~lg~------~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd----~Vv~~~~~~~s~~~~~~~~~~~G~~v 120 (391)
T d1p3wa_ 51 DIARNQIADLVGA------DPREIVFTSGATESDNLAIKGAANFYQKKGK----HIITSKTEHKAVLDTCRQLEREGFEV 120 (391)
T ss_dssp HHHHHHHHHHHTC------CGGGEEEESSHHHHHHHHHHHHHHHHGGGCC----EEEEETTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CCCcEEEECCHHHHHHHHHhhhhhhhcCCCC----EEEEeccccchHHHHHHHHHHcCCEE
Confidence 3678888888875 5679999999999999988875 47899 99999999998766554 358998
Q ss_pred eeeccCcc------ccc---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcEE
Q 012785 216 YKWAGDAK------RFN---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDLM 280 (456)
Q Consensus 216 ~~~~~d~~------~l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i~ 280 (456)
..++.|.+ .++ .+++++|++++|+||||.+++ ++|+++|+++++|.+|.... .++. ...+-+++
T Consensus 121 ~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~-~~~d~~~~~~D~~ 199 (391)
T d1p3wa_ 121 TYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK-LPIDLSQLKVDLM 199 (391)
T ss_dssp EEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTT-BCCCTTTSCCSEE
T ss_pred EEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCC-ccccchhcccccc
Confidence 88776543 222 247899999999999999987 37889999999999887432 2221 33456789
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHH-------hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHH
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-------ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFT 353 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-------~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~ 353 (456)
+.|..|.+|.+| +|+++++ ++....+.... .......+.....+....+.. ..+.....
T Consensus 200 ~~s~~k~~g~~g--~g~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~ 265 (391)
T d1p3wa_ 200 SFSGHKIYGPKG--IGALYVR-RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI-----------AKEEMATE 265 (391)
T ss_dssp EEESTTTTSCSS--CEEEEEC-BTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred ccccccccCCCc--eEEEEEe-cchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhH-----------HHHHhhHH
Confidence 999999998777 5887776 43332222111 011222232233333333331 12334444
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCC----
Q 012785 354 NHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGF---- 428 (456)
Q Consensus 354 ~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~---- 428 (456)
.+++++.++.+.+.|..++...+...... ..+..+.+..+. ..+.+...+ +++.++.|..+..
T Consensus 266 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~ 333 (391)
T d1p3wa_ 266 MERLRGLRNRLWNGIKDIEEVYLNGDLEH----------GAPNILNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLE 333 (391)
T ss_dssp HHHHHHHHHHHHHTTTTSTTEEECSCTTT----------SCTTEEEEEETTSCHHHHHHHT--TTEECBCCCC------C
T ss_pred HHHHHHHHHHHHHHHHhhcCeeecccccc----------cCceEEEEEeCCCChHHHHHHh--CCCEEEccccccCCccc
Confidence 56666777777777776654333211110 011122233332 444555545 5788888765521
Q ss_pred --------------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 429 --------------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 429 --------------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..++||||+.. ++||++.+++.|++++
T Consensus 334 ~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l 376 (391)
T d1p3wa_ 334 PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSI 376 (391)
T ss_dssp CCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 12579999875 8899999999999876
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.1e-17 Score=164.06 Aligned_cols=273 Identities=12% Similarity=0.101 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
+.+|++.+|+|++. +..++++.+.++...++.++..++| .|++..-.+.......+..+.+++.|+.
T Consensus 85 ~~~lE~~LA~~~g~--------e~al~~~SG~~an~~~i~al~~~~d----~v~~d~~~h~si~~g~~~~~~~~~~~~hn 152 (383)
T d1bs0a_ 85 HQALEEELAEWLGY--------SRALLFISGFAANQAVIAAMMAKED----RIAADRLSHASLLEAASLSPSQLRRFAHN 152 (383)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESCHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHTSSSEEEEECTT
T ss_pred HHHHHHHHHHhcCC--------CceEEecccchhhHHHHHhhcCCCc----eEEeeccccHHHhhccccCCCcceEecch
Confidence 48999999999973 4777888888999999999999999 9999999999999999989999888774
Q ss_pred Ccccccc------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCC----CCCC--CCCCCcEEEec
Q 012785 221 DAKRFNK------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQY----TSIT--YPADHDLMLFT 283 (456)
Q Consensus 221 d~~~l~~------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~----~~~~--~~~~~~i~i~S 283 (456)
|.+.++. .+..+|++..+.+.+|.+.+ ++|++||+++|+||++....+ .+.. ......+.+.|
T Consensus 153 d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t 232 (383)
T d1bs0a_ 153 DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVT 232 (383)
T ss_dssp CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccc
Confidence 4454432 24578888899999999877 489999999999999984211 1111 22356678899
Q ss_pred CccccCCCCceEEEEEEeCHHHHHHHHHHHhh--ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHH
Q 012785 284 VSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL--NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRW 361 (456)
Q Consensus 284 ~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~--~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (456)
|||.+|.+| |++.++ .++++.++..... .+...++....++.+.++.+. ....+..+.++.++.
T Consensus 233 ~~ka~g~~G---g~v~~~-~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~----------~~~~~~~~~~l~~~~ 298 (383)
T d1bs0a_ 233 FGKGFGVSG---AAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR----------SDEGDARREKLAALI 298 (383)
T ss_dssp SSSTTSSCC---EEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH----------SHHHHHHHHHHHHHH
T ss_pred ccccccccc---cccccc-hhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHH----------hhhhHHHHHHHHHHH
Confidence 999999887 999886 8889888766332 233444444444455554322 123456677788888
Q ss_pred HHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC---CCCCeEEEEec
Q 012785 362 KQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG---FSPKYVRISML 438 (456)
Q Consensus 362 ~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg---~~~~~iRis~~ 438 (456)
.++.+.|.+.+. .+....... ..+++.-+.....+.+.|+++||.+.+. .|. .+...+||++.
T Consensus 299 ~~~~~~l~~~g~-~~~~~~s~I------------i~v~~g~~~~a~~~~~~L~~~Gi~v~~~-~~PtVp~g~~~lRi~~~ 364 (383)
T d1bs0a_ 299 TRFRAGVQDLPF-TLADSCSAI------------QPLIVGDNSRALQLAEKLRQQGCWVTAI-RPPTVPAGTARLRLTLT 364 (383)
T ss_dssp HHHHHHHTTSSC-EECSCCSSB------------CCEEEESHHHHHHHHHHHHHTTEECCEE-CTTSSCTTCEEECCBCC
T ss_pred HHHHHHHHhcCC-ccCCCCCCE------------EEEEECCHHHHHHHHHHHHHCCceEEEE-cCCCCCCCCceEEEEeC
Confidence 899999988763 332222111 0245443334557788899999999874 343 23557999987
Q ss_pred C--ChhHHHHHHHHHHhh
Q 012785 439 D--RDENYNLFVQRLSKI 454 (456)
Q Consensus 439 ~--~~e~i~~~l~~L~~~ 454 (456)
. ++|+++++++.|+.+
T Consensus 365 a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 365 AAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 5 999999999999864
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.2e-18 Score=166.81 Aligned_cols=269 Identities=13% Similarity=0.099 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh---cCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC---VKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~---~g~~~~~~ 218 (456)
..+|++.+|++++. +++++++|+++|+.++++++..+|| .+++..+.+..+...... .+..+..+
T Consensus 36 ~~~le~~lA~~~G~--------~~~~~~~sGt~A~~~al~a~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (343)
T d1m6sa_ 36 INELERLAAETFGK--------EAALFVPSGTMGNQVSIMAHTQRGD----EVILEADSHIFWYEVGAMAVLSGVMPHPV 103 (343)
T ss_dssp HHHHHHHHHHHTTC--------SEEEEESCHHHHHHHHHHHHCCTTC----EEEEETTCHHHHSSTTHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHCC--------CeEEEeCCHHHHHHHHHHHHhccCC----ceeccccccceeeecccccccccceeecc
Confidence 48899999999863 4788889999999999999999999 999999887655543333 33444333
Q ss_pred cc-----Ccccc----cc-----CCCe-EEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCCCCCC--CC-
Q 012785 219 AG-----DAKRF----NK-----DGPY-IELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWPQYTS--IT- 272 (456)
Q Consensus 219 ~~-----d~~~l----~~-----~~~~-~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~~~~~--~~- 272 (456)
+. |.+.+ .. .++. .++.+.++||.|.+.+ ++|++++++++.|++|.+..... ..
T Consensus 104 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~ 183 (343)
T d1m6sa_ 104 PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPV 183 (343)
T ss_dssp CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCH
T ss_pred ccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccch
Confidence 22 22221 11 1223 4455567888888766 26789999999999987411100 00
Q ss_pred --CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 273 --YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 273 --~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
........+ ++|..+..|.+.|+.+.. .+.+............+.+.....++......... .+.
T Consensus 184 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---------~~~- 250 (343)
T d1m6sa_ 184 KEYAGYADSVM--FCLSKGLCAPVGSVVVGD-RDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM---------VDR- 250 (343)
T ss_dssp HHHHHTCSEEE--EESSSTTCCSSCEEEEEC-HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS---------STT-
T ss_pred hhhcccccccc--cccccccccccccccccc-HHHHhhhHhhCcccccccchhHHHHHhhhhhhhhh---------HHH-
Confidence 011122333 334445566778888885 88877777776555555555554444443332111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCC
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFG 427 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg 427 (456)
.+...+++..+.+.+.+++......+. .++++|+++++ ....+.+.|+++||.++|.
T Consensus 251 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~---- 310 (343)
T d1m6sa_ 251 ---LKEDHENARFLALKLKEIGYSVNPEDV-------------KTNMVILRTDNLKVNAHGFIEALRNSGVLANAV---- 310 (343)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCBCCGGGC-------------CSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE----
T ss_pred ---HHHHHHHHHHhhhHHHHhccCccCCCC-------------CceEEEEEeCCCcccHHHHHHHHHHCCCEEecC----
Confidence 233444555555666655443333332 33488998863 4577888999999999983
Q ss_pred CCCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 428 FSPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 428 ~~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
+++++||+++. ++|++++++++|+++++
T Consensus 311 -~~~~iRi~~~~~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 311 -SDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp -ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 36789998864 89999999999999863
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=3.9e-17 Score=160.97 Aligned_cols=271 Identities=13% Similarity=0.134 Sum_probs=192.3
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc-
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG- 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~- 220 (456)
..+|++.+|++++. +.+++++++.++...++.++..++| .|++..-.+......+...+.+...++.
T Consensus 92 ~~~lE~~lA~~~g~--------e~al~~~SG~~An~~~i~~l~~~~d----~i~~d~~~h~s~~~G~~~~~a~~~~~~~~ 159 (401)
T d1fc4a_ 92 HKELEQKLAAFLGM--------EDAILYSSCFDANGGLFETLLGAED----AIISDALNHASIIDGVRLCKAKRYRYANN 159 (401)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESCHHHHHHTTHHHHCCTTC----EEEEETTCCHHHHHHHHTSCSEEEEECTT
T ss_pred HHHHHHHHHHhhcC--------CceEEecchhhhhHHHHHHhcCCCc----EEEeCCcchHHHHccccccCceEEEEcCC
Confidence 36899999999963 5788999999999999999999999 9999999999998888888888876653
Q ss_pred Ccccccc---------CCCeEEEEcCCCCCCcccc--h---HHhhhcCcEEEeeecCCCCCC----CCC----CCCCCCc
Q 012785 221 DAKRFNK---------DGPYIELVTSPNNPDGSVR--Q---SVVNRSGGILVHDLAYYWPQY----TSI----TYPADHD 278 (456)
Q Consensus 221 d~~~l~~---------~~~~~i~v~~P~NPtG~~~--~---~l~~~~~~~iI~De~y~~~~~----~~~----~~~~~~~ 278 (456)
|.+.++. ....+|++....+.+|... . ++|+++|+++|+||++....+ .+. ....+.+
T Consensus 160 d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~d 239 (401)
T d1fc4a_ 160 DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVD 239 (401)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCS
T ss_pred ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCe
Confidence 4443321 2335666666666677663 3 489999999999999984211 111 1234568
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHh--hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIE--LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~--~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
++++||||.+| |...|++.++ +++++.++.... ..+.+.++....++...++.+.. .+..+++
T Consensus 240 ii~~tl~Ka~g--g~~Gg~v~g~-~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~------------~~~~~~~ 304 (401)
T d1fc4a_ 240 IITGTLGKALG--GASGGYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA------------GSELRDR 304 (401)
T ss_dssp EEEEESSSTTC--SSSCEEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT------------CHHHHHH
T ss_pred EEEeecccccc--cCCcccccCC-HHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccccc------------CHHHHHH
Confidence 99999999984 3345888885 999988876532 23455666666666666664322 2456788
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCC---CCCC
Q 012785 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFG---FSPK 431 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg---~~~~ 431 (456)
++++.+.+++.+...+. .+....+. .+-+.+.+ ....+.+.|.++||.+.+- .|. .+..
T Consensus 305 l~~~~~~~~~~l~~~g~-~~~~~~~p--------------Iv~v~~~~~~~a~~~~~~L~~~Gi~v~~i-~~PtVp~g~~ 368 (401)
T d1fc4a_ 305 LWANARQFREQMSAAGF-TLAGADHA--------------IIPVMLGDAVVAQKFARELQKEGIYVTGF-FYPVVPKGQA 368 (401)
T ss_dssp HHHHHHHHHHHHHHTTC-CBCCSSSS--------------EEEEEEECHHHHHHHHHHHHHTTEECCEE-CTTSSCTTCE
T ss_pred HHHHHHHHHhhhcccCC-ccCCCCCC--------------EEEEEECCHHHHHHHHHHHHHCCceEEeE-CCCCCCCCCc
Confidence 88888899998888753 22222221 23333432 3446778899999998762 332 2355
Q ss_pred eEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 432 YVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 432 ~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
.+|++++. ++|+++++++.|+++.
T Consensus 369 ~lRi~~~a~hT~edId~~v~al~ev~ 394 (401)
T d1fc4a_ 369 RIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 69999875 9999999999999875
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.6e-17 Score=164.31 Aligned_cols=279 Identities=15% Similarity=0.110 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCChhhh----hhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSYPSI----TDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~ 214 (456)
.+.|+.+|++++. .++++|++|+|+|++++.++..+ ..+|| +|++.+-.|+..... ++..|++
T Consensus 69 e~~R~~ia~~l~~-----~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~----~il~~~~e~~s~~~~~~~~a~~~g~~ 139 (405)
T d1jf9a_ 69 ENVRKRASLFINA-----RSAEELVFVRGTTEGINLVANSWGNSNVRAGD----NIIISQMEHHANIVPWQMLCARVGAE 139 (405)
T ss_dssp HHHHHHHHHHTTC-----SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHcCC-----CCcccccccCcHHHHHHHHHhcccccccCCCC----EEEEEeCcccchHHHHHHHHHHcCcE
Confidence 4567777777752 13578999999999999888763 46788 999999999885544 4556999
Q ss_pred EeeeccCcccc------c---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEE
Q 012785 215 LYKWAGDAKRF------N---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLM 280 (456)
Q Consensus 215 ~~~~~~d~~~l------~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~ 280 (456)
+..++.|.++. + ..+++++.++..+|.||.+++ ++|+++|+++++|-++.-+....-....+-+++
T Consensus 140 v~~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~ 219 (405)
T d1jf9a_ 140 LRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFY 219 (405)
T ss_dssp EEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEE
T ss_pred EEEECCCCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCcee
Confidence 99888765432 1 237899999999999999988 488999999999998875322211123456899
Q ss_pred EecCccccCCCCceEEEEEEeCHHHHHHHHHHH----------------------hhccCcCChHHHHHHHHHHHhhhCC
Q 012785 281 LFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI----------------------ELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 281 i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~----------------------~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
+.|..|.+|.+| +|+++++ +++.+.+.... .......+.....++..+++.+.+
T Consensus 220 ~~s~hK~~Gp~G--~g~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~- 295 (405)
T d1jf9a_ 220 VFSGHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSA- 295 (405)
T ss_dssp EEEGGGTTSCSS--CEEEEEC-HHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH-
T ss_pred eccccccccCCC--ceeeeec-hhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHH-
Confidence 999999998777 7999996 77655432110 111234455555566666653222
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCC
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNK 417 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~g 417 (456)
.-.+...++.+...+.+.+.++..+......|.. ....+-+.++. +.+.+...|.++|
T Consensus 296 ---------~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~------------r~~ivsf~~~~~~~~~~~~~L~~~g 354 (405)
T d1jf9a_ 296 ---------LGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN------------RLGVIAFNLGKHHAYDVGSFLDNYG 354 (405)
T ss_dssp ---------HCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTT------------CCSEEEEEETTCCHHHHHHHHHHTT
T ss_pred ---------hChHHHHHHHHHHHHHHHhhhhcCCcccccCCcC------------cCcEEEEEcCCCCHHHHHHHHHHCC
Confidence 1244555556666667777777766554443321 11134455654 5677888899999
Q ss_pred EEeecCCCCC-------CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFG-------FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg-------~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|.++.|+.+. ..++.+|||+.. +++|++.+++.|++++
T Consensus 355 I~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~ 401 (405)
T d1jf9a_ 355 IAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIH 401 (405)
T ss_dssp EECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999988763 136899999875 8899999999999875
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.73 E-value=2.7e-16 Score=153.66 Aligned_cols=272 Identities=13% Similarity=0.100 Sum_probs=187.1
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh--cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL--SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA 219 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l--~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 219 (456)
+.+|++.+|+|++. +..++.+.+..+...++.+| ..++| .|+.+.-.+......++..++++..|+
T Consensus 92 h~~LE~~lA~~~g~--------e~all~~sG~~An~~~i~~l~~~~~~d----~i~~D~~~Hasi~~g~~ls~a~~~~f~ 159 (396)
T d2bwna1 92 HRRLEAEIAGLHQK--------EAALVFSSAYNANDATLSTLRVLFPGL----IIYSDSLNHASMIEGIKRNAGPKRIFR 159 (396)
T ss_dssp HHHHHHHHHHHTTC--------SEEEEESCHHHHHHHHHHHHHHHSTTC----EEEEETTCCHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHHhCC--------CceeeeecchHHHHHHHHHHhcccCCC----ceeehhhhhhccchhhhccccCceEee
Confidence 47999999999974 45666666677777788877 45778 888888888888899999999988876
Q ss_pred c-Ccccccc-------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCC----CCCCCCC----CCCCCc
Q 012785 220 G-DAKRFNK-------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYW----PQYTSIT----YPADHD 278 (456)
Q Consensus 220 ~-d~~~l~~-------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~----~~~~~~~----~~~~~~ 278 (456)
. |.+.++. .+.++|++..-.+.+|.+.+ +++++|++++++||++.- +.-.++. ...+.+
T Consensus 160 Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~d 239 (396)
T d2bwna1 160 HNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRID 239 (396)
T ss_dssp TTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCS
T ss_pred cchHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeee
Confidence 5 3333321 24467777777888898866 488999999999999983 2222221 123468
Q ss_pred EEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhcc--CcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHH
Q 012785 279 LMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNT--IGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQ 356 (456)
Q Consensus 279 i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~--~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 356 (456)
|+++||||++|..| |++.++ +++++.++....... ...++....++.+.++.+.. +..++.+..
T Consensus 240 i~~gTlsKa~g~~G---g~v~~~-~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~----------~~~~~~r~~ 305 (396)
T d2bwna1 240 IFNGTLAKAYGVFG---GYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKT----------AEGQKLRDA 305 (396)
T ss_dssp EEEEESSSTTCSCC---EEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTS----------HHHHHHHHH
T ss_pred eeeecccccccccc---cccchh-HHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhc----------chHHHHHHH
Confidence 99999999999887 998885 999999887643322 23344444444455553222 234556777
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHH-HHHHhCCEEeecCCCCC---CCC
Q 012785 357 MSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCE-SFLKGNKILTRSGKHFG---FSP 430 (456)
Q Consensus 357 ~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~-~~l~~~gI~v~pg~~fg---~~~ 430 (456)
++.+.+.+.+.|.+.+. .+...... -+-+.+.+ ....+. ++|+++||.+.+.. |. .+.
T Consensus 306 l~~~~~~~~~~l~~~g~-~~~~~~sp--------------Ivpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~-~PtVp~g~ 369 (396)
T d2bwna1 306 QQMHAKVLKMRLKALGM-PIIDHGSH--------------IVPVVIGDPVHTKAVSDMLLSDYGVYVQPIN-FPTVPRGT 369 (396)
T ss_dssp HHHHHHHHHHHHHHHTC-CBCCCSSS--------------CEEEECCCHHHHHHHHHHHHHHHCEECCEEC-TTTSCTTC
T ss_pred HHHHHHHHHHHHHhcCC-CcCCCCCC--------------EEEEEeCCHHHHHHHHHHHHHhCCEEEEEEC-CCcCCCCC
Confidence 88888888888887653 22221111 23333332 233344 45678999997633 32 245
Q ss_pred CeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 431 KYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 431 ~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
..+||+++. ++|+|+++++.|+++.
T Consensus 370 ~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 370 ERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred eeEEEEeCccCCHHHHHHHHHHHHHhC
Confidence 689999975 9999999999999863
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=1.1e-16 Score=156.43 Aligned_cols=277 Identities=13% Similarity=0.169 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh----cCCCCCCCcEEEEeCCCCCChhhhhh---hcCCeE
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL----SSQDASEPISVVSAAPYYSSYPSITD---CVKSRL 215 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l----~~~gd~~~~~Vlv~~P~y~~~~~~~~---~~g~~~ 215 (456)
.+.|+.+|++++. ++++|++++|+++++..++..+ ..+|+ .|++....|+.+....+ ..|+++
T Consensus 47 ~~aR~~ia~l~~~------~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~~~g~~v 116 (376)
T d1eg5a_ 47 EKAREKVAKVLGV------SPSEIFFTSCATESINWILKTVAETFEKRKR----TIITTPIEHKAVLETMKYLSMKGFKV 116 (376)
T ss_dssp HHHHHHHHHHHTS------CGGGEEEESCHHHHHHHHHHHHHHHTTTTCC----EEEECTTSCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CCCcEEEECCHHHHHHhhhhcccccccccCc----ccccccccchhhHHHHHHHHhcCCEE
Confidence 4567888888875 5689999999999999988643 45666 78888877777665554 449999
Q ss_pred eeeccCcc------ccc---cCCCeEEEEcCCCCCCcccch--H---Hh--hhcCcEEEeeecCCCCCCCCCCCCCCCcE
Q 012785 216 YKWAGDAK------RFN---KDGPYIELVTSPNNPDGSVRQ--S---VV--NRSGGILVHDLAYYWPQYTSITYPADHDL 279 (456)
Q Consensus 216 ~~~~~d~~------~l~---~~~~~~i~v~~P~NPtG~~~~--~---l~--~~~~~~iI~De~y~~~~~~~~~~~~~~~i 279 (456)
+.++.|.+ .++ ..++++++++.++|+||..++ + ++ ...++++++|.++.-....--....+.++
T Consensus 117 ~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~ 196 (376)
T d1eg5a_ 117 KYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDY 196 (376)
T ss_dssp EECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSE
T ss_pred EEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccc
Confidence 88776543 222 247899999999999999876 2 44 34699999999887432221123456789
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHH-------HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHH
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY-------IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEF 352 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~-------~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~ 352 (456)
+++|++|.+|.+|..++|+ . ++. .++.. ........+......+....... ......
T Consensus 197 ~~~s~~K~~gp~G~~~l~~--~-~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 260 (376)
T d1eg5a_ 197 ASFSAHKFHGPKGVGITYI--R-KGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA-----------VEELSE 260 (376)
T ss_dssp EEEEGGGGTSCTTCEEEEE--C-TTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-----------HHTHHH
T ss_pred eecccceeecCCCceeEEe--c-cCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhcc-----------ccchhh
Confidence 9999999999999777764 3 221 11111 11112223344444444444321 122334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCCCCC--
Q 012785 353 TNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHFGFS-- 429 (456)
Q Consensus 353 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~fg~~-- 429 (456)
........++.+.+.|.............. .....-..++. ..+.+...|.++||.+++|..+..+
T Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~ 329 (376)
T d1eg5a_ 261 AAKHMEKLRSKLVSGLMNLGAHIITPLEIS-----------LPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDE 329 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECSCTTSB-----------CTTEEEEECTTCCHHHHHHHHHHTTEECBC---------
T ss_pred hhhhhhhhhhhhcccccccccccccccccc-----------ccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCcc
Confidence 445555566667777766543222111110 11123334433 5678888899999999998765311
Q ss_pred ----------------CCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 430 ----------------PKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 430 ----------------~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
.++||+|+.. ++||++.+++.|+++++
T Consensus 330 ~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 330 RLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp ---CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 2469999874 89999999999999873
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=4.5e-16 Score=150.85 Aligned_cols=282 Identities=13% Similarity=0.185 Sum_probs=191.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~ 217 (456)
...|++.|+++.+ .+..+++++++.|+..++.+++++|| +|++.+..|.+....++. .|+++..
T Consensus 61 ~~~LE~~la~LEg--------~~~a~~~~SGmaAi~~~l~~l~~~Gd----~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~ 128 (392)
T d1gc0a_ 61 LNLLEARMASLEG--------GEAGLALASGMGAITSTLWTLLRPGD----EVLLGNTLYGCTFAFLHHGIGEFGVKLRH 128 (392)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhC--------CcceeehhhHHHHHHHHHHhhccCCC----eeecccccchhhhhhhhhhhccCCccccc
Confidence 3678888888874 35778889999999999999999999 999999999987766544 5888776
Q ss_pred ecc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCccc
Q 012785 218 WAG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 218 ~~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~ 287 (456)
++. |.+.+++ .++++|++.+|.|||..+.+ ++|+++|+++|+|..|.-| ...|+ ..+-+|++.|.+|.
T Consensus 129 ~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl--~~GaDivihS~TKy 206 (392)
T d1gc0a_ 129 VDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL--ELGADLVVHSATKY 206 (392)
T ss_dssp ECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTT
T ss_pred CCccCHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccChH--HhCCCEEEEeccee
Confidence 654 5566653 47899999999999999977 4899999999999998743 23344 34567999999999
Q ss_pred c-CCCCceEEEEEEeCHHHHHHHH--HHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 T-GHAGTRIGWALVKDMEVAKKMT--KYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~-g~~G~RiG~l~~~~~~~~~~l~--~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
+ |+..+-.|.++++ ++.+++++ ..+.......++...+.+...|+. +.-..++..++...+
T Consensus 207 i~Ghsd~~~G~v~~~-~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T---------------L~lRm~~~~~nA~~l 270 (392)
T d1gc0a_ 207 LSGHGDITAGIVVGS-QALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT---------------LNLRMDRHCANAQVL 270 (392)
T ss_dssp TTCSSSCCCEEEEEC-HHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHH
T ss_pred ecCCcccccccccch-hHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc---------------HHHHHHHHHHHHHHH
Confidence 9 4666777888775 77766553 445556788899988888887772 445566777888889
Q ss_pred HHHHHhcCCccccCCCCc----ccccccccCCCCCceEEeecCccHHHHHHHHHhCCE---EeecCCC------------
Q 012785 365 RMAVQKSGLFSVPELPSQ----FCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI---LTRSGKH------------ 425 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI---~v~pg~~------------ 425 (456)
.+.|++++.++....+|. .....++.....+..+.+.++.+.+...+.+..-.+ .+.-|..
T Consensus 271 A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th 350 (392)
T d1gc0a_ 271 AEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTH 350 (392)
T ss_dssp HHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTT
T ss_pred HHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcChhhcCcccccc
Confidence 999999875543222111 011112222233444566776554444454444333 2222221
Q ss_pred ----------CCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 426 ----------FGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 ----------fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.|..++.||||++. |+.+.+++.|.+.|
T Consensus 351 ~~~~~e~r~~~Gi~~~liRlSVGl--Ed~eDLi~Dl~~AL 388 (392)
T d1gc0a_ 351 SSYTPEERAHYGISEGLVRLSVGL--EDIDDLLADVQQAL 388 (392)
T ss_dssp SSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHcCCCcCeEEEEeee--CCHHHHHHHHHHHH
Confidence 12245789999964 44455555555544
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=7.6e-16 Score=148.97 Aligned_cols=247 Identities=16% Similarity=0.166 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~ 218 (456)
..|++.++++.+ .+..+++++++.|+..++.+++++|| +|++.+..|.+....+.. .|.+...+
T Consensus 53 ~~le~~la~LEg--------g~~a~~~sSGMaAi~~~l~~l~~~gd----~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~ 120 (384)
T d1cs1a_ 53 DVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLKPGD----LLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 120 (384)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHHHHHTTTSCEEEEE
T ss_pred HHHHHHHHHHhC--------CCceEEecChHHHHHHHHhhcccccc----eecccccccchhhhhhhhhhcccccccccc
Confidence 678888888774 35788899999999999999999999 999999999877554443 46665544
Q ss_pred c-cCcccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCcccc
Q 012785 219 A-GDAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~-~d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
. .|.+.++. .++++|++.+|.|||..+.+ ++|+++|+++|+|..+.-| ...|+ ..+-+|++.|.||.+
T Consensus 121 d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl--~~GaDiVvhS~TKyi 198 (384)
T d1cs1a_ 121 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL--ALGADLVLHSCTKYL 198 (384)
T ss_dssp CTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG--GGTCSEEEEETTTTT
T ss_pred cCCCHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccccccc--ccCCCEEEEcccccc
Confidence 3 35555543 57899999999999999977 4889999999999998754 22333 345679999999999
Q ss_pred -CCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 -GHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 -g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
|+..+=.|.++.+++.+.+.+...+.......++...+.+..-|+. +.-..++..++...+.+.
T Consensus 199 ~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T---------------L~lRm~~~~~nA~~lA~~ 263 (384)
T d1cs1a_ 199 NGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT---------------LVPRMELAQRNAQAIVKY 263 (384)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch---------------hHHHHHHHHHHHHHHHHh
Confidence 5555667878887788888888887777888999988888887762 444566677888899999
Q ss_pred HHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCE
Q 012785 368 VQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418 (456)
Q Consensus 368 L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI 418 (456)
|+.++.+.....+|.- .....+.....+..+.+.++.+.+.+.+.+.+-.+
T Consensus 264 L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l 318 (384)
T d1cs1a_ 264 LQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSL 318 (384)
T ss_dssp HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSS
T ss_pred cccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCc
Confidence 9988765433222211 00111122223445666776666666666655443
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.72 E-value=6.8e-16 Score=152.62 Aligned_cols=282 Identities=15% Similarity=0.161 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHH----hcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYA----LSSQDASEPISVVSAAPYYSSYPSI----TDCVKSR 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~----l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~ 214 (456)
.+.|+.++++++. .+++.|++++++++++++++.. -.++|+ +|++.+-.|+..... .+..|.+
T Consensus 69 e~aR~~ia~llga-----~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~----~il~s~~e~~s~~~~~~~~~~~~g~~ 139 (408)
T d1t3ia_ 69 EAVRNKVAKFINA-----RSPREIVYTRNATEAINLVAYSWGMNNLKAGD----EIITTVMEHHSNLVPWQMVAAKTGAV 139 (408)
T ss_dssp HHHHHHHHHHTTC-----SCGGGEEEESSHHHHHHHHHHHTHHHHCCTTC----EEEEETTCCGGGTHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHhCC-----CCcccEEeecchHHHHHHHHhhccccccCCCC----EEEeecccchhhhhhhhhhhhccCce
Confidence 3567777777753 1357899999999999998876 356788 999999888865543 3446888
Q ss_pred EeeeccCcc------ccc---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC-CCCCCcE
Q 012785 215 LYKWAGDAK------RFN---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT-YPADHDL 279 (456)
Q Consensus 215 ~~~~~~d~~------~l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~-~~~~~~i 279 (456)
+..++.+.+ .++ ..++++|.++.-+|-||..++ ++|+++|+++++|-++.-. ..++. ...+-++
T Consensus 140 v~~~~~~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g-~~~id~~~~~~D~ 218 (408)
T d1t3ia_ 140 LKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP-HYPLDVQLIDCDW 218 (408)
T ss_dssp EEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTT-TSCCCHHHHTCSE
T ss_pred EeeeeccccccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecc-cccccccccCCce
Confidence 877765432 222 247899999999999999988 3789999999999988743 22221 2335689
Q ss_pred EEecCccccCCCCceEEEEEEeCHHHHHHHHHHH---------------------hhccCcCChHHHHHHHHHHHhhhCC
Q 012785 280 MLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI---------------------ELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 280 ~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~---------------------~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
++.|..|.+|.+| +|+++++ ++....+.... .+.....+.....++...++.+.+
T Consensus 219 ~~~s~hK~~gp~G--~g~l~v~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~- 294 (408)
T d1t3ia_ 219 LVASGHKMCAPTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTD- 294 (408)
T ss_dssp EEEEGGGTTSCTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH-
T ss_pred EEeccccccCCCC--ccccccc-hhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHH-
Confidence 9999999887666 7999997 77665432111 111233455555555666653322
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCC
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNK 417 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~g 417 (456)
--.++++++..+..+++.+.+.+.+...+..+.... ...+..+-+.++. +.+.+...|.++|
T Consensus 295 ---------~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~iv~f~~~~~~~~~v~~~L~~~g 357 (408)
T d1t3ia_ 295 ---------LGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH--------GDRAALASFNVAGLHASDVATMVDQDG 357 (408)
T ss_dssp ---------HCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG--------SCBCSEEEEEETTBCHHHHHHHHHTTT
T ss_pred ---------cCHHHHHHHHHHHHhHHhhhhccCccccccCCCccc--------cCcceEEEEEeCCCCHHHHHHHHhhCC
Confidence 234566677777778888888887655544332111 1122234455554 5677888899999
Q ss_pred EEeecCCCCC-------CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFG-------FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg-------~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|.++.|..|. ..++.+|||+.. +++|++.+++.|++++
T Consensus 358 I~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~ 404 (408)
T d1t3ia_ 358 IAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATI 404 (408)
T ss_dssp EECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999988763 136789999875 8999999999999876
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.72 E-value=1e-15 Score=148.43 Aligned_cols=281 Identities=13% Similarity=0.154 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhh----hhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSIT----DCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~ 218 (456)
..|++.++.+.+ .+..+++++++.|+..++.+++++|| +|++++..|.+....+ ...|+++..+
T Consensus 66 ~~LE~~la~LEg--------g~~a~~~sSGmaAi~~~l~~ll~~Gd----~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~v 133 (397)
T d1y4ia1 66 DALEKKLAVLER--------GEAGLATASGISAITTTLLTLCQQGD----HIVSASAIYGCTHAFLSHSMPKFGINVRFV 133 (397)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEESSSCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhC--------CccceeehHHHHHHHHHHhhccCCCC----eeeeecccccccchhhhcccCCCceEeecc
Confidence 567777777764 35677888899999999999999999 9999999998866554 4568888776
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.+++ .++++|++.+|.||+..+.+ ++++++|+++|+|..|..| ...|+ ..+-+|++.|++|.+
T Consensus 134 d~~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl--~~GaDivihS~TKyi 211 (397)
T d1y4ia1 134 DAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL--QLGADIVVHSVTKYI 211 (397)
T ss_dssp CTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG--GGTCSEEEEETTTTT
T ss_pred CCCCHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcch--hcCCCEEEEehhhhc
Confidence 64 4555543 47899999999999999977 4889999999999998854 23344 334579999999999
Q ss_pred C-CCCceEEEEEEeCHHHHHHH--HHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 289 G-HAGTRIGWALVKDMEVAKKM--TKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 289 g-~~G~RiG~l~~~~~~~~~~l--~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
+ +..+=.|.++++ ++.+.+. ...+.......++...+.+...|+. +.-..++..++...+.
T Consensus 212 ~Ghsdvl~G~v~~~-~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T---------------L~lRm~~~~~nA~~lA 275 (397)
T d1y4ia1 212 NGHGDVIGGIIVGK-QEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT---------------LGIRMERHCENALKIA 275 (397)
T ss_dssp TCSSCCCCEEEEEC-HHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHH
T ss_pred CCCcceeeeccCCC-HHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc---------------HHHHHHHHHHHHHHHH
Confidence 5 444555666664 7766654 3445555777889988888887773 4445666778888999
Q ss_pred HHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCEEe---ecCCC-------------
Q 012785 366 MAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILT---RSGKH------------- 425 (456)
Q Consensus 366 ~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v---~pg~~------------- 425 (456)
+.|+.++.++....+|.- ....++.....+..+.+.++++.+...+.+.+-.+.. .-|..
T Consensus 276 ~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~ 355 (397)
T d1y4ia1 276 RFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHS 355 (397)
T ss_dssp HHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTS
T ss_pred HHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCccccccc
Confidence 999998765433222210 0000111122233455667655555555555544322 11211
Q ss_pred ---------CCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 426 ---------FGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 ---------fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.|..++.||||++. |+.+.+++.|++.|
T Consensus 356 ~~~~e~r~~~Gi~~~liRlsvGl--Ed~~DLi~Dl~~AL 392 (397)
T d1y4ia1 356 PVAPEERLKAGITDGLIRLSVGL--EDPEDIINDLEHAI 392 (397)
T ss_dssp SSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred cCCHHHHHHcCCCcCEEEEEecc--CCHHHHHHHHHHHH
Confidence 11235789999964 33444555555544
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.72 E-value=1.9e-15 Score=146.71 Aligned_cols=281 Identities=12% Similarity=0.143 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh----hcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD----CVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~~~~ 218 (456)
..|++.||++.+ .+..++++.++.|+..++.+++++|| +|++....|.+....++ ..|.+...+
T Consensus 70 ~~LE~~la~LEg--------g~~a~~~sSGMaAi~~~l~~l~~~Gd----~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 137 (398)
T d1qgna_ 70 VVLEEKISALEG--------AESTLLMASGMCASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETILPKMGITATVI 137 (398)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHSCSSC----EEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred HHHHHHHHHHhC--------CceEEEecCcchHHHHHHhhcccccc----cccccccccchhhhhhcccccccccccccc
Confidence 578888888764 35788899999999999999999999 99999999988765544 457776655
Q ss_pred cc-Ccccc----ccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCccc
Q 012785 219 AG-DAKRF----NKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 219 ~~-d~~~l----~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~ 287 (456)
.. |.+.. ...++++|++.+|.|||..+.+ ++|+++|+++|+|..+.-| .+.|+ ..+-+|++.|.+|.
T Consensus 138 ~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl--~~GaDiVihS~TKy 215 (398)
T d1qgna_ 138 DPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKAL--ALGADLVLHSATKF 215 (398)
T ss_dssp CSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTT--TTTCSEEEECTTTT
T ss_pred cccchhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCch--hhCCCEEEEechhh
Confidence 52 32222 2357899999999999999977 4889999999999998754 22334 34567999999999
Q ss_pred cCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 012785 288 TGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRM 366 (456)
Q Consensus 288 ~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 366 (456)
++-.| +=.|.++. ++++.+.++..........++.....+...|+. +.-..++..++...+.+
T Consensus 216 ~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T---------------L~lRm~~~~~nA~~lA~ 279 (398)
T d1qgna_ 216 LGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT---------------LHLRVQQQNSTALRMAE 279 (398)
T ss_dssp TTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG---------------HHHHHHHHHHHHHHHHH
T ss_pred cCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH---------------HHHHHHHHHHHHHHHHH
Confidence 95444 44555555 599999999988878888999998888887773 44556677788889999
Q ss_pred HHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCEE---eecCCC--------------
Q 012785 367 AVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKIL---TRSGKH-------------- 425 (456)
Q Consensus 367 ~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~---v~pg~~-------------- 425 (456)
.|++++.+.....+|.- ....++.....+..+.+.++.+.+.+.+.+.+-.+. +.-|..
T Consensus 280 ~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~ 359 (398)
T d1qgna_ 280 ILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWD 359 (398)
T ss_dssp HHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTT
T ss_pred HHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcchhcccc
Confidence 99998765432222210 011111122223345556665555555555544332 111211
Q ss_pred --------CCCCCCeEEEEecCChhHHHHHHHHHHhhh
Q 012785 426 --------FGFSPKYVRISMLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 426 --------fg~~~~~iRis~~~~~e~i~~~l~~L~~~l 455 (456)
.|..++.||||++. |+.+.+++.|++.|
T Consensus 360 ~~~~~~~~~Gi~~~liRlSvGl--Ed~eDLi~Dl~~AL 395 (398)
T d1qgna_ 360 LSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQAL 395 (398)
T ss_dssp SCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHH
Confidence 12235789999964 33344555555544
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.71 E-value=1.4e-15 Score=146.96 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~ 218 (456)
..|++.||.+-+ .+..+++++++.|+.. +..++++|| +|++..+.|.+....++. .|.++..+
T Consensus 52 ~~le~~la~LE~--------~~~a~~fsSGMaAisa-ll~ll~~Gd----~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 118 (380)
T d1ibja_ 52 DALESLLAKLDK--------ADRAFCFTSGMAALSA-VTHLIKNGE----EIVAGDDVYGGSDRLLSQVVPRSGVVVKRV 118 (380)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHH-HHTTSCTTC----EEEEESSCCHHHHHHHHHTSGGGTCEEEEE
T ss_pred HHHHHHHHHHcC--------CceEEehhhHHHHHHH-HHHhhCCCC----EEEEEecccccccchhhhhhcccccccccc
Confidence 577777777764 3466777777899975 557889999 999999999887766554 47776655
Q ss_pred cc-Cccccc---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcccc
Q 012785 219 AG-DAKRFN---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 219 ~~-d~~~l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~~ 288 (456)
+. |.+.++ ..++++|++.+|.||+..+.+ ++|+++|+++|+|+.+..|- ..|+ ..+-+|++.|++|.+
T Consensus 119 d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl--~~GaDiVvhS~TKyi 196 (380)
T d1ibja_ 119 NTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL--ELGADIVMHSATKFI 196 (380)
T ss_dssp CTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG--GTTCSEEEEETTTTT
T ss_pred CcchHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccccccc--ccCCCEEEeccccee
Confidence 53 344444 347899999999999999977 48899999999999997542 3444 345679999999999
Q ss_pred C-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012785 289 G-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMA 367 (456)
Q Consensus 289 g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 367 (456)
+ +..+=.|.++.+++.+.+.++..+.......++.....+...|+. +.-..++..++...+.+.
T Consensus 197 ~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T---------------l~lRm~~~~~nA~~lA~~ 261 (380)
T d1ibja_ 197 AGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT---------------MALRIEKQQENARKIAMY 261 (380)
T ss_dssp TCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHH
T ss_pred ccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh---------------hhhhHHHHHHHHHHHHHH
Confidence 5 444566777777678888888888877888999988888887772 445566777888889999
Q ss_pred HHhcCCcccc
Q 012785 368 VQKSGLFSVP 377 (456)
Q Consensus 368 L~~~~~~~~~ 377 (456)
|++++.++..
T Consensus 262 L~~hp~V~~V 271 (380)
T d1ibja_ 262 LSSHPRVKKV 271 (380)
T ss_dssp HHTCTTCCEE
T ss_pred HHhCCCeeEE
Confidence 9998765543
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=8.7e-17 Score=159.78 Aligned_cols=260 Identities=13% Similarity=0.068 Sum_probs=175.5
Q ss_pred ceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCeE--------------e--eeccCcc---
Q 012785 164 HHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSRL--------------Y--KWAGDAK--- 223 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~--------------~--~~~~d~~--- 223 (456)
+.+++++++++|.+.+++.... .+.. +|+...-+|++....+....... . .++....
T Consensus 102 ~~v~f~~sGseA~e~Alk~ar~~t~r~---~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (425)
T d1sffa_ 102 KKTLLVTTGSEAVENAVKIARAATKRS---GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGIS 178 (425)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTCC---EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBC
T ss_pred ceeeeeccccchhhhHHHHhhhhhccc---ceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCcccccccc
Confidence 5799999999999999987643 2221 89999999999887665542111 0 1110000
Q ss_pred ---------cc---c--cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC-----CC
Q 012785 224 ---------RF---N--KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY-----PA 275 (456)
Q Consensus 224 ---------~l---~--~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~-----~~ 275 (456)
.+ . ..+..++++..-+.-.|...+ ++|+++|+++|.||++.+...++... .-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv 258 (425)
T d1sffa_ 179 EDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV 258 (425)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS
T ss_pred chhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCC
Confidence 00 0 113456666443544566544 38999999999999999754443221 11
Q ss_pred CCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 276 DHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 276 ~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
..+ +.+++|.+| .|+.+|.++++ +++++.+.......|++.++++..++.+.|+.+.+. +.+++..+
T Consensus 259 ~PD--i~~~gK~l~-gG~P~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~---------~~~~~~~~ 325 (425)
T d1sffa_ 259 APD--LTTFAKSIA-GGFPLAGVTGR-AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQE---------NLLQKAND 325 (425)
T ss_dssp CCS--EEEECGGGG-TSSCCEEEEEE-HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHT---------THHHHHHH
T ss_pred Ccc--ceecccccC-CCcceEEEEEc-HHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHh---------hhhhhhhh
Confidence 223 445999998 89999999997 888888777766789999999999999999987653 44555555
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----------cHHHHHHHHHhCCEEeecCCC
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----------EIEDCESFLKGNKILTRSGKH 425 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~~l~~~gI~v~pg~~ 425 (456)
.-+..++.+.+.+++.+.+...+..|.+ ..+.+.. ....+.+.+.++||++.++.
T Consensus 326 ~g~~l~~~l~~~~~~~~~v~~vrg~Gl~--------------~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g- 390 (425)
T d1sffa_ 326 LGQKLKDGLLAIAEKHPEIGDVRGLGAM--------------IAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG- 390 (425)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEETTE--------------EEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEES-
T ss_pred hhhhhhhhhhhhHhhCCceEEEEccccE--------------EEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccC-
Confidence 5555556666666666654444445554 3333310 13456778889999998853
Q ss_pred CCCCCCeEEEEec--CChhHHHHHHHHHHhhhC
Q 012785 426 FGFSPKYVRISML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 426 fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l~ 456 (456)
...+.+|++.+ .+++++++++++|+++++
T Consensus 391 --~~~n~i~~~PpL~it~~eid~~l~~l~~al~ 421 (425)
T d1sffa_ 391 --PYYNVLRILVPLTIEDAQIRQGLEIISQCFD 421 (425)
T ss_dssp --TTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 23567898843 499999999999998763
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.5e-16 Score=155.16 Aligned_cols=269 Identities=12% Similarity=0.061 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC------CCCCCCcEEEEeCCCCCChhhhhhhcCCe--
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS------QDASEPISVVSAAPYYSSYPSITDCVKSR-- 214 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~------~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~-- 214 (456)
.++.+.+++.. ..+.++++++++++.+.+++.... .......+|+...-+|++...........
T Consensus 86 ~~~~~~~~~~~--------~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~ 157 (404)
T d2byla1 86 GEYEEYITKLF--------NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPT 157 (404)
T ss_dssp HHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHH
T ss_pred HHHHHhhhhcc--------cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcc
Confidence 34555555544 246899999999999999987632 00011117888888888766554443221
Q ss_pred -----------Eeeecc-Cccccc----cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCC
Q 012785 215 -----------LYKWAG-DAKRFN----KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYT 269 (456)
Q Consensus 215 -----------~~~~~~-d~~~l~----~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~ 269 (456)
+..++. |.+.++ ..+..++++..-+.-.|...+ ++|+++|+++|.||++.+...+
T Consensus 158 ~~~~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~ 237 (404)
T d2byla1 158 SYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART 237 (404)
T ss_dssp HHTTSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cccCCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccc
Confidence 111221 444433 235556666433555665544 3899999999999999875444
Q ss_pred CCCC-----CCCCcEEEecCccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCC
Q 012785 270 SITY-----PADHDLMLFTVSKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSG 343 (456)
Q Consensus 270 ~~~~-----~~~~~i~i~S~SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~ 343 (456)
+... .-..+|+ +|+|.++ .| +.+|.++++ +++.+.+.......|++.++++..++.+.|+.+.+.
T Consensus 238 G~~~a~~~~gv~PDi~--~~gK~l~-gG~~p~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~----- 308 (404)
T d2byla1 238 GRWLAVDYENVRPDIV--LLGKALS-GGLYPVSAVLCD-DDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEE----- 308 (404)
T ss_dssp SSSSGGGGGTCCCSEE--EECGGGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHT-----
T ss_pred cccchhhhcCCCCCEE--EECchhh-CCCccceeeeec-hhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhc-----
Confidence 3221 1123444 7999999 66 899999996 998888877777789999999999999999976543
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhcC--CccccCCCCcccccccccCCCCCceEEeecC----ccHHHHHHHHHhCC
Q 012785 344 SEDECFFEFTNHQMSTRWKQLRMAVQKSG--LFSVPELPSQFCTFLGRAFEPQPAFAWLKCE----QEIEDCESFLKGNK 417 (456)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~~~l~~~g 417 (456)
...++.++..+.+.+.|.++. .+.-.+..|.+ .-+.+. .....+...+.++|
T Consensus 309 --------~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~--------------~~i~~~~~~~~~~~~~~~~l~~~G 366 (404)
T d2byla1 309 --------NLAENADKLGIILRNELMKLPSDVVTAVRGKGLL--------------NAIVIKETKDWDAWKVCLRLRDNG 366 (404)
T ss_dssp --------THHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTE--------------EEEEECCCSSCCHHHHHHHHHHTT
T ss_pred --------CchhhhhHhhHHHHHHHHhhccccceeeeecccE--------------EEEEEecCCchhHHHHHHHHHhCC
Confidence 234445555666777777653 12222233333 333332 13556777888999
Q ss_pred EEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 418 ILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
|++.|. ..+.+|++ +..+++++++++++|++.|
T Consensus 367 vl~~~~-----~~~~i~l~PpL~it~~~id~~~~~l~~al 401 (404)
T d2byla1 367 LLAKPT-----HGDIIRFAPPLVIKEDELRESIEIINKTI 401 (404)
T ss_dssp EECEEE-----ETTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEecC-----CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 999872 25688988 3359999999999999876
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=1.5e-16 Score=155.92 Aligned_cols=270 Identities=14% Similarity=0.122 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCe-------
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSR------- 214 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~------- 214 (456)
+.+..+++.+...... ..+++.+++++++|++.+++.... ... +|+...-+|++....+......
T Consensus 79 ~~~~~la~~l~~~~~~--~~~~v~f~~sGseA~e~Aik~Ar~~t~r~----~ii~~~~~yHG~t~~~~~~s~~~~~~~~~ 152 (387)
T d1vefa1 79 PMRGEFYRTLTAILPP--ELNRVFPVNSGTEANEAALKFARAHTGRK----KFVAAMRGFSGRTMGSLSVTWEPKYREPF 152 (387)
T ss_dssp HHHHHHHHHHHHTSCT--TEEEEEEESSHHHHHHHHHHHHHHHHSCC----EEEEETTCCCCSSHHHHHTCCCHHHHGGG
T ss_pred chHHHHHHHhhhhccc--cceeeccccCchHHHHHHHHHHHhhcccc----eecccccCCCCCccceEeccCCccccCCC
Confidence 4555566555332111 235799999999999999987633 223 8999999999987666554321
Q ss_pred ------Eeeecc-Ccccccc---CCCeEEEEcCC-CCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCC
Q 012785 215 ------LYKWAG-DAKRFNK---DGPYIELVTSP-NNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYP 274 (456)
Q Consensus 215 ------~~~~~~-d~~~l~~---~~~~~i~v~~P-~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~ 274 (456)
+..++. |.+.++. ++..++++ .| +.-.|...+ ++|+++|+++|.||++.+...++....
T Consensus 153 ~p~~~~~~~~p~~d~~~l~~~~~~~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~ 231 (387)
T d1vefa1 153 LPLVEPVEFIPYNDVEALKRAVDEETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 231 (387)
T ss_dssp CSCSSCEEEECTTCHHHHHHHCCTTEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred CCCCCCceEeCCCCHHHHHHhcCCCeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcc
Confidence 112222 4454443 35566666 55 444566543 389999999999999997655543211
Q ss_pred -----CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhH
Q 012785 275 -----ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECF 349 (456)
Q Consensus 275 -----~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~ 349 (456)
-..+|++ ++|.++ .|+.++.++.. +++++.+.......|++.++++..++.+.|+.+.+.
T Consensus 232 ~~~~~v~PDi~~--~gK~l~-gG~~~~~~~~~-~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~----------- 296 (387)
T d1vefa1 232 FEHFGIVPDILT--LAKALG-GGVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERT----------- 296 (387)
T ss_dssp HHHHTCCCSEEE--ECGGGG-TTSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred cccCCcCCceee--ecccCC-CCccccccccc-eeeeeccccCCccccCCCCcchhhhcccchhhcccc-----------
Confidence 1234544 899998 89999999997 888877766666788999999999999999976442
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--ccccCCCCcccccccccCCCCCceEEeecCc-cHHHHHHHHHhCCEEeecCCCC
Q 012785 350 FEFTNHQMSTRWKQLRMAVQKSGL--FSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-EIEDCESFLKGNKILTRSGKHF 426 (456)
Q Consensus 350 l~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~~~gI~v~pg~~f 426 (456)
...++++++-+.+.+.|+++.. +.-.+..|. +.-+.+++ ....+.+.+.++|+.+.+.
T Consensus 297 --~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~Gl--------------~~~ie~~~~~~~~~~~~~~~~g~l~~~~--- 357 (387)
T d1vefa1 297 --RLWERAAELGPWFMEKLRAIPSPKIREVRGMGL--------------MVGLELKEKAAPYIARLEKEHRVLALQA--- 357 (387)
T ss_dssp --TTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETT--------------EEEEEESSCSHHHHHHHHHHHCEECEES---
T ss_pred --cccchHhhhhHHHHHHHHhcCCCceEEEeecce--------------EEEEEEeCCchHHHHHHHHHCCCeEEec---
Confidence 2344555666677777776532 221222333 34556643 4566778888899988762
Q ss_pred CCCCCeEEEEe--cCChhHHHHHHHHHHhhhC
Q 012785 427 GFSPKYVRISM--LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 427 g~~~~~iRis~--~~~~e~i~~~l~~L~~~l~ 456 (456)
+++.+|++- ..+++++++++++|+++|+
T Consensus 358 --g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 358 --GPTVIRFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp --STTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred --CCCEEEEECCccCCHHHHHHHHHHHHHHhC
Confidence 367888884 3499999999999999885
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=4.5e-14 Score=136.94 Aligned_cols=206 Identities=12% Similarity=0.092 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh----hcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD----CVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~~~~ 218 (456)
..|++.++++-+ .+..+++++++.|+..++.+++++|| +|++....|.+....++ ..|.++..+
T Consensus 61 ~~le~~la~LEg--------~~~a~~~~SGMaAi~~~l~~l~~~Gd----~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~ 128 (391)
T d1cl1a_ 61 FSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFIEQGD----HVLMTNTAYEPSQDFCSKILSKLGVTTSWF 128 (391)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred HHHHHHHHHHhC--------CccEEEeccccceeeehhhcccCCCC----eEEEecccccchhhhhhhcccccccccccc
Confidence 567777777664 35788999999999999999999999 99999999998666554 457777666
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch-----HHhhh--cCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCcc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNR--SGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~--~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK 286 (456)
+. |.+.++. .++++|++.+|.||+..+.+ +++++ +|+++|+|+.+..|- ..|+ ..+-+|++.|.+|
T Consensus 129 d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl--~~GaDivvhS~TK 206 (391)
T d1cl1a_ 129 DPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL--DFGIDVSIQAATK 206 (391)
T ss_dssp CTTCGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG--GGTCSEEEEETTT
T ss_pred cCccccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhccc--ccccceEEeecch
Confidence 53 5566654 36799999999999999876 24544 599999999997542 2344 3455899999999
Q ss_pred ccC-CCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 287 STG-HAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 287 ~~g-~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
.++ +..+=.|.++. ++++.+.+...........++...+.+..-|+. +.-..++..++...+.
T Consensus 207 y~~GhsdvlgG~vv~-~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T---------------L~lR~~~~~~nA~~vA 270 (391)
T d1cl1a_ 207 YLVGHSDAMIGTAVC-NARCWEQLRENAYLMGQMVDADTAYITSRGLRT---------------LGVRLRQHHESSLKVA 270 (391)
T ss_dssp TTTCSSSCCCEEEEE-CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHH
T ss_pred hccccccccccceec-cccccccchhhhhcccccCCchhhhhhhccchh---------------HHHHHHHHHHHHHHHH
Confidence 995 44455566666 478888888887777888899888888777762 4445666778888999
Q ss_pred HHHHhcCCccccC
Q 012785 366 MAVQKSGLFSVPE 378 (456)
Q Consensus 366 ~~L~~~~~~~~~~ 378 (456)
+.|++++.+....
T Consensus 271 ~~L~~hp~V~~V~ 283 (391)
T d1cl1a_ 271 EWLAEHPQVARVN 283 (391)
T ss_dssp HHHHTCTTEEEEE
T ss_pred HHHHhcccccccc
Confidence 9999987655443
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=2e-14 Score=140.30 Aligned_cols=282 Identities=13% Similarity=0.074 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh----hcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD----CVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~~~~ 218 (456)
..|++.|+.+.+ .+..+++++++.|+..++.+++++|| +|++.+..|.+....++ ..|++...+
T Consensus 61 ~~LE~~la~LE~--------~~~a~~~~SGmaAi~~~~~~l~~~gd----~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 128 (421)
T d2ctza1 61 DVLEKRLAALEG--------GKAALATASGHAAQFLALTTLAQAGD----NIVSTPNLYGGTFNQFKVTLKRLGIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEECSCCCHHHHHHHHTHHHHTTCEEEEC
T ss_pred HHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHhhccccc----ceeecCCcCCchhHHHHHHHhhccccceec
Confidence 577777777764 35777888888999999999999999 99999999987666554 468877766
Q ss_pred ccC-c-ccc---ccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCC-CC-CCCCCCCCCCCcEEEecCcc
Q 012785 219 AGD-A-KRF---NKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYY-WP-QYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 219 ~~d-~-~~l---~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~-~~-~~~~~~~~~~~~i~i~S~SK 286 (456)
..+ . +.. ...++++|++.+|.|||..+.+ ++|+++|+++|+|+.+. .| ...|+ ..+-+|++.|.+|
T Consensus 129 d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl--~~GaDiVvhS~TK 206 (421)
T d2ctza1 129 SREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL--AWGAALVTHSLTK 206 (421)
T ss_dssp CTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG--GGTCSEEEEETTT
T ss_pred ccccCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceecccc--ccCCcEEEEechh
Confidence 542 2 222 2357899999999999999977 48899999999999986 33 23344 4456799999999
Q ss_pred ccCCCCc-eEEEEEEeCH------------------------------HHHHHH-HHHHhhccCcCChHHHHHHHHHHHh
Q 012785 287 STGHAGT-RIGWALVKDM------------------------------EVAKKM-TKYIELNTIGVSKDSQLRAAKVLKV 334 (456)
Q Consensus 287 ~~g~~G~-RiG~l~~~~~------------------------------~~~~~l-~~~~~~~~~~~s~~~q~~a~~~L~~ 334 (456)
.++-.|- =.|.++..+. .++.+. ...........++.....+...|+.
T Consensus 207 yl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~T 286 (421)
T d2ctza1 207 WVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMET 286 (421)
T ss_dssp TTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred hccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcc
Confidence 9964444 4455554311 111111 1222335677899998888887773
Q ss_pred hhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccc-----cccccCCCCCceEEeecCccHHHH
Q 012785 335 VSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCT-----FLGRAFEPQPAFAWLKCEQEIEDC 409 (456)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~f~~~~~~~~~~~~ 409 (456)
+.-..++..++...+.+.|++++.++....+|.-.+ ..+......|..+.+.++++.+..
T Consensus 287 ---------------L~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a 351 (421)
T d2ctza1 287 ---------------LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAA 351 (421)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHH
T ss_pred ---------------hhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHH
Confidence 444566677888889999999876543322221100 001112223556677776555555
Q ss_pred HHHHHhCCEEeecCCCCC--------------------------CCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 410 ESFLKGNKILTRSGKHFG--------------------------FSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 410 ~~~l~~~gI~v~pg~~fg--------------------------~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
.+.+..-.+. ..+..+| ..++.||||++. |+.+.+++.|.+.|+
T Consensus 352 ~~f~~~L~l~-~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvGl--Ed~eDLi~DL~qALa 421 (421)
T d2ctza1 352 KRFISRLKLI-SHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--EHVEDLKAELKEALA 421 (421)
T ss_dssp HHHHHTCSSS-EECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHTC
T ss_pred HHHHHcCCcC-eeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHhcC
Confidence 5555544432 2222221 135789999853 455667888887764
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.64 E-value=6.5e-16 Score=145.90 Aligned_cols=272 Identities=10% Similarity=0.025 Sum_probs=157.7
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD 209 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~ 209 (456)
.|++..+ ..++|+.||++++. ++++|++|+|+++++..++..+..+++ ++++..+.+..+.....
T Consensus 30 ~y~~~~~-----~~~lr~~ia~~~g~------~~~~v~~tsggtean~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~ 94 (340)
T d1svva_ 30 GYGQDSH-----CAKAARLIGELLER------PDADVHFISGGTQTNLIACSLALRPWE----AVIATQLGHISTHETGA 94 (340)
T ss_dssp STTCSHH-----HHHHHHHHHHHHTC------TTSEEEEESCHHHHHHHHHHHHCCTTE----EEEEETTSHHHHSSTTH
T ss_pred CCCCCHH-----HHHHHHHHHHHhCC------CcceEEEcCCHHHHHHHHHHHHhhhcc----ccccccccceeeeeccc
Confidence 4555444 37899999999975 567999999999999999999999999 88888887766544333
Q ss_pred hc--CCeEeeeccC-----ccc-c-----cc----CCCeEEEEcCCCCCCcccchH-------HhhhcCcEEEeeecCCC
Q 012785 210 CV--KSRLYKWAGD-----AKR-F-----NK----DGPYIELVTSPNNPDGSVRQS-------VVNRSGGILVHDLAYYW 265 (456)
Q Consensus 210 ~~--g~~~~~~~~d-----~~~-l-----~~----~~~~~i~v~~P~NPtG~~~~~-------l~~~~~~~iI~De~y~~ 265 (456)
.. +......... .+. . .. .+..++++++++|+.+....+ .|.+++.+++.|++|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~ 174 (340)
T d1svva_ 95 IEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLA 174 (340)
T ss_dssp HHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHH
T ss_pred ccccceeeeecccccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeecccee
Confidence 33 2222221111 000 0 00 123455555666665555442 57789999999999973
Q ss_pred CC----CCCCC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCc--CChHHHHHHHHHHHhhh
Q 012785 266 PQ----YTSIT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIG--VSKDSQLRAAKVLKVVS 336 (456)
Q Consensus 266 ~~----~~~~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~--~s~~~q~~a~~~L~~~~ 336 (456)
.. ..... ......+...+..|.. .+.+.++.... ................. .......++...++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~--- 248 (340)
T d1svva_ 175 SALSSPVNDLTLADIARLTDMFYIGATKAG--GMFGEALIILN-DALKPNARHLIKQRGALMAKGWLLGIQFEVLMK--- 248 (340)
T ss_dssp HHHTSTTCCCCHHHHHHHCSEEEEECTTTT--CSSCEEEEECS-GGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS---
T ss_pred eeecccccccccccccccceeeecCCcccc--ccccccccccc-hhhhhhhhhhcccccCccchhhHHHHHHHHHhh---
Confidence 11 11110 0112345555555544 44445555553 44433333332222222 22222222222222
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhC
Q 012785 337 DSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGN 416 (456)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 416 (456)
........+....+++.+.+.|+..+ +.+..| +.++++++.+++ + ....+.++
T Consensus 249 ----------~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~p-------------~~~~~v~~~~~~--~-~~~~l~~~ 301 (340)
T d1svva_ 249 ----------DNLFFELGAHSNKMAAILKAGLEACG-IRLAWP-------------SASNQLFPILEN--T-MIAELNND 301 (340)
T ss_dssp ----------TTHHHHHHHHHHHHHHHHHHHHHHTT-CCBSSC-------------CSSSEECBEEEH--H-HHHHHTTT
T ss_pred ----------hhHHHHHHHHHHHHHhhhHHHHhcCC-CeeecC-------------CCceEEEEeCCH--H-HHHHHHHh
Confidence 22334456677788888888888865 444333 334578887753 2 22333333
Q ss_pred ----CEEeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhh
Q 012785 417 ----KILTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKI 454 (456)
Q Consensus 417 ----gI~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~ 454 (456)
++.+.+ .+++++|++++ .++|+|++++++|+++
T Consensus 302 ~~~~~~~~~~-----~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 302 FDMYTVEPLK-----DGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp EECEEEEEET-----TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred hhhhcccccC-----CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 333333 24789999875 3899999999999975
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.64 E-value=9.1e-16 Score=151.26 Aligned_cols=262 Identities=12% Similarity=0.068 Sum_probs=167.6
Q ss_pred CceEEEccCHHHHHHHHHHHhcCC------CCCCCcEEEEeCCCCCChhhhhhhcCCeE-------------eeeccC-c
Q 012785 163 NHHIVVGTGSTQLFQAALYALSSQ------DASEPISVVSAAPYYSSYPSITDCVKSRL-------------YKWAGD-A 222 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~~------gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~-------------~~~~~d-~ 222 (456)
.+.+.++++++++...+++..... +.....+++...-+|++............ ..++.| .
T Consensus 96 ~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (404)
T d1z7da1 96 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDL 175 (404)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCH
T ss_pred cceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchH
Confidence 467889999999999988765311 11111268888888887665544432111 112221 2
Q ss_pred cccc----cCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCC-----CCCCcEEEecC
Q 012785 223 KRFN----KDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITY-----PADHDLMLFTV 284 (456)
Q Consensus 223 ~~l~----~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~-----~~~~~i~i~S~ 284 (456)
+.++ ..+..++++..-+...|...+ ++|+++|+++|.||++.+...++... .-..+|+ ++
T Consensus 176 ~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDiv--t~ 253 (404)
T d1z7da1 176 EALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LL 253 (404)
T ss_dssp HHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EE
T ss_pred HHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEE--EE
Confidence 2222 234566666443555676654 38999999999999998754443321 1123444 79
Q ss_pred ccccCCCC-ceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 012785 285 SKSTGHAG-TRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQ 363 (456)
Q Consensus 285 SK~~g~~G-~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 363 (456)
+|.++ .| ..+|.++++ +++.+.+.......|++.++++..++.+.|+.+.+. +..+...+.-+...+.
T Consensus 254 gK~l~-gG~~p~~~v~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~---------~~~~~~~~~~~~~~~~ 322 (404)
T d1z7da1 254 GKALS-GGHYPISAVLAN-DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINE---------KLCENAEKLGGPFLEN 322 (404)
T ss_dssp CGGGG-TTSSCCEEEEEC-HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHT---------THHHHHHHHHHHHHHH
T ss_pred ccccc-CCCCCcccccch-HHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcc---------hhhhhhccchhHHHHH
Confidence 99998 55 899999996 999888877767788999999999999999865543 4455555555555566
Q ss_pred HHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ec
Q 012785 364 LRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS--ML 438 (456)
Q Consensus 364 l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~ 438 (456)
+.+.+++.+.+.-.+..|.+ ..+.+.. ....+...+.++||.+.|. +.+.||+. +.
T Consensus 323 l~~~~~~~~~v~~vrg~Gl~--------------~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~-----~~~~ir~~Ppl~ 383 (404)
T d1z7da1 323 LKRELKDSKIVRDVRGKGLL--------------CAIEFKNELVNVLDICLKLKENGLITRDV-----HDKTIRLTPPLC 383 (404)
T ss_dssp HHHHHTTCTTEEEEEEETTE--------------EEEEECTTTCCHHHHHHHHHHTTEECCEE-----TTTEEEECCCTT
T ss_pred HHHHHhcCCCeEEEEeeCcE--------------EEEEEcCCcccHHHHHHHHHhCCeEEecC-----CCCEEEEECCcC
Confidence 66667666654444444544 4455532 3456778888999998763 36778887 44
Q ss_pred CChhHHHHHHHHHHhhhC
Q 012785 439 DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 439 ~~~e~i~~~l~~L~~~l~ 456 (456)
.+++++++++++|++.++
T Consensus 384 it~~~id~~~~~l~~alk 401 (404)
T d1z7da1 384 ITKEQLDECTEIIVKTVK 401 (404)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 599999999999998863
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=5e-15 Score=146.80 Aligned_cols=257 Identities=10% Similarity=0.056 Sum_probs=169.1
Q ss_pred CceEEEccCHHHHHHHHHHHhcC----CCCCCCcEEEEeCCCCCChhhhhhhcCCe--------------Eeeec-----
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS----QDASEPISVVSAAPYYSSYPSITDCVKSR--------------LYKWA----- 219 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~----~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~--------------~~~~~----- 219 (456)
.+.+.+++++++|++.+++.... .|... .+|+...-+|++....+...... ....+
T Consensus 103 ~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~-~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
T d1s0aa_ 103 LECVFLADSGSVAVEVAMKMALQYWQAKGEAR-QRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR 181 (429)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHTCCC-CEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSB
T ss_pred cceeeeccccccchhhhhhhhhheeecccccc-cEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccc
Confidence 46899999999999999886642 11111 18999999999877555443211 00000
Q ss_pred ----cCcccc---c------cCCCeEEEEcCC-CCCCcccc-h--------HHhhhcCcEEEeeecCCCCCCCCCCCC--
Q 012785 220 ----GDAKRF---N------KDGPYIELVTSP-NNPDGSVR-Q--------SVVNRSGGILVHDLAYYWPQYTSITYP-- 274 (456)
Q Consensus 220 ----~d~~~l---~------~~~~~~i~v~~P-~NPtG~~~-~--------~l~~~~~~~iI~De~y~~~~~~~~~~~-- 274 (456)
.|.+.+ + ..+..++++... ++-.|... + ++|+++|+++|.||++.+.+.++....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~ 261 (429)
T d1s0aa_ 182 MDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACE 261 (429)
T ss_dssp C-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred cccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccc
Confidence 111111 1 124556666432 35445543 3 389999999999999997655443211
Q ss_pred ---CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH-----hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcc
Q 012785 275 ---ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI-----ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSED 346 (456)
Q Consensus 275 ---~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~-----~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~ 346 (456)
-..+|+ +++|.++-.+..+|.+++. +++.+.+.... ...|++.++++..++.+.|+.+.+.
T Consensus 262 ~~~v~PDi~--~~gK~l~gG~~p~~av~~~-~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~-------- 330 (429)
T d1s0aa_ 262 HAEIAPDIL--CLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG-------- 330 (429)
T ss_dssp GGTCCCSEE--EECGGGGTSSSCCEEEEEC-HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC--------
T ss_pred cceeccccc--ccccccccccccccchhhH-HHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccc--------
Confidence 123444 4899997455899999996 99988876532 3468999999999999999977553
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc---CCccccCCCCcccccccccCCCCCceEEeec--CccHHHHHHHHHhCCEEee
Q 012785 347 ECFFEFTNHQMSTRWKQLRMAVQKS---GLFSVPELPSQFCTFLGRAFEPQPAFAWLKC--EQEIEDCESFLKGNKILTR 421 (456)
Q Consensus 347 ~~~l~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~~~l~~~gI~v~ 421 (456)
...++.++.-+.+.+.|+++ +.+.-.+..|. +.-+++ +.....+...+.++||.++
T Consensus 331 -----~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl--------------~~~~e~~~~~~~~~~~~~~~~~Gl~~~ 391 (429)
T d1s0aa_ 331 -----DWQQQVADIEVQLREQLAPARDAEMVADVRVLGA--------------IGVVETTHPVNMAALQKFFVEQGVWIR 391 (429)
T ss_dssp -----HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETT--------------EEEEEESSCBCHHHHHHHHHHTTEECC
T ss_pred -----cccchhhHHHHHHHHHHHHhccCCceEEEeeccc--------------EEEEEecCcccHHHHHHHHHHCCcEEE
Confidence 23445555556666666543 33322333343 344454 3456778888999999998
Q ss_pred cCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhhC
Q 012785 422 SGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 422 pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l~ 456 (456)
|. .+.+|++ +..+++++++++++|.+.|+
T Consensus 392 ~~------g~~i~~~Ppl~it~~eid~~~~~l~~al~ 422 (429)
T d1s0aa_ 392 PF------GKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422 (429)
T ss_dssp CB------TTEEEECCCTTCCHHHHHHHHHHHHHHTS
T ss_pred ec------CCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence 72 4688998 44599999999999998864
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.63 E-value=2.7e-14 Score=135.76 Aligned_cols=269 Identities=11% Similarity=0.036 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh---hhhcCCeEeee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI---TDCVKSRLYKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~---~~~~g~~~~~~ 218 (456)
..++|+.+|++++. +..+++|+|+++++..++..++.+++ .+++....+...... ....+.....+
T Consensus 40 ~~~l~~~la~~~g~-------~~~v~f~~sGt~An~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (345)
T d1v72a1 40 TAQVKRKFCEIFER-------DVEVFLVPTGTAANALCLSAMTPPWG----NIYCHPASHINNDECGAPEFFSNGAKLMT 108 (345)
T ss_dssp HHHHHHHHHHHHTS-------CCEEEEESCHHHHHHHHHHTSCCTTE----EEEECTTSHHHHSSTTHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHHHCC-------CcEEEECCchHHHHHHHHHHHHhcCC----ccccccccceeeechhhHHHhcCcccccc
Confidence 47899999999974 45799999999999999999988887 777666554333322 23334444433
Q ss_pred cc------Ccccccc---------CCCe-EEEEcCCCCCCcccch--------HHhhhcCcEEEeeecCCCC----CCCC
Q 012785 219 AG------DAKRFNK---------DGPY-IELVTSPNNPDGSVRQ--------SVVNRSGGILVHDLAYYWP----QYTS 270 (456)
Q Consensus 219 ~~------d~~~l~~---------~~~~-~i~v~~P~NPtG~~~~--------~l~~~~~~~iI~De~y~~~----~~~~ 270 (456)
.. |.+.++. ..+. .++..++.|+.|...+ ++|+++|++++.|+++.+. ....
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 188 (345)
T d1v72a1 109 VDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS 188 (345)
T ss_dssp CCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC
T ss_pred cccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccC
Confidence 22 2222221 1222 3445566777777644 2789999999999999731 1111
Q ss_pred CC---CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 271 IT---YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 271 ~~---~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
.. ...+......+..|..+ .+. |......................+.+.....++.. .... . +
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~-~~~~--~--------~ 254 (345)
T d1v72a1 189 PAEMTWKAGVDALSFGATKNGV-LAA--EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQI-DAYL--T--------D 254 (345)
T ss_dssp TTTTTGGGTCCEEEECCGGGTC-SSC--EEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHH-HHHT--S--------T
T ss_pred HHHhhccccccccccCcccccc-ccc--cccccchhhhhhhccccccccccccchhhHHhhhh-HHHH--H--------H
Confidence 11 11233444444555433 222 33333323333333332222233333333333222 2221 1 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCC
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFG 427 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg 427 (456)
....+......++.+.+.+.+.+++++.+..|.+ +|+++++++ ....+.|+++||.+.++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~-------------~niv~~~~~---~~~~~~L~~~gi~v~~~~--- 315 (345)
T d1v72a1 255 DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTE-------------ANILFCRLD---SAMIDALLKAGFGFYHDR--- 315 (345)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCC-------------SSEEEEEEC---HHHHHHHHHTTCBCBCSS---
T ss_pred hhhhhhccchhhHHHHHHHHHHhcCCcEeccCCC-------------ccEEEEEcC---HHHHHHHHHcCCCccccC---
Confidence 3344555566677777778888887776655443 347888875 345667888999886542
Q ss_pred CCCCeEEEEecC--ChhHHHHHHHHHHhh
Q 012785 428 FSPKYVRISMLD--RDENYNLFVQRLSKI 454 (456)
Q Consensus 428 ~~~~~iRis~~~--~~e~i~~~l~~L~~~ 454 (456)
.+++.+||+++. |+|+++.+++.|+++
T Consensus 316 ~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 316 WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 247899999864 899999999999975
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.62 E-value=4e-15 Score=147.58 Aligned_cols=277 Identities=11% Similarity=0.076 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcC--------C-
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVK--------S- 213 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g--------~- 213 (456)
.+...+++.+.... ...+.+++++++++|++.+++.... .+.. +|+...-+|++....+.... .
T Consensus 92 ~~~~~la~~~~~~~---~~~~~v~f~~sGseA~e~Alk~ar~~t~r~---~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p 165 (427)
T d2gsaa_ 92 ALENVLAEMVNDAV---PSIEMVRFVNSGTEACMAVLRLMRAYTGRD---KIIKFEGCYHGHADMFLVKAGSGVATLGLP 165 (427)
T ss_dssp HHHHHHHHHHHHHS---TTCSEEEEESSHHHHHHHHHHHHHHHHCCC---EEEEETTCCCCSCGGGCSSCCHHHHHTTCC
T ss_pred hHHHHHHHHHHhhC---CccccccccCCcHHHHHHHHHHHHHhcCCC---eEEEEecccccCcceeeeecCCcccccCCC
Confidence 44555666654321 1236899999999999999997643 2222 89999999998765543321 1
Q ss_pred -----------eEeeec-cCcccccc------CCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCC
Q 012785 214 -----------RLYKWA-GDAKRFNK------DGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWP 266 (456)
Q Consensus 214 -----------~~~~~~-~d~~~l~~------~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~ 266 (456)
+...++ .|.+.++. .+..++++..-+.-.|...+ ++|+++|+++|.||++.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~ 245 (427)
T d2gsaa_ 166 SSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF 245 (427)
T ss_dssp SCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred CCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc
Confidence 011111 23444432 24456666433433465544 3899999999999999864
Q ss_pred CCCCCC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHH---HhhccCcCChHHHHHHHHHHHhhhCC
Q 012785 267 QYTSIT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKY---IELNTIGVSKDSQLRAAKVLKVVSDS 338 (456)
Q Consensus 267 ~~~~~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~---~~~~~~~~s~~~q~~a~~~L~~~~~~ 338 (456)
.++.. ..-..+|+ +++|.+| .|+.+|.+++. +++++.+... ....|++.++++..++.+.|+.+.+.
T Consensus 246 -r~g~~~~~~~~gi~PDi~--~~gK~lg-gG~p~~a~~~~-~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~ 320 (427)
T d2gsaa_ 246 -RIAYGGVQEKFGVTPDLT--TLGKIIG-GGLPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQP 320 (427)
T ss_dssp -TTBTTCHHHHTTCCCSEE--EECGGGG-TTSCCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTST
T ss_pred -eecccchHHhcCCCHHHH--hhhhccC-CCcceeeeeeh-HHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhh
Confidence 22221 11123454 4889998 89999999996 8888877542 23468899999999999999977653
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecC---------cc---H
Q 012785 339 CKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE---------QE---I 406 (456)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~---------~~---~ 406 (456)
+.+++..+.-+.-++.+.+..++.+.......-+++.. +.|..-+ .+ .
T Consensus 321 ---------~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~-----------i~~~~~~v~~~~~~~~~d~~~~ 380 (427)
T d2gsaa_ 321 ---------GTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFG-----------FFFTEGPVHNYEDAKKSDLQKF 380 (427)
T ss_dssp ---------THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEE-----------EESSSCCCCSHHHHTTSCHHHH
T ss_pred ---------hHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEE-----------EEEeccCCCCHHHhhcccHHHH
Confidence 33344444444444444444445442211112223311 1111111 01 1
Q ss_pred HHHHHHHHhCCEEeecCCCCCCCCCeEEEEecCChhHHHHHHHHHHhhhC
Q 012785 407 EDCESFLKGNKILTRSGKHFGFSPKYVRISMLDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 407 ~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~~~e~i~~~l~~L~~~l~ 456 (456)
..+...+.++||.+.|+.. . .+-++++.+++++++++++|+++++
T Consensus 381 ~~~~~~ll~~Gv~l~p~~~----~-~~~~~l~~Te~dId~~l~al~~al~ 425 (427)
T d2gsaa_ 381 SRFHRGMLEQGIYLAPSQF----E-AGFTSLAHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp HHHHHHHHHTTEECCSSTT----S-CEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEEECCCCC----c-ceeCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455667799999988431 1 1235666699999999999999875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=3.1e-14 Score=138.10 Aligned_cols=199 Identities=13% Similarity=0.113 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----cCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----VKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----~g~~~~~~ 218 (456)
..|+++|+.+.+ .+..+++++++.|+..++ .++.+|| +|++....|.+....+.. .|.++..+
T Consensus 58 ~~lE~~la~LE~--------~~~a~~~sSGmaAi~~~l-~~l~~gd----~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~ 124 (393)
T d1n8pa_ 58 ENLERAVAALEN--------AQYGLAFSSGSATTATIL-QSLPQGS----HAVSIGDVYGGTHRYFTKVANAHGVETSFT 124 (393)
T ss_dssp HHHHHHHHHHTT--------CSEEEEESCHHHHHHHHH-HTSCSSC----EEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred HHHHHHHHHHhC--------CceEEEecCchhHHHhhh-hcccCCC----eeeeeeeecccchhhhhhhhhcccceeEEe
Confidence 466666666653 345666666688887665 6678899 999999999887666554 46665555
Q ss_pred ccCccccc---cCCCeEEEEcCCCCCCcccch-----HHhh----hcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCc
Q 012785 219 AGDAKRFN---KDGPYIELVTSPNNPDGSVRQ-----SVVN----RSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 219 ~~d~~~l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~----~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~S 285 (456)
+.+.+.++ ..++++|++.+|.||+..+.+ ++++ ++|+++|+|..|..| ...|+ ..+-+|++.|.+
T Consensus 125 ~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl--~~GADiVvhS~T 202 (393)
T d1n8pa_ 125 NDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPL--NFGADIVVHSAT 202 (393)
T ss_dssp SSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGG--GGTCSEEEEETT
T ss_pred ecchHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCch--hhCCCEEEEccc
Confidence 44444443 347899999999999999977 3555 689999999998743 22334 345579999999
Q ss_pred ccc-CCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 286 KST-GHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 286 K~~-g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
|.+ |+..+-.|.++..++++.++++..+.......++.....+..-|+. +.-..++..++...+
T Consensus 203 Kyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T---------------l~lR~~~~~~nA~~l 267 (393)
T d1n8pa_ 203 KYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT---------------LHLRVRQAALSANKI 267 (393)
T ss_dssp TTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHH
T ss_pred cccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc---------------hhhHHHHHHHHHHHH
Confidence 999 5666778888777678889999888877888899988888887762 444556667777888
Q ss_pred HHHHHhc
Q 012785 365 RMAVQKS 371 (456)
Q Consensus 365 ~~~L~~~ 371 (456)
.+.|+.+
T Consensus 268 A~~L~~~ 274 (393)
T d1n8pa_ 268 AEFLAAD 274 (393)
T ss_dssp HHHHTSC
T ss_pred HHHHHhc
Confidence 9999764
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.60 E-value=1.3e-13 Score=133.79 Aligned_cols=246 Identities=11% Similarity=0.122 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEeee
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYKW 218 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~ 218 (456)
..|++.|+++.+ .+..+.+++++.|+..++.++.++|| +|++.+..|.+.... +...|.++..+
T Consensus 62 ~~le~~la~LEg--------~~~a~~~sSGmaAi~~~~l~l~~~gd----~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~ 129 (394)
T d1e5ea_ 62 SNLEGKIAFLEK--------TEACVATSSGMGAIAATVLTILKAGD----HLISDECLYGCTHALFEHALTKFGIQVDFI 129 (394)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhC--------CcceeeeccchHHHHHHHHhhccccc----ccccccceeehhhHhHHHHhhccceeeecc
Confidence 467777777664 35778888889999999999999999 999999999775544 44568777766
Q ss_pred cc-Ccccccc---CCCeEEEEcCCCCCCcccch--H---Hh-hhcCcEEEeeecCCCCC-CCCCCCCCCCcEEEecCccc
Q 012785 219 AG-DAKRFNK---DGPYIELVTSPNNPDGSVRQ--S---VV-NRSGGILVHDLAYYWPQ-YTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 219 ~~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~--~---l~-~~~~~~iI~De~y~~~~-~~~~~~~~~~~i~i~S~SK~ 287 (456)
+. |.+.++. .++++|++.+|.||+..+.+ + .+ +++++++|+|..+..|- ..|+ ..+-+|+++|.||.
T Consensus 130 d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl--~~GaDiVvhS~TKy 207 (394)
T d1e5ea_ 130 NTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV--DFGVDVVVHSATKY 207 (394)
T ss_dssp CTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG--GGTCSEEEEETTTT
T ss_pred CCCCHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCch--hcCCCEEEechhhh
Confidence 54 4455543 46799999999999999866 2 33 34789999999987542 2334 33457999999999
Q ss_pred c-CCCCceEEEEEEeCHHHHHHHHHH--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 012785 288 T-GHAGTRIGWALVKDMEVAKKMTKY--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQL 364 (456)
Q Consensus 288 ~-g~~G~RiG~l~~~~~~~~~~l~~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 364 (456)
+ |+..+-.|.++++ .+.....+.. +.......++...+.+...|+ .+.-..++..++...+
T Consensus 208 ~~GhsDv~~G~v~~~-~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~---------------TL~lRm~r~~~nA~~l 271 (394)
T d1e5ea_ 208 INGHTDVVAGLICGK-ADLLQQIRMVGIKDITGSVISPHDAWLITRGLS---------------TLNIRMKAESENAMKV 271 (394)
T ss_dssp TTCSSCCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT---------------THHHHHHHHHHHHHHH
T ss_pred cCCCcccccccccch-hhHHHHHHHHHHHHhhCCCCChHHHHHHHhhch---------------hHHHHHHHHHHHHHHH
Confidence 8 5566667777775 7766655433 333456688888888887776 2445667777888999
Q ss_pred HHHHHhcCCccccCCCCcc----cccccccCCCCCceEEeecCccHHHHHHHHHhCCE
Q 012785 365 RMAVQKSGLFSVPELPSQF----CTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKI 418 (456)
Q Consensus 365 ~~~L~~~~~~~~~~~~g~~----~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI 418 (456)
.+.|++++.++....+|.- +...++.....+..+.+.+....+...+.+.+-.+
T Consensus 272 A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l 329 (394)
T d1e5ea_ 272 AEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKL 329 (394)
T ss_dssp HHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSS
T ss_pred HHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCc
Confidence 9999998765432222210 01111112222333445555555555555555443
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.60 E-value=3.8e-13 Score=129.93 Aligned_cols=279 Identities=10% Similarity=0.077 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHHHhcCccCCCce--EEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHH--IVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYK 217 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~--I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~ 217 (456)
..+.|+.++++++. ++++ +++|+|+|+++++++..+..+++ .+++....+.. ........+.....
T Consensus 35 ~~~~r~~l~~l~~~------~~~~~~i~~t~s~T~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (361)
T d1m32a_ 35 VEQIRQQLTALATA------SEGYTSVLLQGSGSYAVEAVLGSALGPQD----KVLIVSNGAYGARMVEMAGLMGIAHHA 104 (361)
T ss_dssp HHHHHHHHHHHHCS------SSSEEEEEEESCHHHHHHHHHHHSCCTTC----CEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHhCC------CCCCEEEEECCCHHHHHHHHHHHhhhhcc----ccceeeehhhhhhHHHHhhhhhccccc
Confidence 47888999998874 3344 77888999999999999988887 56655544332 22223333443332
Q ss_pred ecc--Ccc---------ccccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEE
Q 012785 218 WAG--DAK---------RFNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLML 281 (456)
Q Consensus 218 ~~~--d~~---------~l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i 281 (456)
... +.. .....+++++.++.-+|-||...+ ++|+++|+++++|.++.-....--....+-++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~ 184 (361)
T d1m32a_ 105 YDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLI 184 (361)
T ss_dssp EECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred ccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEE
Confidence 221 111 011246788999889999999987 4789999999999999843222112345678999
Q ss_pred ecCcccc-CCCCceEEEEEEeCHHHHHHHHH------------------HHhhccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 282 FTVSKST-GHAGTRIGWALVKDMEVAKKMTK------------------YIELNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 282 ~S~SK~~-g~~G~RiG~l~~~~~~~~~~l~~------------------~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
+|..|.+ |.+| +|++++. ++..++... .......+++.....+....+.....
T Consensus 185 ~s~~K~l~gp~G--~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~----- 256 (361)
T d1m32a_ 185 SSANKCIQGVPG--FAFVIAR-EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAK----- 256 (361)
T ss_dssp EESSSTTCCCSS--EEEEEEE-HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH-----
T ss_pred eeecccccCCCC--ceEEEec-hhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHH-----
Confidence 9999988 5567 7888886 654433221 11112345566666666666653222
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCE
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKI 418 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI 418 (456)
+...+....+.++..+.+.+.++..+.... .+++.. + ...+.+.+++ +...+...|.++||
T Consensus 257 ----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~r---------s-~~v~~~~~p~~~~~~~~~~~~~l~~~gi 321 (361)
T d1m32a_ 257 ----EGGVAARHQRYQQNQRSLVAGMRALGFNTL-LDDELH---------S-PIITAFYSPEDPQYRFSEFYRRLKEQGF 321 (361)
T ss_dssp ----HTHHHHHHHHHHHHHHHHHHHHHHTTCCBS-SCGGGB---------C-SSEEEEECCCCTTCCHHHHHHHHHHTTE
T ss_pred ----hcchhhhHHHHHHHHHHHHHHHhhcCCccc-CChhhc---------C-CcEEEEECCCCCCCCHHHHHHHHHHCCc
Confidence 223455556667777778888877653222 221110 1 1123344442 46778899999999
Q ss_pred EeecCCCCCCCCCeEEEEec--CChhHHHHHHHHHHhhh
Q 012785 419 LTRSGKHFGFSPKYVRISML--DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis~~--~~~e~i~~~l~~L~~~l 455 (456)
.+.+|... .++.+||+.. .++++++++++.|+++|
T Consensus 322 ~i~~G~~~--~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 322 VIYPGKVS--QSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp ECEECCCS--SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred EEECCCcC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 99988643 3678999953 38999999999999886
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=6.5e-14 Score=136.96 Aligned_cols=282 Identities=15% Similarity=0.112 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh--hhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI--TDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~--~~~~g~~~~~~~~ 220 (456)
.+.|+.++++++. + ++..|++|.|+|++++.++..++.+++ ++++....+...... ....+.....+..
T Consensus 55 ~ea~~~l~~llg~---~--~~~~ii~~gsgT~a~~~~i~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (388)
T d1h0ca_ 55 DEIKEGIQYVFQT---R--NPLTLVISGSGHCALEAALVNVLEPGD----SFLVGANGIWGQRAVDIGERIGARVHPMTK 125 (388)
T ss_dssp HHHHHHHHHHHTC---C--CSEEEEESSCHHHHHHHHHHHHCCSSC----CEEECBSSHHHHHHHHHHHHHC--CBCCBC
T ss_pred HHHHHHHHHHhCC---C--CCcEEEEcCcHHHHHHHHHHHhhccCC----ceeeecccceeeeecccccccccccccccc
Confidence 5666666666653 1 233689999999999999999999999 898888776654332 3334544443332
Q ss_pred C------cccc----ccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 221 D------AKRF----NKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 221 d------~~~l----~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
+ .+.+ ...+++++.++..+|.||.+.+ ++|+++|+++++|.++.-.....-....+-++++.|..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~ 205 (388)
T d1h0ca_ 126 DPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQ 205 (388)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESS
T ss_pred CCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceeccccc
Confidence 2 1111 1236789999999999999877 48999999999999887533322224456679999999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHHh-----------------------hccCcCChHHHHHHHHHHHhhhCCCCCC
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIE-----------------------LNTIGVSKDSQLRAAKVLKVVSDSCKPS 342 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~~-----------------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~ 342 (456)
|.++.|+ -+|+++.. +...+.+..... .....++.....+..+.+..+.
T Consensus 206 K~~~gp~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~------ 277 (388)
T d1h0ca_ 206 KALNAPP-GTSLISFS-DKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIA------ 277 (388)
T ss_dssp STTCCCT-TCEEEEEC-HHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHH------
T ss_pred ccccCCC-ceEEEeec-HHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHH------
Confidence 9885343 36777775 776665532110 0111233333344444444321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHH-HHhCCEE
Q 012785 343 GSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESF-LKGNKIL 419 (456)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~-l~~~gI~ 419 (456)
+.-++...++.++..+.+++.+...+...+.. .... ..+..+-+.+++ +.+++... +.++||.
T Consensus 278 ----~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~-~~~~---------rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~ 343 (388)
T d1h0ca_ 278 ----EQGLENSWRQHREAAAYLHGRLQALGLQLFVK-DPAL---------RLPTVTTVAVPAGYDWRDIVSYVIDHFDIE 343 (388)
T ss_dssp ----HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSC-SGGG---------BCTTEEEEECCTTCCHHHHHHHHHHHHCEE
T ss_pred ----HhccccccccccchhHHHHHHHhhcCcccccC-CHHH---------cCCeEEEEECCCCCCHHHHHHHHHhcCCEE
Confidence 12255667777778888888888776433221 1111 111234455643 45555544 4667999
Q ss_pred eecCCCCCCCCCeEEEE-ec--CChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRIS-ML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis-~~--~~~e~i~~~l~~L~~~l~ 456 (456)
+..|...- ..+.|||| ++ .+.|+++.+++.|+++|+
T Consensus 344 v~~G~~~~-~~~~iRis~~g~~~t~edid~li~aL~~~L~ 382 (388)
T d1h0ca_ 344 IMGGLGPS-TGKVLRIGLLGCNATRENVDRVTEALRAALQ 382 (388)
T ss_dssp CEECCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred EeCCchhh-cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99986432 36789999 64 378999999999999873
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.60 E-value=7.7e-14 Score=132.61 Aligned_cols=204 Identities=9% Similarity=0.115 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEeeec
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYKWA 219 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~~ 219 (456)
.|++.+|.+.+ .+..+++++++.|+..++.+++++|| +|++..+.|.+.... ++..|+++..++
T Consensus 2 aLE~~la~Leg--------~~~a~~~sSGMaAi~~~l~~ll~~Gd----~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d 69 (331)
T d1pffa_ 2 ALEGKIAKLEH--------AEACAATASGMGAIAASVWTFLKAGD----HLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHCCTTC----EEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHhCCCC----EEEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence 57888888875 35788889999999999999999999 999999999775544 455688877665
Q ss_pred c-Ccccccc---CCCeEEEEcCCCCCCcccch-----HH-hhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCcccc
Q 012785 220 G-DAKRFNK---DGPYIELVTSPNNPDGSVRQ-----SV-VNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVSKST 288 (456)
Q Consensus 220 ~-d~~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l-~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~SK~~ 288 (456)
. |.+.++. .++++|++.+|.||+..+.+ ++ ++++++++|+|..+..| ...|+ ..+-+|++.|.+|.+
T Consensus 70 ~~d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl--~~GaDiVv~S~TKy~ 147 (331)
T d1pffa_ 70 MAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL--DLGVDIVVHSATKYI 147 (331)
T ss_dssp TTSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG--GGTCSEEEEETTTTT
T ss_pred ccchhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccccccc--ccCCCEEEecchhhc
Confidence 4 4455543 47799999999999999976 24 35689999999988743 12333 334579999999999
Q ss_pred C-CCCceEEEEEEeCHHHHHHHHHH--HhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 012785 289 G-HAGTRIGWALVKDMEVAKKMTKY--IELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLR 365 (456)
Q Consensus 289 g-~~G~RiG~l~~~~~~~~~~l~~~--~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 365 (456)
+ +...-.|.++.+ ++.....+.. +.......++.....+..-|+ .+.-..++..++...+.
T Consensus 148 ~Gh~d~~~G~v~~~-~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~---------------Tl~~Rm~~~~~nA~~lA 211 (331)
T d1pffa_ 148 NGHTDVVAGLVCSR-ADIIAKVKSQGIKDITGAIISPHDAWLITRGTL---------------TLDMRVKRAAENAQKVA 211 (331)
T ss_dssp SSSSSCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccccc-ccchhhhhhhhhhhccCCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Confidence 4 455556777774 6665554432 333456678888888777776 34455667778888999
Q ss_pred HHHHhcCCcccc
Q 012785 366 MAVQKSGLFSVP 377 (456)
Q Consensus 366 ~~L~~~~~~~~~ 377 (456)
+.|++++.++..
T Consensus 212 ~~L~~hp~V~~V 223 (331)
T d1pffa_ 212 EFLHEHKAVKKV 223 (331)
T ss_dssp HHHHHCTTCCCE
T ss_pred HhhhhCCcEEee
Confidence 999998765443
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.58 E-value=1.8e-13 Score=133.17 Aligned_cols=272 Identities=13% Similarity=0.094 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|++.+|++++. ++.++++++|.|+.+++.+| .++|| +|+++..+|......+...|.+++.++.
T Consensus 33 v~~~E~~la~~~g~--------~~ai~~~sgt~Al~~al~al~~~~gd----eVi~~~~~~~~~~~ai~~~g~~pv~~d~ 100 (376)
T d1mdoa_ 33 NQELEAAFCRLTGN--------QYAVAVSSATAGMHIALMALGIGEGD----EVITPSMTWVSTLNMIVLLGANPVMVDV 100 (376)
T ss_dssp HHHHHHHHHHHHCC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCHHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHCc--------CeEEEeCCHHHHHHHHHHHhCCCCCC----EEEEecccccccccchhccccceeeecc
Confidence 47899999999974 47788888899999999999 78999 9999999999999999999999987665
Q ss_pred Ccc-------cccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCC-CCCCCcEEEec
Q 012785 221 DAK-------RFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSIT-YPADHDLMLFT 283 (456)
Q Consensus 221 d~~-------~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~-~~~~~~i~i~S 283 (456)
|.+ .++. .++++|++++ ..|...+ ++|+++|+++|+|.++.-. .+.... ...+ ..+.|
T Consensus 101 ~~~~~~~d~~~l~~~i~~~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g--~~~~S 175 (376)
T d1mdoa_ 101 DRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARG--TAIFS 175 (376)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSS--EEEEE
T ss_pred cccccCCCHHHHHHhcCCCCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeeccccc--Ccccc
Confidence 543 3332 3678887754 4565533 4899999999999998732 122221 1222 34556
Q ss_pred C--ccccCCCCceEEEEEEeCHHHHHHHHHHHhhc------------------------cCcCChHHHHHHHHHHHhhhC
Q 012785 284 V--SKSTGHAGTRIGWALVKDMEVAKKMTKYIELN------------------------TIGVSKDSQLRAAKVLKVVSD 337 (456)
Q Consensus 284 ~--SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~------------------------~~~~s~~~q~~a~~~L~~~~~ 337 (456)
| +|.++ . ..-|.+++.++++.++++..+... ....+.+....+..-|.
T Consensus 176 f~~~K~l~-~-g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~---- 249 (376)
T d1mdoa_ 176 FHAIKNIT-C-AEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ---- 249 (376)
T ss_dssp CCTTSSSC-S-SSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH----
T ss_pred CCCcCCCC-C-CCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhh----
Confidence 5 58775 3 336899998899999888775321 11223333333333232
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-----cHHHHHHH
Q 012785 338 SCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ-----EIEDCESF 412 (456)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~ 412 (456)
.+++..++.++.++.+.+.|++.+......+...... ... +..+.++. +.+.+.+.
T Consensus 250 -----------~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~Rd~l~~~ 310 (376)
T d1mdoa_ 250 -----------KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIH-------AWH-LFIIRVDEARCGITRDALMAS 310 (376)
T ss_dssp -----------THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEEC-------CCS-CEEEECCHHHHSSCHHHHHHH
T ss_pred -----------hhhHHHHHHhhhhhhhhhhcccccccccccccccccc-------ccc-ccccccccccchhhHHHHHHH
Confidence 2344455566777778888887765444333222110 000 11222221 34678889
Q ss_pred HHhCCEEeecCCC-----------CCC---------CCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 413 LKGNKILTRSGKH-----------FGF---------SPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 413 l~~~gI~v~pg~~-----------fg~---------~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
|+++||.+++... |.. ..+.|.|.+.. ++++++..++.|++++
T Consensus 311 L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 311 LKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999875321 111 13457776543 8899999999999875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.56 E-value=7.6e-14 Score=138.75 Aligned_cols=260 Identities=13% Similarity=0.061 Sum_probs=168.8
Q ss_pred ceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeec---------cCcccccc-----
Q 012785 164 HHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWA---------GDAKRFNK----- 227 (456)
Q Consensus 164 ~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~---------~d~~~l~~----- 227 (456)
...++..|+++++.+++.++.. +++ +|+++.-.++.....+...|++.+.++ +|.+.++.
T Consensus 131 ~~~~~~~~t~~~~~~~l~a~r~~~~~~----~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~ 206 (434)
T d2z67a1 131 HAIATPISTGMSISLCLSAARKKYGSN----VVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKE 206 (434)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHHCCC----EEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHH
T ss_pred ceeecCcHHHHHHHHHHHHHHHhhcCc----eEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhh
Confidence 3556677777777777777643 566 999999999988899999998876543 45555532
Q ss_pred ---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-C----CCCCCCCCCcEEEecCccccCCCCce
Q 012785 228 ---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-Y----TSITYPADHDLMLFTVSKSTGHAGTR 294 (456)
Q Consensus 228 ---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~----~~~~~~~~~~i~i~S~SK~~g~~G~R 294 (456)
.++.+|++++|++++|.+.+ ++|+++|+++++|++|.... + ...+....-+++++|++|.++ .+.-
T Consensus 207 ~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~-~~~g 285 (434)
T d2z67a1 207 IELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLL-TPIG 285 (434)
T ss_dssp HHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHC-CCSS
T ss_pred hhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccc-cCCC
Confidence 25677888899999999855 48999999999999997421 1 111122345789999999887 3344
Q ss_pred EEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc---
Q 012785 295 IGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKS--- 371 (456)
Q Consensus 295 iG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~--- 371 (456)
.|++...++.+.+++...........+.....++...+. .+.++...++..+..+++.+.|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~-------------~~g~~~~~~~~~~~a~~l~~~L~~l~~~ 352 (434)
T d2z67a1 286 GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-------------SKNYLELVKNQKNSKKLLDELLNDLSKK 352 (434)
T ss_dssp CEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHH-------------HhcchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 577777778887777655432233333333333333333 3344555666666667777777654
Q ss_pred CCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeec----CCCCC------CCCCeEEEEecC--
Q 012785 372 GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRS----GKHFG------FSPKYVRISMLD-- 439 (456)
Q Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~p----g~~fg------~~~~~iRis~~~-- 439 (456)
.+..+...+. .....+.++.+...+...|.+.||.... ...+| ...+++|++++.
T Consensus 353 ~g~~ll~~~~-------------~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~ 419 (434)
T d2z67a1 353 TGGKFLDVES-------------PIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGV 419 (434)
T ss_dssp SSCCBCCCCC-------------SSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTC
T ss_pred cCceecCCCC-------------CceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCC
Confidence 1222222111 1123344455667788888999996432 21111 136789999764
Q ss_pred ChhHHHHHHHHHHhh
Q 012785 440 RDENYNLFVQRLSKI 454 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~ 454 (456)
++|+++.++++|+++
T Consensus 420 T~edID~~i~~L~kI 434 (434)
T d2z67a1 420 RTEDIVNSVSKLEKI 434 (434)
T ss_dssp CHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhcC
Confidence 899999999999875
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.55 E-value=1.6e-14 Score=143.46 Aligned_cols=262 Identities=11% Similarity=-0.001 Sum_probs=169.9
Q ss_pred CceEEEccCHHHHHHHHHHHhcC--CCCCCCcEEEEeCCCCCChhhhhhhcCCeE--------------eeeccC-----
Q 012785 163 NHHIVVGTGSTQLFQAALYALSS--QDASEPISVVSAAPYYSSYPSITDCVKSRL--------------YKWAGD----- 221 (456)
Q Consensus 163 ~~~I~~t~G~~~al~~~~~~l~~--~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~--------------~~~~~d----- 221 (456)
-+++++++++++|++.+++.... ..+ +|+...-+|++....+...+... ++.+..
T Consensus 100 ~~~v~f~~sGseA~e~Alk~Ar~~t~r~----~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (431)
T d1zoda1 100 LDRALLLSTGAESNEAAIRMAKLVTGKY----EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRF 175 (431)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHHTCC----EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCC
T ss_pred cceeeecccccchHHHHHHHHHHhcCCc----ceeecccccccccchhhcccccccccccCCcccCceeeeeeccccccc
Confidence 36899999999999999987632 233 89999999999876665432211 111100
Q ss_pred -----------cccc-------ccCCCeEEEEcCCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCC
Q 012785 222 -----------AKRF-------NKDGPYIELVTSPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYP 274 (456)
Q Consensus 222 -----------~~~l-------~~~~~~~i~v~~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~ 274 (456)
.+.+ ...+..++++..-+.-.|...+ ++|+++|+++|.||++.+...++....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~ 255 (431)
T d1zoda1 176 ERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFA 255 (431)
T ss_dssp EETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred ccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccc
Confidence 0000 0124456666433433455433 389999999999999997655543221
Q ss_pred -----CCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH--hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 275 -----ADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI--ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 275 -----~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~--~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
-..+| .+++|.++ .|+.++.+++. +++.+...... ...+++.++++..++.+.|+.+.+.
T Consensus 256 ~~~~gv~PDi--~~~gK~l~-gG~p~~av~~~-~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~--------- 322 (431)
T d1zoda1 256 CQRDGVTPDI--LTLSKTLG-AGLPLAAIVTS-AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD--------- 322 (431)
T ss_dssp HHHHTCCCSE--EEECHHHH-TTSSCEEEEEC-HHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHT---------
T ss_pred cccCCCCcch--hccccccc-cccccceeeee-ecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhh---------
Confidence 12344 45899999 89999999996 87777665532 3468899999999999999876553
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeec---C-------ccHHHHHHHHHhCC
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKC---E-------QEIEDCESFLKGNK 417 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~---~-------~~~~~~~~~l~~~g 417 (456)
+.+++..+.-+..++.+.+.+.+.+.+.-.+..|.+ .-+.+ + .....+.+.+.++|
T Consensus 323 ~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm--------------~~ie~~~~~~~~~~~~~~~~~i~~~~~~~G 388 (431)
T d1zoda1 323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL--------------LGVEIVKDRRTKEPADGLGAKITRECMNLG 388 (431)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTE--------------EEEEEEEETTTTEECTTHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceE--------------EEEEEecCCcccCccHHHHHHHHHHHHHhC
Confidence 455555555555556666666666655445555554 22222 1 12355778888999
Q ss_pred EEeecCCCCCCCCCeEEEEe--cCChhHHHHHHHHHHhhhC
Q 012785 418 ILTRSGKHFGFSPKYVRISM--LDRDENYNLFVQRLSKILS 456 (456)
Q Consensus 418 I~v~pg~~fg~~~~~iRis~--~~~~e~i~~~l~~L~~~l~ 456 (456)
+....- ..+...+.||++- ..+++++++++++|.+.++
T Consensus 389 l~~~~~-~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~ 428 (431)
T d1zoda1 389 LSMNIV-QLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428 (431)
T ss_dssp EECCEE-CCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cccCee-eecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 864321 1122467899984 3599999999999988763
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.54 E-value=7.1e-14 Score=137.37 Aligned_cols=281 Identities=11% Similarity=0.041 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh------cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL------SSQDASEPISVVSAAPYYSSYPSITDCVKSRLY 216 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l------~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~ 216 (456)
.+.|+.+|++++. ++++|++|++++++++.++... ..+++ .|++.+-.++.........+.++.
T Consensus 73 e~~R~~iA~llga------~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~~~~~~~~~~~ 142 (404)
T d1qz9a_ 73 ERLGNRLATLIGA------RDGEVVVTDTTSINLFKVLSAALRVQATRSPER----RVIVTETSNFPTDLYIAEGLADML 142 (404)
T ss_dssp HHHHHHHHTTTTC------CTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTC----CEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCCcEEEecCchHHHHHHhhhhhhhhcccCCCc----EEEEeccccchHHHHHHhhhheee
Confidence 4688888888875 5678999999999998776532 35667 677777666654444333333222
Q ss_pred ee------ccCccccc---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEe
Q 012785 217 KW------AGDAKRFN---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLF 282 (456)
Q Consensus 217 ~~------~~d~~~l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~ 282 (456)
.. ..+.+.++ ..++++|.++..+|.||..++ ++|+++++++++|-++............+.+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~ 222 (404)
T d1qz9a_ 143 QQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIG 222 (404)
T ss_dssp CSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEE
T ss_pred eeceeccccccchhHHHhcCCCceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEE
Confidence 11 12233332 347899999999999999988 47899999999999887533222223345678999
Q ss_pred cCccccCCCCceEEEEEEeCHHHHHHHHHH-----------------------HhhccCcCChHHHHHHHHHHHhhhCCC
Q 012785 283 TVSKSTGHAGTRIGWALVKDMEVAKKMTKY-----------------------IELNTIGVSKDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 283 S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~-----------------------~~~~~~~~s~~~q~~a~~~L~~~~~~~ 339 (456)
|..|.++.+.--.|+++.+ +...+.+... ........+..........+..+..-
T Consensus 223 s~~K~~~~~~g~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 300 (404)
T d1qz9a_ 223 CTYKYLNGGPGSQAFVWVS-PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQT- 300 (404)
T ss_dssp CSSSTTCCCTTCCCEEEEC-TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTS-
T ss_pred echhhcccCCceEEEEEec-hhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHh-
Confidence 9999775333346777775 5544332210 01112233444444444444433222
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEE
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKIL 419 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~ 419 (456)
..+.++.....+......+.+.+...+++++..|...- ..+..+-+..+ +.+.+.+.|.++||.
T Consensus 301 ------~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~---------~r~~~vsf~~~-~~~~v~~~L~~~gi~ 364 (404)
T d1qz9a_ 301 ------DMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHA---------KRGSHVSFEHP-EGYAVIQALIDRGVI 364 (404)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGG---------GBCSEEEEECT-THHHHHHHHHTTTEE
T ss_pred ------hHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCcc---------ceeeEEEEecC-CHHHHHHHHHHCCCE
Confidence 12333333333434434444444444556655443211 11224555565 466788889999997
Q ss_pred eecCCCCCCCCCeEEEEec---CChhHHHHHHHHHHhhhC
Q 012785 420 TRSGKHFGFSPKYVRISML---DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 420 v~pg~~fg~~~~~iRis~~---~~~e~i~~~l~~L~~~l~ 456 (456)
+.. ..++.||||++ .+++|++++++.|+++|+
T Consensus 365 ~~~-----r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~ 399 (404)
T d1qz9a_ 365 GDY-----REPRIMRFGFTPLYTTFTEVWDAVQILGEILD 399 (404)
T ss_dssp CEE-----ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred Eee-----cCCCeEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 632 12678999985 388999999999999873
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.53 E-value=5.5e-13 Score=132.88 Aligned_cols=280 Identities=11% Similarity=0.053 Sum_probs=175.3
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD 209 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~ 209 (456)
.|..... ..+|++.+|++++. ++++++++++.|+.+++++++++|| .|+.... |........
T Consensus 70 ~Y~~dpt-----~~~lE~~~a~l~G~--------e~al~~~SGt~An~~a~~~l~~~Gd----~Vi~~~~-f~~~~~~i~ 131 (456)
T d1c7ga_ 70 AYAGSEN-----FYHLEKTVKELFGF--------KHIVPTHQGRGAENLLSQLAIKPGQ----YVAGNMY-FTTTRFHQE 131 (456)
T ss_dssp CSSSCHH-----HHHHHHHHHHHHCC--------SEEEEESSHHHHHHHHHHHHCCTTE----EEEESSC-CHHHHHHHH
T ss_pred hccCCch-----HHHHHHHHHHHhCC--------CeEEECCCHHHHHHHHHHHhcCCCC----eEecCcc-hHHHHHHHH
Confidence 3665554 47999999999974 5889999999999999999999998 7765543 444444445
Q ss_pred hcCCeEeee----------------ccCcccccc-------CCCeEEEEcCCCCCCcc-cch--------HHhhhcCcEE
Q 012785 210 CVKSRLYKW----------------AGDAKRFNK-------DGPYIELVTSPNNPDGS-VRQ--------SVVNRSGGIL 257 (456)
Q Consensus 210 ~~g~~~~~~----------------~~d~~~l~~-------~~~~~i~v~~P~NPtG~-~~~--------~l~~~~~~~i 257 (456)
..|+..+.. .+|.+.++. .++.++++.+|+|+.|. +++ ++|+++|+.+
T Consensus 132 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~ 211 (456)
T d1c7ga_ 132 KNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKI 211 (456)
T ss_dssp HTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCE
T ss_pred HcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEE
Confidence 556655422 234444432 23468889999999864 333 3899999999
Q ss_pred EeeecCCC----------CCCCCCC--C-----CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhc----
Q 012785 258 VHDLAYYW----------PQYTSIT--Y-----PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELN---- 316 (456)
Q Consensus 258 I~De~y~~----------~~~~~~~--~-----~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~---- 316 (456)
++|.+... ..+.... . ...-+++.+|++|.++.++ -|+++.++++++++++......
T Consensus 212 ~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~ 289 (456)
T d1c7ga_ 212 FYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMP 289 (456)
T ss_dssp EEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCT
T ss_pred EEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCc
Confidence 99998742 1222111 0 0123577789999987553 3888888888888887653221
Q ss_pred -cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCC
Q 012785 317 -TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQP 395 (456)
Q Consensus 317 -~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~ 395 (456)
..+.+.....+++..+.... . .+++ +...++.++|.+.|.+.+ +.+..|.++.
T Consensus 290 ~~g~~~~~~~~a~a~~l~e~~-~--------~~~l----~~r~~~~~~L~e~L~~~g-~~vv~p~g~~------------ 343 (456)
T d1c7ga_ 290 SYGGLAGRDMEAMAIGLREAM-Q--------YEYI----EHRVKQVRYLGDKLREAG-VPIVEPTGGH------------ 343 (456)
T ss_dssp TTTTCCHHHHHHHHHHHHHHT-C--------HHHH----HHHHHHHHHHHHHHHHTT-CCBCSSCCSS------------
T ss_pred ccchhhHHHHHHHHHHHHHhc-C--------HHHH----HHHHHHHHHHHHHHHhcc-CCcccCCCCc------------
Confidence 12233333333333333211 1 2222 222345567888888875 4445555655
Q ss_pred ceEEeec-------Cc----cHHHHHHHHHhCCEEeecCCCC--CC----------CCCeEEEEecC---ChhHHHHHHH
Q 012785 396 AFAWLKC-------EQ----EIEDCESFLKGNKILTRSGKHF--GF----------SPKYVRISMLD---RDENYNLFVQ 449 (456)
Q Consensus 396 ~f~~~~~-------~~----~~~~~~~~l~~~gI~v~pg~~f--g~----------~~~~iRis~~~---~~e~i~~~l~ 449 (456)
..+++. +. ....+..++.+.||...+...+ +. ..+.+|+++.. ++++++..++
T Consensus 344 -~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae 422 (456)
T d1c7ga_ 344 -AVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVAD 422 (456)
T ss_dssp -EEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHH
T ss_pred -ceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHH
Confidence 344332 11 2345667778899976543221 11 23469999863 8899999999
Q ss_pred HHHhhhC
Q 012785 450 RLSKILS 456 (456)
Q Consensus 450 ~L~~~l~ 456 (456)
.|+++.+
T Consensus 423 ~i~~v~~ 429 (456)
T d1c7ga_ 423 GIIKLYQ 429 (456)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998753
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=8.7e-13 Score=128.54 Aligned_cols=267 Identities=12% Similarity=0.040 Sum_probs=166.6
Q ss_pred CCceEEEccCHHHHHHHHHHHhc---CCCCCCCcEEEEeCCCCCCh--hhhhhhcCCeEeeeccC-------cccc----
Q 012785 162 ENHHIVVGTGSTQLFQAALYALS---SQDASEPISVVSAAPYYSSY--PSITDCVKSRLYKWAGD-------AKRF---- 225 (456)
Q Consensus 162 ~~~~I~~t~G~~~al~~~~~~l~---~~gd~~~~~Vlv~~P~y~~~--~~~~~~~g~~~~~~~~d-------~~~l---- 225 (456)
+.+.|++|.|+|+++++++..+. ++|| +|++..-.++.. ...++..|.....+... .+.+
T Consensus 56 ~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd----~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
T d2bkwa1 56 KSQPFVLAGSGTLGWDIFASNFILSKAPNK----NVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKL 131 (382)
T ss_dssp TCEEEEEESCTTHHHHHHHHHHSCTTCSCC----EEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcCCCC----ceEEEEechhhhhhhhhccccccccccccccCCCCccchhHHHHHh
Confidence 45679999999999999999986 5688 898887655542 34455567665543321 1111
Q ss_pred ccCCCeEEEEcCCCCCCcccchH-----Hhhh--cCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcccc-CCCCceEEE
Q 012785 226 NKDGPYIELVTSPNNPDGSVRQS-----VVNR--SGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKST-GHAGTRIGW 297 (456)
Q Consensus 226 ~~~~~~~i~v~~P~NPtG~~~~~-----l~~~--~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~-g~~G~RiG~ 297 (456)
...++++++++..+|.||...+- +|++ +++++++|.++.-....--....+-++++.|-.|.+ |.+| +|+
T Consensus 132 ~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G--~g~ 209 (382)
T d2bkwa1 132 SQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG--LSI 209 (382)
T ss_dssp HHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC--EEE
T ss_pred hhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCc--hhh
Confidence 22467889898889999998762 4444 569999999887433222223445689999999988 7788 799
Q ss_pred EEEeCHHHHHHHHHHHh--------------------------hccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 298 ALVKDMEVAKKMTKYIE--------------------------LNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 298 l~~~~~~~~~~l~~~~~--------------------------~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
++++ +++.+++..... .....++...-.++.++|+.+.+ +-++
T Consensus 210 l~vs-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~----------~g~~ 278 (382)
T d2bkwa1 210 SLCS-SRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILE----------EGLH 278 (382)
T ss_dssp EEEC-HHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHH----------HCHH
T ss_pred hhcc-HHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHH----------hhhh
Confidence 9996 877665532211 11223444455555566664322 2344
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCC-CCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCCCCCCC
Q 012785 352 FTNHQMSTRWKQLRMAVQKSGLFSVPEL-PSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKHFGFSP 430 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~fg~~~ 430 (456)
...++.++..+.+++.+.+........+ .... +.....-+.++ +.+++.+.|+++||.+.+|..-....
T Consensus 279 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~---------~s~~v~~~~~~-~~~~~~~~L~~~gi~i~~G~~~~~~~ 348 (382)
T d2bkwa1 279 KRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNM---------SAHGLTAVYVA-DPPDVIAFLKSHGVVIAGGIHKDIGP 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTT---------BCSSCEEEECS-CHHHHHHHHHHTTEECBCCCCTTTGG
T ss_pred hhHHHHHHHHHHHHHHhhhcccccccccCchhc---------cCCcEEEEcCC-CHHHHHHHHHHCCeEEECCCChhhcC
Confidence 5556666777778877776432222111 1111 01112345555 45678889999999999886533456
Q ss_pred CeEEEE-ecC--ChhHH---HHHHHHHHhhh
Q 012785 431 KYVRIS-MLD--RDENY---NLFVQRLSKIL 455 (456)
Q Consensus 431 ~~iRis-~~~--~~e~i---~~~l~~L~~~l 455 (456)
+.|||+ ++. ++|++ ..+++.|++.|
T Consensus 349 ~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L 379 (382)
T d2bkwa1 349 KYIRIGHMGVTACNKNLPYMKNCFDLIKLAL 379 (382)
T ss_dssp GEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999 542 45554 44455554443
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.50 E-value=4.2e-12 Score=123.13 Aligned_cols=281 Identities=12% Similarity=0.066 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~ 220 (456)
.+.|+.++++++. + +...|+++.|++++++.++..+..+++ ++++..-.+.... ......+.....+..
T Consensus 54 ~~~r~~l~~ll~~---~--~~~~i~~~g~gT~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (377)
T d1vjoa_ 54 DEIQSLLRYVWQT---E--NPLTIAVSGTGTAAMEATIANAVEPGD----VVLIGVAGYFGNRLVDMAGRYGADVRTISK 124 (377)
T ss_dssp HHHHHHHHHHHTC---C--CSCEEEESSCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC---C--CCeEEEEcCcHHHHHHHHHHhcccccc----ccceeeechhhhhhhhhhhhhccccccccc
Confidence 5566666666642 1 235788889999999999999999998 8887766554332 223333444333222
Q ss_pred Ccc------c----cccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 221 DAK------R----FNKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 221 d~~------~----l~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
+.. . ....+++++.++.-+|.||...+ ++|+++|.++++|.++.-....--.+..+-++++.|..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~ 204 (377)
T d1vjoa_ 125 PWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQ 204 (377)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSS
T ss_pred CCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeeccc
Confidence 111 1 11236678888888899999877 48899999999999987432222224456688899999
Q ss_pred cccCCCCceEEEEEEeCHHHHHHHHHHHh-------------------hccCcCChHHH-HHHHHHHHhhhCCCCCCCCc
Q 012785 286 KSTGHAGTRIGWALVKDMEVAKKMTKYIE-------------------LNTIGVSKDSQ-LRAAKVLKVVSDSCKPSGSE 345 (456)
Q Consensus 286 K~~g~~G~RiG~l~~~~~~~~~~l~~~~~-------------------~~~~~~s~~~q-~~a~~~L~~~~~~~~~~~~~ 345 (456)
|.++.|+ -+|.++.. +...+....... ..+.+.+.... ..+..+.....
T Consensus 205 K~~~gp~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 273 (377)
T d1vjoa_ 205 KGLGCSP-GASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA--------- 273 (377)
T ss_dssp STTCSCS-SCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH---------
T ss_pred ccccCCC-EEEEecch-hhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhh---------
Confidence 9775332 36777775 766665432211 11222222222 22223222111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHH-HHHhCCEEeec
Q 012785 346 DECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCES-FLKGNKILTRS 422 (456)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~-~l~~~gI~v~p 422 (456)
+.-.+...++.+++.+.+.+.+...+.. ...+.... + ...+.+.+++ +.+.+.. ++.++||.+..
T Consensus 274 -~~g~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~r---------s-~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~ 341 (377)
T d1vjoa_ 274 -QEGLANCWQRHQKNVEYLWERLEDIGLS-LHVEKEYR---------L-PTLTTVCIPDGVDGKAVARRLLNEHNIEVGG 341 (377)
T ss_dssp -HHCHHHHHHHHHHHHHHHHHHHHHTTCC-BSSCGGGB---------C-SSEEEEECCTTCCHHHHHHHHHHHHCEECEE
T ss_pred -hcCchHHHHHHHHHhhhhhhhhhccCce-eecChHhc---------C-CeEEEEECCCCCCHHHHHHHHHhcCCEEEec
Confidence 2345667777888888889988876532 22221111 1 1134455543 4556655 45788999998
Q ss_pred CCCCCCCCCeEEEE-ec--CChhHHHHHHHHHHhhhC
Q 012785 423 GKHFGFSPKYVRIS-ML--DRDENYNLFVQRLSKILS 456 (456)
Q Consensus 423 g~~fg~~~~~iRis-~~--~~~e~i~~~l~~L~~~l~ 456 (456)
|...- .++.|||| +. .++|++++++++|+++|+
T Consensus 342 G~~~~-~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 342 GLGEL-AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp CCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred Ccccc-cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 87542 36789999 44 368899999999999885
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.48 E-value=2.4e-12 Score=125.57 Aligned_cols=273 Identities=13% Similarity=0.078 Sum_probs=174.8
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..++++.+|++++. .+.+.++.++.|+.+++++| .++|| +|+++..+|......+...|.+++..+.
T Consensus 36 v~~fE~~~a~~~g~--------~~~v~~~SGt~Al~lal~~l~~~~gd----eVi~p~~t~~a~~~ai~~~g~~p~~~d~ 103 (384)
T d1b9ha_ 36 VNSFEREFAAHHGA--------AHALAVTNGTHALELALQVMGVGPGT----EVIVPAFTFISSSQAAQRLGAVTVPVDV 103 (384)
T ss_dssp HHHHHHHHHHHTTC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCTHHHHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHCc--------CeEEEeCCHHHHHHHHHHHcCCCCCC----EEEEeccccccccccccccccccccccc
Confidence 47899999999963 47889999999999999998 68999 9999999999999999999999876654
Q ss_pred Cc-------ccccc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecC
Q 012785 221 DA-------KRFNK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTV 284 (456)
Q Consensus 221 d~-------~~l~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~ 284 (456)
|. +.++. .++++|++.+. .|.... ++|+++++++|+|.++.-. .+.........++.+.||
T Consensus 104 ~~~~~~~d~~~~~~~i~~~tk~i~~~~~---~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf 180 (384)
T d1b9ha_ 104 DAATYNLDPEAVAAAVTPRTKVIMPVHM---AGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSF 180 (384)
T ss_dssp CTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEEC
T ss_pred cccccccchhhhcccccccccccccccc---cccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecc
Confidence 43 33322 35677765444 344322 4899999999999998732 122111111234555555
Q ss_pred --ccccCCCCceEEEEEEeCHHHHHHHHHHHhhc-----------------cCcCChHHHHHHHHHHHhhhCCCCCCCCc
Q 012785 285 --SKSTGHAGTRIGWALVKDMEVAKKMTKYIELN-----------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSE 345 (456)
Q Consensus 285 --SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~-----------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~ 345 (456)
+|.++ .-.-|.+++.|+++.+.++..+... .+..+.+....+..-|+
T Consensus 181 ~~~K~i~--~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~------------ 246 (384)
T d1b9ha_ 181 QNGKLMT--AGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA------------ 246 (384)
T ss_dssp CTTSSSC--SSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT------------
T ss_pred ccccccc--ccccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhh------------
Confidence 78765 3347899998899999888776421 12234443333333333
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC--CcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEE
Q 012785 346 DECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP--SQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKIL 419 (456)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~ 419 (456)
.+++..+.-+++.+.+.+.|++++.+...... ..... ..+..+.++. ..+.+.+.|+++||.
T Consensus 247 ---~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~ 314 (384)
T d1b9ha_ 247 ---RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNS---------HYMAMFRIPGLTEERRNALVDRLVEAGLP 314 (384)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCC---------CSEEEEECTTCCHHHHHHHHHHHHHTTCC
T ss_pred ---hcccchhhhhhhhhhhhhhhhcccccccccccccccccc---------cccccceecccccccHHHHHHHHHHCCCC
Confidence 23444444556667778888877544322111 11000 0122333332 245688899999998
Q ss_pred eecCCC----------CCC------------------CCCeEEEEecC--C-hhHHHHHHHHHHhhh
Q 012785 420 TRSGKH----------FGF------------------SPKYVRISMLD--R-DENYNLFVQRLSKIL 455 (456)
Q Consensus 420 v~pg~~----------fg~------------------~~~~iRis~~~--~-~e~i~~~l~~L~~~l 455 (456)
+++... ++. ..+.|.|.+.. + +++++..++.|++++
T Consensus 315 ~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l 381 (384)
T d1b9ha_ 315 AFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAV 381 (384)
T ss_dssp EEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred eeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHH
Confidence 876421 110 01357777543 5 568999999999876
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.48 E-value=5.1e-14 Score=140.76 Aligned_cols=274 Identities=14% Similarity=0.092 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-------------------------CCCCCCcEEEEe
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-------------------------QDASEPISVVSA 197 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-------------------------~gd~~~~~Vlv~ 197 (456)
.++.+.+++.+...- ....+++++++++++|++.+++.... ++.. ..+|+..
T Consensus 99 ~~~a~~lae~l~~~~--~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ii~~ 175 (461)
T d1ohwa_ 99 ENFVEKLRESLLSVA--PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCP-DYSILSF 175 (461)
T ss_dssp TTHHHHHHHTGGGGC--CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSC-CCEEEEE
T ss_pred HHHHHHHHHHHHhhh--ccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCC-CceEEEe
Confidence 456666777653211 11246899999999999999886531 1110 1179999
Q ss_pred CCCCCChhhhhhhcCCe--------------Eeee-----cc-------------Cccccc---------cCCCeEEEEc
Q 012785 198 APYYSSYPSITDCVKSR--------------LYKW-----AG-------------DAKRFN---------KDGPYIELVT 236 (456)
Q Consensus 198 ~P~y~~~~~~~~~~g~~--------------~~~~-----~~-------------d~~~l~---------~~~~~~i~v~ 236 (456)
.-+|++....+...... ..++ +. +.+.++ ..+..++++.
T Consensus 176 ~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivE 255 (461)
T d1ohwa_ 176 MGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVE 255 (461)
T ss_dssp TTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeec
Confidence 99999976655543211 1110 00 001111 1245567775
Q ss_pred CCCCCCcccch---------HHhhhcCcEEEeeecCCCCCCCCCCCCC-------CCcEEEecCccccCCCCceEEEEEE
Q 012785 237 SPNNPDGSVRQ---------SVVNRSGGILVHDLAYYWPQYTSITYPA-------DHDLMLFTVSKSTGHAGTRIGWALV 300 (456)
Q Consensus 237 ~P~NPtG~~~~---------~l~~~~~~~iI~De~y~~~~~~~~~~~~-------~~~i~i~S~SK~~g~~G~RiG~l~~ 300 (456)
.-+...|...+ ++|+++|+++|.||++.+...++-.... ..+|+ +++|.++ . |+...
T Consensus 256 Pi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv--~~gK~l~-~----g~~~~ 328 (461)
T d1ohwa_ 256 PIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMM-T----GGFFH 328 (461)
T ss_dssp SSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEE--EECGGGS-S----EEEEE
T ss_pred cccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhh--hhhhccc-c----ccccc
Confidence 55665666543 3899999999999999976555432111 23444 6899886 3 45444
Q ss_pred eCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC-CccccCC
Q 012785 301 KDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSG-LFSVPEL 379 (456)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~ 379 (456)
. .. ...........+++.++++..++.+.|+.+.+. +.+++..+.-+..++.+.+...+.+ .+.-.+.
T Consensus 329 ~-~~-~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~---------~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG 397 (461)
T d1ohwa_ 329 K-EE-FRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRE---------DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG 397 (461)
T ss_dssp C-GG-GSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred c-cc-cccccccccccccccccccchhhcccchhhhhh---------hHHHHHHHHHHHHHHHHHHHHhhCCCceEEeee
Confidence 3 32 222222344568899999999999999977543 3334333333333344444444443 2322333
Q ss_pred CCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEE--ecCChhHHHHHHHHHHhhh
Q 012785 380 PSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRIS--MLDRDENYNLFVQRLSKIL 455 (456)
Q Consensus 380 ~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis--~~~~~e~i~~~l~~L~~~l 455 (456)
.|. ++-+++++ ..+.+...+.++||++.+. +++.||+. +..+++++++++++|.++|
T Consensus 398 ~Gl--------------~~~ie~~~~~~~~~i~~~~~~~Gll~~~~-----~~~~ir~~PpL~it~~eid~~~~~l~~~l 458 (461)
T d1ohwa_ 398 RGT--------------FCSFDTPDESIRNKLISIARNKGVMLGGC-----GDKSIRFRPTLVFRDHHAHLFLNIFSDIL 458 (461)
T ss_dssp ETT--------------EEEEECSSHHHHHHHHHHHHHTTEECEEE-----TTTEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred eeE--------------EEEEEcCCHHHHHHHHHHHHHCCeEEeeC-----CCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 443 45567754 3456788888999999873 36788987 4459999999999999987
Q ss_pred C
Q 012785 456 S 456 (456)
Q Consensus 456 ~ 456 (456)
+
T Consensus 459 ~ 459 (461)
T d1ohwa_ 459 A 459 (461)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.46 E-value=4.2e-13 Score=134.50 Aligned_cols=283 Identities=11% Similarity=0.091 Sum_probs=164.7
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCC----CCCcEEEEeCCCCCChh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDA----SEPISVVSAAPYYSSYP 205 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd----~~~~~Vlv~~P~y~~~~ 205 (456)
.|....+ ..+|++.++++++ .+++++++++++|...++++++++++ .++ .++...+.+..+.
T Consensus 70 ~y~~~~~-----~~~le~~~a~l~g--------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~-~~i~~~~h~~t~~ 135 (465)
T d1ax4a_ 70 AYAGSRN-----YYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKN-PVFISNFHFDTTA 135 (465)
T ss_dssp CSSSCHH-----HHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSS-CEEEESSCCHHHH
T ss_pred hhccChH-----HHHHHHHHHHHHC--------CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCC-eEEeccchhhhhH
Confidence 5776666 3799999999985 36899999999999999999976553 111 3555555444455
Q ss_pred hhhhhcCCeEeeec----------------cCcccccc-------CCCeEEEEcCCCCCCccc-ch--------HHhhhc
Q 012785 206 SITDCVKSRLYKWA----------------GDAKRFNK-------DGPYIELVTSPNNPDGSV-RQ--------SVVNRS 253 (456)
Q Consensus 206 ~~~~~~g~~~~~~~----------------~d~~~l~~-------~~~~~i~v~~P~NPtG~~-~~--------~l~~~~ 253 (456)
......|...+... +|.+.++. +.+.+++++.+||..|.. ++ ++|+++
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~ 215 (465)
T d1ax4a_ 136 AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 215 (465)
T ss_dssp HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHc
Confidence 55666677765321 24344432 134566666667766543 33 389999
Q ss_pred CcEEEeeecCCCC----------CCCCC--C----C-CCCCcEEEecCccccCCCCceEEEEEEeCH-HHHHHHHHHHh-
Q 012785 254 GGILVHDLAYYWP----------QYTSI--T----Y-PADHDLMLFTVSKSTGHAGTRIGWALVKDM-EVAKKMTKYIE- 314 (456)
Q Consensus 254 ~~~iI~De~y~~~----------~~~~~--~----~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~-~~~~~l~~~~~- 314 (456)
|+++|.|+++... ..... . . ..-.+++..|.+|. ..+.+.|+++.++. .+.........
T Consensus 216 g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~--~~~~~~g~l~~~~~~~~~~~~~~~~~~ 293 (465)
T d1ax4a_ 216 GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKD--PLLNIGGLVAIRDNEEIFTLARQRCVP 293 (465)
T ss_dssp TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTST--TCCSSCEEEEESSCHHHHHHHHHHHHH
T ss_pred CCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccC--cccccceeEeecchHHHHHhhhccccc
Confidence 9999999998621 11000 0 0 00123555566665 45666899988632 33333322211
Q ss_pred ---hc-cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccccccc
Q 012785 315 ---LN-TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRA 390 (456)
Q Consensus 315 ---~~-~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~ 390 (456)
.. ..+.+.....++...+.. . ..+...++..++.+++.+.|++.+ +.+..+.++.
T Consensus 294 ~~~~~~~~~~~~~~~~a~~~~~~e---~----------~~~~~~~~~~~~~~~l~~~L~~~g-~~~v~~~~~~------- 352 (465)
T d1ax4a_ 294 MEGFVTYGGLAGRDMAAMVQGLEE---G----------TEEEYLHYRIGQVKYLGDRLREAG-IPIQYPTGGH------- 352 (465)
T ss_dssp HTCSTTTTTCCHHHHHHHHHHHHH---T----------TCHHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSS-------
T ss_pred cccCCCcchhhHHHHHHHhhhhHH---h----------hhHHHHHHHHHHHHHHHHHHHhhc-CccccCCCcc-------
Confidence 11 222333333333333331 1 112233344456677888888875 4455555555
Q ss_pred CCCCCceEEeecC-------c----cHHHHHHHHHhCCEEeecCCC------------CCCCCCeEEEEec---CChhHH
Q 012785 391 FEPQPAFAWLKCE-------Q----EIEDCESFLKGNKILTRSGKH------------FGFSPKYVRISML---DRDENY 444 (456)
Q Consensus 391 ~~~~~~f~~~~~~-------~----~~~~~~~~l~~~gI~v~pg~~------------fg~~~~~iRis~~---~~~e~i 444 (456)
++.+... . .......++.+.||...+... .....+.+|+++. .|+|++
T Consensus 353 ------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eei 426 (465)
T d1ax4a_ 353 ------AVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHM 426 (465)
T ss_dssp ------EEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHH
T ss_pred ------eeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHH
Confidence 3333221 1 234567778889997654221 1123568999864 289999
Q ss_pred HHHHHHHHhhh
Q 012785 445 NLFVQRLSKIL 455 (456)
Q Consensus 445 ~~~l~~L~~~l 455 (456)
+.+++.|++++
T Consensus 427 D~vv~~l~~v~ 437 (465)
T d1ax4a_ 427 DYIADALIGLK 437 (465)
T ss_dssp HHHHHHHHTTH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=1.5e-11 Score=118.05 Aligned_cols=262 Identities=13% Similarity=0.080 Sum_probs=168.4
Q ss_pred CCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeeccC------ccccccCCCeEE
Q 012785 162 ENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWAGD------AKRFNKDGPYIE 233 (456)
Q Consensus 162 ~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~~d------~~~l~~~~~~~i 233 (456)
+.+.++++.|++.+++.++..+..+|+ +|++..-.+.+ +...++..|.++.....+ .+.....+++.+
T Consensus 49 ~~~~i~~~gsgT~a~e~~~~nl~~~g~----~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 124 (348)
T d1iuga_ 49 EGEVLILTGSGTLAMEALVKNLFAPGE----RVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGL 124 (348)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEE
T ss_pred CCCEEEEeCchHHHHHHHHHhcccccc----cceeecchHHHHHHHHHHHhcCcccccccccCCCccccccccccCCCee
Confidence 346788999999999999999999998 88877666433 344566677766544332 223333467788
Q ss_pred EEcCCCCCCcccch-----HHhhhc--CcEEEeeecCCCCCCCCCC-CCCCCcEEEecCcccc-CCCCceEEEEEEeCHH
Q 012785 234 LVTSPNNPDGSVRQ-----SVVNRS--GGILVHDLAYYWPQYTSIT-YPADHDLMLFTVSKST-GHAGTRIGWALVKDME 304 (456)
Q Consensus 234 ~v~~P~NPtG~~~~-----~l~~~~--~~~iI~De~y~~~~~~~~~-~~~~~~i~i~S~SK~~-g~~G~RiG~l~~~~~~ 304 (456)
+++...+.||...+ ++|+++ +.++++|.+..-.. .++. +..+-++++.|--|.+ |.|| +|+++++ ++
T Consensus 125 ~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~-~~i~~d~~~iD~~~~~sqK~l~gppG--~~~v~~s-~~ 200 (348)
T d1iuga_ 125 LLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV-GEVALEAMGVDAAASGSQKGLMCPPG--LGFVALS-PR 200 (348)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT-BCCCSGGGTCSEEEEESSSTTCCCSC--EEEEEEC-HH
T ss_pred EEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccc-cccccccccCCEEEeccccceecCCc--eeeeeec-hH
Confidence 88888888999877 367665 57888998766321 1222 2334689999999998 8888 6999996 77
Q ss_pred HHHHHHH-------------HH-hhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 012785 305 VAKKMTK-------------YI-ELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQK 370 (456)
Q Consensus 305 ~~~~l~~-------------~~-~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 370 (456)
..++++. .. ....+.++....++..++|+.+.+ + ..+..+..+.+++.+++.++.
T Consensus 201 ~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~ 269 (348)
T d1iuga_ 201 ALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP----------R-LEEHLALKAWQNALLYGVGEE 269 (348)
T ss_dssp HHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG----------G-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHH----------H-HhHHHHHHHHHHHHHhhhhhh
Confidence 6664321 11 112344555556666677764322 1 223333334444555555555
Q ss_pred cCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHH
Q 012785 371 SGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNL 446 (456)
Q Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~ 446 (456)
.+ +.... .. . + ....-+.+|+ +.+.+...|+++||.+.+|..- .....+||+.-. +.++++.
T Consensus 270 ~g-l~~~~-~~-~---------s-~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~-l~~~~~RIg~mG~~~~~d~~~ 335 (348)
T d1iuga_ 270 GG-LRPVP-KR-F---------S-PAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGP-LKGKVFRLSLMGAYDRYEALG 335 (348)
T ss_dssp TT-CEESC-SS-B---------C-TTCEEEECCTTCCHHHHHHHHHTTTEECEECCGG-GTTTEEEECCCSSCCHHHHHH
T ss_pred hh-hccCh-hh-c---------C-CeEEEEECCCCCCHHHHHHHHHHCCeEEEcCccc-cCCCEEEEeCCCCCCHHHHHH
Confidence 44 33221 10 0 1 1134556654 5678889999999999987532 235689998432 8889999
Q ss_pred HHHHHHhhhC
Q 012785 447 FVQRLSKILS 456 (456)
Q Consensus 447 ~l~~L~~~l~ 456 (456)
+++.|+++|+
T Consensus 336 ~~~~l~~~l~ 345 (348)
T d1iuga_ 336 VAGMFREVLE 345 (348)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.43 E-value=1.1e-11 Score=120.24 Aligned_cols=277 Identities=14% Similarity=0.069 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeeccC
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAGD 221 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d 221 (456)
..|++.++++++. .+.+.++++|.|+.++++++ .++|| +|+++.-+|+.....+..+|++++.+++|
T Consensus 24 ~~fE~~~~~~~~~--------~~~~~~~SgT~Al~lal~~l~~~~gd----eVi~p~~t~~a~~~~~~~~g~~pv~~Di~ 91 (374)
T d1o69a_ 24 NRFEQSVKDYSKS--------ENALALNSATAALHLALRVAGVKQDD----IVLASSFTFIASVAPICYLKAKPVFIDCD 91 (374)
T ss_dssp HHHHHHHHHHHCC--------SEEEEESCHHHHHHHHHHHTTCCTTC----EEEEESSSCGGGTHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHCc--------CeEEEeCCHHHHHHHHHHHcCCCCcC----EEEeCCcchHhhHHHHhhccceeEecccc
Confidence 7899999999863 58999999999999999998 77899 99999999999999999999999988776
Q ss_pred cccc------------ccCCCeEEEEcCC-CCCCccc-chHHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecCc-
Q 012785 222 AKRF------------NKDGPYIELVTSP-NNPDGSV-RQSVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTVS- 285 (456)
Q Consensus 222 ~~~l------------~~~~~~~i~v~~P-~NPtG~~-~~~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~S- 285 (456)
.+.. ...+++++++.+. .+|.... +-++|++++++||+|-++.-. .+.......-.++.++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~ 171 (374)
T d1o69a_ 92 ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNG 171 (374)
T ss_dssp TTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred cccccccccccccchhcccccccccccccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccC
Confidence 3311 1125678777655 3333221 235899999999999988732 2222222223467777775
Q ss_pred -cccCCCCceEEEEEEeCHHHHHHHHHHHhhc--------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHH
Q 012785 286 -KSTGHAGTRIGWALVKDMEVAKKMTKYIELN--------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFF 350 (456)
Q Consensus 286 -K~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~--------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l 350 (456)
|.++..| -|.+++.+++++++++..+... .+..+.+....+..-|+ .+
T Consensus 172 ~K~l~tge--GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~---------------~l 234 (374)
T d1o69a_ 172 NKIITTSG--GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME---------------VL 234 (374)
T ss_dssp TSSSCCSS--CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT---------------TH
T ss_pred cccccccc--ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHh---------------hh
Confidence 8776333 5899998999999988775321 12344444444444333 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEee---------------------cCccHHHH
Q 012785 351 EFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLK---------------------CEQEIEDC 409 (456)
Q Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~---------------------~~~~~~~~ 409 (456)
+...++-++.++.+.+.|.+.... ...+...-.++ .-.++.+. .....+.+
T Consensus 235 ~~~i~~r~~i~~~y~~~L~~~~~~-~~~~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l 306 (374)
T d1o69a_ 235 EQRVLKKREIYEWYKEFLGEYFSF-LDELENSRSNR-------WLSTALINFDKNELNACQKDINISQKNITLHPKISKL 306 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTEEC-CCCCTTEECCC-------SSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHH
T ss_pred hhhcchhHHHHHHHHhhccccccc-cccccCCCCCh-------hheeeeeccccccccccccccccchhhccchhhHHHH
Confidence 223333344455666777654211 11111111000 00012211 11135678
Q ss_pred HHHHHhCCEEeecCCC-------CCC------------CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 410 ESFLKGNKILTRSGKH-------FGF------------SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 410 ~~~l~~~gI~v~pg~~-------fg~------------~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
.+.|+++||.+++... |.. ....+.|.+.. ++++++..++.|.++++
T Consensus 307 ~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 307 IEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp HHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence 8999999999887431 100 01245555433 89999999999999875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=1e-11 Score=123.48 Aligned_cols=280 Identities=11% Similarity=-0.009 Sum_probs=168.0
Q ss_pred HHHHHHHHHH-HHhcCccCCCceEEEccCHHH-HHHHHHHHh---cCCCCCCCcEEEEeCCCCCChhhhhhhcCCeEeee
Q 012785 144 EFAKEVVRLH-KVVGNAITENHHIVVGTGSTQ-LFQAALYAL---SSQDASEPISVVSAAPYYSSYPSITDCVKSRLYKW 218 (456)
Q Consensus 144 ~lr~aia~~~-~~~g~~~~~~~~I~~t~G~~~-al~~~~~~l---~~~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~ 218 (456)
.+...+.+++ ...|.... ...++|+|+++ ++.+++.++ ..+++ .|+++...++.....+..+|++.+.+
T Consensus 94 ~le~~~~~~~~~l~g~~~~--~~~~~~~~~t~~~~~~~l~a~~~~~~~~~----~vi~~~~~H~s~~~a~~~~g~~~~~v 167 (445)
T d3bc8a1 94 KITNSLVLNVIKLAGVHSV--ASCFVVPMATGMSLTLCFLTLRHKRPKAK----YIIWPRIDQKSCFKSMVTAGFEPVVI 167 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTC--CEEEEESSCHHHHHHHHHHHHHHHCTTCC----EEEEECCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcc--cCccccccchHHHHHHHHHHHHHhCCCCC----EEEEcCcccHHHHHHHHHcCCeeEEE
Confidence 4666666665 44565543 34555555554 454445444 34455 89999999999999999999987654
Q ss_pred c---------cCcccccc-------CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCC-C----CCCC
Q 012785 219 A---------GDAKRFNK-------DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQ-Y----TSIT 272 (456)
Q Consensus 219 ~---------~d~~~l~~-------~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~-~----~~~~ 272 (456)
. +|.+.++. .++.+|+++.|+|++|.+.+ ++|+++|+++++|++|.... + ....
T Consensus 168 ~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 247 (445)
T d3bc8a1 168 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 247 (445)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred EeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhc
Confidence 3 45554432 24678889999999999865 48999999999999998421 1 0000
Q ss_pred -CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHH
Q 012785 273 -YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFE 351 (456)
Q Consensus 273 -~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~ 351 (456)
...+-+++..|.+|.++.| .-.|+++..++.+.+.+.........+.+...+.+....+. .+-..
T Consensus 248 ~~~~~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------~~~~~ 313 (445)
T d3bc8a1 248 ARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG-------------CSGYR 313 (445)
T ss_dssp HHHSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH-------------HHHHH
T ss_pred cCcCCcceEEecCccccccC-CCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh-------------hhcch
Confidence 1123468899999988633 34678888778877777655433333333344444333332 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCccccCCCCcccccccccCCCCCceEEeecC-------ccHHHHHHHHHhCCEEe
Q 012785 352 FTNHQMSTRWKQLRMAVQKS----GLFSVPELPSQFCTFLGRAFEPQPAFAWLKCE-------QEIEDCESFLKGNKILT 420 (456)
Q Consensus 352 ~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~~~l~~~gI~v 420 (456)
...+...++.+++.+.|.++ +......+.... ..++.+. .+...+...|.+.||..
T Consensus 314 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~-------------~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~ 380 (445)
T d3bc8a1 314 KLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPI-------------SLAMTLKTIDGHHDKAVTQLGSMLFTRQVSG 380 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSS-------------EEEEECTTTSSSSSCHHHHHHHHHHHTTCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCc-------------ceEEEeeeccccCCCCHHHHHHHHHHcCCCc
Confidence 44444455555555555543 221111111111 2333331 13455666777888742
Q ss_pred ec----CC----------CCCC-----CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 421 RS----GK----------HFGF-----SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 421 ~p----g~----------~fg~-----~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
.. +. .|+. ...++|++++. ++||++.++++|+++++
T Consensus 381 ~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk 437 (445)
T d3bc8a1 381 ARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN 437 (445)
T ss_dssp CEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHH
Confidence 21 11 1221 24579998764 88999999999998863
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.42 E-value=1.9e-11 Score=119.01 Aligned_cols=281 Identities=11% Similarity=0.060 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChh--hhhhhcCCeEeeecc
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYP--SITDCVKSRLYKWAG 220 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~--~~~~~~g~~~~~~~~ 220 (456)
.+.|+.++++++. .+.+.|+++.|+|.+++.++..+..+++ +|++..-...... ...+..+.....+..
T Consensus 53 ~~~r~~L~~ll~~-----~~~~~i~~~gsgT~a~ea~~~~l~~~~~----~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (388)
T d2ch1a1 53 DEVKDGLRYIFQT-----ENRATMCVSGSAHAGMEAMLSNLLEEGD----RVLIAVNGIWAERAVEMSERYGADVRTIEG 123 (388)
T ss_dssp HHHHHHHHHHHTC-----CCSCEEEESSCHHHHHHHHHHHHCCTTC----EEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCC-----CCCeEEEEcCcHHHHHHHHHHHhccccc----cccccccccccccchhhhhhhccccccccc
Confidence 4455555555542 1234577788999999999999999998 8877765554333 345555666654433
Q ss_pred Cc------ccc----ccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCc
Q 012785 221 DA------KRF----NKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVS 285 (456)
Q Consensus 221 d~------~~l----~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~S 285 (456)
+. +.. ...+++++.++.-+|.||...+ ++|++++.++++|.+..-.+..--....+-++++.|--
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~ 203 (388)
T d2ch1a1 124 PPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQ 203 (388)
T ss_dssp CTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC
T ss_pred ccccccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEccc
Confidence 21 111 1236788888888999999977 47899999999999988543222224456678888888
Q ss_pred ccc-CCCCceEEEEEEeCHHHHHHHHHHHh-----------------------hccCcCChHHHHHHHHHHHhhhCCCCC
Q 012785 286 KST-GHAGTRIGWALVKDMEVAKKMTKYIE-----------------------LNTIGVSKDSQLRAAKVLKVVSDSCKP 341 (456)
Q Consensus 286 K~~-g~~G~RiG~l~~~~~~~~~~l~~~~~-----------------------~~~~~~s~~~q~~a~~~L~~~~~~~~~ 341 (456)
|.+ |.+| +|.++.. +...+.+..... .....++......+...++.+..
T Consensus 204 K~~~gp~G--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~---- 276 (388)
T d2ch1a1 204 KVLGAPPG--ITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAE---- 276 (388)
T ss_dssp -CCCCCSS--CEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHH----
T ss_pred cccCCCCe--EEEEecc-HHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHH----
Confidence 977 4455 6777775 776665543110 01122333333334444442211
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHH-HhCCE
Q 012785 342 SGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFL-KGNKI 418 (456)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l-~~~gI 418 (456)
.-........++........+...+.... .+.... .....+-+.+++ +.+++...| +++||
T Consensus 277 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------rs~~v~~~~~p~g~~~~~l~~~l~~~~gI 340 (388)
T d2ch1a1 277 ------EGLENQIKRRIECAQILYEGLGKMGLDIF-VKDPRH---------RLPTVTGIMIPKGVDWWKVSQYAMNNFSL 340 (388)
T ss_dssp ------HCHHHHHHHHHHHHHHHHHHHHHHTCCBS-SCSGGG---------BCTTEEEEECCTTCCHHHHHHHHHHHHCB
T ss_pred ------hhhHHHHHHHHHHHHHHHhhhhhcccccc-cCCHHH---------hCCeEEEEECCCCCCHHHHHHHHhhcCCE
Confidence 12233333444444445555554432221 111111 111234556653 455665555 66799
Q ss_pred EeecCCCCCCCCCeEEEE-ecC--ChhHHHHHHHHHHhhhC
Q 012785 419 LTRSGKHFGFSPKYVRIS-MLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 419 ~v~pg~~fg~~~~~iRis-~~~--~~e~i~~~l~~L~~~l~ 456 (456)
.+.+|.+.- ..+.|||| ++. +.|+++.+++.|+++|+
T Consensus 341 ~v~~G~~~~-~~~~~RIs~~g~~~t~edI~~ll~alke~L~ 380 (388)
T d2ch1a1 341 EVQGGLGPT-FGKAWRVGIMGECSTVQKIQFYLYGFKESLK 380 (388)
T ss_dssp CCBCCCGGG-TTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred EEeCCCccc-cCCEEEEcCCcCCCCHHHHHHHHHHHHHHHH
Confidence 999987532 36689999 653 68999999999999874
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.41 E-value=1.7e-11 Score=122.43 Aligned_cols=287 Identities=13% Similarity=0.063 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhc-CCeE--eee
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCV-KSRL--YKW 218 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~~--~~~ 218 (456)
..++++.+|++++. ++-+++++|++.++.+++.+++++|| +|+++.-++.........+ +... ...
T Consensus 68 i~eae~~~A~~~ga-------~~a~f~~~Gtt~~n~a~i~a~~~~gd----~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~ 136 (462)
T d1c4ka2 68 AVAAEKHAARVYNA-------DKTYFVLGGSSNANNTVTSALVSNGD----LVLFDRNNHKSVYNSALAMAGGRPVYLQT 136 (462)
T ss_dssp HHHHHHHHHHHTTC-------SEEEEESSHHHHHHHHHHHHHCCTTC----EEEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred HHHHHHHHHHHhCC-------CeEEEECCchHHHHHHHHHHhcCCCC----eEEecccchHHHHHHHHHHhcCCceeeec
Confidence 47889999999874 34566678888888888999999999 9999999988766544433 3332 222
Q ss_pred ccCccc---------c-----------------ccCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-
Q 012785 219 AGDAKR---------F-----------------NKDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP- 266 (456)
Q Consensus 219 ~~d~~~---------l-----------------~~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~- 266 (456)
+.|..+ + ...++..+++...+|-+|.+.+ ++|+++|+++++|+++...
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~ 216 (462)
T d1c4ka2 137 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 216 (462)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred ccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccc
Confidence 222111 1 0112333333344456898765 4799999999999999741
Q ss_pred CCCC-----CC--C-----CCCCcEEEecCccccCCCCceEEEEEEeCHHH--------HHHHHHHHhh-ccCcCChHHH
Q 012785 267 QYTS-----IT--Y-----PADHDLMLFTVSKSTGHAGTRIGWALVKDMEV--------AKKMTKYIEL-NTIGVSKDSQ 325 (456)
Q Consensus 267 ~~~~-----~~--~-----~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~--------~~~l~~~~~~-~~~~~s~~~q 325 (456)
.+.+ .. . ..+.++++.|++|++|.++- -+++...+..+ .+.+++.... .+.+++....
T Consensus 217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~-g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~ 295 (462)
T d1c4ka2 217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ-TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMY 295 (462)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTT-CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHH
T ss_pred cccCcCCcchhhccccccccCCccEEEEecCcccccccc-eEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHH
Confidence 1111 00 0 11237999999999974432 23444442221 1233333222 2334444333
Q ss_pred HHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC------------------------
Q 012785 326 LRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS------------------------ 381 (456)
Q Consensus 326 ~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g------------------------ 381 (456)
..+..+...+ . ....++..++..++.+.+++.+.+...........
T Consensus 296 asl~~a~~~~-~---------~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 365 (462)
T d1c4ka2 296 AALDVNAAMQ-E---------GEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRF 365 (462)
T ss_dssp HHHHHHHHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBC
T ss_pred HHHHHHHHHH-H---------hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhcc
Confidence 3333333221 1 23344555666666777777777654321110000
Q ss_pred --cccccccccCCCC-----CceEEeecCc-------------cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--
Q 012785 382 --QFCTFLGRAFEPQ-----PAFAWLKCEQ-------------EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD-- 439 (456)
Q Consensus 382 --~~~~~~~~~~~~~-----~~f~~~~~~~-------------~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~-- 439 (456)
+............ +.=+.+..+. ....+.+.|+++||.+-- .+.+.||++++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~-----~~~~~i~~~~s~~~ 440 (462)
T d1c4ka2 366 EKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK-----SDLNSILFLMTPAE 440 (462)
T ss_dssp CTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE-----ECSSEEEEECCTTC
T ss_pred CCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeec-----cCCCeEEEEecCCC
Confidence 0000000000000 0002232221 356788889999986532 247789999875
Q ss_pred ChhHHHHHHHHHHhhh
Q 012785 440 RDENYNLFVQRLSKIL 455 (456)
Q Consensus 440 ~~e~i~~~l~~L~~~l 455 (456)
++++++.+++.|+++-
T Consensus 441 T~edid~li~aL~ei~ 456 (462)
T d1c4ka2 441 TPAKMNNLITQLLQLQ 456 (462)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999998863
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.40 E-value=5.8e-11 Score=115.05 Aligned_cols=276 Identities=10% Similarity=0.021 Sum_probs=176.4
Q ss_pred CHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcC-CCCCCCcEEEEeCCCCCChhhhhhhcCCeEeeecc
Q 012785 142 EPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSS-QDASEPISVVSAAPYYSSYPSITDCVKSRLYKWAG 220 (456)
Q Consensus 142 ~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~-~gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 220 (456)
..+|++.++++++. ++++.+++++.|+.++++++.. +||.+ +|+++.-+|+.....+...|++++.++.
T Consensus 33 v~~fE~~~~~~~g~--------k~ai~~~Sgt~Al~~al~al~~~~~~~~--eVi~p~~t~~a~~~ai~~~G~~pv~vDi 102 (371)
T d2fnua1 33 SLLFEEALCEFLGV--------KHALVFNSATSALLTLYRNFSEFSADRN--EIITTPISFVATANMLLESGYTPVFAGI 102 (371)
T ss_dssp HHHHHHHHHHHHTC--------SEEEEESCHHHHHHHHHHHSSCCCTTSC--EEEECSSSCTHHHHHHHHTTCEEEECCB
T ss_pred HHHHHHHHHHHHCc--------CeEEEEecHHHHHHHHHHHhcccCCCCC--eeecccccccccceeeeccCcccccccc
Confidence 37899999999974 5888999999999999999843 33311 7999999999999999999999988776
Q ss_pred Ccccc------cc---CCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCC-CCCCCCCCCCCcEEEecC-
Q 012785 221 DAKRF------NK---DGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWP-QYTSITYPADHDLMLFTV- 284 (456)
Q Consensus 221 d~~~l------~~---~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~-~~~~~~~~~~~~i~i~S~- 284 (456)
|.+.. +. .++++|++++. -|...+ ++|+++++++|+|.++... .+.........++.+.||
T Consensus 103 ~~~~~~~~~~~~~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~ 179 (371)
T d2fnua1 103 KNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFH 179 (371)
T ss_dssp CTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred cccccccchhhhhhccchhhccccccc---cccccccccccccccccchhhccchhhccCceeccccCCccccccccccc
Confidence 65432 11 26677776543 344322 4899999999999988742 222222222345666666
Q ss_pred -ccccCCCCceEEEEEEeCHHHHHHHHHHHhhc----------------cCcCChHHHHHHHHHHHhhhCCCCCCCCcch
Q 012785 285 -SKSTGHAGTRIGWALVKDMEVAKKMTKYIELN----------------TIGVSKDSQLRAAKVLKVVSDSCKPSGSEDE 347 (456)
Q Consensus 285 -SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~~----------------~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~ 347 (456)
+|.++ .|- -|.+++.++++.++++..+... .+..+.+....+..-|+
T Consensus 180 ~~K~l~-~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~-------------- 243 (371)
T d2fnua1 180 AIKPIT-TAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK-------------- 243 (371)
T ss_dssp TTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHT--------------
T ss_pred cccccc-ccc-ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhh--------------
Confidence 78876 333 7999998899999998875422 12244444333333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-CcccccccccCCCCCceEEeecCc----cHHHHHHHHHhCCEEeec
Q 012785 348 CFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELP-SQFCTFLGRAFEPQPAFAWLKCEQ----EIEDCESFLKGNKILTRS 422 (456)
Q Consensus 348 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~l~~~gI~v~p 422 (456)
.++...++-++..+.+.+.|++.+.+....+. +...++ - ...+.++. ..+.+.+.|+++||.+++
T Consensus 244 -~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~--------~-~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~ 313 (371)
T d2fnua1 244 -KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSN--------H-LYPILMHQKFFTCKKLILESLHKRGILAQV 313 (371)
T ss_dssp -THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCC--------S-CEEEEECGGGGGGHHHHHHHHHHTTEECBC
T ss_pred -hccchhhhhhhhhhhhccccccccccccccccccccccc--------c-cccccccccchhHHHHHHHHHHHCCCCcce
Confidence 23333333444555667778776654443321 111110 0 12222322 346788899999999876
Q ss_pred CCC-------C----CCC---------CCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 423 GKH-------F----GFS---------PKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 423 g~~-------f----g~~---------~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
... | ... .+.+.|.+.. ++++++..++.|+++++
T Consensus 314 ~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~ 369 (371)
T d2fnua1 314 HYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 369 (371)
T ss_dssp CCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred eCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHH
Confidence 421 1 111 1356665443 88999999999988763
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.21 E-value=8.9e-09 Score=97.98 Aligned_cols=255 Identities=15% Similarity=0.116 Sum_probs=173.8
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh-----hcCCeEeeeccCccc-------cc----cCCCeE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD-----CVKSRLYKWAGDAKR-------FN----KDGPYI 232 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~d~~~-------l~----~~~~~~ 232 (456)
..++++|...++.+|++||| +|+..++...++...-. ....+.+.++.|.+. ++ ..+|++
T Consensus 91 p~SGs~An~av~~all~pGD----~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPkl 166 (405)
T d1kl1a_ 91 PHSGAQANMAVYFTVLEHGD----TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKL 166 (405)
T ss_dssp CSSHHHHHHHHHHHHCCTTC----EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSE
T ss_pred ccCchHHHHHHHHHhcCCCC----EEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcce
Confidence 44556788889999999999 99999988877654322 223556666655432 22 238999
Q ss_pred EEEcCCCCCCcccch---HHhhhcCcEEEeeecCCC------CCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCH
Q 012785 233 ELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW------PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDM 303 (456)
Q Consensus 233 i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~------~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~ 303 (456)
|++..-.+|--.-+. ++|++.|.+++.|-++.- ....|+ +.-+++..|..|+| +|=|-|.++.. +
T Consensus 167 Ii~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~---~~aDvvt~tThKtl--rGPrgg~I~~~-~ 240 (405)
T d1kl1a_ 167 IVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV---PYAHFVTTTTHKTL--RGPRGGMILCQ-E 240 (405)
T ss_dssp EEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST---TTCSEEEEESSSTT--CCCSCEEEEEC-H
T ss_pred EEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh---hhhhheeccccccc--cCCCCceEEec-c
Confidence 998766666655555 489999999999999861 222333 22478899999987 56688999985 8
Q ss_pred HHHHHHHHHHhhccCcCChHHHHHHHH-HHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCc
Q 012785 304 EVAKKMTKYIELNTIGVSKDSQLRAAK-VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQ 382 (456)
Q Consensus 304 ~~~~~l~~~~~~~~~~~s~~~q~~a~~-~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 382 (456)
++.+++.+.......+.+...+.++.+ .+... ....++...+++.++.+.|.+.|.+.+ +.+.. |+
T Consensus 241 ~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea----------~~~~fk~Ya~qvv~NAkaLa~~L~~~G-~~vv~--gg 307 (405)
T d1kl1a_ 241 QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA----------LQDDFKAYAKRVVDNAKRLASALQNEG-FTLVS--GG 307 (405)
T ss_dssp HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH----------HSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGG--GS
T ss_pred hhHHHHHhhhCcccccCcchhHHHHHHHHHHHH----------hChHHHHHHHHHHHHHHHHHHHHhcCC-ceeec--CC
Confidence 899888887655555555555544432 22211 123456677788899999999999876 44432 21
Q ss_pred ccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCC-CCCCeEEEEec------CChhHHHHHH
Q 012785 383 FCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFG-FSPKYVRISML------DRDENYNLFV 448 (456)
Q Consensus 383 ~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg-~~~~~iRis~~------~~~e~i~~~l 448 (456)
.+...+|+++.. +...+.+.|++.||.+. |++.=. ..+..|||... ..+++++++.
T Consensus 308 ----------Td~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia 377 (405)
T d1kl1a_ 308 ----------TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIA 377 (405)
T ss_dssp ----------CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred ----------CccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHH
Confidence 122257888843 57778889999999886 432111 13568999953 2788999999
Q ss_pred HHHHhhhC
Q 012785 449 QRLSKILS 456 (456)
Q Consensus 449 ~~L~~~l~ 456 (456)
+.|.++++
T Consensus 378 ~~I~~~l~ 385 (405)
T d1kl1a_ 378 AIIGLVLK 385 (405)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887763
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.6e-08 Score=96.72 Aligned_cols=255 Identities=15% Similarity=0.093 Sum_probs=171.9
Q ss_pred ccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhhc-----CCeEeeeccC------cccccc----CCCeEE
Q 012785 169 GTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDCV-----KSRLYKWAGD------AKRFNK----DGPYIE 233 (456)
Q Consensus 169 t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~~-----g~~~~~~~~d------~~~l~~----~~~~~i 233 (456)
..++++|...++.+|++||| +|+..++...++...-... ..+.+.++.| .+.+++ .++++|
T Consensus 94 p~SGs~AN~av~~All~pGD----~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklI 169 (416)
T d1dfoa_ 94 PHSGSQANFAVYTALLEPGD----TVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMI 169 (416)
T ss_dssp CSSHHHHHHHHHHHHCCTTC----EEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEE
T ss_pred cccCccHHHHHHHHhcCCCC----eeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceE
Confidence 45666888899999999999 9999999888866543222 2345555544 333322 388999
Q ss_pred EEcCCCCCCcccch---HHhhhcCcEEEeeecCCC------CCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEe--C
Q 012785 234 LVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYYW------PQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVK--D 302 (456)
Q Consensus 234 ~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~~------~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~--~ 302 (456)
+...-.+|-=.-+. ++|++.|.+++.|.++.- ....|++. -+++.+|..|+| +|=|-|.++.+ +
T Consensus 170 i~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~---aDvvt~tThKtl--rGPrggiI~~~~~~ 244 (416)
T d1dfoa_ 170 IGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH---AHVVTTTTHKTL--AGPRGGLILAKGGS 244 (416)
T ss_dssp EEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT---SSEEEEESSSTT--CCCSCEEEEESSCC
T ss_pred EecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc---cceeeeehhhcc--cCCCceEEEeccch
Confidence 88655555433333 489999999999999862 22233422 369999999987 56688999985 3
Q ss_pred HHHHHHHHHHHhhccCcCChHHHHHHH-HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCC
Q 012785 303 MEVAKKMTKYIELNTIGVSKDSQLRAA-KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPS 381 (456)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~s~~~q~~a~-~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g 381 (456)
+++.+++.+.......+.+...+.++. ..+... ....++...+++.++.+.|.+.|.+.+ +.+.. |
T Consensus 245 ~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea----------~~~~fk~Y~~qvv~NA~~La~~L~~~G-~~iv~--g 311 (416)
T d1dfoa_ 245 EELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA----------MEPEFKTYQQQVAKNAKAMVEVFLERG-YKVVS--G 311 (416)
T ss_dssp HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT----------TSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGG--G
T ss_pred HhHHHHHHhhhCcccccCccHHHHHHHHHHHHHH----------cCHHHHHHHHHHHHHHHHHHHHHHhCC-ccccc--C
Confidence 688888877765555555555555432 223311 123456677888899999999999886 44432 1
Q ss_pred cccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEeecC-CCCC----CCCCeEEEEec------CChhHHHHH
Q 012785 382 QFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTRSG-KHFG----FSPKYVRISML------DRDENYNLF 447 (456)
Q Consensus 382 ~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~pg-~~fg----~~~~~iRis~~------~~~e~i~~~ 447 (456)
+ .+...+++++.. +...+...|.+.||.+.-- -.+. ..+..|||+.. ..+++++++
T Consensus 312 g----------TdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~i 381 (416)
T d1dfoa_ 312 G----------TDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKEL 381 (416)
T ss_dssp S----------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred C----------CCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHH
Confidence 1 112257888843 5688999999999998531 1221 13568999954 278899999
Q ss_pred HHHHHhhh
Q 012785 448 VQRLSKIL 455 (456)
Q Consensus 448 l~~L~~~l 455 (456)
.+.|.+++
T Consensus 382 A~~I~~~l 389 (416)
T d1dfoa_ 382 AGWMCDVL 389 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=9.9e-10 Score=108.68 Aligned_cols=288 Identities=11% Similarity=-0.033 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHH-hcCccCCCc--eEEEccCHHHHHHHHHHHhcC---------CCCCCCcEEEEeCCCCCChhhhhhh
Q 012785 143 PEFAKEVVRLHKV-VGNAITENH--HIVVGTGSTQLFQAALYALSS---------QDASEPISVVSAAPYYSSYPSITDC 210 (456)
Q Consensus 143 ~~lr~aia~~~~~-~g~~~~~~~--~I~~t~G~~~al~~~~~~l~~---------~gd~~~~~Vlv~~P~y~~~~~~~~~ 210 (456)
.++++.+.+++.. .|.+..... .=.+|+|+++++.+++.+... ..+..+ .+++....+......++.
T Consensus 92 ~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~-~~~~~~~~H~s~~Kaa~~ 170 (450)
T d1pmma_ 92 AAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDK-PNLVCGPVQICWHKFARY 170 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSC-CEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCC-ceEEecccHHHHHHHHHH
Confidence 5788878777743 454432111 247899999999988876532 011111 577777888889999999
Q ss_pred cCCeEeeeccCcc-------cccc---CCCeEEEEcCCCCCCcccch-----H------HhhhcCcEEEeeecCCCCCC-
Q 012785 211 VKSRLYKWAGDAK-------RFNK---DGPYIELVTSPNNPDGSVRQ-----S------VVNRSGGILVHDLAYYWPQY- 268 (456)
Q Consensus 211 ~g~~~~~~~~d~~-------~l~~---~~~~~i~v~~P~NPtG~~~~-----~------l~~~~~~~iI~De~y~~~~~- 268 (456)
+|+++..++.|.+ .++. .++.+|+.+.++|.||.+-+ + +++++|+++.+|-+|.+...
T Consensus 171 ~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p 250 (450)
T d1pmma_ 171 WDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAP 250 (450)
T ss_dssp TTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred cCCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceee
Confidence 9999887665543 3322 36678888889999999855 2 35679999999999986311
Q ss_pred -----CCC-CCCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHH------h--hccCcCCh-----HHHHHHH
Q 012785 269 -----TSI-TYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYI------E--LNTIGVSK-----DSQLRAA 329 (456)
Q Consensus 269 -----~~~-~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~------~--~~~~~~s~-----~~q~~a~ 329 (456)
... .....-+-+..|..|.++ ...-+||++..+++......... . ..+...+. ..+.+..
T Consensus 251 ~~~~~~~~~~~~~~aDSi~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l 329 (450)
T d1pmma_ 251 FVAPDIVWDFRLPRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEF 329 (450)
T ss_dssp HHCTTCCCSTTSTTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHH
T ss_pred eechhhhhhhcccceeEeecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHH
Confidence 111 122234677899999665 44558999998654322111000 0 01111221 1222222
Q ss_pred HHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc-----
Q 012785 330 KVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ----- 404 (456)
Q Consensus 330 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~----- 404 (456)
..+. .+-+++..++..+..+++.+.|++.+.+++..+.... +..+-+.+++++
T Consensus 330 ~~~G-------------~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~---------~~l~~V~Fr~~~~~~~~ 387 (450)
T d1pmma_ 330 LRLG-------------REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD---------EGIPAVCFKLKDGEDPG 387 (450)
T ss_dssp HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTT---------TBSSEEEEEECTTCCCS
T ss_pred hhhh-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCC---------CceEEEEEecCCcccCC
Confidence 2222 4567778888889999999999998876664321100 001123344421
Q ss_pred -cHHHHHHHHHhCCEEeecCCCCC---CCCCeEEEEecC--ChhHHHHHHHHHHhhh
Q 012785 405 -EIEDCESFLKGNKILTRSGKHFG---FSPKYVRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 405 -~~~~~~~~l~~~gI~v~pg~~fg---~~~~~iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+..++...|+++|..|.. ..+. .....+|+.+.. +++.++++++.|++++
T Consensus 388 ~~~~~l~~~L~~~Gw~v~~-~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v 443 (450)
T d1pmma_ 388 YTLYDLSERLRLRGWQVPA-FTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASL 443 (450)
T ss_dssp SCHHHHHHHHHTTTCBCCE-EECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCeeec-cCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 356788999999976643 2121 134579999864 7888999999988875
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=9.6e-11 Score=117.06 Aligned_cols=285 Identities=13% Similarity=0.065 Sum_probs=162.7
Q ss_pred cccCCCCcccCCCHHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhcCCCCC-----CCcEEEEeCCCCCCh
Q 012785 130 YFSDVRNLCWFLEPEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALSSQDAS-----EPISVVSAAPYYSSY 204 (456)
Q Consensus 130 ~y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~-----~~~~Vlv~~P~y~~~ 204 (456)
.|....+ ..+|++.++++++. +.+++++++++|+.+++.+++++++. ....+......|...
T Consensus 69 ~Y~~~~~-----~~~le~~~a~l~G~--------~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 135 (467)
T d2v1pa1 69 AFSGSRS-----YYALAESVKNIFGY--------QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135 (467)
T ss_dssp CSSSCHH-----HHHHHHHHHHHTCC--------SEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred hhcCCch-----HHHHHHHHHHHHCC--------CEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEeccccccc
Confidence 4665555 37999999999863 57888899999999999999876640 000233444444444
Q ss_pred hhhhhhcCCeEeeecc----------------Ccccccc-------CCCeEEEEcCCCCCCcc-cch--------HHhhh
Q 012785 205 PSITDCVKSRLYKWAG----------------DAKRFNK-------DGPYIELVTSPNNPDGS-VRQ--------SVVNR 252 (456)
Q Consensus 205 ~~~~~~~g~~~~~~~~----------------d~~~l~~-------~~~~~i~v~~P~NPtG~-~~~--------~l~~~ 252 (456)
.......|..+..++. |.+.++. ..+.++++.+.+|..|. +++ ++|++
T Consensus 136 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 4556667877764432 2333322 23567778788876654 433 48999
Q ss_pred cCcEEEeeecCCCC----------CCCC--CC-----CCCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHHHHhh
Q 012785 253 SGGILVHDLAYYWP----------QYTS--IT-----YPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTKYIEL 315 (456)
Q Consensus 253 ~~~~iI~De~y~~~----------~~~~--~~-----~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~~~~~ 315 (456)
||+++|.|+++.+. .+.. +. .....+++.+|.+|.++. -..|+++..++.+....+..+..
T Consensus 216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~--~~gg~i~~~~~~~~~~~~~~~~~ 293 (467)
T d2v1pa1 216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV--PMGGLLCMKDDSFFDVYTECRTL 293 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCC--SSCEEEEECSGGGHHHHHHHHHH
T ss_pred cCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCC--CCceeEEecchhhhhHHHhhccc
Confidence 99999999997521 1111 10 012345777788887653 34677777654444443332211
Q ss_pred --------ccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccc
Q 012785 316 --------NTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFL 387 (456)
Q Consensus 316 --------~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~ 387 (456)
...+.+.....++...+... . .+++ .++..++.+.+.+.|.+.+. .+.++.+.. .
T Consensus 294 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~--------~~~~----~~~~~~~~~~l~~~L~~~~~-~v~~~~~~~-~-- 356 (467)
T d2v1pa1 294 CVVQEGFPTYGGLEGGAMERLAVGLYDG-M--------NLDW----LAYRIAQVQYLVDGLEEIGV-VCQQAGGHA-A-- 356 (467)
T ss_dssp HHHTTSSCCCCCCCHHHHHHHHHHHHHT-T--------CHHH----HHHHHHHHHHHHHHHHHTTC-CEEEECSSC-E--
T ss_pred ccccccCcchhhhHHHHHHHHHHHhHHh-h--------hHHH----HHHHHHHHHHHHHHHHhcCC-cccCCCccc-e--
Confidence 11233333444444434321 1 1233 33344566778888887653 222221111 0
Q ss_pred cccCCCCCceEEee--cC---c----cHHHHHHHHHhCCEEeecCCCC------------CCCCCeEEEEecC---ChhH
Q 012785 388 GRAFEPQPAFAWLK--CE---Q----EIEDCESFLKGNKILTRSGKHF------------GFSPKYVRISMLD---RDEN 443 (456)
Q Consensus 388 ~~~~~~~~~f~~~~--~~---~----~~~~~~~~l~~~gI~v~pg~~f------------g~~~~~iRis~~~---~~e~ 443 (456)
++-.. ++ . .......++.+.||.......+ ....+.+|+++.. ++|+
T Consensus 357 ---------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~ee 427 (467)
T d2v1pa1 357 ---------FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTH 427 (467)
T ss_dssp ---------EEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHH
T ss_pred ---------eecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHH
Confidence 11110 11 1 2344667778899965432211 1135689998753 8899
Q ss_pred HHHHHHHHHhhh
Q 012785 444 YNLFVQRLSKIL 455 (456)
Q Consensus 444 i~~~l~~L~~~l 455 (456)
|+.++++|++++
T Consensus 428 iD~vv~~l~~v~ 439 (467)
T d2v1pa1 428 MDFIIEAFKHVK 439 (467)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.05 E-value=1.6e-07 Score=91.03 Aligned_cols=256 Identities=11% Similarity=0.105 Sum_probs=171.0
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhhh----------cCCeEeeeccCcc-------cccc---
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITDC----------VKSRLYKWAGDAK-------RFNK--- 227 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~~----------~g~~~~~~~~d~~-------~l~~--- 227 (456)
-..++++|..+++.+|++||| +|+..++...++..--.. ...+.+.+++|.+ .+++
T Consensus 102 qp~SGs~An~av~~all~pgD----~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~ 177 (470)
T d1rv3a_ 102 QPYSGSPANFAVYTALVEPHG----RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENAR 177 (470)
T ss_dssp CCSSHHHHHHHHHHHHTCTTC----EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred cccCCccHHHHHHHHhcCCCC----eEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHH
Confidence 455667888899999999999 999998776665543211 1234455555443 3322
Q ss_pred -CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCC------CCCCCCCCCCCCCcEEEecCccccCCCCceEEE
Q 012785 228 -DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYY------WPQYTSITYPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~------~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
.+|++|+...-.+|-=.-+. ++|++.|.+++.|-++. +....|+. .-+|+.+|..|+| +|=|-|.
T Consensus 178 ~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~---~aDvvt~tTHKtl--rGPrgGi 252 (470)
T d1rv3a_ 178 LFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE---HCHVVTTTTHKTL--RGCRAGM 252 (470)
T ss_dssp HHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---TCSEEEEESSGGG--CCCSCEE
T ss_pred hhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh---eeeeeeeehhhhc--cCCcceE
Confidence 38999998665665544444 48999999999999986 22233442 2379999999997 5667799
Q ss_pred EEEeCH--------------HHHHHHHHHHhhccCcCChHHHHHHHH-HHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 298 ALVKDM--------------EVAKKMTKYIELNTIGVSKDSQLRAAK-VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 298 l~~~~~--------------~~~~~l~~~~~~~~~~~s~~~q~~a~~-~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
++..++ ++.+++.+.......|.+...+.++.+ .+.... ....+...+++.++.+
T Consensus 253 I~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~----------~~~fk~Ya~qvv~NAk 322 (470)
T d1rv3a_ 253 IFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM----------TPEFKEYQRQVVANCR 322 (470)
T ss_dssp EEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT----------SHHHHHHHHHHHHHHH
T ss_pred EEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhc----------ChHHHHHHHHHHHHHH
Confidence 988632 477888777654455555555555443 233111 2345667788888999
Q ss_pred HHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCCCCCCeEEE
Q 012785 363 QLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFGFSPKYVRI 435 (456)
Q Consensus 363 ~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg~~~~~iRi 435 (456)
.|.+.|.+.+ +.+.. |+ .+...+++++.. +...+.+.|++.||.+. |++.-...+..|||
T Consensus 323 ~La~~L~~~G-~~v~~--gg----------TdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRi 389 (470)
T d1rv3a_ 323 ALSAALVELG-YKIVT--GG----------SDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRL 389 (470)
T ss_dssp HHHHHHHHTT-CEEGG--GS----------CSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEE
T ss_pred HHHHHHHhCC-ceecc--CC----------CCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEe
Confidence 9999999876 44432 11 112257777743 57789999999999875 44432224678999
Q ss_pred Eec------CChhHHHHHHHHHHhhh
Q 012785 436 SML------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~------~~~e~i~~~l~~L~~~l 455 (456)
... ..+++++++.+.|.+++
T Consensus 390 GT~alTtrG~~e~dm~~iA~~I~~~l 415 (470)
T d1rv3a_ 390 GTPALTSRGLLEKDFQKVAHFIHRGI 415 (470)
T ss_dssp ECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 953 27889888888877665
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.04 E-value=7.9e-09 Score=99.06 Aligned_cols=260 Identities=10% Similarity=0.010 Sum_probs=142.5
Q ss_pred CceEEEccCHHHHH-HHHHHHhcCCCCCCCcEEEEeCC-CCC-ChhhhhhhcCCeEeeeccCc------cccccC--CCe
Q 012785 163 NHHIVVGTGSTQLF-QAALYALSSQDASEPISVVSAAP-YYS-SYPSITDCVKSRLYKWAGDA------KRFNKD--GPY 231 (456)
Q Consensus 163 ~~~I~~t~G~~~al-~~~~~~l~~~gd~~~~~Vlv~~P-~y~-~~~~~~~~~g~~~~~~~~d~------~~l~~~--~~~ 231 (456)
+..|++++|++.+. .+++..+..+++ ++++..- .|. .+...++..|..+.....+. +.++.. ...
T Consensus 66 ~~~i~~~~gs~t~~~ea~~~~l~~~~~----~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (361)
T d2c0ra1 66 GYKVLFIQGGASTQFAMIPMNFLKEGQ----TANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN 141 (361)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT
T ss_pred CCEEEEECCCchHHHHHHHhccccCCC----ceEEEeechhhhhhhhhhhhcCceeeeeccccccccchhhhhhhcccCc
Confidence 34788877776554 666667777777 6665432 222 24455666787776544332 222221 222
Q ss_pred EEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccccCCCCceEEEEEEeCHHHH
Q 012785 232 IELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKSTGHAGTRIGWALVKDMEVA 306 (456)
Q Consensus 232 ~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~ 306 (456)
...+ +|.||...+ ++|+++|+++++|.+.+-.+ .++ +..+-++.+.|.+|.++++|.-.+++.. +.+.
T Consensus 142 ~~~v---~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~-~~i-d~~~~di~~~s~~k~~~~~~~~~~~~~~--~~~~ 214 (361)
T d2c0ra1 142 AAYL---HLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILS-RPF-DLNQFGLVYAGAQKNLGPSGVTVVIVRE--DLVA 214 (361)
T ss_dssp EEEE---EEESEETTTTEECSSCCCCTTSCEEEECTTTTTS-SCC-CGGGCSEEEEETTTTTCCSSCEEEEEEG--GGSS
T ss_pred ceEE---EEecccceecceEEEeeccCCceEEEEeeccccc-ccc-ccccceeEEEecccccccccCcEEEEEh--HHhh
Confidence 3333 466777766 38899999999999987533 222 2223467778899999988743333322 2211
Q ss_pred H------------HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012785 307 K------------KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLF 374 (456)
Q Consensus 307 ~------------~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 374 (456)
+ ....... .....++.....+...+..... .........+.++++..+..........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (361)
T d2c0ra1 215 ESPKHLPTMLRYDTYVKNNS-LYNTPPSFGIYMVNEVLKWIEE---------RGGLEGVQQANRKKASLIYDAIDQSGGF 284 (361)
T ss_dssp SCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHH---------TTHHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred hCcccccccccccccccccc-ccccccceeeehhhhHHHhhhh---------ccchHHHHHHHHHHHHHhhhhhhhcccc
Confidence 1 1111111 1122222222222222221111 2233445555556666666665554322
Q ss_pred cccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeEEEEecC--ChhHHHHHHHH
Q 012785 375 SVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYVRISMLD--RDENYNLFVQR 450 (456)
Q Consensus 375 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~iRis~~~--~~e~i~~~l~~ 450 (456)
......... .+. .-+.+.+++ +.+.+...|+++||.+++|... -+.|||++-. +.|+++++++.
T Consensus 285 ~~~~~~~~~--------rS~-~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~---~g~~RIs~~~~~~~edv~~Lv~~ 352 (361)
T d2c0ra1 285 YRGCVDVDS--------RSD-MNITFRLASEELEKEFVKASEQEGFVGLKGHRS---VGGLRASIYNAVPYESCEALVQF 352 (361)
T ss_dssp SEESSCGGG--------BCS-SEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT---TCSEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCChhh--------ccc-eEEEEECCCcccHHHHHHHHHHCCCEEecCCCc---CCeEEEEecCCCCHHHHHHHHHH
Confidence 111111110 111 124455554 4577889999999999998432 1239999765 89999999999
Q ss_pred HHhhh
Q 012785 451 LSKIL 455 (456)
Q Consensus 451 L~~~l 455 (456)
|+++.
T Consensus 353 l~~~~ 357 (361)
T d2c0ra1 353 MEHFK 357 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.1e-08 Score=97.46 Aligned_cols=277 Identities=10% Similarity=-0.078 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~ 219 (456)
.+.|+.|+++++. .++..|++++|++++...+.... ..+++ .+++..-.+.. .....+..|...+...
T Consensus 49 ~~~r~~l~~l~~~-----~~~~~v~~~~gs~t~~~~a~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (360)
T d1bjna_ 49 EEAEKDFRDLLNV-----PSNYKVLFCHGGGRGQFAAVPLNILGDKT----TADYVDAGYWAASAIKEAKKYCTPNVFDA 119 (360)
T ss_dssp HHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHHCTTCC----EEEEEESSHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHhCC-----CCCCEEEEECCchHHHHhhhhhccccccc----ccceecccchhhhhHHHHhhcCccceeec
Confidence 4455556666643 12457888888887766665544 45555 66665544433 2333444455444222
Q ss_pred cC------c---cccccCCCeEEEEcCCCCCCcccchH---HhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCccc
Q 012785 220 GD------A---KRFNKDGPYIELVTSPNNPDGSVRQS---VVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSKS 287 (456)
Q Consensus 220 ~d------~---~~l~~~~~~~i~v~~P~NPtG~~~~~---l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK~ 287 (456)
.+ . +.....+++++.+...+|-||...+. .+..+++.++.|-+..-.. .++ +..+-++.+.|.+|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i~~~~~~~~v~vDa~~~~~~-~~v-d~~~~dv~~~ss~k~ 197 (360)
T d1bjna_ 120 KVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTILS-RPI-DVSRYGVIYAGAQKN 197 (360)
T ss_dssp EEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCCCCCCTTCCEEEECTTTTTS-SCC-CGGGCSEEEEETTTT
T ss_pred cccCCCcchhhhhhhhccCCceeEEEecccccccCccccceecccccceeeeeeeccccc-eee-eeccceeEEEEcccc
Confidence 11 1 11122355666666678888887663 4556889999997665321 112 223457899999999
Q ss_pred cCCCCceEEEEEEeCHHHHH------------HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHH
Q 012785 288 TGHAGTRIGWALVKDMEVAK------------KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNH 355 (456)
Q Consensus 288 ~g~~G~RiG~l~~~~~~~~~------------~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~ 355 (456)
++.|+.-.++ +.. +...+ ....... ............+......... ....+...+
T Consensus 198 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 265 (360)
T d1bjna_ 198 IGPAGLTIVI-VRE-DLLGKANIACPSILDYSILNDNGS-MFNTPPTFAWYLSGLVFKWLKA---------NGGVAEMDK 265 (360)
T ss_dssp TSSTTCEEEE-EEG-GGCSCCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHH---------TTHHHHHHH
T ss_pred cccCCCceeE-eee-hhhhhccccCCcchhhHHHHhhhh-hccccccchHHHHHHHHHHHhh---------hhhHHHHHH
Confidence 9866544433 333 21111 1111111 1222222222222222221111 223445555
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCeE
Q 012785 356 QMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKYV 433 (456)
Q Consensus 356 ~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~i 433 (456)
+.++....+.+.+............... +.+ -+-+.+++ +.+.+...|+++||.++.|... -+.|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r---------s~~-v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~---~g~~ 332 (360)
T d1bjna_ 266 INQQKAELLYGVIDNSDFYRNDVAKRNR---------SRM-NVPFQLADSALDKLFLEESFAAGLHALKGHRV---VGGM 332 (360)
T ss_dssp HHHHHHHHHHHHHHHCSSEECCBCGGGB---------CSS-EEEEEESSGGGHHHHHHHHHHTTEECCBCCTT---TCSE
T ss_pred HHHHHHHHHHHhhhccccccccCCcccc---------cce-EEEEEcCCcccHHHHHHHHHHCCCEeecCCCc---cCeE
Confidence 5555666666666655433333222211 122 24445553 4677888999999999987422 2349
Q ss_pred EEEecC--ChhHHHHHHHHHHhhh
Q 012785 434 RISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 434 Ris~~~--~~e~i~~~l~~L~~~l 455 (456)
|||+.. ++|+++++++.|+++.
T Consensus 333 Ris~~~~~t~edV~~li~~l~e~~ 356 (360)
T d1bjna_ 333 RASIYNAMPLEGVKALTDFMVEFE 356 (360)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHHH
Confidence 999864 8999999999999874
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.93 E-value=2e-07 Score=90.05 Aligned_cols=256 Identities=13% Similarity=0.092 Sum_probs=158.6
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhhhh--------hcC--CeEeeecc-------Ccccccc---
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSITD--------CVK--SRLYKWAG-------DAKRFNK--- 227 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~~~--------~~g--~~~~~~~~-------d~~~l~~--- 227 (456)
-..++++|..+++.+|++||| +|+..++...++..--. ..| .+.+.+.. |.+.+++
T Consensus 98 qp~SGs~An~av~~all~pgD----~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~ 173 (463)
T d2a7va1 98 QPYSGSPANLAVYTALLQPHD----RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTAR 173 (463)
T ss_dssp CCSSHHHHHHHHHHHHCCSCE----ECCC-------------------------------CCBCTTTCSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHcCCCc----eEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHh
Confidence 344556888889999999999 99988877666542221 111 12333433 3333322
Q ss_pred -CCCeEEEEcCCCCCCcccch---HHhhhcCcEEEeeecCC------CCCCCCCCCCCCCcEEEecCccccCCCCceEEE
Q 012785 228 -DGPYIELVTSPNNPDGSVRQ---SVVNRSGGILVHDLAYY------WPQYTSITYPADHDLMLFTVSKSTGHAGTRIGW 297 (456)
Q Consensus 228 -~~~~~i~v~~P~NPtG~~~~---~l~~~~~~~iI~De~y~------~~~~~~~~~~~~~~i~i~S~SK~~g~~G~RiG~ 297 (456)
.+|++|++..-.+|--.-+. ++|++.|.+++.|-++. +....|++ .-+|+.+|..|+| +|=|-|.
T Consensus 174 ~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~---~aDvvt~tTHKTl--rGPrgGi 248 (463)
T d2a7va1 174 LFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK---HADIVTTTTHKTL--RGARSGL 248 (463)
T ss_dssp HHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGG--CSCSCEE
T ss_pred hcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh---hhhhhhchhhhhh--cCCCceE
Confidence 38999998766666655555 48999999999999986 22223342 2368999999997 6678899
Q ss_pred EEEeCH--------------HHHHHHHHHHhhccCcCChHHHHHHHH-HHHhhhCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012785 298 ALVKDM--------------EVAKKMTKYIELNTIGVSKDSQLRAAK-VLKVVSDSCKPSGSEDECFFEFTNHQMSTRWK 362 (456)
Q Consensus 298 l~~~~~--------------~~~~~l~~~~~~~~~~~s~~~q~~a~~-~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (456)
+++.++ ++.+++.+.......+.+...+.++.+ .+... .+...+...+++.++.+
T Consensus 249 Il~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea----------~~~~fk~Ya~qVv~NAk 318 (463)
T d2a7va1 249 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA----------CTPMFREYSLQVLKNAR 318 (463)
T ss_dssp EEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH----------HSHHHHHHHHHHHHHHH
T ss_pred EEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHh----------cCchHHHHHHHHHHHHH
Confidence 998632 677788777654455555555554433 22211 12345667777888899
Q ss_pred HHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc---cHHHHHHHHHhCCEEee----cCCCCCCCCCeEEE
Q 012785 363 QLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ---EIEDCESFLKGNKILTR----SGKHFGFSPKYVRI 435 (456)
Q Consensus 363 ~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~l~~~gI~v~----pg~~fg~~~~~iRi 435 (456)
.|.+.|.+.+ +.+.. |+ .+...+++++.. +...+.+.|++.||.+. |++.-...+..|||
T Consensus 319 ~La~~L~~~G-~~vv~--gg----------TdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRi 385 (463)
T d2a7va1 319 AMADALLERG-YSLVS--GG----------TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRL 385 (463)
T ss_dssp HHHHHHHHTT-CEEGG--GS----------CSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEE
T ss_pred HHHHHHHhCC-Ceeec--CC----------CCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEe
Confidence 9999999876 34432 11 111257888843 67889999999999885 33321224668999
Q ss_pred Eec------CChhHHHHHHHHHHhhh
Q 012785 436 SML------DRDENYNLFVQRLSKIL 455 (456)
Q Consensus 436 s~~------~~~e~i~~~l~~L~~~l 455 (456)
... ..+++++++.+.|.+++
T Consensus 386 GT~a~TtrG~~e~dm~~iA~~I~~~l 411 (463)
T d2a7va1 386 GAPALTSRQFREDDFRRVVDFIDEGV 411 (463)
T ss_dssp ESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 954 27788888888877654
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.85 E-value=1.1e-07 Score=94.28 Aligned_cols=284 Identities=11% Similarity=0.003 Sum_probs=177.4
Q ss_pred HHHHHHHHHHH-HHhcCccC------CCceEEEccCHHHHHHHHHHHhcCC----------CC-----CCCcEEEEeCCC
Q 012785 143 PEFAKEVVRLH-KVVGNAIT------ENHHIVVGTGSTQLFQAALYALSSQ----------DA-----SEPISVVSAAPY 200 (456)
Q Consensus 143 ~~lr~aia~~~-~~~g~~~~------~~~~I~~t~G~~~al~~~~~~l~~~----------gd-----~~~~~Vlv~~P~ 200 (456)
.++++.+.+|+ +..|.+.. ....-++|+|+++++..++.+.... |- ..+..|++++-+
T Consensus 112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~ 191 (476)
T d1js3a_ 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (476)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence 67888888888 45666531 1235679999999988887654321 10 001258888888
Q ss_pred CCChhhhhhhcCCeEeeeccCc------cccccC---------CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEee
Q 012785 201 YSSYPSITDCVKSRLYKWAGDA------KRFNKD---------GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHD 260 (456)
Q Consensus 201 y~~~~~~~~~~g~~~~~~~~d~------~~l~~~---------~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~D 260 (456)
+......+..+|..+..++.|. +.|++. .+.+|+.+..++.||.+-+ ++|+++++|+-+|
T Consensus 192 H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVD 271 (476)
T d1js3a_ 192 HSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (476)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEe
Confidence 8899999999999988766543 333321 2456677778999999965 4899999999999
Q ss_pred ecCCCC-----CCCCCCC-CCCCcEEEecCccccCCCCceEEEEEEeCHHHHHHHHH--------HHh---------hcc
Q 012785 261 LAYYWP-----QYTSITY-PADHDLMLFTVSKSTGHAGTRIGWALVKDMEVAKKMTK--------YIE---------LNT 317 (456)
Q Consensus 261 e~y~~~-----~~~~~~~-~~~~~i~i~S~SK~~g~~G~RiG~l~~~~~~~~~~l~~--------~~~---------~~~ 317 (456)
-+|.+. .+..... ...-+-+..++.|.++.| .-.|.++.+++........ ... ..+
T Consensus 272 AA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P-~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (476)
T d1js3a_ 272 AAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQ 350 (476)
T ss_dssp CTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSS
T ss_pred cccchhhhhhcchhhhhcCCcccceeeecCccccccC-CcceeecccchHHHHHHHhcChhhhccccccccccccccccc
Confidence 999862 1122111 122357778899988755 4688888886544321100 000 001
Q ss_pred C----cCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCC
Q 012785 318 I----GVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEP 393 (456)
Q Consensus 318 ~----~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (456)
. ....+...++...+. .+-++++.++.-+..+++.+.|++.+.+++..++.
T Consensus 351 ~~~sr~~~al~lw~~l~~~G-------------~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~------------ 405 (476)
T d1js3a_ 351 LPLGRRFRSLKMWFVFRMYG-------------VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT------------ 405 (476)
T ss_dssp SCSCCCCTHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCC------------
T ss_pred cccchhhHHHHHHHHHHHHh-------------HhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCc------------
Confidence 1 111233334444333 45566777777788889999999988777654432
Q ss_pred CCceEEeecCcc---HHHHHHHHHhCC-EEeecCCCCCCCCCeEEEEecC---ChhHHHHHHHHHHhhh
Q 012785 394 QPAFAWLKCEQE---IEDCESFLKGNK-ILTRSGKHFGFSPKYVRISMLD---RDENYNLFVQRLSKIL 455 (456)
Q Consensus 394 ~~~f~~~~~~~~---~~~~~~~l~~~g-I~v~pg~~fg~~~~~iRis~~~---~~e~i~~~l~~L~~~l 455 (456)
.+-+.+++++. .+.+.+.+.+.| +.+.+.. . .+..++|+++.. ++++++.+++.|+++.
T Consensus 406 -l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~-~-~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a 471 (476)
T d1js3a_ 406 -LGLVCFRLKGSDGLNEALLERINSARKIHLVPCR-L-RGQFVLRFAICSRKVESGHVRLAWEHIRGLA 471 (476)
T ss_dssp -SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE-E-TTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -eEEEEEEccCChHHHHHHHHHHHhcCCEEEeeee-E-CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 12345555432 234555555555 3343311 1 134589999863 6789999999998763
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.81 E-value=1.8e-07 Score=89.04 Aligned_cols=275 Identities=10% Similarity=-0.038 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHh-cCCCCCCCcEEEEeCCCCCC--hhhhhhhcCCeEeeec
Q 012785 143 PEFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYAL-SSQDASEPISVVSAAPYYSS--YPSITDCVKSRLYKWA 219 (456)
Q Consensus 143 ~~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-~~~gd~~~~~Vlv~~P~y~~--~~~~~~~~g~~~~~~~ 219 (456)
.+.|+.|+++++. .++..|++++|++++...+.... ..+++ .+++....+.. +...++..+...+...
T Consensus 51 ~~~r~~l~~l~~~-----~~~~~i~~~~gt~~~~~~~~~~~~~~~~~----~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 121 (360)
T d1w23a_ 51 EQAQNLLRELLQI-----PNDYQILFLQGGASLQFTMLPMNLLTKGT----IGNYVLTGSWSEKALKEAKLLGETHIAAS 121 (360)
T ss_dssp HHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHHCCTTC----EEEEEECSHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHhCC-----CCCCEEEEeCCcHHHHHHHHHhhhcccCc----ccceeeccchhhhhHHHHHHhhhcceeec
Confidence 4566666777653 13447889999988877665555 44555 67666544332 2233333444443322
Q ss_pred cC------ccccccC--CCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCCCCCCcEEEecCcc
Q 012785 220 GD------AKRFNKD--GPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITYPADHDLMLFTVSK 286 (456)
Q Consensus 220 ~d------~~~l~~~--~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~~~~~~i~i~S~SK 286 (456)
.. .+.++.. ......+ .|-||...+ ++|+++|+++|+|-+.+-++.. + +..+-.+.+.+++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~-i-d~~~~~vd~~~~~~ 196 (360)
T d1w23a_ 122 TKANSYQSIPDFSEFQLNENDAYL---HITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRP-L-KVNQFGMIYAGAQK 196 (360)
T ss_dssp CGGGTSCSCCCGGGCCCCTTEEEE---EEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSC-C-CGGGCSEEEEETTT
T ss_pred cccccccchhhhhhccccccccee---EecCCccccceeeeeccccceeeEEeeccccccccc-c-ccccccceEEeecc
Confidence 11 1111111 1222222 345677665 4899999999999998854332 2 12233567778888
Q ss_pred ccCCCCceEEEEEEeCHHHHH------------HHHHHHhhccCcCChHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHH
Q 012785 287 STGHAGTRIGWALVKDMEVAK------------KMTKYIELNTIGVSKDSQLRAAKVLKVVSDSCKPSGSEDECFFEFTN 354 (456)
Q Consensus 287 ~~g~~G~RiG~l~~~~~~~~~------------~l~~~~~~~~~~~s~~~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~ 354 (456)
.++++|. .|+++.. +...+ ..... ..................+....+. .......
T Consensus 197 ~k~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 264 (360)
T d1w23a_ 197 NLGPSGV-TVVIVKK-DLLNTKVEQVPTMLQYATHIKS-DSLYNTPPTFSIYMLRNVLDWIKDL---------GGAEAIA 264 (360)
T ss_dssp TTSCTTC-EEEEEEH-HHHCSCCTTCCGGGCHHHHHHT-TTCSSCCCHHHHHHHHHHHHHHHHT---------THHHHHH
T ss_pred ccccCCc-ceeeEec-hhhhcccccCCcchhhhhhhhh-hhhcccccceeeechhHHHHHHhhh---------hhhHHHH
Confidence 8876663 4454443 32211 11111 1112223333333332222222221 1222333
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCCEEeecCCCCCCCCCe
Q 012785 355 HQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNKILTRSGKHFGFSPKY 432 (456)
Q Consensus 355 ~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~gI~v~pg~~fg~~~~~ 432 (456)
++.+......................... .+. .-+-+.+++ ..+.+...|.++||.++.|...- +.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------rS~-~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~~~~---gg 332 (360)
T d1w23a_ 265 KQNEEKAKIIYDTIDESNGFYVGHAEKGS--------RSL-MNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSV---GG 332 (360)
T ss_dssp HHHHHHHHHHHHHHHTTTTSSEESSCGGG--------BCS-SEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTT---CS
T ss_pred HHHHHHHHHHHHHHhhcccccccCCChhh--------cce-eEEEEEcCCCccHHHHHHHHHHCCCeeeeCCCcc---Cc
Confidence 33333444444444433222211111111 111 124456654 35677788999999999885431 34
Q ss_pred EEEEecC--ChhHHHHHHHHHHhhh
Q 012785 433 VRISMLD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 433 iRis~~~--~~e~i~~~l~~L~~~l 455 (456)
+|+|+.. +.|+++++++.|+++.
T Consensus 333 iRiS~~~~~t~e~V~~Li~~~~~~~ 357 (360)
T d1w23a_ 333 CRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 9999755 8999999999999875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.58 E-value=1.7e-06 Score=83.86 Aligned_cols=256 Identities=14% Similarity=0.122 Sum_probs=153.6
Q ss_pred EccCHHHHHHHHHHHhcCCCCCCCcEEEEeCCCCCChhhh----hhhcCCeEeeeccCccccc----cCCCeEEEEcCCC
Q 012785 168 VGTGSTQLFQAALYALSSQDASEPISVVSAAPYYSSYPSI----TDCVKSRLYKWAGDAKRFN----KDGPYIELVTSPN 239 (456)
Q Consensus 168 ~t~G~~~al~~~~~~l~~~gd~~~~~Vlv~~P~y~~~~~~----~~~~g~~~~~~~~d~~~l~----~~~~~~i~v~~P~ 239 (456)
.-.|++.....++.+....+.. ++++..-.++.+... ++..|.+++.++.|..+.. .+++.++++++||
T Consensus 130 ~~~ga~a~~~~~~~~~~~~~~~---~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~~~~~~~~~Aavmi~~Pn 206 (437)
T d1wyua1 130 MYDGATALAEGVLLALRETGRM---GVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEVGEEVGAVVVQNPN 206 (437)
T ss_dssp BSSHHHHHHHHHHHHHHHHTCC---EEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCCCTTEEEEEEESSC
T ss_pred chHHHHHHHHHHHHHHhhhccc---ccccccccChHHhhhhhhhcccceeeEEeeecccccchhhhhccceeEEEEcccc
Confidence 4567777776666555433322 899998888765544 4556999998876543322 1357889999996
Q ss_pred CCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCC--CCCCCcEEEecCccccCCC----CceEEEEEEeCHHHHHH
Q 012785 240 NPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSIT--YPADHDLMLFTVSKSTGHA----GTRIGWALVKDMEVAKK 308 (456)
Q Consensus 240 NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~--~~~~~~i~i~S~SK~~g~~----G~RiG~l~~~~~~~~~~ 308 (456)
. .|..-. +++++.|.+++.|- .- .....+. ...+-+|++++ +|.||.| |=-.|++.+. +++...
T Consensus 207 t-~G~~ed~~~i~~~~h~~G~l~~~~a-d~-~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~-~~l~r~ 281 (437)
T d1wyua1 207 F-LGALEDLGPFAEAAHGAGALFVAVA-DP-LSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATK-KAFVRQ 281 (437)
T ss_dssp T-TSBCCCHHHHHHHHHHTTCEEEEEC-CT-TGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEEC-GGGGGG
T ss_pred c-cccccchHHHHHHhhhccceEEeee-ch-hhhhccccccccccceEeec-cceeccccCCCcCcccccccc-chhhcc
Confidence 4 576633 26677888776653 21 0111111 12234677777 6665533 1224777775 444322
Q ss_pred H----------------------------HHHHhhccCcCChH-HHHHHHHHHHhhhCCCCCCCCcchhHHHHHHHHHHH
Q 012785 309 M----------------------------TKYIELNTIGVSKD-SQLRAAKVLKVVSDSCKPSGSEDECFFEFTNHQMST 359 (456)
Q Consensus 309 l----------------------------~~~~~~~~~~~s~~-~q~~a~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (456)
+ ++-+..+..+.+.. ...++...+.. -| .+-+++.-+....
T Consensus 282 lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~--lG--------~~GL~~ia~~a~~ 351 (437)
T d1wyua1 282 LPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAA--LG--------PEGLREVALKSVE 351 (437)
T ss_dssp CCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHH--HH--------HHHHHHHHHHHHH
T ss_pred ccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhh--cC--------cccHHHHHHHHHH
Confidence 2 11111122333322 22222332321 12 5667888888889
Q ss_pred HHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCccHHHHHHHHHhCCEEeecCCC-CC-CCCCeEEEEe
Q 012785 360 RWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQEIEDCESFLKGNKILTRSGKH-FG-FSPKYVRISM 437 (456)
Q Consensus 360 ~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~gI~v~pg~~-fg-~~~~~iRis~ 437 (456)
+.+++.+.|.+++++....+. .+ |+ =+.++++.+.+++.+.|.++|+.. |.. |. ..++.+.+++
T Consensus 352 ~A~yl~~~L~~~~g~~~~~~~-~~---f~--------ef~v~~~~~~~~i~k~L~d~G~~~--~~~~~~~~~~~~lli~~ 417 (437)
T d1wyua1 352 MAHKLHALLLEVPGVRPFTPK-PF---FN--------EFALALPKDPEAVRRALAERGFHG--ATPVPREYGENLALFAA 417 (437)
T ss_dssp HHHHHHHHHTTSTTCEECSCS-SB---CS--------EEEEECSSCHHHHHHHHHHTTCCC--CEECCTTSCSSEEEEEC
T ss_pred HHHHHHHHhhhcCCeeccCCC-Ce---ee--------EEEEECCCCHHHHHHHHHhCCCCC--CcccccCCCCCeEEEec
Confidence 999999999887666543322 22 11 145677767888999999999953 221 21 1467899998
Q ss_pred cC--ChhHHHHHHHHHHhhh
Q 012785 438 LD--RDENYNLFVQRLSKIL 455 (456)
Q Consensus 438 ~~--~~e~i~~~l~~L~~~l 455 (456)
+- ++++++.+++.|++++
T Consensus 418 TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 418 TELHEEEDLLALREALKEVL 437 (437)
T ss_dssp CTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 63 8999999999999875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.60 E-value=0.0017 Score=63.05 Aligned_cols=280 Identities=12% Similarity=0.034 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHhcCccCCCceEEEccCHHHHHHHHHHHhc---CCCCCCCcEEEEeCCCCCCh-hhhhhhcCCeEeeec
Q 012785 144 EFAKEVVRLHKVVGNAITENHHIVVGTGSTQLFQAALYALS---SQDASEPISVVSAAPYYSSY-PSITDCVKSRLYKWA 219 (456)
Q Consensus 144 ~lr~aia~~~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~---~~gd~~~~~Vlv~~P~y~~~-~~~~~~~g~~~~~~~ 219 (456)
|+...|+++.+. ++ -+.-.-.|++.+-+.++.+.. +.+......+.+..+.+... .......+..++.++
T Consensus 110 EfQtmi~eLTGM---dv---aNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (471)
T d1wyub1 110 ELGEYLKALTGM---DA---ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIP 183 (471)
T ss_dssp HHHHHHHHHHTC---SE---EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCC---Cc---cccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeeccc
Confidence 455555665543 21 122234566655454444331 22221111455555555544 444555566666655
Q ss_pred cCccc------cc---cCCCeEEEEcCCCCCCcccch-----HHhhhcCcEEEeeecCCCCCCCCCCC--CCCCcEEEec
Q 012785 220 GDAKR------FN---KDGPYIELVTSPNNPDGSVRQ-----SVVNRSGGILVHDLAYYWPQYTSITY--PADHDLMLFT 283 (456)
Q Consensus 220 ~d~~~------l~---~~~~~~i~v~~P~NPtG~~~~-----~l~~~~~~~iI~De~y~~~~~~~~~~--~~~~~i~i~S 283 (456)
.+..+ ++ ..++.++++.+|++.-+..-. +++++.+..++.|-+-.- ....+.. ....++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~-~~~~l~~p~~~g~div~vg 262 (471)
T d1wyub1 184 SGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLN-AIMGWARPGDMGFDVVHLN 262 (471)
T ss_dssp BCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGG-GTTTTCCHHHHTCSEEECC
T ss_pred ccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhccccccccccchh-hhhhccccCcccccccccc
Confidence 43221 11 135578888899876544321 256677877776643221 0111111 1234566666
Q ss_pred CccccCCC----CceEEEEEEeCHHHHHHHHH-------------------HHhhccCcCC-hHHHHHHHHHHHhhhCCC
Q 012785 284 VSKSTGHA----GTRIGWALVKDMEVAKKMTK-------------------YIELNTIGVS-KDSQLRAAKVLKVVSDSC 339 (456)
Q Consensus 284 ~SK~~g~~----G~RiG~l~~~~~~~~~~l~~-------------------~~~~~~~~~s-~~~q~~a~~~L~~~~~~~ 339 (456)
..+.||.| |--+|++.+. +++..++-- +++ ...+.+ .+...++...+.. -|
T Consensus 263 ~~q~~G~P~~~GGP~~G~~a~~-~~~~R~~PGRiV~~~~~~~~~~~~REqhIrR-e~actnqaL~al~A~vYlsl--lG- 337 (471)
T d1wyub1 263 LHKTFTVPHGGGGPGSGPVGVK-AHLAPYLPVPLVERGEEGFYLDFDRPKSIGR-VRSFYGNFLALVRAWAYIRT--LG- 337 (471)
T ss_dssp TTTTTCCCCTTSCCCCCCEEEC-GGGGGGCCSCEEEECSSCEEEECCCTTCCCC-SSSTTSCHHHHHHHHHHHHH--HH-
T ss_pred cccccccccccccccccceeeh-hhhhccCCCceecCCCccccccCCCcccccc-hhhhhhhHHHHHHHHHHHHH--hC-
Confidence 66666543 3347888886 666544320 000 011223 3333334333432 12
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccccccccCCCCCceEEeecCc--cHHHHHHHHHhCC
Q 012785 340 KPSGSEDECFFEFTNHQMSTRWKQLRMAVQKSGLFSVPELPSQFCTFLGRAFEPQPAFAWLKCEQ--EIEDCESFLKGNK 417 (456)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~~~g 417 (456)
.+-++++.+...++..++.+.|+. .++++. ..+.+.+ -..++++. +..++.+.|.++|
T Consensus 338 -------~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~-~~~~ff~-----------EFvv~~~~~~~~~~i~k~L~~~G 397 (471)
T d1wyub1 338 -------LEGLKKAAALAVLNARYLKELLKE-KGYRVP-YDGPSMH-----------EFVAQPPEGFRALDLAKGLLELG 397 (471)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHH-TTCBCS-SCSSCCS-----------CEEEBCSTTCCHHHHHHHHHHTT
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHhh-cCceec-cCcceee-----------EEeecCCCCCCHHHHHHHHHHcC
Confidence 677888999999999999999976 445543 2232211 13456654 4667888888899
Q ss_pred EEeecCCCCCC-CCCeEEEEecC--ChhHHHHHHHHHHhhhC
Q 012785 418 ILTRSGKHFGF-SPKYVRISMLD--RDENYNLFVQRLSKILS 456 (456)
Q Consensus 418 I~v~pg~~fg~-~~~~iRis~~~--~~e~i~~~l~~L~~~l~ 456 (456)
+.- +...|.. .++.+-++++- ++++|+.+++.|+++++
T Consensus 398 ~~~-~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~ 438 (471)
T d1wyub1 398 FHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK 438 (471)
T ss_dssp CCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCC-CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 853 3334432 46788888863 89999999999999864
|